Query 031386
Match_columns 160
No_of_seqs 109 out of 184
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 21:30:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031386.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031386hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axte1 f.23.38.1 (E:3-84) Cyt 79.2 0.92 6.7E-05 30.2 3.6 35 82-117 16-53 (82)
2 d1fs1a1 a.158.1.1 (A:109-149) 16.5 21 0.0015 19.3 0.8 20 63-83 1-20 (41)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 13.8 38 0.0028 21.7 1.7 65 24-96 12-86 (100)
4 d2i5nh2 f.23.10.1 (H:1-36) Pho 12.3 70 0.0051 17.2 2.2 19 43-61 14-32 (36)
5 d2a65a1 f.54.1.1 (A:5-513) Na( 10.2 2.9E+02 0.021 21.6 6.6 54 51-104 409-468 (509)
6 d2gxba1 a.4.5.19 (A:140-198) Z 10.2 49 0.0036 20.2 1.2 12 146-157 28-39 (59)
7 d3b45a1 f.51.1.1 (A:91-270) Gl 9.8 1.5E+02 0.011 19.8 4.1 45 46-90 4-52 (180)
8 d1rzhh2 f.23.10.1 (H:11-35) Ph 9.5 74 0.0054 16.2 1.6 6 59-64 7-12 (26)
9 d1v54d_ f.23.1.1 (D:) Mitochon 9.3 1.9E+02 0.014 20.1 4.4 44 79-125 70-113 (144)
10 d2h8pc1 f.14.1.1 (C:22-78) Pot 8.5 2E+02 0.015 16.7 4.4 8 115-122 36-43 (57)
No 1
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=79.18 E-value=0.92 Score=30.20 Aligned_cols=35 Identities=26% Similarity=0.626 Sum_probs=26.7
Q ss_pred cchh---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 031386 82 RYWA---LAVPAYAMVTLVLALVFYIGLNFMSTPSPTSL 117 (160)
Q Consensus 82 kyWA---laiP~~ll~~~~~~~~~Y~~~n~~~T~plds~ 117 (160)
|||. |.||++++.+.+|...+ ++|+..-||..|..
T Consensus 16 RYWvIHsiTIPslFiaGwlFVstG-LAYdvFGtPrPneY 53 (82)
T d2axte1 16 RYWVIHSITIPALFIAGWLFVSTG-LAYDVFGTPRPDSY 53 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-HHHHHTTCCCTTCS
T ss_pred eEEEEEeecccHHHHhhhhheecc-cchhhcCCCCcccc
Confidence 7884 68999999998766554 46777888887654
No 2
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.46 E-value=21 Score=19.31 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=13.5
Q ss_pred hhccChHHHHHcCcccccCcc
Q 031386 63 WAYVPERCLNAIGIYYYPSRY 83 (160)
Q Consensus 63 Wa~lP~~~L~~lGity~P~ky 83 (160)
|.-+|++.+..+ +.|+|-|-
T Consensus 1 f~~LP~eil~~I-f~~L~~~d 20 (41)
T d1fs1a1 1 WDSLPDELLLGI-FSCLCLPE 20 (41)
T ss_dssp CCSSCHHHHHHH-HTTSCGGG
T ss_pred CCcCCHHHHHHH-HHcCCHHH
Confidence 556888887765 35777653
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.78 E-value=38 Score=21.68 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=32.2
Q ss_pred CCcCCCcccccCCCCCccceeehhHHHHHHHHHHHHHHHhhccChHHHHHc-CcccccCcc---------hhHHHHHHHH
Q 031386 24 VSFLDQDDRTYSGFGPKTSEVYGFVGSITTVVATGIFLVWAYVPERCLNAI-GIYYYPSRY---------WALAVPAYAM 93 (160)
Q Consensus 24 ~~~~d~~~~~~s~~g~~~~e~YGFv~~i~s~~~~~lyl~Wa~lP~~~L~~l-Gity~P~ky---------WAlaiP~~ll 93 (160)
..||||... ...|+++|-.++...+.+++.+++..+=--..+.- .=.-.|+|+ |. ++|+.++
T Consensus 12 l~fqd~as~-------~a~~i~~l~~~v~~i~~~I~~~V~~~l~~~~~~~r~~~~~~~~~~~~n~~LEiiWT-viP~lIL 83 (100)
T d3dtub2 12 TGFQPSASP-------VATQIHWLDGFILVIIAAITIFVTLLILYAVWRFHEKRNKVPARFTHNSPLEIAWT-IVPIVIL 83 (100)
T ss_dssp CSCCCCCSH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTTCCSCCCCCCCHHHHHHHH-HHHHHHH
T ss_pred cCCCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCccccCcchHHHHHH-HHHHHHH
Confidence 456776433 35667666666555555544444333322111110 001244444 54 5788888
Q ss_pred HHH
Q 031386 94 VTL 96 (160)
Q Consensus 94 ~~~ 96 (160)
+++
T Consensus 84 i~l 86 (100)
T d3dtub2 84 VAI 86 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 4
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=12.30 E-value=70 Score=17.23 Aligned_cols=19 Identities=5% Similarity=0.116 Sum_probs=13.7
Q ss_pred eeehhHHHHHHHHHHHHHH
Q 031386 43 EVYGFVGSITTVVATGIFL 61 (160)
Q Consensus 43 e~YGFv~~i~s~~~~~lyl 61 (160)
..-+++.|+..+....+|+
T Consensus 14 qlvwyaqwlviwtvvllyl 32 (36)
T d2i5nh2 14 QLVWYAQWLVIWTVVLLYL 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3457888888877777765
No 5
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=10.25 E-value=2.9e+02 Score=21.57 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhccChHHHHHc--CcccccCcchh----HHHHHHHHHHHHHHHHHHH
Q 031386 51 ITTVVATGIFLVWAYVPERCLNAI--GIYYYPSRYWA----LAVPAYAMVTLVLALVFYI 104 (160)
Q Consensus 51 i~s~~~~~lyl~Wa~lP~~~L~~l--Gity~P~kyWA----laiP~~ll~~~~~~~~~Y~ 104 (160)
+...+.-++.+.|.|=.+++.+.+ +..+.+.|+|. ...|+.+++.+++..+-|.
T Consensus 409 ~~~~l~e~i~v~w~yg~~r~~~di~~~~~~~~~~~~~~~~~~i~Pi~l~~ili~~~~~~~ 468 (509)
T d2a65a1 409 VFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYI 468 (509)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHheeeeEecHHHHHHHHHhCCCCCHHHHHHHheeeeeHhhhhheeehhHhhcc
Confidence 334455667788999999887763 23466677666 4557777766555544443
No 6
>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.16 E-value=49 Score=20.17 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=10.1
Q ss_pred CCHHHHHHhhcC
Q 031386 146 ISIDKINALMFN 157 (160)
Q Consensus 146 LPI~~Vn~~LY~ 157 (160)
+|=.+||++||.
T Consensus 28 vpKk~iNr~LYs 39 (59)
T d2gxba1 28 TPKKEINRVLYS 39 (59)
T ss_dssp CCHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 677899999995
No 7
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=9.81 E-value=1.5e+02 Score=19.76 Aligned_cols=45 Identities=11% Similarity=0.248 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHhhccChHHHHH-cCccc---ccCcchhHHHHH
Q 031386 46 GFVGSITTVVATGIFLVWAYVPERCLNA-IGIYY---YPSRYWALAVPA 90 (160)
Q Consensus 46 GFv~~i~s~~~~~lyl~Wa~lP~~~L~~-lGity---~P~kyWAlaiP~ 90 (160)
|-+.+.+..+..++|+++.+.+++-... ++..+ .+-++|.+.-..
T Consensus 4 ~pvT~~li~i~~~vf~~~~~~~~~~~~~~~~~~~~~~~~g~~wrl~T~~ 52 (180)
T d3b45a1 4 GPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHA 52 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCGGGGTGGG
T ss_pred CcHHHHHHHHHHHHHHHHHHhCcHHHHHHHcCCCcccccCchHHHHHHH
Confidence 5577888888889999999998654443 44443 344689887653
No 8
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.47 E-value=74 Score=16.19 Aligned_cols=6 Identities=33% Similarity=1.138 Sum_probs=2.4
Q ss_pred HHHHhh
Q 031386 59 IFLVWA 64 (160)
Q Consensus 59 lyl~Wa 64 (160)
+|+.|.
T Consensus 7 iw~fw~ 12 (26)
T d1rzhh2 7 IYSFWI 12 (26)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
No 9
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.28 E-value=1.9e+02 Score=20.07 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=29.5
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccc
Q 031386 79 YPSRYWALAVPAYAMVTLVLALVFYIGLNFMSTPSPTSLNKMFDEFT 125 (160)
Q Consensus 79 ~P~kyWAlaiP~~ll~~~~~~~~~Y~~~n~~~T~plds~~tI~D~~a 125 (160)
-|.-.|..++=. .++++.++.+++...+...-+| -.+|+++|.-
T Consensus 70 ~p~gewK~v~g~-~~~~i~~s~~i~~~~r~~v~p~--~P~T~~~Ewq 113 (144)
T d1v54d_ 70 RSTNEWKTVVGA-AMFFIGFTALLLIWEKHYVYGP--IPHTFEEEWV 113 (144)
T ss_dssp CCCSHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCC--CCGGGSHHHH
T ss_pred CCCCchhHHHHH-HHHHHHHHHHHHHHHHHHcCCC--CCCCCCHHHH
Confidence 578889888744 4455566777777777765555 2457777764
No 10
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.46 E-value=2e+02 Score=16.66 Aligned_cols=8 Identities=13% Similarity=-0.089 Sum_probs=3.9
Q ss_pred CCcccccc
Q 031386 115 TSLNKMFD 122 (160)
Q Consensus 115 ds~~tI~D 122 (160)
+.+.+|.|
T Consensus 36 ~~f~sip~ 43 (57)
T d2h8pc1 36 AQLITYPR 43 (57)
T ss_dssp CCCCSHHH
T ss_pred ccccccch
Confidence 44555544
Done!