BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031391
(160 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95562|SFT2B_HUMAN Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1
Length = 160
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 92/152 (60%), Gaps = 5/152 (3%)
Query: 3 KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIK- 61
KLK++++G + + S L + + SLS++ R+ F AC G++C L ++ P K
Sbjct: 3 KLKKVLSGQDTEDRSGLSEVVEA-SSLSWSTRIKGFIACFAIGILCSLLGTVLLWVPRKG 61
Query: 62 ---FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLIHS 118
FA+ +TFGN+ ++GST F++GP +Q+ MF+ R+ AT + L+C + L A H+
Sbjct: 62 LHLFAVFYTFGNIASIGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALTLCSAFWWHN 121
Query: 119 KILTILAIICEICALLWYSLSYIPFARRMISE 150
K L ++ I + AL WYSLS+IPFAR + +
Sbjct: 122 KGLALIFCILQSLALTWYSLSFIPFARDAVKK 153
>sp|Q8VD57|SFT2B_MOUSE Vesicle transport protein SFT2B OS=Mus musculus GN=Sft2d2 PE=1 SV=1
Length = 159
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 92/152 (60%), Gaps = 6/152 (3%)
Query: 3 KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIK- 61
KLK++++G + + S L + + SLS+ R+ F AC G++C L ++ P K
Sbjct: 3 KLKKVLSGQDTEDRSGLSEVVEA-SSLSWGTRIKGFIACFALGILCSVLGTLLLWVPRKG 61
Query: 62 ---FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLIHS 118
FA+ +T GN++++GST F++GP +Q+ MF+ R+ AT + L+C + L C+ + +
Sbjct: 62 LGLFAVFYTLGNIMSIGSTVFLMGPLKQLKRMFEPTRLIATILVLLCFALTL-CSAFLWN 120
Query: 119 KILTILAIICEICALLWYSLSYIPFARRMISE 150
K L ++ I + AL WYSLSYIP+AR + +
Sbjct: 121 KGLALIFCILQSLALTWYSLSYIPYARDAVKK 152
>sp|Q8WV19|SFT2A_HUMAN Vesicle transport protein SFT2A OS=Homo sapiens GN=SFT2D1 PE=1 SV=1
Length = 159
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 1 MWKLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP- 59
M KL+++++G ++ E+ D SLS+ R+ FA C + G+ L + P
Sbjct: 1 MEKLRRVLSGQDDEEQGLTAQVLDA-SSLSFNTRLKWFAICFVCGVFFSILGTGLLWLPG 59
Query: 60 -IK-FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLIH 117
IK FA+ +T GNL A+ ST F++GP +Q+ MF++ R+ AT V L+C + L AL H
Sbjct: 60 GIKLFAVFYTLGNLAALASTCFLMGPVKQLKKMFEATRLLATIVMLLCFIFTLCAALWWH 119
Query: 118 SKILTILAIICEICALLWYSLSYIPFARRMISELMIRLCDTEL 160
K L +L I + ++ WYSLSYIP+AR + +I+ C + L
Sbjct: 120 KKGLAVLFCILQFLSMTWYSLSYIPYAR----DAVIKCCSSLL 158
>sp|Q5SSN7|SFT2A_MOUSE Vesicle transport protein SFT2A OS=Mus musculus GN=Sft2d1 PE=2 SV=1
Length = 159
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 85/146 (58%), Gaps = 4/146 (2%)
Query: 3 KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIK- 61
KL+++++G ++ E+ D SLS+ R+ F C +AG+ FL + P
Sbjct: 3 KLRRVLSGQDDEEQGLTAQVLDA-SSLSFNTRLKWFVICFVAGIFFSFLGTGLLWLPNGM 61
Query: 62 --FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLIHSK 119
FA+ +T GNL A+ ST F++GP +Q+ MF++ R+ AT + L+C+V L AL K
Sbjct: 62 KLFAVFYTLGNLAALASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAALWWRKK 121
Query: 120 ILTILAIICEICALLWYSLSYIPFAR 145
L +L I + ++ WYSLSYIP+AR
Sbjct: 122 GLALLFCILQFLSMTWYSLSYIPYAR 147
>sp|Q5U3Y5|SFT2A_RAT Vesicle transport protein SFT2A OS=Rattus norvegicus GN=Sft2d1 PE=2
SV=1
Length = 159
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 87/148 (58%), Gaps = 4/148 (2%)
Query: 1 MWKLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP- 59
M KL+++++G ++ E+ D SLS+ R+ F C +AG+ L + P
Sbjct: 1 MEKLRRVLSGQDDEEQGLTAQVLDA-SSLSFNTRLKWFVICFVAGIFFSILGTGLLWLPN 59
Query: 60 -IK-FAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLIH 117
+K FA+ +T GNL A+ ST F++GP +Q+ MF++ R+ AT + L+C+V L AL
Sbjct: 60 GVKLFAVFYTLGNLAALASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAALWWR 119
Query: 118 SKILTILAIICEICALLWYSLSYIPFAR 145
K L +L I + ++ WYSLSYIP+AR
Sbjct: 120 KKGLALLFCILQFLSMTWYSLSYIPYAR 147
>sp|Q4FZV2|SFT2B_RAT Vesicle transport protein SFT2B OS=Rattus norvegicus GN=Sft2d2 PE=2
SV=1
Length = 157
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 89/150 (59%), Gaps = 4/150 (2%)
Query: 3 KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVF--VRPI 60
KLK++++G + + S L + + SLS++ R+ F C G++C L ++ R
Sbjct: 3 KLKKVLSGQDTEDRSGLSEVVE-SSSLSWSTRIKGFIVCFALGILCSLLGTLLLWVSRKG 61
Query: 61 KFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLIHSKI 120
FA+ +T GN+ ++GST F++GP +Q+ MF+ R+ A T+ ++ + +C+ + +K
Sbjct: 62 LFAVFYTLGNITSIGSTMFLMGPLKQLKRMFEPTRLIA-TILVLLFFVLTLCSAFLWNKG 120
Query: 121 LTILAIICEICALLWYSLSYIPFARRMISE 150
L ++ I + AL WYSLSYIP+AR + +
Sbjct: 121 LALIFCILQSLALTWYSLSYIPYARDAVKK 150
>sp|Q9P6K1|SFT2_SCHPO Protein transport protein sft2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sft2 PE=3 SV=1
Length = 201
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 28 SLSYTQRMYAFAACLLAGLVCM----FLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGP 83
SLS +R F CLL L C F+ ++ ++P KF +L+T G+LLAV A V G
Sbjct: 61 SLSRWERYMLFGICLLGSLACYAIACFMFPVLVLKPRKFVLLWTMGSLLAVLGFAIVQGF 120
Query: 84 AQQINMMFDSARIYATTVYLVCVVIALICALLIHSKILTILAIICEICALLWYSLSYIPF 143
+ R+ T Y V ++ +I + I S IL+I+ + I + + Y +++ PF
Sbjct: 121 VAHFRQLTTMERLPITLSYFVTLLATIIATIKIKSTILSIVFGVLHILSFVAYLIAFFPF 180
Query: 144 ARRMISELMIRLCDTEL 160
R +S L R+ L
Sbjct: 181 GTRTVS-LGTRMASRSL 196
>sp|P38166|SFT2_YEAST Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SFT2 PE=1 SV=1
Length = 215
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 9/144 (6%)
Query: 15 EESFLEDESDGICSLSYTQRMYAFAACLLAG-----LVCMFLSIIVFVRPIKFAILFTFG 69
+ ++D+ LS T+RM F C L G +C FL ++ +P KF +L+T G
Sbjct: 61 RQDLVQDQEPSWFQLSRTERMVLFV-CFLLGATACFTLCTFLFPVLAAKPRKFGLLWTMG 119
Query: 70 NLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLIHSKILTILAIICE 129
+LL V + ++GP + + R+ + + + + A + +LTI + E
Sbjct: 120 SLLFVLAFGVLMGPLAYLKHLTARERLPFSMFFFATCFMTIYFAAFSKNTVLTITCALLE 179
Query: 130 ICALLWYSLSYIPFAR---RMISE 150
+ A+++Y++SY PF RM+S
Sbjct: 180 LVAVIYYAISYFPFGATGLRMLSS 203
>sp|Q9CSV6|SFT2C_MOUSE Vesicle transport protein SFT2C OS=Mus musculus GN=Sft2d3 PE=2 SV=2
Length = 209
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 45 GLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFV-IGPAQQINMMFDSARIYATTVYL 103
GL ++ + ++ +R KFA+L++ G++LA S A + GPA + + +T Y
Sbjct: 86 GLAALY-APVLLLRARKFALLWSLGSVLAWASAALLRGGPACGRLLRGEETPSRSTLGYA 144
Query: 104 VCVVIALICALLIHSKILTILAIICEICALLWYSLSYIPFA 144
+ L AL++ S +LT L ++ ALL+ + +P+
Sbjct: 145 AALGATLYAALVLRSTVLTALGACAQVAALLYALIGLLPWG 185
>sp|Q5HYL7|TM196_HUMAN Transmembrane protein 196 OS=Homo sapiens GN=TMEM196 PE=2 SV=2
Length = 178
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 72 LAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLIHSKILTILAIICEIC 131
+AVG+ +F + + + DS+ +++ +L+C + ++CA S ++ IL C IC
Sbjct: 26 VAVGAVSFSLALREHKPQLGDSSPVWSGVCFLLCGICGILCAKK-KSGLVMILFSACCIC 84
Query: 132 ALLWYSLSY 140
L+ L++
Sbjct: 85 GLIGGILNF 93
>sp|A4IIU3|TM196_XENTR Transmembrane protein 196 OS=Xenopus tropicalis GN=tmem196 PE=2
SV=1
Length = 177
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 72 LAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLIHSKILTILAIICEIC 131
+AVG+ F +Q + DS+ +++ +L+C V + CA S ++ IL C IC
Sbjct: 26 VAVGAVTFFRVRMEQKPQLGDSSPVWSGACFLICGVCGIFCAKK-KSGLIMILFSACCIC 84
Query: 132 ALL 134
L+
Sbjct: 85 GLI 87
>sp|Q9CR60|GOT1B_MOUSE Vesicle transport protein GOT1B OS=Mus musculus GN=Golt1b PE=2 SV=1
Length = 138
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 69 GNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLI 116
GN+L V AFVIG + F ++ AT +L V + LI LI
Sbjct: 38 GNVLFVAGLAFVIGLERTFRFFFQRHKVKATGFFLGGVFVVLIGWPLI 85
>sp|Q9Y3E0|GOT1B_HUMAN Vesicle transport protein GOT1B OS=Homo sapiens GN=GOLT1B PE=1 SV=1
Length = 138
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 69 GNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLI 116
GN+L V AFVIG + F ++ AT +L V + LI LI
Sbjct: 38 GNVLFVAGLAFVIGLERTFRFFFQKHKMKATGFFLGGVFVVLIGWPLI 85
>sp|Q2YDE3|GOT1B_BOVIN Vesicle transport protein GOT1B OS=Bos taurus GN=GOLT1B PE=2 SV=1
Length = 138
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 69 GNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLI 116
GN+L V AFVIG + F ++ AT +L V + LI LI
Sbjct: 38 GNVLFVAGLAFVIGLERTFRFFFQKHKMKATGFFLGGVFVVLIGWPLI 85
>sp|Q2NKV8|GOT1A_BOVIN Vesicle transport protein GOT1A OS=Bos taurus GN=GOLT1A PE=2 SV=1
Length = 132
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 63 AILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALI 111
++L FGNLL + + +IG + + F + T+ +L VVI L+
Sbjct: 32 SVLLAFGNLLFLTGLSLIIGLRRTFSFFFQRHKFKGTSFFLGGVVIVLL 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.334 0.143 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,424,370
Number of Sequences: 539616
Number of extensions: 1766630
Number of successful extensions: 7292
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 7253
Number of HSP's gapped (non-prelim): 35
length of query: 160
length of database: 191,569,459
effective HSP length: 108
effective length of query: 52
effective length of database: 133,290,931
effective search space: 6931128412
effective search space used: 6931128412
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 56 (26.2 bits)