Query 031387
Match_columns 160
No_of_seqs 158 out of 1046
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 21:32:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hks_A EIF-5A-2, eukaryotic tr 100.0 8.4E-57 2.9E-61 351.0 18.0 157 1-158 9-165 (167)
2 3er0_A Eukaryotic translation 100.0 2.4E-56 8.1E-61 348.6 15.2 153 1-159 11-166 (167)
3 1x6o_A Eukaryotic initiation f 100.0 4.6E-55 1.6E-59 343.3 18.6 155 1-159 9-174 (174)
4 3cpf_A Eukaryotic translation 100.0 4.4E-52 1.5E-56 315.9 16.6 135 16-155 1-138 (138)
5 1iz6_A Initiation factor 5A; S 100.0 8.3E-49 2.8E-53 297.9 15.8 134 17-157 2-137 (138)
6 1bkb_A Translation initiation 100.0 3.5E-47 1.2E-51 288.2 17.9 129 19-154 6-135 (136)
7 2eif_A IF-5A, protein (eukaryo 100.0 2.1E-45 7.3E-50 278.5 16.0 131 16-156 5-135 (136)
8 3a5z_B EF-P, elongation factor 100.0 4.5E-43 1.5E-47 278.9 14.3 128 17-154 2-129 (191)
9 1ueb_A EF-P, TT0860, elongatio 100.0 1.2E-41 4.1E-46 269.4 16.2 122 22-154 2-123 (184)
10 3tre_A EF-P, elongation factor 100.0 6.5E-41 2.2E-45 266.5 17.5 124 21-154 6-129 (191)
11 1yby_A Translation elongation 100.0 6.7E-41 2.3E-45 270.5 15.6 124 21-154 31-154 (215)
12 3oyy_A EF-P, elongation factor 100.0 5.2E-40 1.8E-44 261.3 16.4 123 21-154 4-128 (191)
13 1khi_A HEX1; membrane sealing, 100.0 1.5E-37 5.2E-42 242.9 15.2 140 11-158 24-173 (176)
14 3qx1_A FAS-associated factor 1 58.0 13 0.00044 24.3 4.0 30 53-83 3-32 (84)
15 3r8s_P 50S ribosomal protein L 49.5 37 0.0013 24.2 5.4 63 23-87 15-86 (114)
16 1ed7_A Chitinase A1, (CHBD-CHI 49.5 5.5 0.00019 23.5 0.9 25 26-50 7-31 (45)
17 2ftc_K 39S ribosomal protein L 49.4 56 0.0019 22.6 6.2 51 26-78 3-60 (98)
18 2ciu_A TIM21P, import inner me 47.4 77 0.0026 22.8 7.2 51 36-107 67-120 (127)
19 3v2d_T 50S ribosomal protein L 45.1 46 0.0016 24.8 5.5 63 23-87 18-89 (146)
20 1k0h_A Gpfii; twisted beta-san 44.9 4.9 0.00017 28.7 0.2 33 23-58 71-103 (117)
21 3o27_A Putative uncharacterize 42.8 27 0.00091 22.7 3.4 41 107-155 22-62 (68)
22 1at0_A 17-hedgehog; developmen 42.6 30 0.001 24.9 4.2 30 19-48 84-119 (145)
23 2fhd_A RAD9 homolog, DNA repai 41.8 33 0.0011 25.7 4.3 41 22-62 59-110 (153)
24 2f9h_A PTS system, IIA compone 40.8 26 0.00088 25.4 3.5 21 25-45 53-73 (129)
25 2z14_A EF-hand domain-containi 37.1 30 0.001 25.0 3.4 25 22-46 84-108 (133)
26 2ftc_B Mitochondrial ribosomal 32.0 1.5E+02 0.005 21.5 6.7 54 26-82 50-110 (136)
27 2zjr_M 50S ribosomal protein L 30.2 63 0.0022 24.5 4.3 54 23-78 23-84 (166)
28 1p6p_A Fatty acid-binding prot 30.0 1.3E+02 0.0046 20.9 5.9 47 59-105 46-92 (125)
29 1mvg_A Liver basic fatty acid 29.1 94 0.0032 21.8 4.9 47 59-105 46-92 (125)
30 3gs9_A Protein GP18; NP_465809 28.7 96 0.0033 25.4 5.6 40 26-67 55-94 (342)
31 2exd_A NFED short homolog; mem 28.5 69 0.0024 20.9 3.8 35 25-63 25-59 (80)
32 1p9k_A ORF, hypothetical prote 26.9 57 0.002 20.7 3.2 19 25-43 60-78 (79)
33 2kca_A Bacteriophage SPP1 comp 26.8 1.4E+02 0.0047 19.6 8.3 49 13-64 51-103 (109)
34 2eqm_A PHD finger protein 20-l 26.4 61 0.0021 21.6 3.3 35 11-45 3-43 (88)
35 1ifc_A Intestinal fatty acid b 26.1 1E+02 0.0034 21.8 4.7 46 59-104 47-92 (132)
36 1o8v_A Fatty acid binding prot 25.3 1.1E+02 0.0038 21.6 4.8 46 59-104 50-95 (134)
37 1ggl_A Protein (cellular retin 25.3 1.3E+02 0.0044 21.3 5.1 46 59-104 48-95 (134)
38 3nol_A Glutamine cyclotransfer 24.2 2E+02 0.0067 22.9 6.5 90 18-119 35-127 (262)
39 1b56_A Fatty acid binding prot 23.9 1.2E+02 0.004 21.6 4.7 46 59-104 51-96 (135)
40 3ppt_A Sodium-calcium exchange 23.2 1.3E+02 0.0044 21.3 4.8 47 59-105 48-94 (133)
41 2qo4_A Liver-basic fatty acid 23.0 94 0.0032 21.8 4.0 47 59-105 47-93 (126)
42 1ftp_A Muscle fatty acid bindi 22.8 1.5E+02 0.0051 20.9 5.0 46 59-104 50-96 (133)
43 2lcj_A PAB POLC intein; hydrol 22.7 1.2E+02 0.004 22.4 4.7 16 21-36 105-120 (185)
44 1mdc_A Insect fatty acid bindi 22.6 1.2E+02 0.0042 21.4 4.5 46 59-104 48-93 (132)
45 2rcq_A CRBP-II, retinol-bindin 22.4 1.4E+02 0.0047 21.4 4.8 46 59-104 52-99 (141)
46 1y43_B Aspergillopepsin II hea 22.0 1.9E+02 0.0064 21.7 5.7 43 22-77 52-94 (173)
47 2a2p_A Selenoprotein M, SELM p 21.9 67 0.0023 23.3 3.0 41 89-132 47-87 (129)
48 2crq_A Mitochondrial translati 21.7 54 0.0018 23.1 2.4 24 124-149 33-56 (112)
49 1rl2_A Protein (ribosomal prot 21.5 95 0.0033 22.6 3.8 31 49-82 87-123 (137)
50 1o6a_A Putative flagellar moto 21.4 1E+02 0.0034 20.6 3.7 19 24-42 37-58 (96)
51 2f73_A L-FABP, fatty acid-bind 21.0 1.2E+02 0.0042 22.0 4.4 47 59-105 69-116 (149)
52 2k50_A Replication factor A re 20.5 2E+02 0.0067 19.1 6.1 52 22-77 8-63 (115)
53 1crb_A Cellular retinol bindin 20.3 1.4E+02 0.0047 21.2 4.4 46 59-104 48-95 (134)
54 4a60_A Fatty acid-binding prot 20.3 2E+02 0.0068 21.1 5.4 47 59-105 71-117 (154)
55 4a1y_A Myelin P2 protein; tran 20.2 1.4E+02 0.0049 21.1 4.5 47 59-105 50-96 (133)
No 1
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=100.00 E-value=8.4e-57 Score=351.05 Aligned_cols=157 Identities=78% Similarity=1.246 Sum_probs=130.1
Q ss_pred CCccccccccccCCCceeeEEEeccccCCceEEEEcCeeEEEEEeeeecCCCCcccEEEEEEEEccCCcEEEEeecCCCc
Q 031387 1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN 80 (160)
Q Consensus 1 ~~~~~~~f~~~~~~~~s~t~~i~~~~lkkG~~i~i~g~p~~Vve~~~~kpGKhG~A~v~~k~knl~TG~~~e~tf~s~~~ 80 (160)
|||.||+|+ +++||||.||||+|++||+|++|+++|+||+|++++|+||||||+||||+++|||+||+++|++|||+++
T Consensus 9 ~~~~~~~~~-~~~~gas~t~pi~~~dlrkG~~I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~k 87 (167)
T 3hks_A 9 MSDDEHHFE-ASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHN 87 (167)
T ss_dssp ----------------CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSE
T ss_pred cCccccccc-ccCCCCCccEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCE
Confidence 899999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecceEEEeeeEEEEecCCCcEEEecCCCCceecccCCcchhhHHHHHhhccCCCeEEEEEEccCCcEEEEEEeccCC
Q 031387 81 CDAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGP 158 (160)
Q Consensus 81 ve~~~ve~~~~qyly~d~d~~~~fMd~ety~~Eqi~l~~~~~llg~~~~~l~eg~~v~v~~~~~mg~e~v~~~k~~~~ 158 (160)
|++|+|++++|||||+|++++|+|||++||++.+++||++.+|..++..||++|++|.|++|++||+|+|+++|++.+
T Consensus 88 ve~~~ver~~~QyLY~d~d~~~~fMD~etyeQ~~l~lp~~~~lg~~i~~~l~eG~~v~V~v~~~mg~e~i~~~k~~~~ 165 (167)
T 3hks_A 88 CDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVGG 165 (167)
T ss_dssp EEEECCEEEEEEEEEECTTSBEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEeeeEEEEEEEEEEECCCCEEEEEcCCCceEEEEecCchHHHHHHHHHHhhCCCEEEEEEEeeCCeEEEEEEEecCC
Confidence 999999999999999976669999999999333367888722344466999999999999999999999999998653
No 2
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-56 Score=348.59 Aligned_cols=153 Identities=56% Similarity=0.961 Sum_probs=135.2
Q ss_pred CCccccccccccCCCceeeEEEeccccCCceEEEEcCeeEEEEEeeeecCCCCcccEEEEEEEEccCCcEEEEeecCCCc
Q 031387 1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN 80 (160)
Q Consensus 1 ~~~~~~~f~~~~~~~~s~t~~i~~~~lkkG~~i~i~g~p~~Vve~~~~kpGKhG~A~v~~k~knl~TG~~~e~tf~s~~~ 80 (160)
|||+||+|+ +++|+||.||||+|++||+|++|+++|+||+|++++|+||||||+||||+++|||+||+++|++|||+++
T Consensus 11 ~~~~~~~~~-~~~~~as~t~pi~a~dlrkG~~I~idG~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~k 89 (167)
T 3er0_A 11 MSDEEHTFE-TADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHN 89 (167)
T ss_dssp ------------CCCCCCCEEEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSE
T ss_pred ccccccccc-ccCCCCcceEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCcCceEEEEEEEEcCCCCEEEEEEcCCCc
Confidence 899999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecceEEEeeeEEEEecCCCcEEEec--CCCCceecccCCcchhhHHHH-HhhccCCCeEEEEEEccCCcEEEEEEeccC
Q 031387 81 CDAPHVTRTDYQLIDISEDGFVSLLT--ETGNTKDDLRLPTDENLLSQI-KDGFAEGKDLVVTVMSSMGEEQICALKDIG 157 (160)
Q Consensus 81 ve~~~ve~~~~qyly~d~d~~~~fMd--~ety~~Eqi~l~~~~~llg~~-~~~l~eg~~v~v~~~~~mg~e~v~~~k~~~ 157 (160)
|++|+|++++|||||+|++ .|+||| .++| ||+.||++. +++. ..||++|++|.|++|++||+|+|+++|++.
T Consensus 90 ve~~~ver~~~QyLY~dg~-~~~FMD~~~ety--eqi~l~~~~--lgd~i~~~l~eg~~v~V~~~~~mg~e~i~~~k~~~ 164 (167)
T 3er0_A 90 MEVPVVKRNEYQLLDIDDG-FLSLMNMDGDTK--DDVKAPEGE--LGDSLQTAFDEGKDLMVTIISAMGEEAAISFKEAA 164 (167)
T ss_dssp EEECCCCEEEEECCCCTTT-TCCCCCSSSCCC--SCCCCCCSS--HHHHHHHTTSSCCCCEEEEEEETTEEEEEEECCCC
T ss_pred cccceEEEeeEEEEEEcCC-EEEEEeCCCCee--EEEEcCHHH--HHHHHHHHhhCCCEEEEEEEhhCCcEEEEEEEecC
Confidence 9999999999999999866 899999 7788 999999985 6664 488999999999999999999999999976
Q ss_pred CC
Q 031387 158 PK 159 (160)
Q Consensus 158 ~~ 159 (160)
..
T Consensus 165 ~~ 166 (167)
T 3er0_A 165 RT 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 3
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=100.00 E-value=4.6e-55 Score=343.27 Aligned_cols=155 Identities=45% Similarity=0.794 Sum_probs=127.5
Q ss_pred CCcccc--ccccccCCCceeeEEEeccccCCceEEEEcCeeEEEEEeeeecCCCCcccEEEEEEEEccCCcEEEEeecCC
Q 031387 1 MSDEEH--HFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78 (160)
Q Consensus 1 ~~~~~~--~f~~~~~~~~s~t~~i~~~~lkkG~~i~i~g~p~~Vve~~~~kpGKhG~A~v~~k~knl~TG~~~e~tf~s~ 78 (160)
|||+.+ +|+ +++|++|.|||+++++||+|++|+|+|+||+|++++|+||||||+||||+++|||+||+++|++|||+
T Consensus 9 ~~~~~~~~~~~-~~~~~as~t~~i~a~dlrkG~~I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~ 87 (174)
T 1x6o_A 9 MSDEDHDFSHQ-GGGDNASKTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPST 87 (174)
T ss_dssp -------------------CEEEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETT
T ss_pred cccccccccee-cCCCCCceeEEEEHHHccCCCEEEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCC
Confidence 666544 699 99999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred CceecceEEEeeeEEEEecCC------CcEEEecCCCCceecccC--CcchhhHHHH-HhhccCCCeEEEEEEccCCcEE
Q 031387 79 HNCDAPHVTRTDYQLIDISED------GFVSLLTETGNTKDDLRL--PTDENLLSQI-KDGFAEGKDLVVTVMSSMGEEQ 149 (160)
Q Consensus 79 ~~ve~~~ve~~~~qyly~d~d------~~~~fMd~ety~~Eqi~l--~~~~~llg~~-~~~l~eg~~v~v~~~~~mg~e~ 149 (160)
++|++|+|++++|||||+|++ ++|+|||++|| ||+.| |++. .+++. ..||++|++|.|++|++||+|+
T Consensus 88 ~kve~~~Ver~~~QyLY~dgd~~~~~~g~~~fMD~ety--eq~~l~~p~~~-~lgd~i~~~l~eg~~v~V~~~~~mG~e~ 164 (174)
T 1x6o_A 88 HNVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMDDEGE--SREDLDMPPDP-ALATQIKEQFDSGKDVLVVVVSAMGTEQ 164 (174)
T ss_dssp SEEEEECCEEEEEEEEEEECCSSTTSCCEEEEECTTSC--EECCCBCCSCH-HHHHHHHHHHHTTCCEEEEEEEETTEEE
T ss_pred CEEEeeEEEEEEEEEEEecCCcccccccEEEEEcCCCc--eEEEeeCCchh-hHHHHHHHHhhCCCEEEEEEEeeCCeEE
Confidence 999999999999999999987 69999999999 88888 6761 27777 8999999999999999999999
Q ss_pred EEEEeccCCC
Q 031387 150 ICALKDIGPK 159 (160)
Q Consensus 150 v~~~k~~~~~ 159 (160)
|+++|++.+|
T Consensus 165 i~~~k~~~~~ 174 (174)
T 1x6o_A 165 VLQTKNAAEK 174 (174)
T ss_dssp EEEEEECCC-
T ss_pred EEEEEeccCC
Confidence 9999998765
No 4
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=100.00 E-value=4.4e-52 Score=315.88 Aligned_cols=135 Identities=52% Similarity=0.907 Sum_probs=124.2
Q ss_pred ceeeEEEeccccCCceEEEEcCeeEEEEEeeeecCCCCcccEEEEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEE
Q 031387 16 ASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLID 95 (160)
Q Consensus 16 ~s~t~~i~~~~lkkG~~i~i~g~p~~Vve~~~~kpGKhG~A~v~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly 95 (160)
||.|||+++++||+|++|+++|+||+|++++|+||||||+||||+++|||+||+++|+||||++++++|+|++++|||||
T Consensus 1 ~~~t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~kve~~~v~~~~~qyly 80 (138)
T 3cpf_A 1 GSATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIG 80 (138)
T ss_dssp -CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEE
T ss_pred CCccEEEEHHHCcCCCEEEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEE
Confidence 58899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred ecCCCcEEEecCCCCceeccc--CCcchhhHHHHH-hhccCCCeEEEEEEccCCcEEEEEEec
Q 031387 96 ISEDGFVSLLTETGNTKDDLR--LPTDENLLSQIK-DGFAEGKDLVVTVMSSMGEEQICALKD 155 (160)
Q Consensus 96 ~d~d~~~~fMd~ety~~Eqi~--l~~~~~llg~~~-~~l~eg~~v~v~~~~~mg~e~v~~~k~ 155 (160)
.||+ +|+|||++|| ||+. ||++. +|+.. +||+||++|.|++|++||+|+|+++|.
T Consensus 81 ~dg~-~~~fMD~ety--eq~~l~l~~~~--lgd~~~~~l~eg~~v~V~~~~~~g~e~~~~~k~ 138 (138)
T 3cpf_A 81 IQDG-YLSLLQDSGE--VREDLRLPEGD--LGKEIEQKYDCGEEILITVLSAMTEEAAVAIKA 138 (138)
T ss_dssp EETT-EEEEECTTSC--EECCSBCCSHH--HHHHHHHHHHHTCCCEEEEEEETTEEEEEEEC-
T ss_pred ecCC-EEEEEcCCCC--eEeeecCCHHH--HHHHHHHHhhCCCEEEEEEEhhCCcEEEEEEeC
Confidence 9866 8999999999 8888 68774 88877 999999999999999999999999983
No 5
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=8.3e-49 Score=297.86 Aligned_cols=134 Identities=27% Similarity=0.517 Sum_probs=126.4
Q ss_pred eeeEEEeccccCCceEEEEcCeeEEEEEeeeecCCCCcccEEEEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEe
Q 031387 17 SKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDI 96 (160)
Q Consensus 17 s~t~~i~~~~lkkG~~i~i~g~p~~Vve~~~~kpGKhG~A~v~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~ 96 (160)
|.|||+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|++|||+++++.|+|++++|||||.
T Consensus 2 ~~t~~i~a~~lkkG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY~ 81 (138)
T 1iz6_A 2 GDKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAI 81 (138)
T ss_dssp CCEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEE
T ss_pred CceEEEEHHHccCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeeceEEEEEEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEecCCCCceecccC--CcchhhHHHHHhhccCCCeEEEEEEccCCcEEEEEEeccC
Q 031387 97 SEDGFVSLLTETGNTKDDLRL--PTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIG 157 (160)
Q Consensus 97 d~d~~~~fMd~ety~~Eqi~l--~~~~~llg~~~~~l~eg~~v~v~~~~~mg~e~v~~~k~~~ 157 (160)
|++ .|+|||++|| ||+.| |++. +|++..||++|+.|.| +.+||+++|+++|+.+
T Consensus 82 dg~-~~~fMD~ety--eq~~l~~~~~~--lgd~~~~l~e~~~V~v--~~~~G~~~i~~~k~~~ 137 (138)
T 1iz6_A 82 TPD-TVQIMDMETY--ETFEVPIDTGV--ADEIRDQLKEGINVEY--WETLGRIKIMRIKGEG 137 (138)
T ss_dssp CSS-EEEEECTTTC--CEEEEEHHHHB--CGGGTTTCCTTCEEEE--EEETTEEEEEEETTCC
T ss_pred CCC-EEEEEeCCCC--ceEEeeCCHHH--HHHHHHhCCCCCEEEE--EEECCcEEEEEEeecc
Confidence 876 8999999999 99988 7664 8999999999997655 7799999999999854
No 6
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=3.5e-47 Score=288.17 Aligned_cols=129 Identities=29% Similarity=0.525 Sum_probs=123.0
Q ss_pred eEEEeccccCCceEEEEcCeeEEEEEeeeecCCCCcccEEEEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEecC
Q 031387 19 TFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISE 98 (160)
Q Consensus 19 t~~i~~~~lkkG~~i~i~g~p~~Vve~~~~kpGKhG~A~v~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~d~ 98 (160)
|||+++++||+|++|+++|+||+|++++|+||||||+||||+++|||+||+++|++|||++++++|+|++++|||||.|+
T Consensus 6 t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY~dg 85 (136)
T 1bkb_A 6 TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSVSG 85 (136)
T ss_dssp CEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEECS
T ss_pred EEEEEHHHccCCCEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEEEEEEEecC
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999986
Q ss_pred CCcEEEecCCCCceecccCCcchhh-HHHHHhhccCCCeEEEEEEccCCcEEEEEEe
Q 031387 99 DGFVSLLTETGNTKDDLRLPTDENL-LSQIKDGFAEGKDLVVTVMSSMGEEQICALK 154 (160)
Q Consensus 99 d~~~~fMd~ety~~Eqi~l~~~~~l-lg~~~~~l~eg~~v~v~~~~~mg~e~v~~~k 154 (160)
+ .|+|||++|| ||+.||.+ . ++++.+||+||++|.|+ ..+|+++|+++|
T Consensus 86 ~-~~~fMD~ety--eq~~l~~~--~~~gd~~~~l~e~~~v~v~--~~~g~~~~~~~k 135 (136)
T 1bkb_A 86 D-VIQLMDMRDY--KTIEVPMK--YVEEEAKGRLAPGAEVEVW--QILDRYKIIRVK 135 (136)
T ss_dssp S-EEEEEETTTC--CEEEEEGG--GBCHHHHTTCCTTCEEEEE--EETTEEEEEEEC
T ss_pred C-EEEEEeCCCC--eEEEeccc--cchhHHHhhCCCCCEEEEE--EECCEEEEEEec
Confidence 6 8999999999 99999987 4 78999999999987665 458999999998
No 7
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=100.00 E-value=2.1e-45 Score=278.47 Aligned_cols=131 Identities=29% Similarity=0.516 Sum_probs=121.5
Q ss_pred ceeeEEEeccccCCceEEEEcCeeEEEEEeeeecCCCCcccEEEEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEE
Q 031387 16 ASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLID 95 (160)
Q Consensus 16 ~s~t~~i~~~~lkkG~~i~i~g~p~~Vve~~~~kpGKhG~A~v~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly 95 (160)
+|.|||+++++||+|++|+++|+||+|++++|+||||||+||+|+++|||+||+++|++|+++++++.|+|+++++||||
T Consensus 5 m~~t~~i~~~~lr~G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly 84 (136)
T 2eif_A 5 MPGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLA 84 (136)
T ss_dssp CSSEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEE
T ss_pred EEeeEEEEHHHCcCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccccEeeeEEEEEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcEEEecCCCCceecccCCcchhhHHHHHhhccCCCeEEEEEEccCCcEEEEEEecc
Q 031387 96 ISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDI 156 (160)
Q Consensus 96 ~d~d~~~~fMd~ety~~Eqi~l~~~~~llg~~~~~l~eg~~v~v~~~~~mg~e~v~~~k~~ 156 (160)
.|++ .|+|||++|| ||+.||.+ +++.+ |+||+.|.| +..||+++|+++|+.
T Consensus 85 ~dg~-~~~fMD~ety--eq~~l~~~----gd~~~-l~e~~~v~v--~~~~G~~~i~~~k~~ 135 (136)
T 2eif_A 85 IMGD-MVQIMDLQTY--ETLELPIP----EGIEG-LEPGGEVEY--IEAVGQYKITRVIGG 135 (136)
T ss_dssp EETT-EEEEEETTTC--CEEEEECC----SCCTT-CSTTCEEEE--EEETTEEEEEEEC--
T ss_pred ecCC-EEEEEeCCCc--eEEEecCC----Cchhh-CCCCCEEEE--EEECCEEEEEEEEec
Confidence 9876 8999999999 99999887 36777 999997655 667899999999974
No 8
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=100.00 E-value=4.5e-43 Score=278.93 Aligned_cols=128 Identities=15% Similarity=0.219 Sum_probs=118.3
Q ss_pred eeeEEEeccccCCceEEEEcCeeEEEEEeeeecCCCCcccEEEEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEe
Q 031387 17 SKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDI 96 (160)
Q Consensus 17 s~t~~i~~~~lkkG~~i~i~g~p~~Vve~~~~kpGKhG~A~v~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~ 96 (160)
|+-+|+++++||+|++|+++|+||+|++++|+|||| |+||+|+++|||+||+++|++|+|+++++.|+|++++|||||.
T Consensus 2 ~~m~~~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~ 80 (191)
T 3a5z_B 2 SHMATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGK-GQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYN 80 (191)
T ss_dssp ----CEESTTCCTTCEEEETTEEEEEEEEEEECCTT-CCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEE
T ss_pred CccceeeHHHCCCCCEEEECCEEEEEEEEEEEcCCC-CcEEEEEEEEECCCCCEEEEEECCCCEEEeeEEEEEEEEEEEe
Confidence 556899999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEecCCCCceecccCCcchhhHHHHHhhccCCCeEEEEEEccCCcEEEEEEe
Q 031387 97 SEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 154 (160)
Q Consensus 97 d~d~~~~fMd~ety~~Eqi~l~~~~~llg~~~~~l~eg~~v~v~~~~~mg~e~v~~~k 154 (160)
||+ .|+|||+||| ||+.||++. ++++.+||+||++|.|++|+. .++++.
T Consensus 81 dgd-~~~FMD~ety--eQ~~l~~~~--lgd~~~~l~e~~~v~v~~~~g----~~i~v~ 129 (191)
T 3a5z_B 81 DGE-FWHFMNNETF--EQLSADAKA--IGDNAKWLLDQAECIVTLWNG----QPISVT 129 (191)
T ss_dssp CSS-CEEEECTTTC--CEEEECHHH--HCTTTTTCCSSEECEEEEETT----EEEEEE
T ss_pred CCC-EEEEeeCCCC--eEEEccHHH--hhhHHhhcCCCCEEEEEEECC----EEEEEE
Confidence 977 7999999999 999999985 999999999999999999974 566654
No 9
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=100.00 E-value=1.2e-41 Score=269.37 Aligned_cols=122 Identities=15% Similarity=0.166 Sum_probs=114.4
Q ss_pred EeccccCCceEEEEcCeeEEEEEeeeecCCCCcccEEEEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEecCCCc
Q 031387 22 QQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGF 101 (160)
Q Consensus 22 i~~~~lkkG~~i~i~g~p~~Vve~~~~kpGKhG~A~v~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~d~d~~ 101 (160)
+++++||+|++|+++|+||+|++++|+|||| |+||+|+++|||+||+++|++|||+++++.|+|++++|||||.||+ .
T Consensus 2 i~a~dlkkG~~i~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd-~ 79 (184)
T 1ueb_A 2 ISVTDLRPGTKVKMDGGLWECVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGE-E 79 (184)
T ss_dssp EEGGGCCTTCEEEETTEEEEEEEEEEEEETT-SCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEETT-E
T ss_pred cchhhcCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEECCCCEEEeeeEEEEEEEEEEeCCC-E
Confidence 6899999999999999999999999999999 9999999999999999999999999999999999999999999977 7
Q ss_pred EEEecCCCCceecccCCcchhhHHHHHhhccCCCeEEEEEEccCCcEEEEEEe
Q 031387 102 VSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 154 (160)
Q Consensus 102 ~~fMd~ety~~Eqi~l~~~~~llg~~~~~l~eg~~v~v~~~~~mg~e~v~~~k 154 (160)
|+|||+||| ||+.||++. +++. +||+||++|.|++|+. .++++.
T Consensus 80 ~~FMD~ety--eq~~l~~~~--lgd~-~~L~eg~~v~v~~~~g----~~i~v~ 123 (184)
T 1ueb_A 80 MVFMDLETY--EQFAVPRSR--VVGA-EFFKEGMTALGDMYEG----QPIKVT 123 (184)
T ss_dssp EEEEETTTC--CEEEEEGGG--BTTG-GGCCTTCEEEEEEETT----EEEEEE
T ss_pred EEEeeCCCc--eeEEcCHHH--cChh-hhcCCCCEEEEEEECC----EEEEEE
Confidence 999999999 999999985 8888 9999999999988853 455543
No 10
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=100.00 E-value=6.5e-41 Score=266.50 Aligned_cols=124 Identities=17% Similarity=0.257 Sum_probs=117.5
Q ss_pred EEeccccCCceEEEEcCeeEEEEEeeeecCCCCcccEEEEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEecCCC
Q 031387 21 PQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDG 100 (160)
Q Consensus 21 ~i~~~~lkkG~~i~i~g~p~~Vve~~~~kpGKhG~A~v~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~d~d~ 100 (160)
.+++++||+|++|+++|+||+|++++|+|||| |+||+|+++|||+||+++|++|+|+++++.|+|+++++||||.|++
T Consensus 6 m~~a~dlkkG~~I~~dG~p~~Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd- 83 (191)
T 3tre_A 6 THSTNEFRGGLKVMVDGDPCSIIDNEFVKPGK-GQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYNDGE- 83 (191)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEECCSS-SCCEEEEEEEETTTCCEEEEEEETTCEECBCCEEEEEEEEEEECSS-
T ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEeCCCCEEEeceEEEEEEEEEEEcCC-
Confidence 48999999999999999999999999999999 9999999999999999999999999999999999999999999977
Q ss_pred cEEEecCCCCceecccCCcchhhHHHHHhhccCCCeEEEEEEccCCcEEEEEEe
Q 031387 101 FVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 154 (160)
Q Consensus 101 ~~~fMd~ety~~Eqi~l~~~~~llg~~~~~l~eg~~v~v~~~~~mg~e~v~~~k 154 (160)
.|+|||++|| ||+.||++. +|++.+||+||++|.|++|+. .++++.
T Consensus 84 ~~~FMD~ety--Eq~~l~~~~--lgd~~~~L~eg~~v~v~~~~~----~~i~v~ 129 (191)
T 3tre_A 84 FWHFMTSENY--EQHAASKEA--VAEAKQWLKEEALCMVTMWNG----VPLSVE 129 (191)
T ss_dssp CEEEEESSSC--CEEEECHHH--HGGGGGGCCTTCEEEEEEETT----EEEEEE
T ss_pred cEEEccCCch--HheecchhH--hhhHHhhCCCCCEEEEEEECC----EEEEEE
Confidence 8999999999 999999985 999999999999999999973 566654
No 11
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=100.00 E-value=6.7e-41 Score=270.48 Aligned_cols=124 Identities=18% Similarity=0.235 Sum_probs=114.8
Q ss_pred EEeccccCCceEEEEcCeeEEEEEeeeecCCCCcccEEEEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEecCCC
Q 031387 21 PQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDG 100 (160)
Q Consensus 21 ~i~~~~lkkG~~i~i~g~p~~Vve~~~~kpGKhG~A~v~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~d~d~ 100 (160)
.+++++||+|++|+++|+||+|++++|+|||| |+||+|+|+|||+||+++|++|+++++++.|+|++++|||||.|++
T Consensus 31 Mi~a~dlKkG~~I~idG~p~~Vve~~hvKPGK-G~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~QylY~Dgd- 108 (215)
T 1yby_A 31 MISAGDFKNGVTFELDGQIFQVIEFQHVKPGK-GAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLYNDGD- 108 (215)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEECCC---CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEEEEEEETT-
T ss_pred EEEhhhccCCCEEEECCEEEEEEEEEEEcCCC-CceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEEEEEEEeCCC-
Confidence 37999999999999999999999999999999 9999999999999999999999999999999999999999999977
Q ss_pred cEEEecCCCCceecccCCcchhhHHHHHhhccCCCeEEEEEEccCCcEEEEEEe
Q 031387 101 FVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALK 154 (160)
Q Consensus 101 ~~~fMd~ety~~Eqi~l~~~~~llg~~~~~l~eg~~v~v~~~~~mg~e~v~~~k 154 (160)
.|+|||+||| ||+.||++. ++++.+||+||++|.|++|+. .++++.
T Consensus 109 ~y~FMD~ETy--EQi~l~~~~--lgd~~~fLkEg~~v~v~~~~g----~~i~ve 154 (215)
T 1yby_A 109 LYYFMDTETF--EQLPLGKDK--IGDALKFVKENEIVKVLSHKG----NVFGIE 154 (215)
T ss_dssp EEEEECTTTC--CEEEEEHHH--HTTTTTTCCTTCEEEEEEETT----EEEEEE
T ss_pred EEEEccCCCC--eeEEecHHH--hhhHHhhCCCCCEEEEEEECC----EEEEEE
Confidence 8999999999 999999985 999999999999999999964 455543
No 12
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=100.00 E-value=5.2e-40 Score=261.30 Aligned_cols=123 Identities=11% Similarity=0.203 Sum_probs=115.4
Q ss_pred EEeccccCCceEEEEcCeeEEEEEeeeecCCCCcccEEEEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEecCCC
Q 031387 21 PQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDG 100 (160)
Q Consensus 21 ~i~~~~lkkG~~i~i~g~p~~Vve~~~~kpGKhG~A~v~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~d~d~ 100 (160)
.+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|++|+|+++++.|+|+++++||||.|++
T Consensus 4 m~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd- 81 (191)
T 3oyy_A 4 MKTAQEFRAGQVANINGAPWVIQKAEFNKSGR-NAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADP- 81 (191)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEECCTT-SCCEEEEEEEETTTCCEEEEEEETTCEEEECCCEEEEEEEEEECSS-
T ss_pred cccHHhCCCCCEEEECCEEEEEEEEEeeeCCC-CcEEEEEEEEECCCCCEEEEEeCCCCEEEeeeEEEEEEEEEEecCC-
Confidence 47899999999999999999999999999999 6799999999999999999999999999999999999999999977
Q ss_pred cEEEecCCCCceecccCCcchhhHHHHHhhccCCCe--EEEEEEccCCcEEEEEEe
Q 031387 101 FVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKD--LVVTVMSSMGEEQICALK 154 (160)
Q Consensus 101 ~~~fMd~ety~~Eqi~l~~~~~llg~~~~~l~eg~~--v~v~~~~~mg~e~v~~~k 154 (160)
.|+||| +|| ||+.||++. +|++.+||+||++ |.|++|+. .++++.
T Consensus 82 ~~~FMD-ety--Eq~~l~~~~--lgd~~~~L~eg~~~~v~v~~~~~----~~i~v~ 128 (191)
T 3oyy_A 82 LYVFMD-SEF--NQYEIEKDD--LEGVLTFIEDGMTDICEAVFYND----KVISVE 128 (191)
T ss_dssp SEEEEE-TTC--CEEEECGGG--CTTTGGGCCTTCCCCEEEEEETT----EEEEEE
T ss_pred EEEEEe-cCh--hheeCChHH--hhhHHhhCcCCCEeEEEEEEECC----EEEEEE
Confidence 899999 999 999999985 8999999999999 99999973 455544
No 13
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=1.5e-37 Score=242.90 Aligned_cols=140 Identities=29% Similarity=0.536 Sum_probs=128.2
Q ss_pred ccCCCceeeEEEeccccCCceEEEEcCeeEEEEEeeee-cCCCCcccEEEEEEEEccCCcEEEEeecCC--------Cce
Q 031387 11 KADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTS-KTGKHGHAKCHFVGIDIFNGKKLEDIVPSS--------HNC 81 (160)
Q Consensus 11 ~~~~~~s~t~~i~~~~lkkG~~i~i~g~p~~Vve~~~~-kpGKhG~A~v~~k~knl~TG~~~e~tf~s~--------~~v 81 (160)
+++|++|.|||++|+.||+|.||+|+|+||+|++++++ ||||| |+.+.|||||+++|..+|++ +++
T Consensus 24 ~~~~gas~T~p~q~~~LrkG~yv~IkGrPCKIveiStS~KtGKH-----~ivaiDIFTgkK~edi~Pss~p~p~~~~hnm 98 (176)
T 1khi_A 24 TGTGSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH-----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTM 98 (176)
T ss_dssp ---CCSCCEEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE-----EEEEEETTTCCEEEEECCEECSSTTCCEEEE
T ss_pred CCCCCCCccEEEEhhheeeCCEEEECCeeeEEEEEEccCCCCce-----EEEEEEccCCcEeEEeccccCCCccccccee
Confidence 68999999999999999999999999999999999999 89998 89999999999999999999 899
Q ss_pred ecceEEEeeeEEEEecCCCcEEEecCCCCceecccCCcchhhHHHHHhhccCCCe-EEEEEEccCCcEEEEEEeccCC
Q 031387 82 DAPHVTRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKD-LVVTVMSSMGEEQICALKDIGP 158 (160)
Q Consensus 82 e~~~ve~~~~qyly~d~d~~~~fMd~ety~~Eqi~l~~~~~llg~~~~~l~eg~~-v~v~~~~~mg~e~v~~~k~~~~ 158 (160)
++|+|+ +||+|.++ |+++++||++++++++++||...+|..++...|.+|.+ +.|++|++||+|+|+++|++.+
T Consensus 99 ~VPvVk--~yQlldI~-dg~lsLMd~~G~~k~dl~lp~~~~l~~~i~~~f~~G~~~~~V~v~~amG~e~iv~~K~~~~ 173 (176)
T 1khi_A 99 LGPVFK--QYRVLDMQ-DGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGREMAVDMKVVHG 173 (176)
T ss_dssp EEECCE--EEEEEEEE-TTEEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTEEEEEEEEECCC
T ss_pred ccceeE--EEEEEEEc-CCeEEEEeCCCCEEeeeEccchHHHHHHHHHHhhCCCceEEEEEEeECCcEEEEEEEeccc
Confidence 999996 99999997 55999999999999999999833477778888999988 5599999999999999999765
No 14
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=58.02 E-value=13 Score=24.28 Aligned_cols=30 Identities=17% Similarity=0.035 Sum_probs=22.8
Q ss_pred CcccEEEEEEEEccCCcEEEEeecCCCceec
Q 031387 53 HGHAKCHFVGIDIFNGKKLEDIVPSSHNCDA 83 (160)
Q Consensus 53 hG~A~v~~k~knl~TG~~~e~tf~s~~~ve~ 83 (160)
|+...+++.+| +-+|+.+.++|++++++..
T Consensus 3 ~~~~~~~i~iR-lpdG~r~~~~F~~~~tl~~ 32 (84)
T 3qx1_A 3 HMEPVSKLRIR-TPSGEFLERRFLASNKLQI 32 (84)
T ss_dssp -CCCEEEEEEE-CTTSCEEEEEEETTSBHHH
T ss_pred CCCCeEEEEEE-CCCCCEEEEEeCCCCCHHH
Confidence 44456666666 6789999999999999863
No 15
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=49.49 E-value=37 Score=24.18 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=39.6
Q ss_pred eccccCCceEEEEc-----CeeEEEEEeeee---cCCCCcccEEEEEEEEccCCcEEEEeecCCC-ceecceEE
Q 031387 23 QAGTIRKNGYIVIK-----NRPCKVVEVSTS---KTGKHGHAKCHFVGIDIFNGKKLEDIVPSSH-NCDAPHVT 87 (160)
Q Consensus 23 ~~~~lkkG~~i~i~-----g~p~~Vve~~~~---kpGKhG~A~v~~k~knl~TG~~~e~tf~s~~-~ve~~~ve 87 (160)
...++++|++|.+. |...++--++-+ +-|+ | .--.+.++++..|-=+|.+||-.. .++...|.
T Consensus 15 ~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~-G-~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~ 86 (114)
T 3r8s_P 15 DVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNR-G-LHSAFTVRKISNGEGVERVFQTHSPVVDSISVK 86 (114)
T ss_dssp CCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECC-G-GGCEEEEEEEETTEEEEEEEETTCTTEEEEEEE
T ss_pred CCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECC-C-CCeEEEEEEecCCccEEEEEecCCCccceEEEE
Confidence 45589999988763 665555444322 2233 2 223578999999999999998643 24433333
No 16
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=49.46 E-value=5.5 Score=23.51 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=20.6
Q ss_pred ccCCceEEEEcCeeEEEEEeeeecC
Q 031387 26 TIRKNGYIVIKNRPCKVVEVSTSKT 50 (160)
Q Consensus 26 ~lkkG~~i~i~g~p~~Vve~~~~kp 50 (160)
.-+.|+.|.++|..|+++.-.++.|
T Consensus 7 ~Y~~Gd~Vty~G~~Y~c~q~hts~~ 31 (45)
T 1ed7_A 7 AYTAGQLVTYNGKTYKCLQPHTSLA 31 (45)
T ss_dssp EECTTCCEEETTEEECBCSCEEECT
T ss_pred eEcCCCEEEECCeEEEEEecCcCcC
Confidence 3478999999999999998777644
No 17
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=49.44 E-value=56 Score=22.59 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=30.9
Q ss_pred ccCCceEEEEc----CeeEEEEEeeee---cCCCCcccEEEEEEEEccCCcEEEEeecCC
Q 031387 26 TIRKNGYIVIK----NRPCKVVEVSTS---KTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78 (160)
Q Consensus 26 ~lkkG~~i~i~----g~p~~Vve~~~~---kpGKhG~A~v~~k~knl~TG~~~e~tf~s~ 78 (160)
++++|+.|.+. |...++--++-+ +-|+ | .--.+.+|++..|-=+|.+||-.
T Consensus 3 ~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~-G-~~~tftvRki~~gvGVEr~fpl~ 60 (98)
T 2ftc_K 3 EFYVGSILRVTTADPYASGKISQFLGICIQRSGR-G-LGATFILRNVIEGQGVEICFELY 60 (98)
T ss_pred ccCCCCEEEEEEEECCCceEeeeEEEEEEEEECC-C-CCcEEEEEEeccCceEEEEEecC
Confidence 56777765443 333333323221 2233 2 23468899999999999999863
No 18
>2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae}
Probab=47.38 E-value=77 Score=22.83 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=32.8
Q ss_pred cCeeEEEEEeeeecCCCCcccEEEEEEEEc-cCCcEEEEeecCCCceecceEEEeeeEEEEecCC--CcEEEecC
Q 031387 36 KNRPCKVVEVSTSKTGKHGHAKCHFVGIDI-FNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISED--GFVSLLTE 107 (160)
Q Consensus 36 ~g~p~~Vve~~~~kpGKhG~A~v~~k~knl-~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~d~d--~~~~fMd~ 107 (160)
+|..+..+.|.-.-| ++.+.|++.++.- .++ .-+|.|||.|=. .-+++.|+
T Consensus 67 dG~eH~rm~F~VeG~--~~~G~V~le~~k~~~~~-------------------~~ef~Yl~vDV~g~~Ri~Le~p 120 (127)
T 2ciu_A 67 EGRTHHYMRFHVESK--KKIALVHLEAKESKQNY-------------------QPDFINMYVDVPGEKRYYLIKP 120 (127)
T ss_dssp TSCEEEEEEEEEECS--SCEEEEEEEEECCSSCS-------------------SCEEEEEEEECTTSCCEEEECC
T ss_pred CCCEEEEEEEEEEcC--CCcEEEEEEEEecCCCC-------------------ceEEEEEEEEeCCCceEEEECC
Confidence 688998888866544 3678888888652 233 236777777632 34566664
No 19
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=45.08 E-value=46 Score=24.75 Aligned_cols=63 Identities=11% Similarity=0.154 Sum_probs=38.6
Q ss_pred eccccCCceEEEE-----cCeeEEEEEeeee---cCCCCcccEEEEEEEEccCCcEEEEeecCCC-ceecceEE
Q 031387 23 QAGTIRKNGYIVI-----KNRPCKVVEVSTS---KTGKHGHAKCHFVGIDIFNGKKLEDIVPSSH-NCDAPHVT 87 (160)
Q Consensus 23 ~~~~lkkG~~i~i-----~g~p~~Vve~~~~---kpGKhG~A~v~~k~knl~TG~~~e~tf~s~~-~ve~~~ve 87 (160)
..-+|++|++|.+ +|...+|--|+-+ .-|+ | .--.+.++++..|-=+|.+||-.. .++...|.
T Consensus 18 diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~-G-l~~tFtVRkis~gvGVEr~Fpl~SP~I~~IeVv 89 (146)
T 3v2d_T 18 DLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRN-G-FNTTFTVRKVSYGVGVERIFPLHSPLIQKIDIV 89 (146)
T ss_dssp CCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECC-G-GGCEEEEEEEETTEEEEEEEETTCTTEEEEEEE
T ss_pred cCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECC-C-CCeEEEEEEecCCccEEEEEecCCCccceEEEE
Confidence 4458999998765 4554444333222 2233 2 223578999999999999998643 24433333
No 20
>1k0h_A Gpfii; twisted beta-sandwich, viral protein; NMR {Enterobacteria phage lambda} SCOP: b.106.1.2 PDB: 2kx4_A
Probab=44.93 E-value=4.9 Score=28.67 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=25.8
Q ss_pred eccccCCceEEEEcCeeEEEEEeeeecCCCCcccEE
Q 031387 23 QAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKC 58 (160)
Q Consensus 23 ~~~~lkkG~~i~i~g~p~~Vve~~~~kpGKhG~A~v 58 (160)
.+..+++|+.|.+.|+.|.|.+ +.|.-+|.+.+
T Consensus 71 D~~~~~~gD~v~i~g~~y~V~~---v~PDg~G~~~L 103 (117)
T 1k0h_A 71 EVRQLRRGDTLTIGEENFWVDR---VSPDDGGSCHL 103 (117)
T ss_dssp STTTCCSSCEEEETTTCEEBCC---CCSSSCCCTTC
T ss_pred ccCCCCCCCEEEECCeEEEEee---eccCCCCeEEE
Confidence 4556789999999999999987 47765576643
No 21
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=42.83 E-value=27 Score=22.73 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=28.7
Q ss_pred CCCCceecccCCcchhhHHHHHhhccCCCeEEEEEEccCCcEEEEEEec
Q 031387 107 ETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKD 155 (160)
Q Consensus 107 ~ety~~Eqi~l~~~~~llg~~~~~l~eg~~v~v~~~~~mg~e~v~~~k~ 155 (160)
.++| |+.+|.+ +-++. -+++|+++.+.+- .=+.+.++-+|-
T Consensus 22 ~ety---YInIPae---I~kaL-gIk~gD~fel~ve-~kdgeIvLcykR 62 (68)
T 3o27_A 22 HTTF---YLLIPKD---IAEAL-DIKPDDTFILNME-QKDGDIVLSYKR 62 (68)
T ss_dssp CCCE---EEEECHH---HHHHT-TCCTTCCEEEEEE-EETTEEEEEEEE
T ss_pred ceEE---EEeCcHH---HHHHh-CCCCCCEEEEEEe-cCCCeEEEEehh
Confidence 6778 8999998 44544 5789999888754 445566666553
No 22
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=42.55 E-value=30 Score=24.92 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=23.0
Q ss_pred eEEEeccccCCceEEEEc-C-----eeEEEEEeeee
Q 031387 19 TFPQQAGTIRKNGYIVIK-N-----RPCKVVEVSTS 48 (160)
Q Consensus 19 t~~i~~~~lkkG~~i~i~-g-----~p~~Vve~~~~ 48 (160)
.-.+.|++|++|+.|.+. | +|.+|++++.+
T Consensus 84 ~~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~ 119 (145)
T 1at0_A 84 LTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSV 119 (145)
T ss_dssp EEEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEE
T ss_pred EEEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEE
Confidence 456899999999988654 4 57888887665
No 23
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=41.80 E-value=33 Score=25.68 Aligned_cols=41 Identities=10% Similarity=0.002 Sum_probs=30.6
Q ss_pred EeccccCCceEEEEcCe---eEEEEEeeeecC--------CCCcccEEEEEE
Q 031387 22 QQAGTIRKNGYIVIKNR---PCKVVEVSTSKT--------GKHGHAKCHFVG 62 (160)
Q Consensus 22 i~~~~lkkG~~i~i~g~---p~~Vve~~~~kp--------GKhG~A~v~~k~ 62 (160)
+..=+||+|+.|.+++- ||.|+.+.+.-+ --+|++.|.++-
T Consensus 59 vk~LeLRiGD~VKVd~vpK~~hiVvGf~~~l~~~~~~~~TDi~Gh~tViL~~ 110 (153)
T 2fhd_A 59 IKRFFLKKGDVVQSTRLGKIKHTVVKTFRSTNEQLSLIAVDALNNDMVILAH 110 (153)
T ss_dssp EEESCCCTTCEEEETTSTTCCEEEEEEECCCSSCCCGGGCCTTCCCEEEEEE
T ss_pred ceeeeeecCCEEEECCCCCccEEEEEecccccccccceeeeecCceEEEEcc
Confidence 45568999999999974 799999974322 345888877654
No 24
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=40.84 E-value=26 Score=25.42 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=19.6
Q ss_pred cccCCceEEEEcCeeEEEEEe
Q 031387 25 GTIRKNGYIVIKNRPCKVVEV 45 (160)
Q Consensus 25 ~~lkkG~~i~i~g~p~~Vve~ 45 (160)
.+|++|+.+.|+++-|+|..+
T Consensus 53 ~~i~~Gd~l~i~~~~Y~ItaV 73 (129)
T 2f9h_A 53 VTLAEGDHLKIGDTNYTITKV 73 (129)
T ss_dssp CCCCTTCEEEETTEEEEEEEE
T ss_pred CCcCCCCEEEECCEEEEEEEE
Confidence 589999999999999999877
No 25
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A
Probab=37.10 E-value=30 Score=25.04 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=23.1
Q ss_pred EeccccCCceEEEEcCeeEEEEEee
Q 031387 22 QQAGTIRKNGYIVIKNRPCKVVEVS 46 (160)
Q Consensus 22 i~~~~lkkG~~i~i~g~p~~Vve~~ 46 (160)
....||..|..|.|-|+.+.|+++.
T Consensus 84 ~~~~Dl~VG~~v~i~gR~f~I~dcD 108 (133)
T 2z14_A 84 YTVYHFNVGTEVVFYGRTFKIYDCD 108 (133)
T ss_dssp CCGGGCCTTCEEEETTEEEEEEEEC
T ss_pred cCHHHcccCCEEEEecEEEEEEeCC
Confidence 6788999999999999999999974
No 26
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=32.01 E-value=1.5e+02 Score=21.55 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=26.6
Q ss_pred ccCCceEEEEcCeeE-EEEEeeeecCCCCcc------cEEEEEEEEccCCcEEEEeecCCCcee
Q 031387 26 TIRKNGYIVIKNRPC-KVVEVSTSKTGKHGH------AKCHFVGIDIFNGKKLEDIVPSSHNCD 82 (160)
Q Consensus 26 ~lkkG~~i~i~g~p~-~Vve~~~~kpGKhG~------A~v~~k~knl~TG~~~e~tf~s~~~ve 82 (160)
+++.|+.+-+..-|- .++-.--.+||++|+ +++++..| .++..--++||++.-.
T Consensus 50 ~i~~GN~lpL~~iP~Gt~IhNIE~~pG~gg~laRsAGt~a~ii~k---e~~~~~vrLPSGe~r~ 110 (136)
T 2ftc_B 50 AAREGDAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRK---VNGTAIIQLPSKRQMQ 110 (136)
T ss_pred ccCcCcEEEecccCCCCEEEEEeccCCCCcEEEEeCCCeEEEEEe---cCCEEEEECCCCCeEE
Confidence 455555555554441 111112227888432 34455555 3556666667766543
No 27
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=30.25 E-value=63 Score=24.46 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=35.6
Q ss_pred eccccCCceEEEEc-----CeeEEEEEeeee---cCCCCcccEEEEEEEEccCCcEEEEeecCC
Q 031387 23 QAGTIRKNGYIVIK-----NRPCKVVEVSTS---KTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78 (160)
Q Consensus 23 ~~~~lkkG~~i~i~-----g~p~~Vve~~~~---kpGKhG~A~v~~k~knl~TG~~~e~tf~s~ 78 (160)
..-+|++|++|.+. |...++--|+-+ +-|+ | .--.+.+|++..|-=+|.+||-.
T Consensus 23 diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~-G-l~sTFTVRkis~GvGVER~Fplh 84 (166)
T 2zjr_M 23 QLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGS-G-SRKSFTVRKISFGEGVERVFPFA 84 (166)
T ss_dssp CCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCC-G-GGCEEEEEEEETTEEEEEEEETT
T ss_pred CCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCC-C-CCcEEEEEEecCCeeEEEEEecC
Confidence 44679999998764 443333333221 2344 3 22368899999999999999874
No 28
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=30.00 E-value=1.3e+02 Score=20.93 Aligned_cols=47 Identities=9% Similarity=0.032 Sum_probs=37.3
Q ss_pred EEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEecCCCcEEEe
Q 031387 59 HFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLL 105 (160)
Q Consensus 59 ~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~d~d~~~~fM 105 (160)
++.++..-+.+..+.+|+.++.++...++-+.++-++.-+++.++..
T Consensus 46 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 92 (125)
T 1p6p_A 46 EFVVTSKTPKQTHSNSFTVGKESEITSMDGKKIKVTVQLEGGKLICK 92 (125)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEECTTTSCCEEEEEEECSSEEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEEcCCCCEEEEEEEEECCEEEEE
Confidence 46777888889999999999999998888888877766444467664
No 29
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=29.08 E-value=94 Score=21.79 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=37.2
Q ss_pred EEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEecCCCcEEEe
Q 031387 59 HFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLL 105 (160)
Q Consensus 59 ~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~d~d~~~~fM 105 (160)
++.++..-+.+..+.+|+.++.++...++-+.++-++.-+++.++..
T Consensus 46 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 92 (125)
T 1mvg_A 46 DFVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKCTVHLANGKLVTK 92 (125)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEETTTEEEEEEEEECSSEEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEeeEEEEEECCEEEEe
Confidence 47777888889999999999999988888888877766444467664
No 30
>3gs9_A Protein GP18; NP_465809.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MLY MSE; 1.70A {Listeria monocytogenes egd-e}
Probab=28.68 E-value=96 Score=25.42 Aligned_cols=40 Identities=10% Similarity=0.136 Sum_probs=31.9
Q ss_pred ccCCceEEEEcCeeEEEEEeeeecCCCCcccEEEEEEEEccC
Q 031387 26 TIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFN 67 (160)
Q Consensus 26 ~lkkG~~i~i~g~p~~Vve~~~~kpGKhG~A~v~~k~knl~T 67 (160)
-|.++..|.++|+.|+|..++...-| |...+.+.+++++-
T Consensus 55 ~l~~e~~I~~~~q~YvI~~~~~~~~g--~~~~~~V~A~hi~~ 94 (342)
T 3gs9_A 55 FLDYESSVYFRGQEFVVKQLSHDAVG--KTLSKDIRAPHIYY 94 (342)
T ss_dssp CSSTTCEEEETTEEEECCEECCBC-----CEEEEEEEEBGGG
T ss_pred hhCcCCEEEECCcEEEEEEeEeecCC--CEEEEEEEEEEeee
Confidence 49999999999999999998777555 34778899998874
No 31
>2exd_A NFED short homolog; membrane protein; NMR {Pyrococcus horikoshii} SCOP: b.40.12.1
Probab=28.51 E-value=69 Score=20.87 Aligned_cols=35 Identities=6% Similarity=0.059 Sum_probs=24.4
Q ss_pred cccCCceEEEEcCeeEEEEEeeeecCCCCcccEEEEEEE
Q 031387 25 GTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGI 63 (160)
Q Consensus 25 ~~lkkG~~i~i~g~p~~Vve~~~~kpGKhG~A~v~~k~k 63 (160)
.+|.+...|.++|+.|.+..-+...+|. .|++..+
T Consensus 25 ~~i~~~G~V~i~Ge~W~A~s~~~i~~G~----~V~Vv~v 59 (80)
T 2exd_A 25 KIAEDHYLVEVEGDKWIAYSDEKLSLGD----RVMVVDV 59 (80)
T ss_dssp ECCTTCEEEEETTEEEEECCSSCCCTTC----EEEEEEE
T ss_pred EecCCCEEEEECCEEEEEEECCccCCCC----EEEEEEE
Confidence 3566678899999999997655555654 4555543
No 32
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=26.90 E-value=57 Score=20.72 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=16.0
Q ss_pred cccCCceEEEEcCeeEEEE
Q 031387 25 GTIRKNGYIVIKNRPCKVV 43 (160)
Q Consensus 25 ~~lkkG~~i~i~g~p~~Vv 43 (160)
..++.|+.|.++|+|+.|+
T Consensus 60 ~~v~~gd~I~v~~~~~~~~ 78 (79)
T 1p9k_A 60 CKIVAGQTVSFAGHSVQVV 78 (79)
T ss_dssp CCCCSSEEEEETTEEEEEE
T ss_pred CCCCCCCEEEECCEEEEEe
Confidence 3578899999999998775
No 33
>2kca_A Bacteriophage SPP1 complete nucleotide sequence; beta-barrel, virus; NMR {Bacillus phage SPP1}
Probab=26.78 E-value=1.4e+02 Score=19.58 Aligned_cols=49 Identities=8% Similarity=0.121 Sum_probs=31.9
Q ss_pred CCCceeeEEE--e-ccccCCceEEEEcCeeEEEEEe-eeecCCCCcccEEEEEEEE
Q 031387 13 DAGASKTFPQ--Q-AGTIRKNGYIVIKNRPCKVVEV-STSKTGKHGHAKCHFVGID 64 (160)
Q Consensus 13 ~~~~s~t~~i--~-~~~lkkG~~i~i~g~p~~Vve~-~~~kpGKhG~A~v~~k~kn 64 (160)
...+..|+.+ - ..+|.+++.|.++|+.|.|..+ ... .++ +-++.+.++.
T Consensus 51 ~~~~~~t~~~~iR~~~~i~~~~ri~~~g~~y~I~~v~~~~-~~~--~~~l~i~~~~ 103 (109)
T 2kca_A 51 QLQTPIGYNIYTPYDDRIDKKMRVIYRGKIVTFIGDPVDL-SGL--QEITRIKGKE 103 (109)
T ss_dssp CCCCCCEEEEEEESCCCSSSSEEEEETTEEEEEEEEEEEC-CTT--TCEEEEEEEC
T ss_pred hheeeEEEEEEEEcCCCCCCccEEEECCEEEEEEEeccCc-ccC--cEEEEEEEEE
Confidence 3334444443 2 3589999999999999999987 544 233 2455555543
No 34
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=26.43 E-value=61 Score=21.64 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=23.3
Q ss_pred ccCCCceeeEEE-eccccCCceEEEEcC-----eeEEEEEe
Q 031387 11 KADAGASKTFPQ-QAGTIRKNGYIVIKN-----RPCKVVEV 45 (160)
Q Consensus 11 ~~~~~~s~t~~i-~~~~lkkG~~i~i~g-----~p~~Vve~ 45 (160)
+|..+.|.+-|. +.+.++.|+.|+--. -||+|+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~F~vGmkLEA~D~~~~~~~a~i~~v 43 (88)
T 2eqm_A 3 SGSSGMSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKI 43 (88)
T ss_dssp CCCCSCTTSCCSCSSCCCCSSCEEEEECTTSCEEEEEEEEE
T ss_pred CCcCCcccCCCCCCcCcCCCCCEEEEEcCCCCeeEEEEEEE
Confidence 455566666664 668899999996554 35555544
No 35
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A* 1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A 1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Probab=26.13 E-value=1e+02 Score=21.82 Aligned_cols=46 Identities=9% Similarity=-0.065 Sum_probs=35.2
Q ss_pred EEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEecCCCcEEE
Q 031387 59 HFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSL 104 (160)
Q Consensus 59 ~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~d~d~~~~f 104 (160)
++.++..-+.+..+.+|+.++.++...++-+.++-++.-+++.++.
T Consensus 47 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 92 (132)
T 1ifc_A 47 KFTVKESSNFRNIDVVFELGVDFAYSLADGTELTGTWTMEGNKLVG 92 (132)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 3677788888999999999999998888877776665533446665
No 36
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} SCOP: b.60.1.2
Probab=25.33 E-value=1.1e+02 Score=21.63 Aligned_cols=46 Identities=9% Similarity=-0.052 Sum_probs=36.1
Q ss_pred EEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEecCCCcEEE
Q 031387 59 HFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSL 104 (160)
Q Consensus 59 ~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~d~d~~~~f 104 (160)
++.++..-+.+..+.+|+-++.++...++-+.++-++.-+++.++.
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1o8v_A 50 KYKMRSESTFKTTECSFKLGEKFKEVTPDSREVASLITVENGVMKH 95 (134)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 4677788889999999999999998888877777666533446666
No 37
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Probab=25.27 E-value=1.3e+02 Score=21.35 Aligned_cols=46 Identities=11% Similarity=-0.010 Sum_probs=36.0
Q ss_pred EEEEEEccCCcEEEEeecCCCceecce--EEEeeeEEEEecCCCcEEE
Q 031387 59 HFVGIDIFNGKKLEDIVPSSHNCDAPH--VTRTDYQLIDISEDGFVSL 104 (160)
Q Consensus 59 ~~k~knl~TG~~~e~tf~s~~~ve~~~--ve~~~~qyly~d~d~~~~f 104 (160)
++.++..-+.+..+.+|.-++.++... ++-+.++-++.-+++.++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~~~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1ggl_A 48 HMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVC 95 (134)
T ss_dssp EEEEEEECSSCCEEEEEETTSCEEEEETTTTSEEEEEEEEECSSSEEE
T ss_pred EEEEEEEcCCceEEEEeeCCCcEEEEccCCCCcEeeeEEEEECCEEEE
Confidence 367778888889999999999999888 8877777666544446766
No 38
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=24.18 E-value=2e+02 Score=22.90 Aligned_cols=90 Identities=13% Similarity=0.156 Sum_probs=52.2
Q ss_pred eeEEEeccccCCceEEEEcCeeEEEEEeeeecCCCCcccEEEEEEEEccCCcEEEEeecCCCcee--cceEEEeeeEEEE
Q 031387 18 KTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCD--APHVTRTDYQLID 95 (160)
Q Consensus 18 ~t~~i~~~~lkkG~~i~i~g~p~~Vve~~~~kpGKhG~A~v~~k~knl~TG~~~e~tf~s~~~ve--~~~ve~~~~qyly 95 (160)
.+||-....+-.|..+- +|.+|. ..|..|+. ++...|+.||++....--...-+- +.....+=||.-.
T Consensus 35 ~~~phd~~~ftqGL~~~-~~~Lye-------stG~~g~S--~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw 104 (262)
T 3nol_A 35 HSYPHDTKAFTEGFFYR-NGYFYE-------STGLNGRS--SIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTW 104 (262)
T ss_dssp EEEECCTTCEEEEEEEE-TTEEEE-------EEEETTEE--EEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEES
T ss_pred EEecCCCCcccceEEEE-CCEEEE-------ECCCCCCc--eEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEe
Confidence 47788888888898776 777663 12333434 466779999998766543332222 2233344455544
Q ss_pred ecCCCcEEEecCCCCce-ecccCCc
Q 031387 96 ISEDGFVSLLTETGNTK-DDLRLPT 119 (160)
Q Consensus 96 ~d~d~~~~fMd~ety~~-Eqi~l~~ 119 (160)
. ++.....|.+|+.. .+|+++.
T Consensus 105 ~--~~~v~v~D~~t~~~~~ti~~~~ 127 (262)
T 3nol_A 105 K--NGLGFVWNIRNLRQVRSFNYDG 127 (262)
T ss_dssp S--SSEEEEEETTTCCEEEEEECSS
T ss_pred e--CCEEEEEECccCcEEEEEECCC
Confidence 3 33677778777633 3455544
No 39
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=23.90 E-value=1.2e+02 Score=21.55 Aligned_cols=46 Identities=9% Similarity=-0.090 Sum_probs=35.2
Q ss_pred EEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEecCCCcEEE
Q 031387 59 HFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSL 104 (160)
Q Consensus 59 ~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~d~d~~~~f 104 (160)
++.++..-+.+..+.+|+-++.++...++-+.++-++.-+++.++.
T Consensus 51 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 96 (135)
T 1b56_A 51 NLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQ 96 (135)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEEECCCCCeEEEEEEEECCEEEE
Confidence 3677788888999999999999998888877777665533335655
No 40
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=23.19 E-value=1.3e+02 Score=21.31 Aligned_cols=47 Identities=4% Similarity=-0.183 Sum_probs=35.4
Q ss_pred EEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEecCCCcEEEe
Q 031387 59 HFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLL 105 (160)
Q Consensus 59 ~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~d~d~~~~fM 105 (160)
++.++...+.+..+.+|+-++.++...++-+.++-+..-+++.++..
T Consensus 48 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 94 (133)
T 3ppt_A 48 SWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMIQD 94 (133)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEEE
T ss_pred EEEEEEEeCCccEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEEEE
Confidence 46677888888999999999999988887777766654434466543
No 41
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding protein, BABP, fatty acid-binding PR FABP, cholic acid cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB: 2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Probab=23.01 E-value=94 Score=21.80 Aligned_cols=47 Identities=11% Similarity=0.097 Sum_probs=36.4
Q ss_pred EEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEecCCCcEEEe
Q 031387 59 HFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLL 105 (160)
Q Consensus 59 ~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~d~d~~~~fM 105 (160)
++.++..-+.+..+.+|+.++.++...++-+.++-++.-+++.++..
T Consensus 47 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~kLv~~ 93 (126)
T 2qo4_A 47 DFTITSKTPGKTVTNSFTIGKEAEITTMDGKKLKCIVKLDGGKLVCR 93 (126)
T ss_dssp EEEEEEEETTEEEEEEEETTBEEEEECTTSCEEEEECEEETTEEEEE
T ss_pred EEEEEEEcCCceEEEEeeCCCcEEEECCCCCEeEEEEEEECCEEEEE
Confidence 36677778888999999999999988888887776665434467664
No 42
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=22.79 E-value=1.5e+02 Score=20.92 Aligned_cols=46 Identities=9% Similarity=-0.076 Sum_probs=35.5
Q ss_pred EEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEecCC-CcEEE
Q 031387 59 HFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISED-GFVSL 104 (160)
Q Consensus 59 ~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~d~d-~~~~f 104 (160)
++.++..-+.+..+.+|+-++.++...++-+.++-++.-++ +.++.
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~ 96 (133)
T 1ftp_A 50 KFKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKSTITQDGPNKLVH 96 (133)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEECSSSEEEE
T ss_pred EEEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEE
Confidence 46777888889999999999999988888777776655333 46666
No 43
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=22.74 E-value=1.2e+02 Score=22.37 Aligned_cols=16 Identities=6% Similarity=0.275 Sum_probs=14.2
Q ss_pred EEeccccCCceEEEEc
Q 031387 21 PQQAGTIRKNGYIVIK 36 (160)
Q Consensus 21 ~i~~~~lkkG~~i~i~ 36 (160)
.+.|++||+|+.|.+-
T Consensus 105 ~~~A~eLk~GD~v~v~ 120 (185)
T 2lcj_A 105 EKRAFEVKEGDKVLVS 120 (185)
T ss_dssp EEEGGGCCTTCEEEEC
T ss_pred EEEHHHCCCCCEEEEc
Confidence 5899999999999874
No 44
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=22.56 E-value=1.2e+02 Score=21.37 Aligned_cols=46 Identities=9% Similarity=-0.018 Sum_probs=35.6
Q ss_pred EEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEecCCCcEEE
Q 031387 59 HFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSL 104 (160)
Q Consensus 59 ~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~d~d~~~~f 104 (160)
++.++..-+.+..+.+|+.++.++...++-+.++-++.-+++.++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 93 (132)
T 1mdc_A 48 SYSNTSTGGGGAKTVSFKSGVEFDDVIGAGDSVKSMYTVDGNVVTH 93 (132)
T ss_dssp EEEEEEESTTCCEEEEECTTCCEEEEETTTEEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceeEEEEeCCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 3677788888899999999999998888878777666533446665
No 45
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=22.39 E-value=1.4e+02 Score=21.44 Aligned_cols=46 Identities=7% Similarity=-0.019 Sum_probs=35.0
Q ss_pred EEEEEEccCCcEEEEeecCCCceec--ceEEEeeeEEEEecCCCcEEE
Q 031387 59 HFVGIDIFNGKKLEDIVPSSHNCDA--PHVTRTDYQLIDISEDGFVSL 104 (160)
Q Consensus 59 ~~k~knl~TG~~~e~tf~s~~~ve~--~~ve~~~~qyly~d~d~~~~f 104 (160)
++.++..-+.+..+.+|+-++.++. ..++-+.++-++.-+++.++.
T Consensus 52 ~~tikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv~ 99 (141)
T 2rcq_A 52 NFKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVC 99 (141)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCeEEeeeecCCCCEEEEEEEEeCCEEEE
Confidence 4667788889999999999999999 777777776555533446666
No 46
>1y43_B Aspergillopepsin II heavy chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} SCOP: b.29.1.20
Probab=22.05 E-value=1.9e+02 Score=21.75 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=31.4
Q ss_pred EeccccCCceEEEEcCeeEEEEEeeeecCCCCcccEEEEEEEEccCCcEEEEeecC
Q 031387 22 QQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPS 77 (160)
Q Consensus 22 i~~~~lkkG~~i~i~g~p~~Vve~~~~kpGKhG~A~v~~k~knl~TG~~~e~tf~s 77 (160)
++.-.+++|+.|.+. +....+++ | .+.+.|+-||+.+.+++.+
T Consensus 52 ~~~~~v~~GD~i~~t--------V~~~s~~~-g----~~tleN~ttg~~~t~t~t~ 94 (173)
T 1y43_B 52 FSDITISEGDSIKVT--------VEATSKSS-G----SATVENLTTGQSVTHTFSG 94 (173)
T ss_dssp ETTCCCCTTCEEEEE--------EEEEETTE-E----EEEEEETTTTEEEEEEECS
T ss_pred cccceeCCCCEEEEE--------EEEcCCCc-E----EEEEEECCCCEEEEEEEcC
Confidence 444567888887754 33444444 3 7899999999999999976
No 47
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=21.87 E-value=67 Score=23.30 Aligned_cols=41 Identities=12% Similarity=0.038 Sum_probs=27.9
Q ss_pred eeeEEEEecCCCcEEEecCCCCceecccCCcchhhHHHHHhhcc
Q 031387 89 TDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFA 132 (160)
Q Consensus 89 ~~~qyly~d~d~~~~fMd~ety~~Eqi~l~~~~~llg~~~~~l~ 132 (160)
-+++|+.-. +..++|+|.++-++|.+.|..=. ...+..||.
T Consensus 47 v~Vkyi~Ga-~P~LvL~D~~G~e~E~I~Iekw~--~d~I~efL~ 87 (129)
T 2a2p_A 47 LVMKHLPGA-DPELVLLSRNYQELERIPLSQMT--RDEINALVQ 87 (129)
T ss_dssp EEEEEESSC-CCEEEEECSSSCCCEEEECSSSC--HHHHHHHHH
T ss_pred eeEEEeCCC-CCEEEEecCCCCEEEEeecccCC--HHHHHHHHH
Confidence 345666654 45899999998888999887643 334555554
No 48
>2crq_A Mitochondrial translational initiation factor 3; ribosome, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.67 E-value=54 Score=23.06 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=20.4
Q ss_pred HHHHHhhccCCCeEEEEEEccCCcEE
Q 031387 124 LSQIKDGFAEGKDLVVTVMSSMGEEQ 149 (160)
Q Consensus 124 lg~~~~~l~eg~~v~v~~~~~mg~e~ 149 (160)
+..+..||.+|.-|.|++. =|+|.
T Consensus 33 ~k~a~kFLe~GdKVKvti~--RGRE~ 56 (112)
T 2crq_A 33 SKQIQQWIEKKYHVQVTIK--RRKDA 56 (112)
T ss_dssp HHHHHHHHHTTCEEEEEEE--CCTTC
T ss_pred HHHHHHHHHCCCEEEEEEE--CCccc
Confidence 5678999999999999988 58774
No 49
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=21.50 E-value=95 Score=22.55 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=21.2
Q ss_pred cCCCCcc------cEEEEEEEEccCCcEEEEeecCCCcee
Q 031387 49 KTGKHGH------AKCHFVGIDIFNGKKLEDIVPSSHNCD 82 (160)
Q Consensus 49 kpGKhG~------A~v~~k~knl~TG~~~e~tf~s~~~ve 82 (160)
+||++|+ +++++..+ .|+..--++||++.-.
T Consensus 87 ~pG~gg~laRsAGt~a~ii~k---e~~~~~vrLPSGe~r~ 123 (137)
T 1rl2_A 87 KPGRGGQLVRAAGTSAQVLGK---EGKYVIVRLASGEVRM 123 (137)
T ss_dssp STTSCEEESSSSSCCEEEEEE---ETTEEEEECTTSCEEE
T ss_pred cCCCCcEEEEeCCCeEEEEEE---cCCEEEEECCCCCeEE
Confidence 7888542 56677776 3777778888887543
No 50
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=21.38 E-value=1e+02 Score=20.62 Aligned_cols=19 Identities=11% Similarity=0.244 Sum_probs=14.9
Q ss_pred ccccCCceEEEEc---CeeEEE
Q 031387 24 AGTIRKNGYIVIK---NRPCKV 42 (160)
Q Consensus 24 ~~~lkkG~~i~i~---g~p~~V 42 (160)
.-+|++|++|.++ ++|..|
T Consensus 37 ll~L~~GdVI~Ld~~~~~~v~v 58 (96)
T 1o6a_A 37 VLEMIHGSIIELDKLTGEPVDI 58 (96)
T ss_dssp HHHCCTTCEEEEEEETTCCEEE
T ss_pred HhCCCCCCEEEeCCCCCCcEEE
Confidence 4578999999998 567666
No 51
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics, structural genomics consortium, SGC, lipid binding protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Probab=21.03 E-value=1.2e+02 Score=22.02 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=37.3
Q ss_pred EEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEe-cCCCcEEEe
Q 031387 59 HFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDI-SEDGFVSLL 105 (160)
Q Consensus 59 ~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~-d~d~~~~fM 105 (160)
.+.++..-+.+..+.+|+-++.++...++-+.++-++. +||+.++..
T Consensus 69 ~~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~egd~kLv~~ 116 (149)
T 2f73_A 69 HFKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVTT 116 (149)
T ss_dssp EEEEEEEETTEEEEEEEETTSEEEEECSSSCEEEEECEEETTTEEEEE
T ss_pred EEEEEEEeCCeEEEEEEeCCCcEEEEcCCCCEEEEEEEEeCCCcEEEE
Confidence 46788888899999999999999998888888877765 442567664
No 52
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=20.46 E-value=2e+02 Score=19.14 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=31.3
Q ss_pred EeccccCCceEEEEcCeeEEEEEeeeec--CCCCc--ccEEEEEEEEccCCcEEEEeecC
Q 031387 22 QQAGTIRKNGYIVIKNRPCKVVEVSTSK--TGKHG--HAKCHFVGIDIFNGKKLEDIVPS 77 (160)
Q Consensus 22 i~~~~lkkG~~i~i~g~p~~Vve~~~~k--pGKhG--~A~v~~k~knl~TG~~~e~tf~s 77 (160)
.+.++|++|..+.+ .++|.+..-.+ ..|.| ..+..+.+.| .||.+.=.-|..
T Consensus 8 ~~I~~L~~g~~v~i---~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D-~TG~I~~t~w~~ 63 (115)
T 2k50_A 8 DTISKLEEGAETPV---TGRVMKISSPRTFTTRKGREGKLANVIIAD-DTGELRAVFWTE 63 (115)
T ss_dssp CCTTTCCTTCEEEE---EEEEEEECCCEECCCTTSSCCEEEEEEEEE-TTEEEEEEEETT
T ss_pred EEHHHCCCCCEeEE---EEEEEECCCceEEEcCCCCEEEEEEEEEEe-CCCeEEEEEeCc
Confidence 35789999988755 45666662222 22224 4677788888 788544333433
No 53
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=20.31 E-value=1.4e+02 Score=21.15 Aligned_cols=46 Identities=2% Similarity=-0.096 Sum_probs=35.3
Q ss_pred EEEEEEccCCcEEEEeecCCCceec--ceEEEeeeEEEEecCCCcEEE
Q 031387 59 HFVGIDIFNGKKLEDIVPSSHNCDA--PHVTRTDYQLIDISEDGFVSL 104 (160)
Q Consensus 59 ~~k~knl~TG~~~e~tf~s~~~ve~--~~ve~~~~qyly~d~d~~~~f 104 (160)
++.++..-+.+..+.+|+-++.++. ..++-+.++-++.-+++.++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1crb_A 48 HMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQC 95 (134)
T ss_dssp EEEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEecCCceEEEEEeCCCeeeeeeecCCCCEEEEEEEEECCEEEE
Confidence 3667788888999999999999999 888777776665533446665
No 54
>4a60_A Fatty acid-binding protein 9 testis lipid-binding protein, TLBP, testis-type fatty...; transport protein; 1.53A {Homo sapiens} PDB: 3nr3_A*
Probab=20.27 E-value=2e+02 Score=21.05 Aligned_cols=47 Identities=6% Similarity=-0.111 Sum_probs=35.9
Q ss_pred EEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEecCCCcEEEe
Q 031387 59 HFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLL 105 (160)
Q Consensus 59 ~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~d~d~~~~fM 105 (160)
++.++...|.+..+.+|.-++.++....+-+.++-++.-+++.++..
T Consensus 71 ~~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg~kLv~~ 117 (154)
T 4a60_A 71 MMTIRTESSFQDTKISFKLGEEFDETTADNRKVKSTITLENGSMIHV 117 (154)
T ss_dssp EEEEEEEETTEEEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEEEE
Confidence 36777888889999999999999988878777776655444466543
No 55
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=20.16 E-value=1.4e+02 Score=21.11 Aligned_cols=47 Identities=9% Similarity=-0.074 Sum_probs=34.6
Q ss_pred EEEEEEccCCcEEEEeecCCCceecceEEEeeeEEEEecCCCcEEEe
Q 031387 59 HFVGIDIFNGKKLEDIVPSSHNCDAPHVTRTDYQLIDISEDGFVSLL 105 (160)
Q Consensus 59 ~~k~knl~TG~~~e~tf~s~~~ve~~~ve~~~~qyly~d~d~~~~fM 105 (160)
++.++..-+.+..+.+|+-++.++.-..+-+.++-++.-+++.++..
T Consensus 50 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 96 (133)
T 4a1y_A 50 IITIRTESTFKNTEISFQLGQEFEETTADNRKTKSIVTLQRGSLNQV 96 (133)
T ss_dssp EEEEEEEETTEEEEEEECTTBCEEEECTTCCEEEEEEEEETTEEEEE
T ss_pred EEEEEEecCCccEEEEEEcCCcEEEEcCCCCEEEEEEEEcCCEEEEE
Confidence 35666777788899999999999988888888876665434466543
Done!