Query 031391
Match_columns 160
No_of_seqs 105 out of 376
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 21:38:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031391.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031391hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 11.3 1.2E+02 0.0088 16.1 3.9 25 26-50 9-33 (37)
2 d1xrda1 f.3.1.1 (A:1-52) Light 11.3 1.2E+02 0.0088 17.4 3.3 22 89-110 6-28 (52)
3 d1q90a3 f.23.23.1 (A:248-292) 11.2 1.4E+02 0.0099 16.6 3.5 21 92-112 1-21 (45)
4 d1aa7a_ a.95.1.1 (A:) Influenz 7.8 1.6E+02 0.011 20.2 3.3 39 3-42 27-66 (158)
5 d1vf5c3 f.23.23.1 (C:250-286) 7.4 1.8E+02 0.013 15.4 3.2 19 92-110 2-20 (37)
6 d2fyuk1 f.23.15.1 (K:1-53) Sub 5.3 3E+02 0.022 15.6 4.9 17 127-143 26-47 (53)
7 d1qgta_ a.62.1.1 (A:) Hepatiti 4.7 1.7E+02 0.012 19.7 1.8 26 128-153 95-120 (142)
8 d1nekc_ f.21.2.2 (C:) Succinat 3.8 5E+02 0.036 16.2 10.3 21 28-48 25-45 (129)
9 d1v54j_ f.23.4.1 (J:) Mitochon 3.6 4.3E+02 0.031 15.1 3.1 20 95-114 29-48 (58)
10 d1jb0i_ f.23.17.1 (I:) Subunit 3.2 70 0.0051 17.2 -1.1 8 136-143 5-12 (38)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.30 E-value=1.2e+02 Score=16.05 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=20.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHH
Q 031391 26 ICSLSYTQRMYAFAACLLAGLVCMF 50 (160)
Q Consensus 26 ~~~LS~~qRi~gF~~c~~~g~~~~~ 50 (160)
--.|.++.-.+|-+..+++|++++-
T Consensus 9 ~veLNrtsLy~GlLlifvl~vLFss 33 (37)
T d2axtl1 9 PVELNRTSLYLGLLLILVLALLFSS 33 (37)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHHH
Confidence 3489999888888888888887753
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=11.29 E-value=1.2e+02 Score=17.36 Aligned_cols=22 Identities=14% Similarity=0.483 Sum_probs=13.0
Q ss_pred hhcccch-HHHHHHHHHHHHHHH
Q 031391 89 MMFDSAR-IYATTVYLVCVVIAL 110 (160)
Q Consensus 89 ~m~~~~R-~~~t~~yi~sl~~TL 110 (160)
.++||.| +++..+|+..+.+++
T Consensus 6 ~~fDPRr~lva~~~fL~~LAl~I 28 (52)
T d1xrda1 6 QLFDPRQALVGLATFLFVLALLI 28 (52)
T ss_dssp GTSSHHHHHHHHHHHHHHHHHHH
T ss_pred eEecHHHHHHHHHHHHHHHHHHH
Confidence 4688888 445555555554443
No 3
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=11.19 E-value=1.4e+02 Score=16.60 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=16.0
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 031391 92 DSARIYATTVYLVCVVIALIC 112 (160)
Q Consensus 92 ~~~R~~~t~~yi~sl~~TL~~ 112 (160)
+|.|+..-++|+.+++++=+.
T Consensus 1 nP~Rv~gll~F~~~v~laQi~ 21 (45)
T d1q90a3 1 NPARIQGLLVFFSFVLLTQVL 21 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888877443
No 4
>d1aa7a_ a.95.1.1 (A:) Influenza virus matrix protein M1 {Influenza A virus [TaxId: 11320]}
Probab=7.76 E-value=1.6e+02 Score=20.20 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=20.5
Q ss_pred hhhhhhcCChhhhhhhhhhhccccCCCCHHHH-HHHHHHHH
Q 031391 3 KLKQLVAGDEEREESFLEDESDGICSLSYTQR-MYAFAACL 42 (160)
Q Consensus 3 ~l~~~~~~~~~~~e~~~~~~~~~~~~LS~~qR-i~gF~~c~ 42 (160)
++..++++.+.|-| -++|=...-|-||.-|. ++||.+|+
T Consensus 27 ~Le~vFaGKntDL~-~lmEWlKtr~~Ls~ltK~ilG~~~~~ 66 (158)
T d1aa7a_ 27 RLEDVFAGKNTDLE-VLMEWLKTRPILSPLTKGILGFVFTL 66 (158)
T ss_dssp HHHHHHTTCCCCHH-HHHHHHHTCSSSCHHHHHHHHHHHHH
T ss_pred hHHHHhcCcccCHH-HHHHHHhcCcccchHHhhhhheEEEE
Confidence 44555655444433 23343344567887665 45565554
No 5
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.44 E-value=1.8e+02 Score=15.38 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=14.5
Q ss_pred ccchHHHHHHHHHHHHHHH
Q 031391 92 DSARIYATTVYLVCVVIAL 110 (160)
Q Consensus 92 ~~~R~~~t~~yi~sl~~TL 110 (160)
+|.|+..-++|+.++.++=
T Consensus 2 ~p~Rv~gl~~F~~~v~laQ 20 (37)
T d1vf5c3 2 DPNRVKWMIAFICLVMLAQ 20 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 5778888888888777763
No 6
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.29 E-value=3e+02 Score=15.60 Aligned_cols=17 Identities=24% Similarity=0.819 Sum_probs=9.7
Q ss_pred HHHHHHHHHHH-----hhcccc
Q 031391 127 ICEICALLWYS-----LSYIPF 143 (160)
Q Consensus 127 i~Q~~al~wY~-----lSyiP~ 143 (160)
.+--++++||+ +.|+||
T Consensus 26 ~a~gl~lvy~TDWklil~yvPy 47 (53)
T d2fyuk1 26 AVGAVGLVWATDWRLILDWVPY 47 (53)
T ss_dssp HHHHHHHHHHHTCHHHHTSSSS
T ss_pred hhhheeeeeeehHHHHHhhhhh
Confidence 33445566663 677775
No 7
>d1qgta_ a.62.1.1 (A:) Hepatitis B viral capsid (hbcag) {Hepatitis B virus [TaxId: 10407]}
Probab=4.71 E-value=1.7e+02 Score=19.71 Aligned_cols=26 Identities=31% Similarity=0.747 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHH
Q 031391 128 CEICALLWYSLSYIPFARRMISELMI 153 (160)
Q Consensus 128 ~Q~~al~wY~lSyiP~G~~~~~~~~~ 153 (160)
.++=-++|+-+|-+-|||+.+....-
T Consensus 95 lK~rqllwFHiscltFGreTv~EyLv 120 (142)
T d1qgta_ 95 LKIRQLLWFHISCLTFGRETVLEYLV 120 (142)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35556789999999999998876543
No 8
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=3.81 E-value=5e+02 Score=16.18 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 031391 28 SLSYTQRMYAFAACLLAGLVC 48 (160)
Q Consensus 28 ~LS~~qRi~gF~~c~~~g~~~ 48 (160)
-+|-..|+-|.+..+++..+.
T Consensus 25 ~~SI~HRisGv~l~~~~~~~~ 45 (129)
T d1nekc_ 25 IASILHRVSGVITFVAVGILL 45 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457789999987766655543
No 9
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.62 E-value=4.3e+02 Score=15.07 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 031391 95 RIYATTVYLVCVVIALICAL 114 (160)
Q Consensus 95 R~~~t~~yi~sl~~TL~~a~ 114 (160)
|+.+-+....+++.|.|+..
T Consensus 29 ~~LYr~Tm~L~~~G~~~s~~ 48 (58)
T d1v54j_ 29 NILYRVTMTLCLGGTLYSLY 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555543
No 10
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=3.17 E-value=70 Score=17.21 Aligned_cols=8 Identities=38% Similarity=1.207 Sum_probs=5.4
Q ss_pred HHhhcccc
Q 031391 136 YSLSYIPF 143 (160)
Q Consensus 136 Y~lSyiP~ 143 (160)
|..||+|.
T Consensus 5 yAAsyLPw 12 (38)
T d1jb0i_ 5 YAASFLPW 12 (38)
T ss_dssp STTTTHHH
T ss_pred hHHHhcch
Confidence 56677774
Done!