Query 031386
Match_columns 160
No_of_seqs 109 out of 184
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 21:30:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_E Cytochrome B559 subunit 76.0 2.6 8.8E-05 29.7 3.5 35 82-117 17-54 (83)
2 3kp9_A Vkorc1/thioredoxin doma 18.4 2.8E+02 0.0094 22.8 6.4 27 41-67 64-90 (291)
3 2zxe_A Na, K-ATPase alpha subu 12.8 2.6E+02 0.009 26.7 5.4 33 57-91 967-1000(1028)
4 3ixz_A Potassium-transporting 11.4 2.4E+02 0.0081 27.0 4.6 9 79-87 960-968 (1034)
5 1hll_A Alpha-2A adrenergic rec 11.1 52 0.0018 17.2 -0.0 10 81-90 13-22 (32)
6 3vmt_A Monofunctional glycosyl 10.9 3.5E+02 0.012 22.3 5.0 37 108-158 58-94 (263)
7 4ev6_A Magnesium transport pro 10.0 6.3E+02 0.021 20.4 6.3 39 65-103 289-330 (339)
8 3ar4_A Sarcoplasmic/endoplasmi 9.6 4.7E+02 0.016 24.7 5.9 37 53-91 938-975 (995)
9 1fs1_A SKP2 F-BOX, cyclin A/CD 8.2 1.2E+02 0.004 17.7 0.8 20 62-82 8-27 (53)
10 3iyz_A Aquaporin-4; water tran 7.8 5.6E+02 0.019 21.7 5.2 48 45-94 135-185 (340)
No 1
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=76.01 E-value=2.6 Score=29.65 Aligned_cols=35 Identities=26% Similarity=0.626 Sum_probs=26.7
Q ss_pred cchh---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 031386 82 RYWA---LAVPAYAMVTLVLALVFYIGLNFMSTPSPTSL 117 (160)
Q Consensus 82 kyWA---laiP~~ll~~~~~~~~~Y~~~n~~~T~plds~ 117 (160)
|||. |.||++++.+.+|.-.+ ++|+..-||..+..
T Consensus 17 RYWvIHsITIPslFiaGwLFVstG-LaYdvFGtPrpneY 54 (83)
T 3arc_E 17 RYWVIHSITIPALFIAGWLFVSTG-LAYDVFGTPRPDSY 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHTCCCTTSS
T ss_pred eeEEEEeeccchHHHhhhhhhccC-cceeccCCCCcccc
Confidence 7885 68999999998776655 46777888886643
No 2
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=18.44 E-value=2.8e+02 Score=22.75 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=14.9
Q ss_pred cceeehhHHHHHHHHHHHHHHHhhccC
Q 031386 41 TSEVYGFVGSITTVVATGIFLVWAYVP 67 (160)
Q Consensus 41 ~~e~YGFv~~i~s~~~~~lyl~Wa~lP 67 (160)
..+.+||=.-++-.++|.+-++.+++|
T Consensus 64 ~a~~fGiP~~~~G~~~y~~v~~l~~~~ 90 (291)
T 3kp9_A 64 WAEFLGIPTAAVGLLGFLGVLALAVLP 90 (291)
T ss_dssp SSEETTEEHHHHHHHHHHHHHHHHHCC
T ss_pred cHhhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 344566655555555555555555555
No 3
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=12.81 E-value=2.6e+02 Score=26.70 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=15.0
Q ss_pred HHHHHHhhccChHHHH-HcCcccccCcchhHHHHHH
Q 031386 57 TGIFLVWAYVPERCLN-AIGIYYYPSRYWALAVPAY 91 (160)
Q Consensus 57 ~~lyl~Wa~lP~~~L~-~lGity~P~kyWAlaiP~~ 91 (160)
+++-++-.|+| .++ .+|.+-+|-.+|.++++.-
T Consensus 967 ~~l~~~~~~~p--~~~~~f~~~~l~~~~w~~~~~~~ 1000 (1028)
T 2zxe_A 967 TALAAFLSYCP--GTDVALRMYPLKPSWWFCAFPYS 1000 (1028)
T ss_dssp HHHHHHHHHST--THHHHTCCCCCCGGGGGTTHHHH
T ss_pred HHHHHHHHHhh--hHHhhhcCCCCCHHHHHHHHHHH
Confidence 33334444455 222 2444555556665544433
No 4
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=11.40 E-value=2.4e+02 Score=26.97 Aligned_cols=9 Identities=22% Similarity=0.508 Sum_probs=3.7
Q ss_pred ccCcchhHH
Q 031386 79 YPSRYWALA 87 (160)
Q Consensus 79 ~P~kyWAla 87 (160)
+.+|++-++
T Consensus 960 ~~N~~l~~~ 968 (1034)
T 3ixz_A 960 FRNRILVIA 968 (1034)
T ss_pred cccHHHHHH
Confidence 344444333
No 5
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Probab=11.12 E-value=52 Score=17.19 Aligned_cols=10 Identities=30% Similarity=0.989 Sum_probs=6.6
Q ss_pred CcchhHHHHH
Q 031386 81 SRYWALAVPA 90 (160)
Q Consensus 81 ~kyWAlaiP~ 90 (160)
|||+||.-|.
T Consensus 13 dRy~aI~~Pl 22 (32)
T 1hll_A 13 DRYWSITQAI 22 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhhhh
Confidence 5777776663
No 6
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=10.93 E-value=3.5e+02 Score=22.27 Aligned_cols=37 Identities=8% Similarity=0.094 Sum_probs=22.0
Q ss_pred HhcCCCCCCccccccccccccCCCCCCCCCCCCCCCCcCCHHHHHHhhcCC
Q 031386 108 FMSTPSPTSLNKMFDEFTREASSYSPEGDDRPIEPISDISIDKINALMFND 158 (160)
Q Consensus 108 ~~~T~plds~~tI~D~~a~~~~~~~~~~~~~~ip~i~DLPI~~Vn~~LY~~ 158 (160)
+..++..+++..+... +..-++.|||-..++.++--+
T Consensus 58 ~~~~~~~~~l~~~~~~--------------r~~v~l~~Ip~~l~~AvIA~E 94 (263)
T 3vmt_A 58 LSTRDNVDELRKIENK--------------SSFVSADNMPEYVKGAFISME 94 (263)
T ss_dssp HHSCSCGGGGGGGGGS--------------TTCCCGGGSCHHHHHHHHHHH
T ss_pred hhccCchhhhhhhhcc--------------CCCCCHHHcCHHHHHHHHHHH
Confidence 4677777665544211 223467788888877766543
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=9.97 E-value=6.3e+02 Score=20.39 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=23.8
Q ss_pred ccChHHHHH-cCc--ccccCcchhHHHHHHHHHHHHHHHHHH
Q 031386 65 YVPERCLNA-IGI--YYYPSRYWALAVPAYAMVTLVLALVFY 103 (160)
Q Consensus 65 ~lP~~~L~~-lGi--ty~P~kyWAlaiP~~ll~~~~~~~~~Y 103 (160)
|+|-.++-. .|. .+.|--.|.-+.|..+.+.++.+.+.|
T Consensus 289 flP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~~~ 330 (339)
T 4ev6_A 289 FAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMIFV 330 (339)
T ss_dssp SSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHHHH
Confidence 455555443 554 578988888888776655444444443
No 8
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=9.57 E-value=4.7e+02 Score=24.73 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhccChHHHHH-cCcccccCcchhHHHHHH
Q 031386 53 TVVATGIFLVWAYVPERCLNA-IGIYYYPSRYWALAVPAY 91 (160)
Q Consensus 53 s~~~~~lyl~Wa~lP~~~L~~-lGity~P~kyWAlaiP~~ 91 (160)
..+.+++.++-.|+| +++. +|.+-+|-.+|.+.+.+-
T Consensus 938 ~~~~~~l~~~~~~~p--~~~~~f~~~~l~~~~w~~~~~~~ 975 (995)
T 3ar4_A 938 ICLSMSLHFLILYVD--PLPMIFKLKALDLTQWLMVLKIS 975 (995)
T ss_dssp HHHHHHHHHHHHHST--HHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHhhccCCCCHHHHHHHHHHH
Confidence 333344444555666 4443 666677777887766543
No 9
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=8.16 E-value=1.2e+02 Score=17.70 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=13.7
Q ss_pred HhhccChHHHHHcCcccccCc
Q 031386 62 VWAYVPERCLNAIGIYYYPSR 82 (160)
Q Consensus 62 ~Wa~lP~~~L~~lGity~P~k 82 (160)
.|.-+|++.|..+ +.|+|-+
T Consensus 8 ~~~~LP~eil~~I-~~~L~~~ 27 (53)
T 1fs1_A 8 SWDSLPDELLLGI-FSCLCLP 27 (53)
T ss_dssp -CCSSCHHHHHHH-HTTSCGG
T ss_pred CHHHCCHHHHHHH-HHcCCHH
Confidence 3677999988775 3577754
No 10
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=7.80 E-value=5.6e+02 Score=21.70 Aligned_cols=48 Identities=10% Similarity=0.183 Sum_probs=25.5
Q ss_pred ehhHHHHHHHHHHHHHHHhhccChHHHHHcCcccccCc---chhHHHHHHHHH
Q 031386 45 YGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSR---YWALAVPAYAMV 94 (160)
Q Consensus 45 YGFv~~i~s~~~~~lyl~Wa~lP~~~L~~lGity~P~k---yWAlaiP~~ll~ 94 (160)
|--++.+...++- .++|...|+.....+|+++.+.. .+++...+...+
T Consensus 135 YiiAQ~lGA~~GA--~lv~~~~~~~~~~~lg~~~~~~~~s~~~~f~~E~i~Tf 185 (340)
T 3iyz_A 135 YITAQCLGAIIGA--GILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITF 185 (340)
T ss_pred HHHHHHHHHHHHH--HHHHHhcchhhcCceeeccCCCccCHHHHHHHHHHHHH
Confidence 3333444444433 35677778776666777765432 345555544443
Done!