Query 031391
Match_columns 160
No_of_seqs 105 out of 376
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 13:26:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2887 Membrane protein invol 100.0 7.2E-49 1.6E-53 310.1 16.3 158 1-158 1-173 (175)
2 PF04178 Got1: Got1/Sft2-like 100.0 4.4E-35 9.5E-40 219.9 14.4 113 40-153 5-117 (118)
3 COG5102 SFT2 Membrane protein 100.0 1.7E-29 3.7E-34 199.7 12.3 131 25-155 58-192 (201)
4 KOG1743 Ferric reductase-like 93.2 0.14 3E-06 39.5 4.0 109 40-152 12-131 (137)
5 COG5120 GOT1 Membrane protein 91.9 0.31 6.7E-06 37.0 4.4 66 42-111 14-79 (129)
6 PRK11588 hypothetical protein; 91.2 3.6 7.9E-05 38.2 11.5 52 74-130 353-409 (506)
7 PF11026 DUF2721: Protein of u 71.4 13 0.00028 28.0 5.5 58 23-80 49-115 (130)
8 TIGR02908 CoxD_Bacillus cytoch 63.6 60 0.0013 24.3 7.5 55 84-138 14-76 (110)
9 PF13347 MFS_2: MFS/sugar tran 59.9 1.1E+02 0.0025 26.2 10.6 75 57-136 257-333 (428)
10 TIGR00819 ydaH p-Aminobenzoyl- 59.7 1.5E+02 0.0033 27.7 12.6 31 74-104 345-375 (513)
11 PF11085 YqhR: Conserved membr 50.7 1.3E+02 0.0029 24.2 11.6 118 21-140 9-154 (173)
12 PF04156 IncA: IncA protein; 48.1 1.1E+02 0.0024 23.8 7.2 24 30-54 1-24 (191)
13 PF10754 DUF2569: Protein of u 47.8 1.2E+02 0.0027 23.1 10.4 23 32-54 4-26 (149)
14 COG1288 Predicted membrane pro 47.1 1.8E+02 0.0039 27.1 9.2 49 25-75 267-317 (481)
15 KOG4320 Uncharacterized conser 45.4 62 0.0013 27.6 5.6 113 26-146 86-219 (253)
16 PF14145 YrhK: YrhK-like prote 43.7 93 0.002 20.5 5.3 41 43-87 13-54 (59)
17 PF04647 AgrB: Accessory gene 42.7 1.6E+02 0.0034 22.8 10.2 68 77-148 114-184 (185)
18 TIGR01666 YCCS hypothetical me 42.3 3.3E+02 0.0072 26.4 15.5 110 30-154 52-169 (704)
19 PRK10582 cytochrome o ubiquino 42.1 1.4E+02 0.0031 22.1 6.9 45 94-138 14-66 (109)
20 TIGR02847 CyoD cytochrome o ub 34.4 1.8E+02 0.0039 21.1 6.9 44 95-138 4-55 (96)
21 PF12676 DUF3796: Protein of u 34.2 1.6E+02 0.0034 22.1 5.8 57 90-146 51-111 (118)
22 COG5521 Predicted integral mem 31.3 2.4E+02 0.0052 24.3 7.0 49 58-106 172-220 (275)
23 TIGR00378 cax calcium/proton e 31.0 2.1E+02 0.0045 24.9 6.9 27 68-94 89-115 (349)
24 PRK15033 tricarballylate utili 30.7 4.1E+02 0.0089 24.1 12.0 85 60-145 272-360 (389)
25 PF10277 Frag1: Frag1/DRAM/Sfk 30.4 2.5E+02 0.0055 21.5 10.1 49 93-141 158-206 (215)
26 PF13150 DUF3989: Protein of u 30.0 1E+02 0.0022 21.9 4.0 19 26-44 19-37 (85)
27 PHA02692 hypothetical protein; 29.0 2E+02 0.0043 19.9 5.1 10 1-10 1-11 (70)
28 PF14851 FAM176: FAM176 family 27.7 1.6E+02 0.0036 23.2 5.1 38 50-87 8-47 (153)
29 PF05975 EcsB: Bacterial ABC t 27.7 4.2E+02 0.009 23.2 12.2 37 92-128 160-196 (386)
30 PF10031 DUF2273: Small integr 27.6 1.7E+02 0.0037 18.7 4.7 40 90-129 3-42 (51)
31 PF13131 DUF3951: Protein of u 26.9 80 0.0017 20.7 2.7 23 64-86 2-24 (53)
32 PF05915 DUF872: Eukaryotic pr 26.6 2.2E+02 0.0049 21.2 5.5 20 38-57 47-66 (115)
33 PF12575 DUF3753: Protein of u 26.4 2E+02 0.0044 20.0 4.8 8 1-8 1-8 (72)
34 PF11990 DUF3487: Protein of u 26.3 2.8E+02 0.0061 20.8 8.6 25 27-51 19-43 (121)
35 PHA02764 hypothetical protein; 26.2 5E+02 0.011 23.5 8.5 88 58-151 173-262 (399)
36 PF03606 DcuC: C4-dicarboxylat 25.3 5.1E+02 0.011 23.4 9.7 79 28-108 248-332 (465)
37 PF09323 DUF1980: Domain of un 25.1 3.4E+02 0.0073 21.2 7.9 46 37-82 3-52 (182)
38 TIGR02587 putative integral me 22.8 3.6E+02 0.0078 23.3 6.7 56 63-118 180-240 (271)
39 TIGR01667 YCCS_YHJK integral m 22.8 7E+02 0.015 24.1 11.7 53 30-84 52-104 (701)
40 PF10003 DUF2244: Integral mem 22.3 3.5E+02 0.0075 20.4 6.1 27 109-135 25-51 (140)
41 PF02990 EMP70: Endomembrane p 22.0 3.9E+02 0.0085 24.6 7.3 67 35-102 261-335 (521)
42 PRK12847 ubiA 4-hydroxybenzoat 21.8 4.7E+02 0.01 21.8 8.1 9 28-36 204-212 (285)
43 PRK10019 nickel/cobalt efflux 21.2 5.3E+02 0.012 22.1 11.3 58 57-114 209-268 (279)
44 PF12666 PrgI: PrgI family pro 20.9 2.9E+02 0.0063 18.9 8.1 12 24-35 12-23 (93)
45 PF13038 DUF3899: Domain of un 20.9 1.4E+02 0.0031 20.6 3.3 10 44-53 78-87 (92)
46 PF07787 DUF1625: Protein of u 20.6 3.6E+02 0.0079 22.1 6.2 26 18-43 171-196 (248)
47 PF03083 MtN3_slv: Sugar efflu 20.4 65 0.0014 21.9 1.4 76 67-144 2-83 (87)
48 TIGR02484 CitB CitB domain pro 20.2 6.5E+02 0.014 22.7 11.2 81 61-145 253-341 (372)
49 PF07664 FeoB_C: Ferrous iron 20.1 1.3E+02 0.0027 19.1 2.7 21 99-119 3-23 (54)
50 PF11118 DUF2627: Protein of u 20.1 3.3E+02 0.0071 19.2 6.4 52 32-84 1-61 (77)
No 1
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-49 Score=310.08 Aligned_cols=158 Identities=44% Similarity=0.771 Sum_probs=140.9
Q ss_pred Chhhh------hhhcCCh-hh---hhhhhhhhccc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHH
Q 031391 1 MWKLK------QLVAGDE-ER---EESFLEDESDG-ICSLSYTQRMYAFAACLLAGLVCMFLSIIVFV----RPIKFAIL 65 (160)
Q Consensus 1 m~~l~------~~~~~~~-~~---~e~~~~~~~~~-~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~l~----~p~kFa~l 65 (160)
|||++ +.+.++| .| ||++..+|.++ .++|||+||+++|++|++.|++|+.++.+++. .|+|||++
T Consensus 1 md~l~~~~~~~~~~sg~d~~~~~~~~~~~~~~~~~~~fsLs~~qR~~~F~~cl~~gv~c~~l~~~lf~v~~~~~~kFal~ 80 (175)
T KOG2887|consen 1 MDKLRSARSANDVLSGQDPGDHQTEERSFTSDLQESTFSLSRTQRIMGFGICLAGGVLCFLLAMVLFPVLVVSPRKFALL 80 (175)
T ss_pred CchhhhhHhhhhcccCCCCCccccccccchhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeehh
Confidence 78888 4443332 22 34455555554 59999999999999999999999999998764 57799999
Q ss_pred HHHHHHHHHhhHHHhhcHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccccHH
Q 031391 66 FTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLIHSKILTILAIICEICALLWYSLSYIPFAR 145 (160)
Q Consensus 66 ~TlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yi~sl~~TL~~a~~~~s~~l~ll~~i~Q~~al~wY~lSyiP~G~ 145 (160)
||+||+++++|++||+||++|+|||++|+|+++|+.|++++++|+|+|+++||++|+++++++|++|++||++|||||||
T Consensus 81 ~TlGnll~i~sf~fLmGP~~ql~~m~~p~Rl~~T~~~l~~~~~Tly~al~~ks~iLtllf~ilq~laliwYslSyiP~g~ 160 (175)
T KOG2887|consen 81 YTLGNLLAIGSFAFLMGPVSQLKHMFSPERLPATLSYLATMVLTLYVALWLKSKILTLLFCILQVLALIWYSLSYIPFGR 160 (175)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccC
Q 031391 146 RMISELMIRLCDT 158 (160)
Q Consensus 146 ~~~~~~~~~~~~~ 158 (160)
++++++.+.+...
T Consensus 161 ~gv~~~~s~~~~s 173 (175)
T KOG2887|consen 161 SGVSKLSSAFTSS 173 (175)
T ss_pred hHHHHHHHHHHHh
Confidence 9999999988654
No 2
>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events []. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein (P38166 from SWISSPROT) []. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments []. ; GO: 0016192 vesicle-mediated transport
Probab=100.00 E-value=4.4e-35 Score=219.91 Aligned_cols=113 Identities=40% Similarity=0.777 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHHHhhcHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhHH
Q 031391 40 ACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLIHSK 119 (160)
Q Consensus 40 ~c~~~g~~~~~ls~~~l~~p~kFa~l~TlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yi~sl~~TL~~a~~~~s~ 119 (160)
+|+++|.++.+++.++ .+|+|||++||+||+++++|++||+||++|+|+|+||+|+++|++|++++++|++++++.|++
T Consensus 5 ~~~~l~~~~~~~~~~~-~~~~kFa~l~tlGnil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~~l~~tl~~~~~~~~~ 83 (118)
T PF04178_consen 5 ICFFLSLIFFFLGVLL-FFPRKFAILYTLGNILFLASTFFLIGPKKQFKFMFSPKRLIATIIYFISLILTLYFAFILKSY 83 (118)
T ss_pred HHHHHHHHHHHhhhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHhhH
Confidence 4666666666666644 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Q 031391 120 ILTILAIICEICALLWYSLSYIPFARRMISELMI 153 (160)
Q Consensus 120 ~l~ll~~i~Q~~al~wY~lSyiP~G~~~~~~~~~ 153 (160)
.++++++++|++|++||++||+||||++++++++
T Consensus 84 ~l~llf~~~q~~al~wy~~s~iP~g~~~~~~~~~ 117 (118)
T PF04178_consen 84 GLTLLFSIFQFPALIWYLLSYIPFGRPGLKKFFS 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhc
Confidence 9999999999999999999999999999999986
No 3
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.7e-29 Score=199.66 Aligned_cols=131 Identities=22% Similarity=0.421 Sum_probs=120.8
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHhhHHHhhcHHHHHHhhcccchHHHHH
Q 031391 25 GICSLSYTQRMYAFAACLLAGLVCMFLSIIV----FVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATT 100 (160)
Q Consensus 25 ~~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~----l~~p~kFa~l~TlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~ 100 (160)
..++||+.||...|.+|+..+..|+.+..++ -.+|+||.++||+||++++.+++++.||.+|+|+++++||++.+.
T Consensus 58 s~F~Lsr~eR~vlF~~ClLGa~ac~a~~~fmfpVl~lkPrkFiLlwTmgslLfvl~Fg~l~Gf~ayl~~Lts~erlp~s~ 137 (201)
T COG5102 58 SEFGLSRFERAVLFSACLLGAGACSAFLYFMFPVLRLKPRKFILLWTMGSLLFVLMFGFLLGFRAYLEGLTSKERLPHSS 137 (201)
T ss_pred chhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccceeeehhHHHHHHHHHHHHHHhHHHHHHhhhhhhccchhH
Confidence 4689999999999999977777777555443 368999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhh
Q 031391 101 VYLVCVVIALICALLIHSKILTILAIICEICALLWYSLSYIPFARRMISELMIRL 155 (160)
Q Consensus 101 ~yi~sl~~TL~~a~~~~s~~l~ll~~i~Q~~al~wY~lSyiP~G~~~~~~~~~~~ 155 (160)
.|+++..+|+|+++..|++++++.|+++|++++++|+++|+|||.++++...+..
T Consensus 138 ~ff~t~l~Tiy~~~k~k~t~L~i~f~~l~vvsfi~y~itffPfGt~gvs~~~sm~ 192 (201)
T COG5102 138 WFFGTTLLTIYVVLKYKRTLLNIAFCFLQVVSFIMYSITFFPFGTSGVSSIISMF 192 (201)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876653
No 4
>KOG1743 consensus Ferric reductase-like proteins [Inorganic ion transport and metabolism]
Probab=93.21 E-value=0.14 Score=39.55 Aligned_cols=109 Identities=19% Similarity=0.329 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHHHhhcHHHHHHhhcccchHHHHHHHHHHHHHHHH----HHHH
Q 031391 40 ACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALI----CALL 115 (160)
Q Consensus 40 ~c~~~g~~~~~ls~~~l~~p~kFa~l~TlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yi~sl~~TL~----~a~~ 115 (160)
...+.|+.+++.+.+++..-. +-++||++.+.+..++.|.++-+.-.++|+|.--|+.+....+.+++ ..+.
T Consensus 12 g~TgfG~ff~l~Gii~ffD~a----LLa~GNlLfi~GvsliiG~~~t~~FF~r~~k~kGti~F~~G~l~vl~~wPi~Gm~ 87 (137)
T KOG1743|consen 12 GLTGFGVFFFLFGIILFFDKA----LLAMGNLLFIIGVSLIIGFRKTMQFFFRRQKMKGTISFLGGVLLVLFGWPIFGMI 87 (137)
T ss_pred EEechhHHHHHHHHHHHHhhH----HHHhcchHHHHhHHHhhcchhhhhhheehhhcceeeehhhhHHHHHHhhHHHHHH
Confidence 345667777777776655433 44569999999999999999999999999999999999999888874 4455
Q ss_pred hhHHHHHHHHH-----HHHHHHHH--HHHhhccccHHHHHHHHH
Q 031391 116 IHSKILTILAI-----ICEICALL--WYSLSYIPFARRMISELM 152 (160)
Q Consensus 116 ~~s~~l~ll~~-----i~Q~~al~--wY~lSyiP~G~~~~~~~~ 152 (160)
.-+|-+-+++- +++++--+ -=.+-+.|+=|+-+.+.+
T Consensus 88 lE~~Gff~LF~gF~P~i~~flrs~p~lG~i~~~p~i~~~~drl~ 131 (137)
T KOG1743|consen 88 LETYGFFVLFRGFFPVIVVFLRSIPVLGWILNLPGIRSFLDRLA 131 (137)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHcCccccccccCccHHHHHHHhc
Confidence 55655544443 33433211 113457777776655543
No 5
>COG5120 GOT1 Membrane protein involved in Golgi transport [Intracellular trafficking and secretion]
Probab=91.88 E-value=0.31 Score=36.95 Aligned_cols=66 Identities=18% Similarity=0.431 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHHHhhcHHHHHHhhcccchHHHHHHHHHHHHHHHH
Q 031391 42 LLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALI 111 (160)
Q Consensus 42 ~~~g~~~~~ls~~~l~~p~kFa~l~TlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yi~sl~~TL~ 111 (160)
..+|.+++..+.+++..-. +-++||++.+.+...+.|.+|-.--...|+|+--++.|.....+++|
T Consensus 14 t~~Gflffl~Gif~ffDra----Ll~lGNlL~iiG~fliags~ks~~fflRp~k~~Gsv~F~~G~ll~l~ 79 (129)
T COG5120 14 TSIGFLFFLVGIFLFFDRA----LLILGNLLMIIGIFLIAGSRKSMFFFLRPEKIQGSVIFAMGVLLLLY 79 (129)
T ss_pred eehhHHHHHHHHHHHhhhH----HHHhcCHHHHHHHHHHhcccceEEEEEchhHhhhhHHHHHHHHHHHH
Confidence 3456667777766554322 45679999999999999999888888899999999999999988875
No 6
>PRK11588 hypothetical protein; Provisional
Probab=91.22 E-value=3.6 Score=38.18 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=31.6
Q ss_pred HhhHHHhhcHHHHHHhhc-----ccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 031391 74 VGSTAFVIGPAQQINMMF-----DSARIYATTVYLVCVVIALICALLIHSKILTILAIICEI 130 (160)
Q Consensus 74 l~s~~FL~Gp~~q~k~m~-----~~~R~~~t~~yi~sl~~TL~~a~~~~s~~l~ll~~i~Q~ 130 (160)
+.+.+++.|..+++.-++ +.....-|++|..+-.+. ..++.+..+...++|.
T Consensus 353 m~~~aliig~A~~i~~il~~g~~~~g~iidTIv~~~~~~L~-----~lp~~~~ai~m~i~~~ 409 (506)
T PRK11588 353 MLAPALLVGFAKGILLLLGGGEPGDPSVLNTILNSAGGAIS-----GLPDAVSAWFMLLFQS 409 (506)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHH
Confidence 456677777777777777 555577777776663322 3344555555555554
No 7
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=71.37 E-value=13 Score=28.03 Aligned_cols=58 Identities=24% Similarity=0.295 Sum_probs=31.2
Q ss_pred ccccCCCCHHHHHHHHHHHH-HHHHHHHHHHHHH-hh-------hhhHHHHHHHHHHHHHHhhHHHh
Q 031391 23 SDGICSLSYTQRMYAFAACL-LAGLVCMFLSIIV-FV-------RPIKFAILFTFGNLLAVGSTAFV 80 (160)
Q Consensus 23 ~~~~~~LS~~qRi~gF~~c~-~~g~~~~~ls~~~-l~-------~p~kFa~l~TlGsil~l~s~~FL 80 (160)
..|...|.++-|++.-.+.+ ..+.++..++.+. +. .+.--+++|..|-++.++|...+
T Consensus 49 ~~el~~L~rR~~li~~ai~~~~~s~ll~~l~i~~lf~~~~~~~~~~~~~~~lF~~am~~l~~sl~~f 115 (130)
T PF11026_consen 49 RRELRILRRRARLIRRAITLATLSALLVCLVILLLFLSALLSIDLSWLVAILFVLAMLLLIASLVLF 115 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777655533 3333333333322 22 24455567777777666665544
No 8
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=63.61 E-value=60 Score=24.34 Aligned_cols=55 Identities=9% Similarity=0.135 Sum_probs=38.4
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHh
Q 031391 84 AQQINMMFDSARIYATTVYLVCVVIALICALLIH--------SKILTILAIICEICALLWYSL 138 (160)
Q Consensus 84 ~~q~k~m~~~~R~~~t~~yi~sl~~TL~~a~~~~--------s~~l~ll~~i~Q~~al~wY~l 138 (160)
..|-|+--+++..-+.+.|+.|+++|++.-...- .....+++.++|+.-=+.|=+
T Consensus 14 ~~~~~~~~~~~~k~yviGFiLSiiLT~I~F~~V~~~~l~~~~~~~~I~~lAvvQi~VqL~yFL 76 (110)
T TIGR02908 14 LEFQKAKNAEEMKKQIVTFALMIFLTLIAFFAVMLDEIDKWFVIPFILLLAAVQVAFQLYYFM 76 (110)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHhe
Confidence 3455666666777899999999999975433221 245677888899887666643
No 9
>PF13347 MFS_2: MFS/sugar transport protein
Probab=59.92 E-value=1.1e+02 Score=26.24 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=40.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhHHHhhcHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHh-hH-HHHHHHHHHHHHHHHH
Q 031391 57 VRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLI-HS-KILTILAIICEICALL 134 (160)
Q Consensus 57 ~~p~kFa~l~TlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yi~sl~~TL~~a~~~-~s-~~l~ll~~i~Q~~al~ 134 (160)
.++...+....++++..+.+..+. +.+.+-++++| .....++...+..+...+.. ++ ....+...+..+..-.
T Consensus 257 ~~~~~~~~~~~~~~~~~~v~~~~~----~~l~~r~gk~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~ 331 (428)
T PF13347_consen 257 GNEGLISIFMLIFFVASIVGSPLW----GRLSKRFGKKK-VYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGA 331 (428)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHH----HHHHHHcccee-ehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcc
Confidence 356666776666666666655444 23333345555 44555555555555555554 34 4445555555554444
Q ss_pred HH
Q 031391 135 WY 136 (160)
Q Consensus 135 wY 136 (160)
.+
T Consensus 332 ~~ 333 (428)
T PF13347_consen 332 FF 333 (428)
T ss_pred cc
Confidence 43
No 10
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=59.67 E-value=1.5e+02 Score=27.69 Aligned_cols=31 Identities=16% Similarity=-0.020 Sum_probs=18.6
Q ss_pred HhhHHHhhcHHHHHHhhcccchHHHHHHHHH
Q 031391 74 VGSTAFVIGPAQQINMMFDSARIYATTVYLV 104 (160)
Q Consensus 74 l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yi~ 104 (160)
+.+...+.|..+|+...++..++..++++-.
T Consensus 345 m~~~~vli~~A~~f~~~f~~s~i~~~ia~~~ 375 (513)
T TIGR00819 345 LAGFIVIIFFAAQFVAFFNWSNIGKFIAVGG 375 (513)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 4445566666666666666666666655544
No 11
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=50.66 E-value=1.3e+02 Score=24.25 Aligned_cols=118 Identities=17% Similarity=0.275 Sum_probs=68.4
Q ss_pred hhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhhHHHHHHH--------HHHHHHHhhHHHhhcHHHH
Q 031391 21 DESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVF------VRPIKFAILFT--------FGNLLAVGSTAFVIGPAQQ 86 (160)
Q Consensus 21 ~~~~~~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~l------~~p~kFa~l~T--------lGsil~l~s~~FL~Gp~~q 86 (160)
|++++-..+|..+|.. .+=+..|++-+.+..+.. ..|.-.+-.|. +|+++.+...+.+.=-.+.
T Consensus 9 eq~~~~~~~s~~~~~~--~iGf~gGliWs~v~yl~y~f~FT~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAl 86 (173)
T PF11085_consen 9 EQNQREKPMSFLAKVL--EIGFFGGLIWSLVRYLAYFFHFTEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAAL 86 (173)
T ss_pred hhcccCCCCcHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4444556778777765 444566777777776531 24554444443 3444444444333222222
Q ss_pred H-Hhhcccch-HHHHHHHHHHHHHHHHHHH------------HhhHHHHHHHHHHHHHHHHHHHHhhc
Q 031391 87 I-NMMFDSAR-IYATTVYLVCVVIALICAL------------LIHSKILTILAIICEICALLWYSLSY 140 (160)
Q Consensus 87 ~-k~m~~~~R-~~~t~~yi~sl~~TL~~a~------------~~~s~~l~ll~~i~Q~~al~wY~lSy 140 (160)
+ +-+++|-| ...-++|=+.+-+.++..+ .-.+++.|=+|.-+-+.-++=|++||
T Consensus 87 lY~~~l~k~~g~W~Gi~YG~~~W~ivF~~lnP~fp~~~~~~~l~~nTiiT~~CiyiLyGlFIGYSIsf 154 (173)
T PF11085_consen 87 LYYALLKKFKGPWPGILYGLAWWAIVFFVLNPIFPMIKPVTELDWNTIITTLCIYILYGLFIGYSISF 154 (173)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHhcccccCChhhhhCchhHHHHHHHHHHHHHHHhceeehh
Confidence 2 22344433 4567777777776666666 12467888888888888888888876
No 12
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=48.11 E-value=1.1e+02 Score=23.77 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 031391 30 SYTQRMYAFAACLLAGLVCMFLSII 54 (160)
Q Consensus 30 S~~qRi~gF~~c~~~g~~~~~ls~~ 54 (160)
|+.+|+. -+++.++|+++...+..
T Consensus 1 s~~~~i~-~i~~iilgilli~~gI~ 24 (191)
T PF04156_consen 1 SKKQRII-SIILIILGILLIASGIA 24 (191)
T ss_pred ChhHHHH-HHHHHHHHHHHHHHHHH
Confidence 4556665 66777888876555554
No 13
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=47.83 E-value=1.2e+02 Score=23.06 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031391 32 TQRMYAFAACLLAGLVCMFLSII 54 (160)
Q Consensus 32 ~qRi~gF~~c~~~g~~~~~ls~~ 54 (160)
.||+-|+++..++|.+...++..
T Consensus 4 ~~~IGGWL~lp~iglils~l~~~ 26 (149)
T PF10754_consen 4 PQGIGGWLILPAIGLILSPLSTS 26 (149)
T ss_pred CCCcchHHHHHHHHHHHHHHHHH
Confidence 47899999999999988777654
No 14
>COG1288 Predicted membrane protein [Function unknown]
Probab=47.11 E-value=1.8e+02 Score=27.07 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=27.5
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHh
Q 031391 25 GICSLSYTQRMYAFAACLLAGLVCMFLSIIV--FVRPIKFAILFTFGNLLAVG 75 (160)
Q Consensus 25 ~~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~--l~~p~kFa~l~TlGsil~l~ 75 (160)
+.-+.+++++++.++.++.. ...+.+... .+-|.-=+.+..+|-+..+.
T Consensus 267 ~~~~Ft~~~klvL~lf~l~f--~~mI~GV~~~GW~f~eiA~~Fl~mgIiig~I 317 (481)
T COG1288 267 GERPFTFRDKLVLLLFTLTF--VIMIWGVIVLGWWFPEIAAQFLAMGIIIGLI 317 (481)
T ss_pred cccccchhhhHHHHHHHHHH--HHHHHHhhhhceehHHHHHHHHHHHHHHHHH
Confidence 34468888888766554443 333333332 23566666666666665543
No 15
>KOG4320 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.44 E-value=62 Score=27.62 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=63.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHhhHHHhhcHHHHHHhhcccc---------h
Q 031391 26 ICSLSYTQRMYAFAACLLAGLVCMFLSIIVF-VRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSA---------R 95 (160)
Q Consensus 26 ~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~l-~~p~kFa~l~TlGsil~l~s~~FL~Gp~~q~k~m~~~~---------R 95 (160)
..++++.+-.+|+..|++++++--+--.-+. ..-..=.+.|..|++-.. ..+.+.+..+|. |
T Consensus 86 i~~~n~~~l~~G~~aalgl~vVaNfQet~i~~VH~~ga~laF~~g~LY~~--------~Qa~LSy~~~p~~~~~~v~~iR 157 (253)
T KOG4320|consen 86 IFKGNTVALWIGLAAALGLSVVANFQETAIRIVHDIGAVLAFGAGLLYMW--------FQAILSYQRDPNIPTLIVFYIR 157 (253)
T ss_pred hHHHHHHHHHHHHHHHhhheeeeecccccchhhhhhhhhHHhcchHHHHH--------HHHHHHhccCCCcccchhhHHH
Confidence 4488888888888888887665443322110 111111223333444221 223333333332 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHHHHHHHHHhhccccHHH
Q 031391 96 IYATTVYLVCVVIALICALLIHS-----------KILTILAIICEICALLWYSLSYIPFARR 146 (160)
Q Consensus 96 ~~~t~~yi~sl~~TL~~a~~~~s-----------~~l~ll~~i~Q~~al~wY~lSyiP~G~~ 146 (160)
...+++-.++.+.++.++-+.++ |.+=.+..+.|+++.+-+..-++-|+++
T Consensus 158 ~~lavi~~~~~~~~lv~s~v~~~~~~~W~p~d~~~~lh~isai~EW~~a~~F~~FilTF~~E 219 (253)
T KOG4320|consen 158 LVLAVICCASFFFMLVASSVFHSDKLPWNPRDPGYQLHAISAICEWVCAISFIFFILTFIYE 219 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcCCCCCCCCceeeehHHHHHHHHHHHHHHhhhhhhHHH
Confidence 55555555666666666665544 7788889999998776666555555554
No 16
>PF14145 YrhK: YrhK-like protein
Probab=43.74 E-value=93 Score=20.46 Aligned_cols=41 Identities=29% Similarity=0.558 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HhhHHHhhcHHHHH
Q 031391 43 LAGLVCMFLSIIVFVRPIKFAILFTFGNLLA-VGSTAFVIGPAQQI 87 (160)
Q Consensus 43 ~~g~~~~~ls~~~l~~p~kFa~l~TlGsil~-l~s~~FL~Gp~~q~ 87 (160)
.+|.+++.++..+++.|. .++.|..+. ++|..|+.+|.-++
T Consensus 13 ~~~~~~FliGSilfl~~~----~~~~g~wlFiiGS~~f~i~~~i~~ 54 (59)
T PF14145_consen 13 FIGGLLFLIGSILFLPES----LYTAGTWLFIIGSILFLIRPIIRL 54 (59)
T ss_pred HHHHHHHHHHHHHHcCch----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433322 224444443 44556666665433
No 17
>PF04647 AgrB: Accessory gene regulator B; InterPro: IPR006741 The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein [] involved in the proteolytic processing of AgrD, and may have both proteolytic and transporter activities, facilitating the export of the processed AgrD peptide []. ; GO: 0016020 membrane
Probab=42.72 E-value=1.6e+02 Score=22.77 Aligned_cols=68 Identities=15% Similarity=0.357 Sum_probs=28.9
Q ss_pred HHHhhcHHHHHHhhc-ccch--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccccHHHHH
Q 031391 77 TAFVIGPAQQINMMF-DSAR--IYATTVYLVCVVIALICALLIHSKILTILAIICEICALLWYSLSYIPFARRMI 148 (160)
Q Consensus 77 ~~FL~Gp~~q~k~m~-~~~R--~~~t~~yi~sl~~TL~~a~~~~s~~l~ll~~i~Q~~al~wY~lSyiP~G~~~~ 148 (160)
.....+|...=++-. +++| ..-....+..++..+.+.+...++. ....=..+.+|-+++-.|-|.+.+
T Consensus 114 ~i~~~aPv~~~~kpl~~~e~~~~~K~~~ii~~~i~~~i~~~~~~~~~----~~~~i~~~~~~~~~~l~p~~~k~~ 184 (185)
T PF04647_consen 114 IIIIYAPVDTPNKPLDSEEKRKKLKIKSIILVIILIIISLFLIFNYN----ISLIIILGILWQAILLLPIGYKFI 184 (185)
T ss_pred HHHHhcccccccCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHhhc
Confidence 455677875555543 2221 1112222223333333333333321 111222345555566667666543
No 18
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=42.29 E-value=3.3e+02 Score=26.41 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHHHhhcHHHHHHhhcccchHHHHHHHHHHHHHH
Q 031391 30 SYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIA 109 (160)
Q Consensus 30 S~~qRi~gF~~c~~~g~~~~~ls~~~l~~p~kFa~l~TlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yi~sl~~T 109 (160)
+++.|+...+++..++.+-++..-+++-.|--|+..-++.+..+ +..--.||+ ..++.+ ++++..
T Consensus 52 ~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~~l~~~tf~~--~mlga~G~R------------ya~Iaf-~tLlia 116 (704)
T TIGR01666 52 RLTGRLKNVIFTLICFSIASFSVELLFGKPWLFAVGLTVSTFGF--IMLGAVGQR------------YATIAF-GSLLVA 116 (704)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--HHHHHhhhh------------HHHHHH-HHHHHH
Confidence 57788888776655544443333223334555554443333322 233336663 334444 455555
Q ss_pred HHHHH-------HhhHHH-HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHh
Q 031391 110 LICAL-------LIHSKI-LTILAIICEICALLWYSLSYIPFARRMISELMIR 154 (160)
Q Consensus 110 L~~a~-------~~~s~~-l~ll~~i~Q~~al~wY~lSyiP~G~~~~~~~~~~ 154 (160)
+|..+ ++...+ +.+-..--=+++++|+.+-=--.-|+.+..++..
T Consensus 117 iytmlg~~~~~~w~~~pllll~GalwY~llsl~~~~l~p~rp~q~~LA~~y~~ 169 (704)
T TIGR01666 117 LYTMLGYIEVNVWFIQPVMLLCGTLWYSVVTLIVHLFFPNRPVQENLAKAFCQ 169 (704)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 55543 222222 2222222333444444433222357777776543
No 19
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=42.12 E-value=1.4e+02 Score=22.12 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHHHHHHHHH-Hhh-------HHHHHHHHHHHHHHHHHHHHh
Q 031391 94 ARIYATTVYLVCVVIALICAL-LIH-------SKILTILAIICEICALLWYSL 138 (160)
Q Consensus 94 ~R~~~t~~yi~sl~~TL~~a~-~~~-------s~~l~ll~~i~Q~~al~wY~l 138 (160)
++.-+.+.|+.|+++|...-. +.. .....+.+.++|++--+.|-+
T Consensus 14 s~k~yviGFiLSliLT~i~F~lv~~~~~~~~~~~~~i~~lA~vQi~VqL~~FL 66 (109)
T PRK10582 14 SVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQILVHLVCFL 66 (109)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHHHHHHHHh
Confidence 445678899999999964333 221 234566778899988877754
No 20
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=34.43 E-value=1.8e+02 Score=21.06 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHhh-------HHHHHHHHHHHHHHHHHHHHh
Q 031391 95 RIYATTVYLVCVVIALIC-ALLIH-------SKILTILAIICEICALLWYSL 138 (160)
Q Consensus 95 R~~~t~~yi~sl~~TL~~-a~~~~-------s~~l~ll~~i~Q~~al~wY~l 138 (160)
..-+-+.|+.|+++|... ..+.. .+...+.+.++|+.--+.|-+
T Consensus 4 ~k~yviGFiLsliLT~i~F~~v~~~~~~~~~~~~~i~~~A~iQi~vqL~~Fl 55 (96)
T TIGR02847 4 LKSYLIGFVLSVILTAIPFGLVMSGTLSKGLTLVIIIVLAVVQILVHLVFFL 55 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344678899999999643 33321 244567778899988777754
No 21
>PF12676 DUF3796: Protein of unknown function (DUF3796); InterPro: IPR024257 This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
Probab=34.21 E-value=1.6e+02 Score=22.07 Aligned_cols=57 Identities=26% Similarity=0.508 Sum_probs=38.1
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHhhccccHHH
Q 031391 90 MFDSARIYATTVYLVCVVIALICALL----IHSKILTILAIICEICALLWYSLSYIPFARR 146 (160)
Q Consensus 90 m~~~~R~~~t~~yi~sl~~TL~~a~~----~~s~~l~ll~~i~Q~~al~wY~lSyiP~G~~ 146 (160)
.-+.+|.-++..+.++++.+....+. .+..+.+++..+.=..+++-|++||.=|.++
T Consensus 51 f~~n~~kAa~~af~v~l~~~~ii~l~~~i~~~~~~~~~~i~i~~~i~l~vf~~~~~~ye~~ 111 (118)
T PF12676_consen 51 FYENVRKAASRAFFVALILLFIILLISMIFDNLELITILIAIAFAIALLVFAISYLYYEYR 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445566777777777766544442 3334567777788888889999998777654
No 22
>COG5521 Predicted integral membrane protein [Function unknown]
Probab=31.29 E-value=2.4e+02 Score=24.26 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHhhcHHHHHHhhcccchHHHHHHHHHHH
Q 031391 58 RPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCV 106 (160)
Q Consensus 58 ~p~kFa~l~TlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yi~sl 106 (160)
+|.-+..++..-+.+...++..+.|..+.+--|.++.|+..-.-|==+.
T Consensus 172 ka~i~lflvl~~s~i~~l~tfivagg~sffL~iTKrSrlfsiasFkE~~ 220 (275)
T COG5521 172 KAMIMLFLVLVVSMIQLLLTFIVAGGASFFLWITKRSRLFSIASFKEAA 220 (275)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeeehhhhhhhHHhHHHHH
Confidence 4667777777888888888899999999999999999977655553333
No 23
>TIGR00378 cax calcium/proton exchanger (cax).
Probab=31.00 E-value=2.1e+02 Score=24.95 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=21.3
Q ss_pred HHHHHHHhhHHHhhcHHHHHHhhcccc
Q 031391 68 FGNLLAVGSTAFVIGPAQQINMMFDSA 94 (160)
Q Consensus 68 lGsil~l~s~~FL~Gp~~q~k~m~~~~ 94 (160)
+.|++.+.+.+++.||.++=++.++++
T Consensus 89 i~NllLilGls~liggl~~~~q~~~~~ 115 (349)
T TIGR00378 89 LGNLLLVLGLCFFFGGLNYKQQTFNQT 115 (349)
T ss_pred HHhHHHHHHHHHHHhccccceeecCHH
Confidence 456677899999999998777777665
No 24
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=30.73 E-value=4.1e+02 Score=24.09 Aligned_cols=85 Identities=8% Similarity=0.055 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHhhHHHhhcHHHHHHhhcccch-HHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHH
Q 031391 60 IKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSAR-IYATTVYLVCVVIALICALLI---HSKILTILAIICEICALLW 135 (160)
Q Consensus 60 ~kFa~l~TlGsil~l~s~~FL~Gp~~q~k~m~~~~R-~~~t~~yi~sl~~TL~~a~~~---~s~~l~ll~~i~Q~~al~w 135 (160)
...-++.++|.|..+.+..-+.-.+...+..-+..+ ...=-.+++.+.+|=.+.+.+ +..-... ....=-+..++
T Consensus 272 s~~klLg~vGgi~LliG~~gl~~~~~R~d~~~~~~~~~~~D~~Fl~lL~lv~~TGL~~~~~R~t~am~-~~l~lHL~~V~ 350 (389)
T PRK15033 272 SLPVLLGTLGGIGLLIGPAGLLWLNLRRHPLHGDAAQKPMDRGFIALLFLTSASGLALLAGRDTSAMA-LLLALHLGVVM 350 (389)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHHHHHHHHHHHccccHHH-HHHHHHHHHHH
Confidence 467889999999888874332222222222211111 011122555555554455432 2221111 22223445677
Q ss_pred HHhhccccHH
Q 031391 136 YSLSYIPFAR 145 (160)
Q Consensus 136 Y~lSyiP~G~ 145 (160)
..+-|.||++
T Consensus 351 ~LF~~lPysK 360 (389)
T PRK15033 351 ALFLTLPYGK 360 (389)
T ss_pred HHHHHhhHHH
Confidence 7788899985
No 25
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=30.43 E-value=2.5e+02 Score=21.53 Aligned_cols=49 Identities=12% Similarity=0.170 Sum_probs=31.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 031391 93 SARIYATTVYLVCVVIALICALLIHSKILTILAIICEICALLWYSLSYI 141 (160)
Q Consensus 93 ~~R~~~t~~yi~sl~~TL~~a~~~~s~~l~ll~~i~Q~~al~wY~lSyi 141 (160)
.-|+..+++.+++.+...++-...+++..-..+.+.|+...++..+-+.
T Consensus 158 ~~r~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ai~Ew~~~~~~~~f~~ 206 (215)
T PF10277_consen 158 RLRLILLVISIICFISFIVFFILHNFYGAYSIFAIFEWVLVFSNILFFL 206 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655555544444567888899988877665443
No 26
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=30.04 E-value=1e+02 Score=21.86 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=14.1
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 031391 26 ICSLSYTQRMYAFAACLLA 44 (160)
Q Consensus 26 ~~~LS~~qRi~gF~~c~~~ 44 (160)
|-.||++||+..-+..+++
T Consensus 19 c~~Lsp~~R~~vvl~ml~~ 37 (85)
T PF13150_consen 19 CGRLSPKQRLRVVLVMLVL 37 (85)
T ss_pred HhcCCHHHHHHHHHHHHHH
Confidence 6699999999865554444
No 27
>PHA02692 hypothetical protein; Provisional
Probab=28.97 E-value=2e+02 Score=19.92 Aligned_cols=10 Identities=30% Similarity=0.259 Sum_probs=5.9
Q ss_pred Chhh-hhhhcC
Q 031391 1 MWKL-KQLVAG 10 (160)
Q Consensus 1 m~~l-~~~~~~ 10 (160)
|||| -..+|-
T Consensus 1 MDKLyaaifGV 11 (70)
T PHA02692 1 MDKLYAGVFGS 11 (70)
T ss_pred ChhHHHHHHHh
Confidence 8888 444443
No 28
>PF14851 FAM176: FAM176 family
Probab=27.69 E-value=1.6e+02 Score=23.15 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=27.5
Q ss_pred HHHHHHhh--hhhHHHHHHHHHHHHHHhhHHHhhcHHHHH
Q 031391 50 FLSIIVFV--RPIKFAILFTFGNLLAVGSTAFVIGPAQQI 87 (160)
Q Consensus 50 ~ls~~~l~--~p~kFa~l~TlGsil~l~s~~FL~Gp~~q~ 87 (160)
.++....+ +|.+||++|.+|-...++=+..+..++--+
T Consensus 8 sLaaya~I~~~PE~~aLYFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 8 SLAAYAHIRDNPERFALYFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 34444333 799999999999888887777777666444
No 29
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=27.68 E-value=4.2e+02 Score=23.19 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=27.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 031391 92 DSARIYATTVYLVCVVIALICALLIHSKILTILAIIC 128 (160)
Q Consensus 92 ~~~R~~~t~~yi~sl~~TL~~a~~~~s~~l~ll~~i~ 128 (160)
.+.|......+.++-.+..|..+...+....++..++
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (386)
T PF05975_consen 160 PKWRRWKRLLRLILNALILYLLLWLSPWLLLILALLL 196 (386)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888889998889999999887764444444433
No 30
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=27.64 E-value=1.7e+02 Score=18.71 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=25.5
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 031391 90 MFDSARIYATTVYLVCVVIALICALLIHSKILTILAIICE 129 (160)
Q Consensus 90 m~~~~R~~~t~~yi~sl~~TL~~a~~~~s~~l~ll~~i~Q 129 (160)
..++.|-...-.-++-+++.++..+-.-++++++++.++=
T Consensus 3 ~~~~~~~~iiG~~~G~ila~l~l~~GF~~tl~i~~~~~iG 42 (51)
T PF10031_consen 3 FWKNHRGKIIGGLIGLILALLILTFGFWKTLFILLFAAIG 42 (51)
T ss_pred HHHHCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554455555666667777777777778777776553
No 31
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=26.87 E-value=80 Score=20.67 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhHHHhhcHHHH
Q 031391 64 ILFTFGNLLAVGSTAFVIGPAQQ 86 (160)
Q Consensus 64 ~l~TlGsil~l~s~~FL~Gp~~q 86 (160)
++.|+|-++.-+-..|+.|+.++
T Consensus 2 iL~tiG~~~~~~~I~~lIgfity 24 (53)
T PF13131_consen 2 ILLTIGIILFTIFIFFLIGFITY 24 (53)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888999998654
No 32
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=26.56 E-value=2.2e+02 Score=21.15 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 031391 38 FAACLLAGLVCMFLSIIVFV 57 (160)
Q Consensus 38 F~~c~~~g~~~~~ls~~~l~ 57 (160)
-+.++++|.++.+++.+++.
T Consensus 47 a~~Lli~G~~li~~g~l~~~ 66 (115)
T PF05915_consen 47 AVFLLIFGTVLIIIGLLLFF 66 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44566667777777765543
No 33
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=26.40 E-value=2e+02 Score=19.96 Aligned_cols=8 Identities=38% Similarity=0.248 Sum_probs=5.6
Q ss_pred Chhhhhhh
Q 031391 1 MWKLKQLV 8 (160)
Q Consensus 1 m~~l~~~~ 8 (160)
||||....
T Consensus 1 MDKLyaai 8 (72)
T PF12575_consen 1 MDKLYAAI 8 (72)
T ss_pred ChhHHHHH
Confidence 89985544
No 34
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=26.31 E-value=2.8e+02 Score=20.79 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 031391 27 CSLSYTQRMYAFAACLLAGLVCMFL 51 (160)
Q Consensus 27 ~~LS~~qRi~gF~~c~~~g~~~~~l 51 (160)
-+||..|=...-.++++.|++..+.
T Consensus 19 rGlT~~El~~~a~~~~~~g~~~gl~ 43 (121)
T PF11990_consen 19 RGLTADELGLAAGVGFVAGLVVGLP 43 (121)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3899988655555555555544443
No 35
>PHA02764 hypothetical protein; Provisional
Probab=26.17 E-value=5e+02 Score=23.55 Aligned_cols=88 Identities=23% Similarity=0.320 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHHHHHHH--hhHHHhhcHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 031391 58 RPIKFAILFTFGNLLAV--GSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICALLIHSKILTILAIICEICALLW 135 (160)
Q Consensus 58 ~p~kFa~l~TlGsil~l--~s~~FL~Gp~~q~k~m~~~~R~~~t~~yi~sl~~TL~~a~~~~s~~l~ll~~i~Q~~al~w 135 (160)
..+.|.+..|+.+.+.+ ....|.--|. +...-.+..+--+-+.|++|-..|........-+=+.+++++ +..|
T Consensus 173 ~~~~f~~snt~~~a~~~~l~~~~fi~a~~-y~~~ei~n~~k~~~~gyf~s~~~~~~~~ii~sy~n~~il~~~----~~~w 247 (399)
T PHA02764 173 QYQNFTISNTLLSALLFDLSAFIFINAIS-YIAGEIKNIKKSSMIGYFVSYGIVAILSIIDSYSNLNILFAL----MPIW 247 (399)
T ss_pred EEcceeehHHHHHHHHHHHHHHHHhccHH-HHHHHhhcchhhhhhhhHHHHHHHHHHHHHHhhhhHHHHHHH----HHHH
Confidence 34567777777665543 3344445553 444433334445678899998888766665432335556555 8899
Q ss_pred HHhhccccHHHHHHHH
Q 031391 136 YSLSYIPFARRMISEL 151 (160)
Q Consensus 136 Y~lSyiP~G~~~~~~~ 151 (160)
| +||.|-..+.-++.
T Consensus 248 ~-~~y~~~~~~~~srl 262 (399)
T PHA02764 248 F-FSYMPIANKIQSRL 262 (399)
T ss_pred H-HhheeeecchHHHH
Confidence 9 69999776555444
No 36
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=25.27 E-value=5.1e+02 Score=23.43 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH---H-Hh-h-hhhHHHHHHHHHHHHHHhhHHHhhcHHHHHHhhcccchHHHHHH
Q 031391 28 SLSYTQRMYAFAACLLAGLVCMFLSI---I-VF-V-RPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTV 101 (160)
Q Consensus 28 ~LS~~qRi~gF~~c~~~g~~~~~ls~---~-~l-~-~p~kFa~l~TlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~ 101 (160)
+++.+|+++. +++.+.+++.+.++ . -. + -+.--++..-+|-+.-+..--=-++|.+..|..++.-+-.....
T Consensus 248 ~~~~~~~~~~--~~~~l~~~~li~g~~~~~~~~~~~~~~~~~~fl~~~ii~~~i~~~~~~~~~~~~~~F~~G~~~~~~~a 325 (465)
T PF03606_consen 248 KLTKRPKLYL--LLPVLPFVLLIYGFSFVIIKIKWYFPEIAALFLIIGIIIGLIRHRSGKSPNEIVKAFFKGMGDMLSFA 325 (465)
T ss_pred ccccccceee--hHHHHHHHHHHhchhhhhccccccHHHHHHHHHHHHHHHHHHHhhccCCHhHHHHHHHHHHHHHHHHH
Confidence 3778777654 44455555544431 0 01 1 12222333333333222221115578888888887766554444
Q ss_pred HHHHHHH
Q 031391 102 YLVCVVI 108 (160)
Q Consensus 102 yi~sl~~ 108 (160)
.++++..
T Consensus 326 ~vVgla~ 332 (465)
T PF03606_consen 326 LVVGLAR 332 (465)
T ss_pred HHHHHHH
Confidence 4444443
No 37
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=25.13 E-value=3.4e+02 Score=21.23 Aligned_cols=46 Identities=17% Similarity=0.342 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHHHHhhHHHhhc
Q 031391 37 AFAACLLAGLVCMFLSI----IVFVRPIKFAILFTFGNLLAVGSTAFVIG 82 (160)
Q Consensus 37 gF~~c~~~g~~~~~ls~----~~l~~p~kFa~l~TlGsil~l~s~~FL~G 82 (160)
-++++++.|++++-+-. ...++|+-..+++.-+-++.+.+..-+..
T Consensus 3 r~liL~~~~~l~~~l~~sG~i~~YI~P~~~~~~~~a~i~l~ilai~q~~~ 52 (182)
T PF09323_consen 3 RFLILLGFGILLFYLILSGKILLYIHPRYIPLLYFAAILLLILAIVQLWR 52 (182)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666654433 24579998888887777777766655443
No 38
>TIGR02587 putative integral membrane protein TIGR02587. Members of this family are found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus in a conserved two-gene neighborhood. This family, as defined, includes some members of COG4711 but is narrower and strictly bacterial. Members appear to span the membrane seven times.
Probab=22.80 E-value=3.6e+02 Score=23.29 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhHHHhhcHHHHHHhhc-----ccchHHHHHHHHHHHHHHHHHHHHhhH
Q 031391 63 AILFTFGNLLAVGSTAFVIGPAQQINMMF-----DSARIYATTVYLVCVVIALICALLIHS 118 (160)
Q Consensus 63 a~l~TlGsil~l~s~~FL~Gp~~q~k~m~-----~~~R~~~t~~yi~sl~~TL~~a~~~~s 118 (160)
.+.-.+.|+...=...|=.|++.|=|+-- +..-..+...|++|+....+.-..++.
T Consensus 180 ~~~li~~SL~i~y~iVf~~gF~~q~~~~~~~g~~q~~~~eT~~~Y~vsL~~s~~mL~~F~r 240 (271)
T TIGR02587 180 IFALILASLVIMHAFVYQLGFRGQHKRRQGKGIFQRFLRETTIGYLVSLLASAYMLWTFQR 240 (271)
T ss_pred HHHHHHHHHHHHHHHhhccccCccccccccCCchhccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445678888888899999998887743 444466788999999999887776665
No 39
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=22.77 E-value=7e+02 Score=24.12 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhHHHhhcHH
Q 031391 30 SYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSTAFVIGPA 84 (160)
Q Consensus 30 S~~qRi~gF~~c~~~g~~~~~ls~~~l~~p~kFa~l~TlGsil~l~s~~FL~Gp~ 84 (160)
+++.|+...+++..++.+-++..-.++..|--|+. .+.-..+..+..--.|++
T Consensus 52 ~~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~~~--~l~~~tf~~~mlga~G~r 104 (701)
T TIGR01667 52 RLTGRLKNLIITLSCFSIASFLVQLLFPKPWLFPF--LLTLLTFGFILLGALGQR 104 (701)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH--HHHHHHHHHHHHHHhhhh
Confidence 56778887766655544433333323333444443 333333344444556665
No 40
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=22.27 E-value=3.5e+02 Score=20.38 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=18.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 031391 109 ALICALLIHSKILTILAIICEICALLW 135 (160)
Q Consensus 109 TL~~a~~~~s~~l~ll~~i~Q~~al~w 135 (160)
+.-.++.....+.++.|..+|+.++.|
T Consensus 25 ~~a~~f~~~GaW~Vl~F~glev~~l~~ 51 (140)
T PF10003_consen 25 IIAIAFLLMGAWPVLPFAGLEVLALWY 51 (140)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 333445556678899999999776554
No 41
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=22.02 E-value=3.9e+02 Score=24.58 Aligned_cols=67 Identities=16% Similarity=0.320 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHHHHHHhhHHHhhcHHH-HHHhhcccchHHHHHHH
Q 031391 35 MYAFAACLLAGLVCMFLSIIV-------FVRPIKFAILFTFGNLLAVGSTAFVIGPAQ-QINMMFDSARIYATTVY 102 (160)
Q Consensus 35 i~gF~~c~~~g~~~~~ls~~~-------l~~p~kFa~l~TlGsil~l~s~~FL~Gp~~-q~k~m~~~~R~~~t~~y 102 (160)
...+.++.+.|+=+.++.... +..|..=+-+.|.+- ...+-+++..|..+ .+-++++.+|+....+.
T Consensus 261 ~~lls~lvG~G~Qll~~~~~~~~~a~~g~~~~~~rg~l~t~~i-~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~l 335 (521)
T PF02990_consen 261 PMLLSALVGTGIQLLFMALVTLFFAALGFLSPNNRGSLLTAAI-ILYALTSFIAGYVSARLYKSFGGKKWKKNSIL 335 (521)
T ss_pred chHHHhHhcchhhhhHHHHHHHHHHHhhhccccCcchHHHHHH-HHHHHHhhHHHHHHHHHHHHcCCCceeehhhH
Confidence 345777777777666555432 246665444555433 33334556677653 33345566565544433
No 42
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=21.79 E-value=4.7e+02 Score=21.75 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=3.4
Q ss_pred CCCHHHHHH
Q 031391 28 SLSYTQRMY 36 (160)
Q Consensus 28 ~LS~~qRi~ 36 (160)
.+..+.+..
T Consensus 204 ~~G~~~a~~ 212 (285)
T PRK12847 204 YFGNKTRKY 212 (285)
T ss_pred HhccccHHH
Confidence 333433333
No 43
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=21.20 E-value=5.3e+02 Score=22.14 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=39.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhHHHhh--cHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 031391 57 VRPIKFAILFTFGNLLAVGSTAFVI--GPAQQINMMFDSARIYATTVYLVCVVIALICAL 114 (160)
Q Consensus 57 ~~p~kFa~l~TlGsil~l~s~~FL~--Gp~~q~k~m~~~~R~~~t~~yi~sl~~TL~~a~ 114 (160)
..---.++.|++|..+.+...+.+. +.+.-.++.....|.....-|+.+++.+++-..
T Consensus 209 ~~Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~ 268 (279)
T PRK10019 209 TLGATLVLSFSIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVY 268 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788999999999999888886 334344444446666665667777766655543
No 44
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=20.90 E-value=2.9e+02 Score=18.95 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=8.8
Q ss_pred cccCCCCHHHHH
Q 031391 24 DGICSLSYTQRM 35 (160)
Q Consensus 24 ~~~~~LS~~qRi 35 (160)
+-..++|++|=+
T Consensus 12 ki~~GlT~RQl~ 23 (93)
T PF12666_consen 12 KIFFGLTLRQLI 23 (93)
T ss_pred hhccCCCHHHHH
Confidence 346799999944
No 45
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=20.89 E-value=1.4e+02 Score=20.62 Aligned_cols=10 Identities=50% Similarity=0.826 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 031391 44 AGLVCMFLSI 53 (160)
Q Consensus 44 ~g~~~~~ls~ 53 (160)
.|.++.+++.
T Consensus 78 ~~~ll~l~~i 87 (92)
T PF13038_consen 78 IGLLLILLSI 87 (92)
T ss_pred HHHHHHHHHH
Confidence 3344434443
No 46
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=20.62 E-value=3.6e+02 Score=22.10 Aligned_cols=26 Identities=12% Similarity=0.309 Sum_probs=18.2
Q ss_pred hhhhhccccCCCCHHHHHHHHHHHHH
Q 031391 18 FLEDESDGICSLSYTQRMYAFAACLL 43 (160)
Q Consensus 18 ~~~~~~~~~~~LS~~qRi~gF~~c~~ 43 (160)
.+.+...+-..++|.-|+.|+++.++
T Consensus 171 ~f~~~~~~n~~~tW~lR~~G~llmf~ 196 (248)
T PF07787_consen 171 MFAKEHSANNTLTWILRFIGWLLMFI 196 (248)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34445556678999999988776554
No 47
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=20.42 E-value=65 Score=21.90 Aligned_cols=76 Identities=17% Similarity=0.308 Sum_probs=43.3
Q ss_pred HHHHHHHHhhHHHhhcHHHHHHhhcccch------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Q 031391 67 TFGNLLAVGSTAFVIGPAQQINMMFDSAR------IYATTVYLVCVVIALICALLIHSKILTILAIICEICALLWYSLSY 140 (160)
Q Consensus 67 TlGsil~l~s~~FL~Gp~~q~k~m~~~~R------~~~t~~yi~sl~~TL~~a~~~~s~~l~ll~~i~Q~~al~wY~lSy 140 (160)
.+|-+....+......|..+++++.+++- .+.....+.+..=+.|.-+. ++. ..++.-++-.+.-.+|.+-|
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~-~d~-~i~~~N~~g~~~~~~~~~~~ 79 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILI-NDW-PIIVPNVFGLVLSIIYLVVY 79 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhc-CCe-eEEeeHHHHHHHHHHHHhhe
Confidence 35677778888889999999999875432 33444444455555555544 333 22333333444444555555
Q ss_pred cccH
Q 031391 141 IPFA 144 (160)
Q Consensus 141 iP~G 144 (160)
.-|.
T Consensus 80 ~~y~ 83 (87)
T PF03083_consen 80 YIYP 83 (87)
T ss_pred EEeC
Confidence 4443
No 48
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=20.18 E-value=6.5e+02 Score=22.70 Aligned_cols=81 Identities=12% Similarity=0.107 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhhHHHhhcHHHHHHhhc--cc-----chHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHH
Q 031391 61 KFAILFTFGNLLAVGSTAFVIGPAQQINMMF--DS-----ARIYATTVYLVCVVIALICALLIHSK-ILTILAIICEICA 132 (160)
Q Consensus 61 kFa~l~TlGsil~l~s~~FL~Gp~~q~k~m~--~~-----~R~~~t~~yi~sl~~TL~~a~~~~s~-~l~ll~~i~Q~~a 132 (160)
..-++=++|.|..+.+..-|..-+...+.-- ++ ++..-..+++++ +|=+.....+.+ .+.. ...+. +.
T Consensus 253 ~pklLG~~GGi~Ll~G~~~l~~l~~R~~~~~~~~~~~~~~D~~fl~lL~lv~--~TGl~l~~~R~t~~m~~-ll~lH-Lg 328 (372)
T TIGR02484 253 LPVILGLVGGVAMLAGAAGLSGLEARADPEPLKTPAMLRSDRFLLGQLALLA--GTGLALLALRDTPAMGL-LLALH-LG 328 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccchHHHHHHHHHHH--HHHHHHHHHcCcHHHHH-HHHHH-HH
Confidence 4567777888877777666655555554322 11 222222222222 222233334444 3344 33444 44
Q ss_pred HHHHHhhccccHH
Q 031391 133 LLWYSLSYIPFAR 145 (160)
Q Consensus 133 l~wY~lSyiP~G~ 145 (160)
.++..+-|.||++
T Consensus 329 ~V~~lF~~lPysK 341 (372)
T TIGR02484 329 AVAGAFLGLPFSK 341 (372)
T ss_pred HHHHHHHHccHHH
Confidence 5677788899985
No 49
>PF07664 FeoB_C: Ferrous iron transport protein B C terminus; InterPro: IPR011640 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions []. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus has been previously erroneously described as being ATP-binding []. Recent work shows that it is similar to eukaryotic G-proteins and that it is a GTPase [].; GO: 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane
Probab=20.12 E-value=1.3e+02 Score=19.10 Aligned_cols=21 Identities=24% Similarity=0.648 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHH
Q 031391 99 TTVYLVCVVIALICALLIHSK 119 (160)
Q Consensus 99 t~~yi~sl~~TL~~a~~~~s~ 119 (160)
-..|+.++++.+..+...++.
T Consensus 3 ~~~y~~~~~~~l~~~~il~~~ 23 (54)
T PF07664_consen 3 FSLYLLGILVALLVGLILKKT 23 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 467889999999888887754
No 50
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=20.07 E-value=3.3e+02 Score=19.21 Aligned_cols=52 Identities=25% Similarity=0.356 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----H---hhhhhHH-HHHHHHHHHHHHhhHHHhhcHH
Q 031391 32 TQRMYAFAACLLAGLVCMFLSII-----V---FVRPIKF-AILFTFGNLLAVGSTAFVIGPA 84 (160)
Q Consensus 32 ~qRi~gF~~c~~~g~~~~~ls~~-----~---l~~p~kF-a~l~TlGsil~l~s~~FL~Gp~ 84 (160)
.||++..++...=|++-. .++- + +..|..+ -+-+..|-+++..+..|+-|+.
T Consensus 1 M~R~iAlliLvIPg~~a~-yGiklMRD~~F~~~~~p~~~lwlqfl~G~~lf~~G~~Fi~GfI 61 (77)
T PF11118_consen 1 MQRFIALLILVIPGILAA-YGIKLMRDTVFGILFSPFPSLWLQFLAGLLLFAIGVGFIAGFI 61 (77)
T ss_pred ChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhHh
Confidence 378887777666555432 2221 1 1245533 4457889999999999999985
Done!