Query 031391
Match_columns 160
No_of_seqs 105 out of 376
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 21:37:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031391.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031391hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bo0_B Preprotein translocase 8.0 4.2E+02 0.014 16.2 3.6 18 78-95 8-25 (65)
2 3arc_L Photosystem II reaction 6.7 4.3E+02 0.015 15.2 4.0 26 25-50 8-33 (37)
3 1pw4_A Glycerol-3-phosphate tr 6.6 8.8E+02 0.03 18.7 7.2 53 57-114 59-111 (451)
4 3j1r_A Archaeal adhesion filam 6.3 3.9E+02 0.013 14.2 2.3 17 120-136 9-25 (26)
5 2kyh_A KVAP, voltage-gated pot 5.5 8.3E+02 0.029 17.3 5.9 14 127-140 56-69 (147)
6 1xrd_A LH-1, light-harvesting 5.3 4.5E+02 0.016 16.2 2.4 9 89-97 6-14 (52)
7 2z16_A Matrix protein 1, M1; A 5.3 4.8E+02 0.016 19.6 3.0 38 4-42 35-73 (165)
8 1qyn_A Protein-export protein 5.2 2.5E+02 0.0086 20.8 1.4 14 141-154 107-120 (153)
9 2xut_A Proton/peptide symporte 4.7 1.3E+03 0.044 18.4 9.5 13 84-96 131-143 (524)
10 3iz6_D 40S ribosomal protein S 4.3 1.8E+02 0.0063 23.8 0.0 17 81-97 3-19 (265)
No 1
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=7.98 E-value=4.2e+02 Score=16.16 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.4
Q ss_pred HHhhcHHHHHHhhcccch
Q 031391 78 AFVIGPAQQINMMFDSAR 95 (160)
Q Consensus 78 ~FL~Gp~~q~k~m~~~~R 95 (160)
-|+++..+.+|+..-|.|
T Consensus 8 ~f~~~~~~E~kkV~wptr 25 (65)
T 3bo0_B 8 AFAREARTEVRKVIWPTR 25 (65)
T ss_dssp HHHHHHHHHHHHHSCTTT
T ss_pred HHHHHHHHHHhheeccCC
Confidence 578888899999988888
No 2
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=6.73 E-value=4.3e+02 Score=15.16 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=20.2
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHH
Q 031391 25 GICSLSYTQRMYAFAACLLAGLVCMF 50 (160)
Q Consensus 25 ~~~~LS~~qRi~gF~~c~~~g~~~~~ 50 (160)
+--+|+++.-.+|-+..++.+++++-
T Consensus 8 q~VELNRTSLy~GLLlifvlavlFss 33 (37)
T 3arc_L 8 QPVELNRTSLYLGLLLILVLALLFSS 33 (37)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceechhhHHHHHHHHHHHHHHhhh
Confidence 33489999988888888888887753
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=6.57 E-value=8.8e+02 Score=18.68 Aligned_cols=53 Identities=8% Similarity=0.082 Sum_probs=26.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhHHHhhcHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 031391 57 VRPIKFAILFTFGNLLAVGSTAFVIGPAQQINMMFDSARIYATTVYLVCVVIALICAL 114 (160)
Q Consensus 57 ~~p~kFa~l~TlGsil~l~s~~FL~Gp~~q~k~m~~~~R~~~t~~yi~sl~~TL~~a~ 114 (160)
.++...++..++..+....+ ..+.|+.. .-+.++| ...+..+...+.++..++
T Consensus 59 ~s~~~~g~~~~~~~~~~~~~-~~~~G~l~---dr~g~r~-~l~~~~~~~~~~~~~~~~ 111 (451)
T 1pw4_A 59 FSRGDLGFALSGISIAYGFS-KFIMGSVS---DRSNPRV-FLPAGLILAAAVMLFMGF 111 (451)
T ss_dssp TCSSCHHHHHHHHHHHHHHH-HHHHHHHH---HHSCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHHHH-HHhHHHHH---HhcCchH-HHHHHHHHHHHHHHHHHh
Confidence 35567777777666655433 33445432 2334444 344444444555555555
No 4
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=6.30 E-value=3.9e+02 Score=14.22 Aligned_cols=17 Identities=18% Similarity=0.573 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031391 120 ILTILAIICEICALLWY 136 (160)
Q Consensus 120 ~l~ll~~i~Q~~al~wY 136 (160)
++.++.+..-++.++|.
T Consensus 9 lLIviav~aaVllylW~ 25 (26)
T 3j1r_A 9 LLILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555555556666664
No 5
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=5.55 E-value=8.3e+02 Score=17.30 Aligned_cols=14 Identities=7% Similarity=0.301 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhhc
Q 031391 127 ICEICALLWYSLSY 140 (160)
Q Consensus 127 i~Q~~al~wY~lSy 140 (160)
.++..+.+|+++.|
T Consensus 56 ~id~~~~~iF~~Ey 69 (147)
T 2kyh_A 56 LVDLILVIILWADY 69 (147)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555554
No 6
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=5.32 E-value=4.5e+02 Score=16.19 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=5.8
Q ss_pred hhcccchHH
Q 031391 89 MMFDSARIY 97 (160)
Q Consensus 89 ~m~~~~R~~ 97 (160)
.++||.|..
T Consensus 6 l~fDPrr~L 14 (52)
T 1xrd_A 6 QLFDPRQAL 14 (52)
T ss_dssp GTSSHHHHH
T ss_pred EEEchhHHH
Confidence 357888843
No 7
>2z16_A Matrix protein 1, M1; AIV-7M1, H5N1, structural genomics; 2.02A {Influenza a virus} PDB: 3md2_A 1ea3_A 1aa7_A
Probab=5.30 E-value=4.8e+02 Score=19.58 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=18.7
Q ss_pred hhhhhcCChhhhhhhhhhhccccCCCCHHHH-HHHHHHHH
Q 031391 4 LKQLVAGDEEREESFLEDESDGICSLSYTQR-MYAFAACL 42 (160)
Q Consensus 4 l~~~~~~~~~~~e~~~~~~~~~~~~LS~~qR-i~gF~~c~ 42 (160)
+...+++.+.|=| -++|=...-|-||.-|. ++||.+|+
T Consensus 35 l~~~f~gkntDLe-almEWlk~r~~ls~l~k~ilg~~~~~ 73 (165)
T 2z16_A 35 LEDVFAGKNTDLE-ALMEWLKTRPILSPLTKGILGFVFTL 73 (165)
T ss_dssp HHHHHHTSCCCHH-HHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHcccccCHH-HHHHHHhcCcccchHHhhhhheEEEE
Confidence 4444544433332 23333333467787665 45566554
No 8
>1qyn_A Protein-export protein SECB; tetramer, greek KEY beta sheet, chaperone; 2.35A {Escherichia coli} SCOP: d.33.1.1
Probab=5.17 E-value=2.5e+02 Score=20.79 Aligned_cols=14 Identities=36% Similarity=0.793 Sum_probs=10.5
Q ss_pred cccHHHHHHHHHHh
Q 031391 141 IPFARRMISELMIR 154 (160)
Q Consensus 141 iP~G~~~~~~~~~~ 154 (160)
+||.|+.+..+.++
T Consensus 107 FPYaRe~Isdlt~~ 120 (153)
T 1qyn_A 107 FPYARECITSMVSR 120 (153)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc
Confidence 58888888877654
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=4.68 E-value=1.3e+03 Score=18.41 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=7.8
Q ss_pred HHHHHhhcccchH
Q 031391 84 AQQINMMFDSARI 96 (160)
Q Consensus 84 ~~q~k~m~~~~R~ 96 (160)
.+.....++++++
T Consensus 131 ~~~~~~~~~~~~r 143 (524)
T 2xut_A 131 SSFMGDQFDQSNK 143 (524)
T ss_dssp HHHHHHTCSTTTT
T ss_pred HHHHHHHcCccch
Confidence 3556667766554
No 10
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=4.26 E-value=1.8e+02 Score=23.75 Aligned_cols=17 Identities=6% Similarity=0.083 Sum_probs=0.0
Q ss_pred hcHHHHHHhhcccchHH
Q 031391 81 IGPAQQINMMFDSARIY 97 (160)
Q Consensus 81 ~Gp~~q~k~m~~~~R~~ 97 (160)
+||++++|++-.|+-|+
T Consensus 3 rg~kkHlKRl~AP~~W~ 19 (265)
T 3iz6_D 3 RGLKKHLKRLNAPKHWM 19 (265)
T ss_dssp -----------------
T ss_pred CCcccccccccCCcccc
Confidence 49999999999887654
Done!