Query 031392
Match_columns 160
No_of_seqs 147 out of 1301
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 13:27:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 8.9E-40 1.9E-44 243.7 4.9 157 1-157 1-184 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 1.3E-36 2.9E-41 194.3 3.6 75 2-76 1-75 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 1.7E-33 3.6E-38 182.6 4.0 78 2-79 1-79 (83)
4 smart00432 MADS MADS domain. 100.0 1.3E-32 2.8E-37 166.4 3.6 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 6.9E-32 1.5E-36 163.3 3.2 59 2-60 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 100.0 3.5E-30 7.5E-35 151.0 -1.3 51 9-59 1-51 (51)
7 KOG0015 Regulator of arginine 99.9 6.4E-23 1.4E-27 157.1 2.2 75 2-76 63-146 (338)
8 PF01486 K-box: K-box region; 99.7 1.1E-16 2.4E-21 107.4 9.2 77 84-160 11-87 (100)
9 COG5068 ARG80 Regulator of arg 99.6 7E-16 1.5E-20 123.4 2.7 68 1-68 81-148 (412)
10 PRK04098 sec-independent trans 92.1 0.12 2.5E-06 37.3 2.2 85 42-136 14-98 (158)
11 PF10584 Proteasome_A_N: Prote 90.8 0.075 1.6E-06 25.7 0.1 14 43-56 3-16 (23)
12 PF06698 DUF1192: Protein of u 85.8 2.3 4.9E-05 25.5 4.2 35 110-144 12-46 (59)
13 PF07106 TBPIP: Tat binding pr 81.6 15 0.00032 26.5 8.0 54 89-143 113-166 (169)
14 PF09151 DUF1936: Domain of un 78.8 1.5 3.3E-05 22.6 1.4 27 34-60 2-30 (36)
15 PF05812 Herpes_BLRF2: Herpesv 77.6 20 0.00044 24.6 8.0 59 86-144 4-66 (118)
16 PHA03162 hypothetical protein; 73.4 28 0.00062 24.3 7.9 61 84-144 12-76 (135)
17 PHA03155 hypothetical protein; 72.5 27 0.00059 23.7 7.9 60 85-144 8-67 (115)
18 KOG3684 Ca2+-activated K+ chan 72.4 51 0.0011 28.1 9.3 55 101-159 405-459 (489)
19 PHA02592 52 DNA topisomerase I 70.5 18 0.0004 30.5 6.6 28 43-72 299-326 (439)
20 PF08317 Spc7: Spc7 kinetochor 68.5 26 0.00057 28.1 6.9 33 114-146 201-233 (325)
21 PF09941 DUF2173: Uncharacteri 63.4 8.6 0.00019 26.0 2.7 27 32-59 3-29 (108)
22 smart00787 Spc7 Spc7 kinetocho 60.0 54 0.0012 26.4 7.2 32 114-145 196-227 (312)
23 PLN03230 acetyl-coenzyme A car 59.8 55 0.0012 27.6 7.3 76 53-140 38-123 (431)
24 PF10211 Ax_dynein_light: Axon 57.7 50 0.0011 24.5 6.2 35 123-157 145-179 (189)
25 KOG0184 20S proteasome, regula 57.7 5.7 0.00012 30.3 1.2 24 36-59 3-28 (254)
26 COG0139 HisI Phosphoribosyl-AM 57.6 4.5 9.7E-05 27.4 0.6 37 17-53 50-95 (111)
27 cd00187 TOP4c DNA Topoisomeras 57.3 1.2E+02 0.0026 25.8 9.0 60 7-72 257-327 (445)
28 KOG0250 DNA repair protein RAD 56.5 1.2E+02 0.0026 28.6 9.4 63 44-110 621-686 (1074)
29 PRK10803 tol-pal system protei 56.5 7.4 0.00016 30.4 1.7 70 35-105 12-81 (263)
30 PRK04654 sec-independent trans 56.5 3.1 6.8E-05 31.4 -0.3 34 34-71 8-41 (214)
31 PRK13824 replication initiatio 56.2 29 0.00063 29.0 5.2 67 34-110 103-181 (404)
32 PF10504 DUF2452: Protein of u 55.9 59 0.0013 23.6 6.0 38 120-157 28-68 (159)
33 KOG0183 20S proteasome, regula 55.8 6.2 0.00013 30.0 1.1 16 41-56 4-19 (249)
34 PF14009 DUF4228: Domain of un 55.1 11 0.00023 26.9 2.3 34 39-72 12-46 (181)
35 PF07956 DUF1690: Protein of U 55.0 73 0.0016 22.5 8.2 85 47-136 1-92 (142)
36 COG4831 Roadblock/LC7 domain [ 54.9 14 0.0003 24.4 2.5 30 30-60 3-32 (109)
37 PF10491 Nrf1_DNA-bind: NLS-bi 54.0 11 0.00023 28.5 2.1 48 25-72 34-88 (214)
38 PF07106 TBPIP: Tat binding pr 52.8 83 0.0018 22.5 8.4 57 86-146 80-136 (169)
39 COG4888 Uncharacterized Zn rib 51.7 12 0.00026 24.9 1.8 57 1-60 1-61 (104)
40 PF14282 FlxA: FlxA-like prote 50.8 72 0.0016 21.2 9.2 57 94-152 21-77 (106)
41 TIGR01478 STEVOR variant surfa 50.4 58 0.0013 25.9 5.7 44 7-71 25-69 (295)
42 COG3883 Uncharacterized protei 50.0 1.3E+02 0.0027 23.8 8.5 34 121-155 79-112 (265)
43 KOG4311 Histidinol dehydrogena 49.4 74 0.0016 25.3 6.1 60 15-74 180-260 (359)
44 PF06008 Laminin_I: Laminin Do 49.2 1.1E+02 0.0024 23.6 7.3 30 113-142 114-143 (264)
45 TIGR02231 conserved hypothetic 48.9 1.7E+02 0.0037 25.0 9.5 38 118-156 123-160 (525)
46 PRK00182 tatB sec-independent 48.8 7.4 0.00016 28.2 0.5 36 34-73 9-44 (160)
47 cd01365 KISc_KIF1A_KIF1B Kines 48.5 15 0.00034 29.7 2.5 26 36-61 83-111 (356)
48 PF03428 RP-C: Replication pro 48.3 61 0.0013 23.8 5.3 62 41-110 96-169 (177)
49 PLN03229 acetyl-coenzyme A car 47.3 83 0.0018 28.5 6.8 90 43-140 50-144 (762)
50 COG4052 Uncharacterized protei 46.4 17 0.00037 28.1 2.2 44 28-73 54-105 (310)
51 TIGR02976 phageshock_pspB phag 46.3 52 0.0011 20.7 4.1 43 65-107 22-64 (75)
52 PF14263 DUF4354: Domain of un 46.3 6.1 0.00013 27.4 -0.2 41 11-56 41-81 (124)
53 PF10337 DUF2422: Protein of u 46.1 1E+02 0.0023 25.9 7.1 50 87-136 257-307 (459)
54 KOG4252 GTP-binding protein [S 45.3 1.2E+02 0.0026 22.8 6.4 29 39-73 91-119 (246)
55 PF01502 PRA-CH: Phosphoribosy 45.1 8.3 0.00018 24.3 0.3 37 17-53 18-63 (75)
56 PF06005 DUF904: Protein of un 44.7 76 0.0016 19.7 4.8 22 119-140 1-22 (72)
57 PF09177 Syntaxin-6_N: Syntaxi 44.6 85 0.0019 20.3 5.8 77 61-139 16-94 (97)
58 PF07438 DUF1514: Protein of u 44.5 40 0.00087 20.5 3.1 42 97-138 23-64 (66)
59 KOG0933 Structural maintenance 43.8 2.9E+02 0.0064 26.2 10.4 25 119-143 738-762 (1174)
60 PF06667 PspB: Phage shock pro 43.6 73 0.0016 20.0 4.4 43 65-107 22-64 (75)
61 PHA01750 hypothetical protein 42.9 78 0.0017 19.4 5.0 13 146-158 61-73 (75)
62 PRK14625 hypothetical protein; 42.5 1.1E+02 0.0023 20.7 6.9 66 89-154 6-94 (109)
63 COG5000 NtrY Signal transducti 42.1 16 0.00034 32.3 1.6 22 36-57 374-395 (712)
64 KOG4637 Adaptor for phosphoino 41.9 19 0.00041 29.8 1.9 40 33-74 367-413 (464)
65 cd02980 TRX_Fd_family Thioredo 41.1 23 0.00049 21.5 1.9 29 39-68 47-76 (77)
66 cd00106 KISc Kinesin motor dom 41.0 24 0.00051 28.1 2.4 25 36-60 73-100 (328)
67 cd01371 KISc_KIF3 Kinesin moto 39.5 26 0.00056 28.2 2.4 25 36-60 76-103 (333)
68 PRK03100 sec-independent trans 39.2 14 0.0003 26.0 0.8 34 34-71 9-42 (136)
69 COG4917 EutP Ethanolamine util 39.0 20 0.00043 25.3 1.4 24 35-58 59-82 (148)
70 cd01363 Motor_domain Myosin an 39.0 22 0.00047 26.0 1.8 33 28-60 8-45 (186)
71 cd01368 KISc_KIF23_like Kinesi 37.7 28 0.00061 28.2 2.4 25 36-60 83-110 (345)
72 PF00225 Kinesin: Kinesin moto 37.6 19 0.00042 28.7 1.4 24 36-59 69-95 (335)
73 PRK14627 hypothetical protein; 37.4 1.2E+02 0.0026 20.0 6.8 36 118-153 57-92 (100)
74 TIGR03545 conserved hypothetic 37.2 1.5E+02 0.0033 25.9 6.9 50 89-140 179-230 (555)
75 PF07676 PD40: WD40-like Beta 37.0 26 0.00057 18.2 1.5 19 42-60 10-28 (39)
76 PLN02372 violaxanthin de-epoxi 36.2 2.7E+02 0.0058 23.6 9.4 14 43-56 316-329 (455)
77 cd01369 KISc_KHC_KIF5 Kinesin 36.0 28 0.00061 27.7 2.1 26 36-61 71-99 (325)
78 cd03063 TRX_Fd_FDH_beta TRX-li 35.8 37 0.00081 22.1 2.3 36 38-73 44-81 (92)
79 PF10623 PilI: Plasmid conjuga 35.2 37 0.00081 21.5 2.1 30 42-71 8-40 (83)
80 PF11232 Med25: Mediator compl 34.8 35 0.00075 24.6 2.2 23 37-59 109-132 (152)
81 PF01166 TSC22: TSC-22/dip/bun 34.7 91 0.002 18.6 3.6 28 84-111 13-40 (59)
82 cd01370 KISc_KIP3_like Kinesin 34.7 33 0.00071 27.7 2.3 25 36-60 82-109 (338)
83 TIGR01916 F420_cofE F420-0:gam 34.6 29 0.00062 27.0 1.9 28 33-60 133-160 (243)
84 PF13252 DUF4043: Protein of u 34.3 21 0.00045 29.1 1.1 27 32-58 271-299 (341)
85 KOG3718 Carnitine O-acyltransf 34.2 90 0.0019 26.9 4.8 29 48-76 14-42 (609)
86 PRK01470 tatA twin arginine tr 34.2 8.3 0.00018 22.4 -0.9 30 43-74 14-43 (51)
87 PRK09822 lipopolysaccharide co 33.5 19 0.00041 27.8 0.7 40 20-60 119-161 (269)
88 cd01376 KISc_KID_like Kinesin 33.2 38 0.00083 27.0 2.5 25 36-60 75-102 (319)
89 TIGR02338 gimC_beta prefoldin, 33.2 1.5E+02 0.0032 19.7 8.8 14 59-72 2-15 (110)
90 KOG4797 Transcriptional regula 33.1 1.6E+02 0.0034 20.0 5.2 41 88-132 70-110 (123)
91 PRK10884 SH3 domain-containing 33.0 2.1E+02 0.0046 21.5 8.7 19 87-105 95-113 (206)
92 cd01366 KISc_C_terminal Kinesi 32.8 37 0.00081 27.1 2.4 24 36-59 72-98 (329)
93 PF14257 DUF4349: Domain of un 32.5 2.3E+02 0.005 21.8 7.2 33 120-157 160-192 (262)
94 cd03064 TRX_Fd_NuoE TRX-like [ 32.3 33 0.00071 21.2 1.6 28 39-69 52-80 (80)
95 PF04521 Viral_P18: ssRNA posi 32.3 1.4E+02 0.0029 20.6 4.6 22 18-39 4-25 (120)
96 PF11944 DUF3461: Protein of u 32.2 69 0.0015 22.1 3.2 24 121-144 101-124 (125)
97 PF06937 EURL: EURL protein; 32.1 1E+02 0.0022 24.4 4.5 38 110-147 210-247 (285)
98 cd01367 KISc_KIF2_like Kinesin 32.1 37 0.0008 27.2 2.2 25 36-60 79-106 (322)
99 PF06717 DUF1202: Protein of u 32.0 84 0.0018 25.0 4.0 34 86-119 153-186 (308)
100 smart00129 KISc Kinesin motor, 32.0 43 0.00092 26.8 2.6 25 36-60 74-101 (335)
101 COG0749 PolA DNA polymerase I 31.8 1.3E+02 0.0028 26.6 5.5 41 87-127 213-253 (593)
102 KOG4603 TBP-1 interacting prot 31.8 2.1E+02 0.0046 21.1 8.8 62 89-152 120-181 (201)
103 PRK14622 hypothetical protein; 31.0 1.6E+02 0.0035 19.5 6.8 37 118-154 57-93 (103)
104 PF13540 RCC1_2: Regulator of 31.0 21 0.00045 17.9 0.4 24 36-60 3-26 (30)
105 PRK14626 hypothetical protein; 30.9 1.7E+02 0.0037 19.7 7.1 66 88-153 8-96 (110)
106 PF12537 DUF3735: Protein of u 30.6 1.1E+02 0.0025 18.7 3.8 25 121-145 47-71 (72)
107 COG5068 ARG80 Regulator of arg 30.4 31 0.00067 28.8 1.5 47 8-60 18-64 (412)
108 cd01374 KISc_CENP_E Kinesin mo 30.3 45 0.00097 26.6 2.4 25 36-60 68-95 (321)
109 PF03233 Cauli_AT: Aphid trans 30.1 2.2E+02 0.0047 20.7 7.4 27 119-145 135-161 (163)
110 PF09403 FadA: Adhesion protei 29.9 1.9E+02 0.0042 20.0 6.8 21 122-142 89-109 (126)
111 PF09388 SpoOE-like: Spo0E lik 29.5 1.1E+02 0.0023 16.9 4.3 38 99-138 4-41 (45)
112 PF11629 Mst1_SARAH: C termina 29.2 1.1E+02 0.0023 17.6 3.1 17 116-132 5-21 (49)
113 PRK00708 sec-independent trans 29.2 63 0.0014 24.5 2.9 35 34-72 8-42 (209)
114 PTZ00370 STEVOR; Provisional 28.5 2.1E+02 0.0045 22.9 5.7 42 8-71 26-68 (296)
115 PRK09458 pspB phage shock prot 28.3 1.6E+02 0.0034 18.5 4.1 24 84-107 41-64 (75)
116 PF12165 DUF3594: Domain of un 27.8 34 0.00074 23.8 1.1 33 20-52 9-47 (137)
117 cd01668 TGS_RelA_SpoT TGS_RelA 27.6 58 0.0013 18.4 2.1 24 46-69 2-26 (60)
118 cd04788 HTH_NolA-AlbR Helix-Tu 27.6 1.7E+02 0.0036 18.8 4.4 11 119-129 58-68 (96)
119 PRK06851 hypothetical protein; 27.6 1.6E+02 0.0035 24.3 5.2 28 24-51 42-69 (367)
120 PLN03194 putative disease resi 27.4 35 0.00075 25.4 1.2 30 39-68 79-108 (187)
121 PRK14624 hypothetical protein; 27.4 2.1E+02 0.0045 19.5 7.0 67 87-153 8-97 (115)
122 COG1438 ArgR Arginine represso 27.2 34 0.00074 24.5 1.1 19 33-51 118-136 (150)
123 PF04417 DUF501: Protein of un 27.1 1.8E+02 0.0038 20.5 4.7 34 39-72 7-46 (139)
124 PF06020 Roughex: Drosophila r 27.1 29 0.00063 27.6 0.8 16 36-51 183-198 (334)
125 PRK11239 hypothetical protein; 26.9 1.1E+02 0.0025 23.2 3.9 55 14-72 74-143 (215)
126 PF05600 DUF773: Protein of un 26.9 4.2E+02 0.0091 22.9 8.6 39 116-155 170-209 (507)
127 PF04945 YHS: YHS domain; Int 26.8 34 0.00074 19.0 0.9 24 39-62 6-32 (47)
128 PF08432 Vfa1: AAA-ATPase Vps4 26.7 90 0.0019 22.9 3.3 21 87-107 64-84 (182)
129 KOG4603 TBP-1 interacting prot 26.6 2.7E+02 0.0058 20.6 7.5 59 87-145 81-142 (201)
130 COG5179 TAF1 Transcription ini 26.5 58 0.0013 29.0 2.5 48 26-74 446-493 (968)
131 PF10112 Halogen_Hydrol: 5-bro 26.4 67 0.0014 23.7 2.6 53 23-75 94-151 (199)
132 PRK13293 F420-0--gamma-glutamy 26.1 49 0.0011 25.7 1.9 28 33-60 134-161 (245)
133 PF13082 DUF3931: Protein of u 26.0 26 0.00056 20.4 0.2 36 5-40 7-44 (66)
134 PRK14860 tatA twin arginine tr 25.7 13 0.00028 22.6 -1.1 38 34-75 8-45 (64)
135 PRK15422 septal ring assembly 25.6 1.8E+02 0.004 18.4 5.2 22 121-142 27-48 (79)
136 TIGR03007 pepcterm_ChnLen poly 25.6 4.1E+02 0.0089 22.4 10.3 49 62-112 140-188 (498)
137 TIGR00606 rad50 rad50. This fa 25.5 5.7E+02 0.012 24.9 9.1 40 118-157 821-866 (1311)
138 cd08637 DNA_pol_A_pol_I_C Poly 25.5 2.1E+02 0.0046 23.5 5.6 39 88-126 3-41 (377)
139 PF11068 YlqD: YlqD protein; 25.5 2.4E+02 0.0052 19.7 7.3 58 89-147 24-81 (131)
140 KOG3048 Molecular chaperone Pr 25.4 2.6E+02 0.0056 20.0 6.5 33 113-145 7-39 (153)
141 KOG0432 Valyl-tRNA synthetase 25.3 3.2E+02 0.0069 25.6 6.9 23 86-108 931-953 (995)
142 COG3074 Uncharacterized protei 25.3 1.8E+02 0.0038 18.1 5.2 9 121-129 27-35 (79)
143 PF05991 NYN_YacP: YacP-like N 25.3 2.6E+02 0.0057 20.0 7.0 54 21-75 24-92 (166)
144 TIGR01001 metA homoserine O-su 25.3 54 0.0012 26.3 2.0 45 28-72 200-249 (300)
145 PF14193 DUF4315: Domain of un 25.2 1.6E+02 0.0036 18.8 3.9 15 118-132 47-61 (83)
146 cd01375 KISc_KIF9_like Kinesin 25.2 42 0.0009 27.0 1.4 24 36-59 75-101 (334)
147 cd01373 KISc_KLP2_like Kinesin 25.0 48 0.001 26.7 1.7 24 36-59 69-95 (337)
148 PRK09555 feoA ferrous iron tra 24.7 78 0.0017 19.6 2.3 33 26-58 20-52 (74)
149 PRK10132 hypothetical protein; 24.5 2.3E+02 0.0049 19.1 5.4 51 85-143 12-62 (108)
150 PF04697 Pinin_SDK_N: pinin/SD 24.3 1.5E+02 0.0032 20.8 3.7 35 87-121 5-39 (134)
151 cd08888 SRPBCC_PITPNA-B_like L 24.2 1.1E+02 0.0023 24.1 3.4 26 114-139 232-257 (258)
152 cd04768 HTH_BmrR-like Helix-Tu 24.0 2.1E+02 0.0044 18.4 4.8 16 32-47 3-18 (96)
153 PF00804 Syntaxin: Syntaxin; 23.9 1.9E+02 0.0042 18.0 8.2 57 87-143 9-66 (103)
154 PF01920 Prefoldin_2: Prefoldi 23.7 2E+02 0.0043 18.4 4.3 21 33-56 36-56 (106)
155 PLN03128 DNA topoisomerase 2; 23.7 5.6E+02 0.012 24.7 8.5 27 44-72 961-987 (1135)
156 smart00782 PhnA_Zn_Ribbon PhnA 23.7 42 0.0009 19.1 0.8 22 28-49 2-23 (47)
157 PRK10265 chaperone-modulator p 23.6 2.2E+02 0.0048 18.6 4.8 78 32-111 10-97 (101)
158 cd01106 HTH_TipAL-Mta Helix-Tu 23.5 2.2E+02 0.0047 18.4 4.7 38 118-156 57-95 (103)
159 KOG0182 20S proteasome, regula 23.5 46 0.001 25.4 1.2 19 38-56 6-24 (246)
160 PF04977 DivIC: Septum formati 23.2 1.7E+02 0.0036 17.6 3.7 24 87-110 26-49 (80)
161 PF14723 SSFA2_C: Sperm-specif 23.2 98 0.0021 22.8 2.8 18 123-140 160-177 (179)
162 COG3880 Modulator of heat shoc 23.1 3.1E+02 0.0068 20.1 5.4 35 123-157 137-171 (176)
163 PF11460 DUF3007: Protein of u 22.9 54 0.0012 22.0 1.4 18 115-132 86-103 (104)
164 PTZ00108 DNA topoisomerase 2-l 22.7 7.2E+02 0.015 24.7 9.0 110 45-158 963-1142(1388)
165 COG4575 ElaB Uncharacterized c 22.7 2.5E+02 0.0054 18.8 6.7 29 117-145 32-60 (104)
166 KOG3335 Predicted coiled-coil 22.2 1.1E+02 0.0025 22.5 3.0 11 45-55 76-86 (181)
167 PHA02773 hypothetical protein; 22.2 58 0.0013 21.3 1.3 33 28-60 28-61 (112)
168 PF08946 Osmo_CC: Osmosensory 22.2 1.2E+02 0.0026 17.1 2.4 8 149-156 27-34 (46)
169 cd04790 HTH_Cfa-like_unk Helix 22.1 2.2E+02 0.0048 20.6 4.6 16 32-47 4-19 (172)
170 cd03750 proteasome_alpha_type_ 22.0 35 0.00076 25.7 0.4 16 44-59 4-21 (227)
171 COG3411 Ferredoxin [Energy pro 21.9 70 0.0015 19.5 1.6 28 44-71 18-46 (64)
172 PF04508 Pox_A_type_inc: Viral 21.8 1.1E+02 0.0025 14.6 2.2 14 94-107 3-16 (23)
173 KOG4302 Microtubule-associated 21.7 1.5E+02 0.0033 26.6 4.2 33 115-147 153-185 (660)
174 PF02145 Rap_GAP: Rap/ran-GAP; 21.6 55 0.0012 24.1 1.4 19 40-58 80-98 (188)
175 PF00383 dCMP_cyt_deam_1: Cyti 21.3 61 0.0013 20.7 1.4 29 28-56 7-39 (102)
176 PF08657 DASH_Spc34: DASH comp 21.3 3E+02 0.0064 21.6 5.4 19 90-108 192-210 (259)
177 PF03250 Tropomodulin: Tropomo 21.2 64 0.0014 23.0 1.5 18 116-133 21-38 (147)
178 KOG4316 Uncharacterized conser 21.1 44 0.00095 23.9 0.7 43 32-74 42-95 (172)
179 PF09638 Ph1570: Ph1570 protei 21.1 61 0.0013 22.7 1.4 25 47-71 126-150 (152)
180 TIGR02051 MerR Hg(II)-responsi 21.0 2.7E+02 0.006 18.7 4.9 18 128-145 78-95 (124)
181 PF10662 PduV-EutP: Ethanolami 20.9 66 0.0014 22.8 1.6 25 35-59 58-82 (143)
182 PRK00191 tatA twin arginine tr 20.9 19 0.0004 23.2 -1.1 35 34-72 7-41 (84)
183 cd04777 HTH_MerR-like_sg1 Heli 20.9 2.5E+02 0.0055 18.2 5.9 14 33-46 4-17 (107)
184 TIGR01005 eps_transp_fam exopo 20.7 5.2E+02 0.011 23.2 7.5 50 86-135 195-250 (754)
185 PRK00587 hypothetical protein; 20.5 2.7E+02 0.0058 18.4 5.9 36 118-153 56-91 (99)
186 cd04770 HTH_HMRTR Helix-Turn-H 20.4 2.7E+02 0.006 18.5 5.4 18 128-145 81-98 (123)
187 PF13870 DUF4201: Domain of un 20.4 3.4E+02 0.0073 19.5 8.4 57 87-146 8-66 (177)
188 COG3938 Proline racemase [Amin 20.1 84 0.0018 25.4 2.1 24 38-61 72-95 (341)
189 PF11807 DUF3328: Domain of un 20.1 86 0.0019 22.7 2.1 15 36-50 173-187 (217)
190 PRK09039 hypothetical protein; 20.0 4.8E+02 0.01 21.2 8.9 23 86-108 138-160 (343)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=8.9e-40 Score=243.67 Aligned_cols=157 Identities=46% Similarity=0.660 Sum_probs=127.0
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccc--hhhHHHHhhhccccccc
Q 031392 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS--INKTIERYQKKTKDIGI 78 (160)
Q Consensus 1 M~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~--~~~il~RY~~~~~~~~~ 78 (160)
|||+||+|++|+|+++|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|+ +..|+++|...+.....
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999986 99999999998776554
Q ss_pred CCcchhhh-h-------------------hHHHHHHhhhhhHHHHHHH---HHHHhhCCCCCCCCH-HHHHHHHHHHHHH
Q 031392 79 NSKIVEDH-S-------------------QHAKEETSNMMTKLEFLEV---AKRKLLGDGLEPCTI-DELQQLENQLERS 134 (160)
Q Consensus 79 ~~~~~~~~-~-------------------e~l~~e~~kl~~~~~~l~~---~~r~~~g~~l~~Ls~-~eL~~Le~~Le~~ 134 (160)
........ . +........+....+.+.. ..+++.|+++.+++. .+|..++.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~ 160 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS 160 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence 43321111 0 1123344445555555543 367889999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHH
Q 031392 135 LSRIRARKNQLFREQIE-KLKEKV 157 (160)
Q Consensus 135 l~~Vr~RK~~ll~~~~~-~l~~k~ 157 (160)
+..++..+...+.+++. .++.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ 184 (195)
T KOG0014|consen 161 LHNSRSSKSKPLSDSNFQVLQEKE 184 (195)
T ss_pred hcCCCCCCCcCCcchhhhhhcccc
Confidence 99999998887777665 444443
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=1.3e-36 Score=194.30 Aligned_cols=75 Identities=76% Similarity=1.040 Sum_probs=72.5
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHHhhhccccc
Q 031392 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDI 76 (160)
Q Consensus 2 ~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~~~~~ 76 (160)
||+||+|++|+|+.+|++||+||++||||||+|||+||||+||+|||||+|++|+|+||++++||+||.+.++..
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~~~ 75 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSGSS 75 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987654
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.98 E-value=1.7e-33 Score=182.57 Aligned_cols=78 Identities=51% Similarity=0.732 Sum_probs=72.9
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccc-hhhHHHHhhhcccccccC
Q 031392 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS-INKTIERYQKKTKDIGIN 79 (160)
Q Consensus 2 ~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~-~~~il~RY~~~~~~~~~~ 79 (160)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+.++|++++ +..++++|...+...+..
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 79 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERKK 79 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhhc
Confidence 899999999999999999999999999999999999999999999999999999988765 999999999988765543
No 4
>smart00432 MADS MADS domain.
Probab=99.97 E-value=1.3e-32 Score=166.36 Aligned_cols=59 Identities=78% Similarity=1.100 Sum_probs=58.0
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCccccccc
Q 031392 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60 (160)
Q Consensus 2 ~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~ 60 (160)
||+||+|++|+|+++|++||+||+.||||||+|||+||||+||+|||||+|++|+|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999886
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=6.9e-32 Score=163.34 Aligned_cols=59 Identities=80% Similarity=1.116 Sum_probs=57.7
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCccccccc
Q 031392 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60 (160)
Q Consensus 2 ~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~ 60 (160)
||+||+|++|+|+..|++||+||++||||||+|||+||||+||+|||||+|++++|++|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 79999999999999999999999999999999999999999999999999999999875
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.95 E-value=3.5e-30 Score=150.96 Aligned_cols=51 Identities=69% Similarity=1.072 Sum_probs=47.0
Q ss_pred eeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccc
Q 031392 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59 (160)
Q Consensus 9 ~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s 59 (160)
|+|+|++.|++||+||+.||||||.|||+||||+||+|||||+|++|+|||
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 589999999999999999999999999999999999999999999999986
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.86 E-value=6.4e-23 Score=157.09 Aligned_cols=75 Identities=37% Similarity=0.553 Sum_probs=66.8
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhh---------HHHHhhhc
Q 031392 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINK---------TIERYQKK 72 (160)
Q Consensus 2 ~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~---------il~RY~~~ 72 (160)
||+||+|++|+|+..|.+||+|||.|+||||+|||||+|.+|-|+|.|.+|.+|+|+.|.++. +|....+.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~ 142 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA 142 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence 799999999999999999999999999999999999999999999999999999999985544 55555665
Q ss_pred cccc
Q 031392 73 TKDI 76 (160)
Q Consensus 73 ~~~~ 76 (160)
+...
T Consensus 143 pd~~ 146 (338)
T KOG0015|consen 143 PDTP 146 (338)
T ss_pred CCCC
Confidence 5544
No 8
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.70 E-value=1.1e-16 Score=107.39 Aligned_cols=77 Identities=40% Similarity=0.605 Sum_probs=73.6
Q ss_pred hhhhhHHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031392 84 EDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKVITF 160 (160)
Q Consensus 84 ~~~~e~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~~~~~~l~~k~~~l 160 (160)
....+.++.++.+++.+++.++..+|++.|+++++||++||..||..|+.+|..||+||.+++++++..|++|++.|
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l 87 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKEREL 87 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999754
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.58 E-value=7e-16 Score=123.39 Aligned_cols=68 Identities=40% Similarity=0.593 Sum_probs=63.4
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHH
Q 031392 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIER 68 (160)
Q Consensus 1 M~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~R 68 (160)
|||+||.|.+|+|+.+|.|||+||+.|++|||+||++|.|.+|.++|.|.+|.+++|+.|..+.|+.-
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~ 148 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKS 148 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999865555443
No 10
>PRK04098 sec-independent translocase; Provisional
Probab=92.13 E-value=0.12 Score=37.30 Aligned_cols=85 Identities=24% Similarity=0.219 Sum_probs=46.1
Q ss_pred ceeeeeecCCCCcccccccchhhHHHHhhhcccccccCCcchhhhhhHHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCH
Q 031392 42 EVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTI 121 (160)
Q Consensus 42 ~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~ 121 (160)
=||||||+|. +++..+-. +...+..|++........ ...+-.+..++.+..+.++.++......+. .+++
T Consensus 14 vVaLlvfGP~-KLP~~~r~-lGk~ir~~K~~~~~~k~~-l~~Ei~~~elk~e~~k~k~~l~~~~~~l~~-------~~~~ 83 (158)
T PRK04098 14 VVAIIFLGPD-KLPQAMVD-IAKFFKAVKKTINDAKST-LDKEINIEEIKEEALKYKKEFESAVESLKK-------KLKF 83 (158)
T ss_pred HHHHhhcCch-HHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-------ccCh
Confidence 4789999995 55544332 444555555543322110 000123445666667776666666655542 2677
Q ss_pred HHHHHHHHHHHHHHH
Q 031392 122 DELQQLENQLERSLS 136 (160)
Q Consensus 122 ~eL~~Le~~Le~~l~ 136 (160)
++|.++-..+.....
T Consensus 84 eel~~~~~~~~~~~~ 98 (158)
T PRK04098 84 EELDDLKITAENEIK 98 (158)
T ss_pred HHHHHHhhhhhhcch
Confidence 777777655554333
No 11
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=90.78 E-value=0.075 Score=25.69 Aligned_cols=14 Identities=36% Similarity=0.888 Sum_probs=11.1
Q ss_pred eeeeeecCCCCccc
Q 031392 43 VALIIFSPRGKLYE 56 (160)
Q Consensus 43 v~~iv~s~~gk~~~ 56 (160)
..+.+|||+|+++.
T Consensus 3 ~~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 3 RSITTFSPDGRLFQ 16 (23)
T ss_dssp SSTTSBBTTSSBHH
T ss_pred CCceeECCCCeEEe
Confidence 45678999999874
No 12
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=85.81 E-value=2.3 Score=25.53 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=27.8
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 110 KLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQ 144 (160)
Q Consensus 110 ~~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ 144 (160)
+..|.+|+.||++||.+-...|+.-+.+++.-...
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999888888887777765433
No 13
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.59 E-value=15 Score=26.48 Aligned_cols=54 Identities=26% Similarity=0.374 Sum_probs=31.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 89 HAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKN 143 (160)
Q Consensus 89 ~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~ 143 (160)
.+...+..+..+++.++..+..+-+ +-...+.+|...++.......+..+.||.
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544444 33336677777777777777777776663
No 14
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=78.83 E-value=1.5 Score=22.63 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=17.7
Q ss_pred hhhcccCcceeeeeecCCCC--ccccccc
Q 031392 34 ELSVLCDAEVALIIFSPRGK--LYEFSSC 60 (160)
Q Consensus 34 ELs~LC~~~v~~iv~s~~gk--~~~~~s~ 60 (160)
.|+--||+-|-+-||...|. +|-.+.|
T Consensus 2 hlcpkcgvgvl~pvy~~kgeikvfrcsnp 30 (36)
T PF09151_consen 2 HLCPKCGVGVLEPVYNQKGEIKVFRCSNP 30 (36)
T ss_dssp -B-TTTSSSBEEEEE-TTS-EEEEEES-T
T ss_pred ccCCccCceEEEEeecCCCcEEEEEcCCC
Confidence 46778999999999999884 4544445
No 15
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=77.61 E-value=20 Score=24.60 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=44.3
Q ss_pred hhhHHHHHHhhhhhHHHHHHHHHHHhhC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 86 HSQHAKEETSNMMTKLEFLEVAKRKLLG----DGLEPCTIDELQQLENQLERSLSRIRARKNQ 144 (160)
Q Consensus 86 ~~e~l~~e~~kl~~~~~~l~~~~r~~~g----~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ 144 (160)
..+.|..++.+|+-+|..|...++.-.| .+-..|+..+=+.+....-.+|...-++|-+
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KIe 66 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKIE 66 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999888888777 6667799999999988888888877777643
No 16
>PHA03162 hypothetical protein; Provisional
Probab=73.37 E-value=28 Score=24.29 Aligned_cols=61 Identities=13% Similarity=0.064 Sum_probs=47.2
Q ss_pred hhhhhHHHHHHhhhhhHHHHHHHHHHHhhCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 84 EDHSQHAKEETSNMMTKLEFLEVAKRKLLGDG----LEPCTIDELQQLENQLERSLSRIRARKNQ 144 (160)
Q Consensus 84 ~~~~e~l~~e~~kl~~~~~~l~~~~r~~~g~~----l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ 144 (160)
+...+.|..++.+|+-+|..|...++.-.|.+ -..|+..+=+.+....-.+|...-++|-+
T Consensus 12 ~~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKIe 76 (135)
T PHA03162 12 QPTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKIE 76 (135)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999999988876655544 33599999988888888888877776643
No 17
>PHA03155 hypothetical protein; Provisional
Probab=72.53 E-value=27 Score=23.74 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=47.0
Q ss_pred hhhhHHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 85 DHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQ 144 (160)
Q Consensus 85 ~~~e~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ 144 (160)
...+.|..++.+|+-++..|...++.-.+++-..|+..+=+.+....-.+|...-++|-+
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~KIe 67 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEKIR 67 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778899999998888888777665555556799999999998888888877776643
No 18
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=72.37 E-value=51 Score=28.06 Aligned_cols=55 Identities=22% Similarity=0.386 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031392 101 LEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKVIT 159 (160)
Q Consensus 101 ~~~l~~~~r~~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~~~~~~l~~k~~~ 159 (160)
+..++.++|++... .-++-|+-.+...+.+.+.++.+|.+++ ..||+.|..|...
T Consensus 405 fR~Vk~~qRkl~e~---~nsl~d~aK~~~~myd~~~~l~~~q~~l-e~qI~~Le~kl~~ 459 (489)
T KOG3684|consen 405 FRSVKWEQRKLSEQ---ANSLVDLAKTQNDMYDLLQELHSRQEEL-EKQIDTLESKLEA 459 (489)
T ss_pred HHHHHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 44555556665543 3477899999999999999999999887 7889988887653
No 19
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=70.50 E-value=18 Score=30.49 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=21.2
Q ss_pred eeeeeecCCCCcccccccchhhHHHHhhhc
Q 031392 43 VALIIFSPRGKLYEFSSCSINKTIERYQKK 72 (160)
Q Consensus 43 v~~iv~s~~gk~~~~~s~~~~~il~RY~~~ 72 (160)
+-.++|+++|++..|. ++.+||..|..+
T Consensus 299 ~Nm~~~d~~g~~~~~~--~~~~Il~~f~~~ 326 (439)
T PHA02592 299 QNITVINENGKLKVYE--NAEDLIRDFVEI 326 (439)
T ss_pred eeEEEEecCCeeeecC--CHHHHHHHHHHH
Confidence 6678889999887773 467888888664
No 20
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=68.52 E-value=26 Score=28.14 Aligned_cols=33 Identities=30% Similarity=0.575 Sum_probs=27.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 114 DGLEPCTIDELQQLENQLERSLSRIRARKNQLF 146 (160)
Q Consensus 114 ~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll 146 (160)
..++.++.++|..+...|...-..|.+++..+-
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~ 233 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELA 233 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999999998888887777653
No 21
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=63.44 E-value=8.6 Score=26.00 Aligned_cols=27 Identities=33% Similarity=0.245 Sum_probs=21.2
Q ss_pred hhhhhcccCcceeeeeecCCCCcccccc
Q 031392 32 AFELSVLCDAEVALIIFSPRGKLYEFSS 59 (160)
Q Consensus 32 a~ELs~LC~~~v~~iv~s~~gk~~~~~s 59 (160)
..+|-.|-||- |+..||++|++.+|-.
T Consensus 3 l~~Lm~lpGv~-AAg~Fs~~G~l~e~~G 29 (108)
T PF09941_consen 3 LDKLMKLPGVV-AAGEFSDDGKLVEYKG 29 (108)
T ss_pred HHHhhcCCCeE-EEEEECCCCeEEeeec
Confidence 46788888885 4577999999998755
No 22
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=60.01 E-value=54 Score=26.37 Aligned_cols=32 Identities=31% Similarity=0.535 Sum_probs=26.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 114 DGLEPCTIDELQQLENQLERSLSRIRARKNQL 145 (160)
Q Consensus 114 ~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~l 145 (160)
.+++.++.++|..+...|......|...+..+
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999998888888888777665
No 23
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=59.76 E-value=55 Score=27.58 Aligned_cols=76 Identities=8% Similarity=0.133 Sum_probs=37.7
Q ss_pred Cccccccc------chh----hHHHHhhhcccccccCCcchhhhhhHHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCHH
Q 031392 53 KLYEFSSC------SIN----KTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTID 122 (160)
Q Consensus 53 k~~~~~s~------~~~----~il~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~~ 122 (160)
..++||+| .+. ..|.+|+-+.+...... -.....+..|..+++.++.... -.+. +++ +
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~fe~pi~ele~ki~el~~~~~-~~~~---~~~-~ 105 (431)
T PLN03230 38 LEHEYPWPEKLPQGELTTGALKILNRFKPLKNKPKPVT-------LPFEKPIVDLENRIDEVRELAN-KTGV---DFS-A 105 (431)
T ss_pred CCCCCCCcccCCCCcccccHHHHHHhcCCCCCCCCCCc-------cchhhHHHHHHHHHHHHHhhhh-cccc---cHH-H
Confidence 34777776 233 36777766544332111 1123445666666666653211 0111 122 4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031392 123 ELQQLENQLERSLSRIRA 140 (160)
Q Consensus 123 eL~~Le~~Le~~l~~Vr~ 140 (160)
|+..|+..++.....|-+
T Consensus 106 ei~~l~~~~~~~~~~i~~ 123 (431)
T PLN03230 106 QIAELEERYDQVRRELYS 123 (431)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 677777776666555543
No 24
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=57.70 E-value=50 Score=24.48 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 123 ELQQLENQLERSLSRIRARKNQLFREQIEKLKEKV 157 (160)
Q Consensus 123 eL~~Le~~Le~~l~~Vr~RK~~ll~~~~~~l~~k~ 157 (160)
+|..-...++.....-+.-.+....++++.|++..
T Consensus 145 ~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~ 179 (189)
T PF10211_consen 145 ELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQN 179 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444556677777777654
No 25
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=57.68 E-value=5.7 Score=30.35 Aligned_cols=24 Identities=21% Similarity=0.571 Sum_probs=19.5
Q ss_pred hcccCcceeeeeecCCCCccc--ccc
Q 031392 36 SVLCDAEVALIIFSPRGKLYE--FSS 59 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~gk~~~--~~s 59 (160)
||=.|-|.|.-+|||+|++|. |+.
T Consensus 3 sIGtGyDls~s~fSpdGrvfQveYA~ 28 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQVEYAQ 28 (254)
T ss_pred cccccccccceeeCCCCceehHHHHH
Confidence 455788999999999999885 544
No 26
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=57.62 E-value=4.5 Score=27.38 Aligned_cols=37 Identities=24% Similarity=0.482 Sum_probs=27.3
Q ss_pred ccccccccccch---------hhhhhhhhcccCcceeeeeecCCCC
Q 031392 17 RQVTFSKRRNGL---------LKKAFELSVLCDAEVALIIFSPRGK 53 (160)
Q Consensus 17 R~~tf~kR~~gl---------~KKa~ELs~LC~~~v~~iv~s~~gk 53 (160)
+-..||+=|+-| +-|..|+.+-||.|+-+++..|.|.
T Consensus 50 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 50 EAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred eEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 334456666645 4456799999999999999998653
No 27
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=57.34 E-value=1.2e+02 Score=25.78 Aligned_cols=60 Identities=20% Similarity=0.488 Sum_probs=35.8
Q ss_pred ceeeecCCCCc-ccccc---ccc-------cchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHHhhhc
Q 031392 7 QMKRIENATSR-QVTFS---KRR-------NGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKK 72 (160)
Q Consensus 7 ~i~~I~~~~~R-~~tf~---kR~-------~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~ 72 (160)
.|.-|.+.+.+ .+.|. ||. ++|+|+ ..|.+--.+ -+++|.|+|++..| ++.+||..|..+
T Consensus 257 ~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~-t~L~~s~~~--Nm~~~~~~g~p~~~---~l~~iL~~f~~~ 327 (445)
T cd00187 257 GISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKV-TKLQTTFGI--NMVAFDPNGRPKKL---NLKEILQEFLDH 327 (445)
T ss_pred ccceeeeccCCCceEEEEEECCCccHHHHHHHHHHh-cCCceeeee--eEEEEecCCeeEEe---CHHHHHHHHHHH
Confidence 35666677666 34442 222 245533 233222222 56778889998888 678899988764
No 28
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=56.54 E-value=1.2e+02 Score=28.63 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=33.0
Q ss_pred eeeeecCCCCcccccccchhhHHHHhhhcccccc---cCCcchhhhhhHHHHHHhhhhhHHHHHHHHHHH
Q 031392 44 ALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIG---INSKIVEDHSQHAKEETSNMMTKLEFLEVAKRK 110 (160)
Q Consensus 44 ~~iv~s~~gk~~~~~s~~~~~il~RY~~~~~~~~---~~~~~~~~~~e~l~~e~~kl~~~~~~l~~~~r~ 110 (160)
+.-+|.++|...-|+.|. -..|-..+...+ -.....++.++.++.+...+++++..++...+.
T Consensus 621 ~~~aytldg~~~~~~g~~----~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~ 686 (1074)
T KOG0250|consen 621 VTKAYTLDGRQIFAGGPN----YRVYSTRGTRARRPGVDEFSFDDEIEDLEREASRLQKEILELENQRRE 686 (1074)
T ss_pred ceeeeccCccccccCCCC----cceeccCCCCCCCccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677877655566663 111111111111 111123566888888888888877666654433
No 29
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=56.51 E-value=7.4 Score=30.40 Aligned_cols=70 Identities=9% Similarity=0.161 Sum_probs=31.4
Q ss_pred hhcccCcceeeeeecCCCCcccccccchhhHHHHhhhcccccccCCcchhhhhhHHHHHHhhhhhHHHHHH
Q 031392 35 LSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLE 105 (160)
Q Consensus 35 Ls~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~~~~~~l~ 105 (160)
|+.|+++-+...++.|. .+..-++++.+.-+.+..+........-...+..++.++.++..|+-+++.+.
T Consensus 12 ~~~l~~~~~~~~~~a~a-~v~~~~~~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~ 81 (263)
T PRK10803 12 LSLLVGVAAPWAAFAQA-PISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQ 81 (263)
T ss_pred HHHHHHHhhhHHHhcCC-cHHHcCCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45566543333333332 11223344555555555544332211101113445566677766665555544
No 30
>PRK04654 sec-independent translocase; Provisional
Probab=56.48 E-value=3.1 Score=31.40 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=17.5
Q ss_pred hhhcccCcceeeeeecCCCCcccccccchhhHHHHhhh
Q 031392 34 ELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK 71 (160)
Q Consensus 34 ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~ 71 (160)
||-+.. =|+||||+|. +++..+- .+...+.+|++
T Consensus 8 ELLlI~--VVALlV~GPe-rLPe~aR-tlGk~irk~R~ 41 (214)
T PRK04654 8 ELTLIA--VVALVVLGPE-RLPKAAR-FAGLWVRRARM 41 (214)
T ss_pred HHHHHH--HHHHHhcCch-HHHHHHH-HHHHHHHHHHH
Confidence 444433 3789999985 4443322 23344444443
No 31
>PRK13824 replication initiation protein RepC; Provisional
Probab=56.25 E-value=29 Score=28.97 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=35.7
Q ss_pred hhhcccCcceeeeee--cCCCCccccccc----------chhhHHHHhhhcccccccCCcchhhhhhHHHHHHhhhhhHH
Q 031392 34 ELSVLCDAEVALIIF--SPRGKLYEFSSC----------SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKL 101 (160)
Q Consensus 34 ELs~LC~~~v~~iv~--s~~gk~~~~~s~----------~~~~il~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~~~~ 101 (160)
-|+.|. +++||++ ||+||=|-.-.+ ++..++.||....... +..+.-+.++..++.++
T Consensus 103 hla~Lv--eaGLI~rrDSpNGKRyarr~~~G~i~~AfGfDLsPL~~R~~El~~~A--------~~~~ae~~~~r~lr~~i 172 (404)
T PRK13824 103 HLAALV--EAGLIIRRDSPNGKRYARKGRGGEIEEAFGFDLAPLLARAEEFEALA--------EQVAAERKALRRLRERL 172 (404)
T ss_pred HHHHHH--HCCCeEeecCCCCcccceeCCCCceeeeeccchHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 345554 5567777 689988754221 4667788886643321 11222234445555555
Q ss_pred HHHHHHHHH
Q 031392 102 EFLEVAKRK 110 (160)
Q Consensus 102 ~~l~~~~r~ 110 (160)
..+....+.
T Consensus 173 t~~rRdi~~ 181 (404)
T PRK13824 173 TLCRRDIAK 181 (404)
T ss_pred HHHHHHHHH
Confidence 555544443
No 32
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=55.86 E-value=59 Score=23.55 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 031392 120 TIDELQQLENQLERSLSRIRARK---NQLFREQIEKLKEKV 157 (160)
Q Consensus 120 s~~eL~~Le~~Le~~l~~Vr~RK---~~ll~~~~~~l~~k~ 157 (160)
+..||.+|..+++.+-.-++++- -.++.+||..|+++-
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA 68 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQA 68 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 56788888888888887777764 446678888888764
No 33
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=55.82 E-value=6.2 Score=29.99 Aligned_cols=16 Identities=44% Similarity=0.872 Sum_probs=13.5
Q ss_pred cceeeeeecCCCCccc
Q 031392 41 AEVALIIFSPRGKLYE 56 (160)
Q Consensus 41 ~~v~~iv~s~~gk~~~ 56 (160)
-|-|+-||||+|+++.
T Consensus 4 ydraltvFSPDGhL~Q 19 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQ 19 (249)
T ss_pred cccceEEECCCCCEEe
Confidence 4678999999999875
No 34
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=55.09 E-value=11 Score=26.90 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=25.9
Q ss_pred cCcceeeeeecCCCCccccccc-chhhHHHHhhhc
Q 031392 39 CDAEVALIIFSPRGKLYEFSSC-SINKTIERYQKK 72 (160)
Q Consensus 39 C~~~v~~iv~s~~gk~~~~~s~-~~~~il~RY~~~ 72 (160)
|+...++-|..++|++.+|..| .+.+|+..|=.+
T Consensus 12 ~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h 46 (181)
T PF14009_consen 12 SSSAATVKVVHPDGKVEEFKRPVTAAEVMLENPGH 46 (181)
T ss_pred cCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCC
Confidence 3444555555589999999888 899999998665
No 35
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=54.99 E-value=73 Score=22.53 Aligned_cols=85 Identities=24% Similarity=0.286 Sum_probs=39.3
Q ss_pred eecCCCCcccccccchhhHHHHhhhcccccccCCcchhhhhh-HHHHHHhhhhhH-HHHHHHHHHH-hh----CCCCCCC
Q 031392 47 IFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQ-HAKEETSNMMTK-LEFLEVAKRK-LL----GDGLEPC 119 (160)
Q Consensus 47 v~s~~gk~~~~~s~~~~~il~RY~~~~~~~~~~~~~~~~~~e-~l~~e~~kl~~~-~~~l~~~~r~-~~----g~~l~~L 119 (160)
||.|.. |..|+.+ +|+...+.++++..-....+..++ ....++.+|+.+ ...++..+.. +. +..-.++
T Consensus 1 vf~~~~-pv~fS~~----ll~~L~~s~etD~sR~q~~e~~iq~Rva~eL~~L~~~~~~~~~~~l~~~~~~ed~~~~~~~l 75 (142)
T PF07956_consen 1 VFTPST-PVQFSQS----LLSQLQSSTETDSSRAQTLELHIQERVAEELKRLEEEELKKFEEALEKSLLSEDEKDQDPGL 75 (142)
T ss_pred CCCCCC-CcccCHH----HHHHHhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 456654 3345433 566666655554322111122233 245566666533 2233322222 22 2334567
Q ss_pred CHHHHHHHHHHHHHHHH
Q 031392 120 TIDELQQLENQLERSLS 136 (160)
Q Consensus 120 s~~eL~~Le~~Le~~l~ 136 (160)
|...+..=...|...|.
T Consensus 76 Ss~~v~~~i~~L~~kLe 92 (142)
T PF07956_consen 76 SSKSVNEEIEKLREKLE 92 (142)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 77666665555555555
No 36
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=54.87 E-value=14 Score=24.44 Aligned_cols=30 Identities=37% Similarity=0.350 Sum_probs=23.1
Q ss_pred hhhhhhhcccCcceeeeeecCCCCccccccc
Q 031392 30 KKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60 (160)
Q Consensus 30 KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~ 60 (160)
.|..||--+-||-+| =.|||+|++.+|-++
T Consensus 3 ekLdeLlqi~Gv~AA-Gefs~DGkLv~Ykgd 32 (109)
T COG4831 3 EKLDELLQIKGVMAA-GEFSPDGKLVEYKGD 32 (109)
T ss_pred hhHHHHhCccceeEe-ceeCCCCceEEeeCC
Confidence 456778777777544 569999999998775
No 37
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=53.96 E-value=11 Score=28.53 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=36.5
Q ss_pred ccchhhhh----hhhhcccCcceeeeeecCCC---CcccccccchhhHHHHhhhc
Q 031392 25 RNGLLKKA----FELSVLCDAEVALIIFSPRG---KLYEFSSCSINKTIERYQKK 72 (160)
Q Consensus 25 ~~gl~KKa----~ELs~LC~~~v~~iv~s~~g---k~~~~~s~~~~~il~RY~~~ 72 (160)
++-|+.|. .|++|=+|-++.|++.+|+. ....|+..-++.|+..|...
T Consensus 34 ~~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~~ 88 (214)
T PF10491_consen 34 QTRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKPV 88 (214)
T ss_pred HHHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHHH
Confidence 34566665 79999999999999999863 34458886688888877654
No 38
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=52.80 E-value=83 Score=22.54 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=38.6
Q ss_pred hhhHHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 86 HSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLF 146 (160)
Q Consensus 86 ~~e~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll 146 (160)
.+..++.++..++.++..++.++..+. ..++.+||......|+.-+..+.+|-..+-
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~----~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLS----SEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666655554 456788888888888887777777776553
No 39
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=51.73 E-value=12 Score=24.93 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=35.1
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhcccCc----ceeeeeecCCCCccccccc
Q 031392 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDA----EVALIIFSPRGKLYEFSSC 60 (160)
Q Consensus 1 M~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~----~v~~iv~s~~gk~~~~~s~ 60 (160)
|||+|...+.|-. .|+-.+.|+-+.++= -+|.++.|-+ .+++++.+..|--|++--|
T Consensus 1 MG~rr~krr~~ik--~~~~~L~k~FtCp~C-ghe~vs~ctvkk~~~~g~~~Cg~CGls~e~ev~ 61 (104)
T COG4888 1 MGRRRRKRRKIIK--RRPQVLPKTFTCPRC-GHEKVSSCTVKKTVNIGTAVCGNCGLSFECEVP 61 (104)
T ss_pred CCcccccccccCc--ccCccCCceEecCcc-CCeeeeEEEEEecCceeEEEcccCcceEEEecc
Confidence 9999988887654 233335555544432 2455555544 4677888888877766444
No 40
>PF14282 FlxA: FlxA-like protein
Probab=50.84 E-value=72 Score=21.23 Aligned_cols=57 Identities=19% Similarity=0.252 Sum_probs=35.6
Q ss_pred HhhhhhHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 94 TSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEK 152 (160)
Q Consensus 94 ~~kl~~~~~~l~~~~r~~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~~~~~~ 152 (160)
+..|.+++..|+..+..+... .+++.++-..-...|..-+..+.....++..++...
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~~--~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQD--SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHcc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443332 556888888888888888888888877776665544
No 41
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=50.43 E-value=58 Score=25.93 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=30.8
Q ss_pred ceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCccccc-ccchhhHHHHhhh
Q 031392 7 QMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFS-SCSINKTIERYQK 71 (160)
Q Consensus 7 ~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~-s~~~~~il~RY~~ 71 (160)
.+..|.|.+.|..+=++ .||..|.+ |.| .|- .|.|++|++.|..
T Consensus 25 n~~li~n~tqr~t~~sR-------------~L~Ecel~---~~p-----~Y~nDpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKSR-------------LLAEIQRP---KNP-----HYHNDPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccce-------------ehhhhccc---cCC-----CCCCcHHHHHHHHHHhH
Confidence 46789999888766333 46777765 444 343 4799999999865
No 42
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.96 E-value=1.3e+02 Score=23.78 Aligned_cols=34 Identities=15% Similarity=0.362 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKE 155 (160)
Q Consensus 121 ~~eL~~Le~~Le~~l~~Vr~RK~~ll~~~~~~l~~ 155 (160)
-.++..|+..|+..-.+|++|.+ ++.++..-++.
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~-~l~~raRAmq~ 112 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQE-LLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 45888899999999999999984 45666655543
No 43
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=49.43 E-value=74 Score=25.26 Aligned_cols=60 Identities=18% Similarity=0.418 Sum_probs=39.0
Q ss_pred CCccccccccccch---------hhhhhhhhcccCcceeeeeecCCCCc-------cccccc-----chhhHHHHhhhcc
Q 031392 15 TSRQVTFSKRRNGL---------LKKAFELSVLCDAEVALIIFSPRGKL-------YEFSSC-----SINKTIERYQKKT 73 (160)
Q Consensus 15 ~~R~~tf~kR~~gl---------~KKa~ELs~LC~~~v~~iv~s~~gk~-------~~~~s~-----~~~~il~RY~~~~ 73 (160)
+.+-|.||+-|..| +-+.-.++|-||-|.-..+.-|+|.- .-|+.. +++.+|..-++..
T Consensus 180 ~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f~v~q~g~gfCHl~t~~Cfg~~~~gL~~LEs~l~~Rk~~a 259 (359)
T KOG4311|consen 180 SGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIFLVTQDGPGFCHLGTETCFGTSVFGLYSLESILSKRKETA 259 (359)
T ss_pred cCcceEEecccceeeeccccCcCceeeEEEeeccCccceEEEEecCCCcccccCcceeeeeechhhhhHHHHHHHhhhcC
Confidence 45667777777744 44455789999999888777787762 223332 6788766555543
Q ss_pred c
Q 031392 74 K 74 (160)
Q Consensus 74 ~ 74 (160)
+
T Consensus 260 P 260 (359)
T KOG4311|consen 260 P 260 (359)
T ss_pred C
Confidence 3
No 44
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=49.18 E-value=1.1e+02 Score=23.60 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=26.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 031392 113 GDGLEPCTIDELQQLENQLERSLSRIRARK 142 (160)
Q Consensus 113 g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK 142 (160)
|.+..+++..+|...-...+..|..||.|-
T Consensus 114 ~~~~~~~~~~~l~~~l~ea~~mL~emr~r~ 143 (264)
T PF06008_consen 114 NENGDQLPSEDLQRALAEAQRMLEEMRKRD 143 (264)
T ss_pred CcccCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 447788999999999999999999999984
No 45
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=48.88 E-value=1.7e+02 Score=25.04 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156 (160)
Q Consensus 118 ~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~~~~~~l~~k 156 (160)
..++.++.++-..+...+..++.+...+ ..++..++++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 160 (525)
T TIGR02231 123 EPDLKEWFQAFDFNGSEIERLLTEDREA-ERRIRELEKQ 160 (525)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 5688999999999988888888877665 3344444433
No 46
>PRK00182 tatB sec-independent translocase; Provisional
Probab=48.75 E-value=7.4 Score=28.18 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=21.7
Q ss_pred hhhcccCcceeeeeecCCCCcccccccchhhHHHHhhhcc
Q 031392 34 ELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKT 73 (160)
Q Consensus 34 ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~~ 73 (160)
||-++. =||||||+| ++++.... .+...+..|++..
T Consensus 9 EllvIl--vIaLlVfGP-erLP~~~r-~lg~~ir~~R~~~ 44 (160)
T PRK00182 9 EILLLL--IVGLIVIGP-ERLPRLIE-DVRAALLAARTAI 44 (160)
T ss_pred HHHHHH--HHHHHhcCc-hHHHHHHH-HHHHHHHHHHHHH
Confidence 555554 478999999 45655443 2555555665543
No 47
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=48.53 E-value=15 Score=29.74 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=21.1
Q ss_pred hcccCcceeeeeecCC--CCccc-ccccc
Q 031392 36 SVLCDAEVALIIFSPR--GKLYE-FSSCS 61 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~--gk~~~-~~s~~ 61 (160)
+++-|..+|++.|+++ ||.|+ |+.+.
T Consensus 83 ~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~ 111 (356)
T cd01365 83 HAFEGYNVCLFAYGQTGSGKSYTMMGYKE 111 (356)
T ss_pred HHhCCCceEEEEecCCCCCCeEEecCCCC
Confidence 5789999999999975 58887 76653
No 48
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=48.32 E-value=61 Score=23.84 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=34.0
Q ss_pred cceeeeee--cCCCCccccccc----------chhhHHHHhhhcccccccCCcchhhhhhHHHHHHhhhhhHHHHHHHHH
Q 031392 41 AEVALIIF--SPRGKLYEFSSC----------SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAK 108 (160)
Q Consensus 41 ~~v~~iv~--s~~gk~~~~~s~----------~~~~il~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~~~~~~l~~~~ 108 (160)
+++++|++ ||+||=|..-++ +...++.||....... +..+........++.++..+...+
T Consensus 96 veaGLI~rrDS~NgkRy~~R~~~G~I~~A~GfdLsPL~~R~~El~~~a--------~~~~~~~~~~r~lr~~it~~rR~i 167 (177)
T PF03428_consen 96 VEAGLIVRRDSPNGKRYARRDRGGRIVEAFGFDLSPLIARAEELAALA--------EAARAERRALRRLRRRITLLRRDI 167 (177)
T ss_pred HHCCCeeeccCCCCCccCccCCCCCEEeEeCcCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888 488987654322 4667777876643321 112223344455555555554444
Q ss_pred HH
Q 031392 109 RK 110 (160)
Q Consensus 109 r~ 110 (160)
+.
T Consensus 168 ~~ 169 (177)
T PF03428_consen 168 RK 169 (177)
T ss_pred HH
Confidence 33
No 49
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=47.27 E-value=83 Score=28.50 Aligned_cols=90 Identities=14% Similarity=0.184 Sum_probs=41.5
Q ss_pred eeeeeecCCCCccccccc-----chhhHHHHhhhcccccccCCcchhhhhhHHHHHHhhhhhHHHHHHHHHHHhhCCCCC
Q 031392 43 VALIIFSPRGKLYEFSSC-----SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLE 117 (160)
Q Consensus 43 v~~iv~s~~gk~~~~~s~-----~~~~il~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~~~~~~l~~~~r~~~g~~l~ 117 (160)
+.|+.---.|+-++|||| ++..-.-+|.+.-.+-..+... ..-....-+..|..+++.++..-.. .+.+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ldfEkpi~ele~ki~el~~~~~~-~~~~-- 123 (762)
T PLN03229 50 LAVVAKIRKGKKHEYPWPADPDPNVKGGVLSYLSHFKPLKEKPKP---VTLDFEKPLVDLEKKIVDVRKMANE-TGLD-- 123 (762)
T ss_pred eEEEeeeccccccCCCCCCCCCCCcccchhhHhhccCCCCCCCCC---CCcchhhHHHHHHHHHHHHHhhhhc-cccc--
Confidence 444444466777777776 3443333343332221111111 0111234456666666666532110 1111
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 031392 118 PCTIDELQQLENQLERSLSRIRA 140 (160)
Q Consensus 118 ~Ls~~eL~~Le~~Le~~l~~Vr~ 140 (160)
+ -+++..|+..++.....|-.
T Consensus 124 -~-~~ei~~Le~k~~~~~~~iy~ 144 (762)
T PLN03229 124 -F-SDQIISLESKYQQALKDLYT 144 (762)
T ss_pred -H-HHHHHHHHHHHHHHHHHHHc
Confidence 1 24677777777766665543
No 50
>COG4052 Uncharacterized protein related to methyl coenzyme M reductase subunit C [General function prediction only]
Probab=46.39 E-value=17 Score=28.13 Aligned_cols=44 Identities=30% Similarity=0.328 Sum_probs=30.3
Q ss_pred hhhhhhhh------hcccCcceeeeeecCCCCccccccc--chhhHHHHhhhcc
Q 031392 28 LLKKAFEL------SVLCDAEVALIIFSPRGKLYEFSSC--SINKTIERYQKKT 73 (160)
Q Consensus 28 l~KKa~EL------s~LC~~~v~~iv~s~~gk~~~~~s~--~~~~il~RY~~~~ 73 (160)
+-+||.|| +-|.|+++|+| ||+=.-+..|+| .+.+-|.||-..+
T Consensus 54 vk~~A~ellG~i~~aPlaGtEIAvV--sptLarHHlPHsaCDiaEYLRr~GAk~ 105 (310)
T COG4052 54 VKEKAGELLGKIIEAPLAGTEIAVV--SPTLARHHLPHSACDIAEYLRRPGAKT 105 (310)
T ss_pred HHHHHHHhhhhheecccCCceEEEe--ccchhhccCCCchhhHHHHHhccCCCc
Confidence 34678887 78999999987 776666667776 5555555554433
No 51
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=46.30 E-value=52 Score=20.66 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=27.0
Q ss_pred HHHHhhhcccccccCCcchhhhhhHHHHHHhhhhhHHHHHHHH
Q 031392 65 TIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVA 107 (160)
Q Consensus 65 il~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~~~~~~l~~~ 107 (160)
++-.|.+........+....+.++.+....++|.++++.+|.-
T Consensus 22 l~lHY~~k~~~~~~ls~~d~~~L~~L~~~a~rm~eRI~tLE~I 64 (75)
T TIGR02976 22 LILHYRSKRKTAASLSTDDQALLQELYAKADRLEERIDTLERI 64 (75)
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556765544433322222345677888889999999888853
No 52
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=46.27 E-value=6.1 Score=27.37 Aligned_cols=41 Identities=27% Similarity=0.476 Sum_probs=28.8
Q ss_pred ecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCccc
Q 031392 11 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYE 56 (160)
Q Consensus 11 I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~ 56 (160)
|.++.....||.=.-..+..+.-+|+.+| ++.|+|.|+-|.
T Consensus 41 v~~k~~ytktF~V~vaN~s~~~idLsk~C-----f~a~~~~gk~f~ 81 (124)
T PF14263_consen 41 VGGKSFYTKTFDVTVANLSDKDIDLSKMC-----FKAYSPDGKEFK 81 (124)
T ss_dssp ETTEEEEEEEEEEEEEE-SSS-EE-TT-E-----EEEEETTS-EEE
T ss_pred ecCccceEEEEEEEEecCCCCccccccch-----hhhccccCCEEE
Confidence 45666677788888888999999999886 899999998653
No 53
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=46.15 E-value=1e+02 Score=25.88 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=35.7
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHhhCC-CCCCCCHHHHHHHHHHHHHHHH
Q 031392 87 SQHAKEETSNMMTKLEFLEVAKRKLLGD-GLEPCTIDELQQLENQLERSLS 136 (160)
Q Consensus 87 ~e~l~~e~~kl~~~~~~l~~~~r~~~g~-~l~~Ls~~eL~~Le~~Le~~l~ 136 (160)
...++....+++.....++.......-| ..+-++.+|+..+...+...+.
T Consensus 257 ~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~grl~~~Dl~~i~~~lr~l~~ 307 (459)
T PF10337_consen 257 LKKLKATKAKLRALYAKLQAALRFLKLEISYGRLSPDDLKPIFSLLRSLMI 307 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHeeecCCHHHHHHHHHHHHHHHH
Confidence 3567777777777777777766654433 5667899999999888777444
No 54
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=45.30 E-value=1.2e+02 Score=22.79 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=20.1
Q ss_pred cCcceeeeeecCCCCcccccccchhhHHHHhhhcc
Q 031392 39 CDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKT 73 (160)
Q Consensus 39 C~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~~ 73 (160)
-||.+||+|||-++.- |.+.+++=|....
T Consensus 91 rgaqa~vLVFSTTDr~------SFea~~~w~~kv~ 119 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRY------SFEATLEWYNKVQ 119 (246)
T ss_pred ccccceEEEEecccHH------HHHHHHHHHHHHH
Confidence 5899999999988742 2455666665543
No 55
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=45.14 E-value=8.3 Score=24.30 Aligned_cols=37 Identities=30% Similarity=0.529 Sum_probs=26.6
Q ss_pred ccccccccccchhhh---------hhhhhcccCcceeeeeecCCCC
Q 031392 17 RQVTFSKRRNGLLKK---------AFELSVLCDAEVALIIFSPRGK 53 (160)
Q Consensus 17 R~~tf~kR~~gl~KK---------a~ELs~LC~~~v~~iv~s~~gk 53 (160)
+-+-||+-|++|-.| +.|+.+-||.|+-++..-|.|.
T Consensus 18 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 18 RATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp B-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred cEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 334457777777554 5789999999999999998886
No 56
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=44.68 E-value=76 Score=19.70 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 031392 119 CTIDELQQLENQLERSLSRIRA 140 (160)
Q Consensus 119 Ls~~eL~~Le~~Le~~l~~Vr~ 140 (160)
++++.+..||..+..++..|..
T Consensus 1 M~~E~l~~LE~ki~~aveti~~ 22 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIAL 22 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888777754
No 57
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=44.63 E-value=85 Score=20.30 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=45.0
Q ss_pred chhhHHHHhhhcccccccCCcchhhhhhHHHHHHhhhhhHHHHHHHHHHHhhCCC--CCCCCHHHHHHHHHHHHHHHHHH
Q 031392 61 SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDG--LEPCTIDELQQLENQLERSLSRI 138 (160)
Q Consensus 61 ~~~~il~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~~~~~~l~~~~r~~~g~~--l~~Ls~~eL~~Le~~Le~~l~~V 138 (160)
.+..++.+|........ ...........+...+..+...+++++....-....+ + +++..|+..-...+...-..|
T Consensus 16 ~l~~~~~~~~~~~~~~~-~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF-~l~~~Ei~~Rr~fv~~~~~~i 93 (97)
T PF09177_consen 16 RLESLYRRWQRLRSDTS-SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKF-NLSEEEISRRRQFVSAIRNQI 93 (97)
T ss_dssp HHHHHHHHHHHHTTHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-T-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCC-CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-CCCHHHHHHHHHHHHHHHHHH
Confidence 46677777777655443 1000112233466777777778888877765543322 3 677778887777776665555
Q ss_pred H
Q 031392 139 R 139 (160)
Q Consensus 139 r 139 (160)
.
T Consensus 94 ~ 94 (97)
T PF09177_consen 94 K 94 (97)
T ss_dssp H
T ss_pred H
Confidence 4
No 58
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=44.46 E-value=40 Score=20.52 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031392 97 MMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRI 138 (160)
Q Consensus 97 l~~~~~~l~~~~r~~~g~~l~~Ls~~eL~~Le~~Le~~l~~V 138 (160)
++++++.++-.+-.+...-+.+-+.++|.+.+..++..-+++
T Consensus 23 lr~eiealkY~N~yL~~~~v~~~g~~gl~~~~~e~~r~~~~~ 64 (66)
T PF07438_consen 23 LRKEIEALKYMNDYLFDQFVRDNGYEGLEEYEIEIERIKKDF 64 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh
Confidence 345555555444444444555667778888888888766554
No 59
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.78 E-value=2.9e+02 Score=26.23 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 119 CTIDELQQLENQLERSLSRIRARKN 143 (160)
Q Consensus 119 Ls~~eL~~Le~~Le~~l~~Vr~RK~ 143 (160)
-.++++..+...++..-..|.+...
T Consensus 738 ~~~~~~~~~~e~v~e~~~~Ike~~~ 762 (1174)
T KOG0933|consen 738 KLLDDLKELLEEVEESEQQIKEKER 762 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666555555443
No 60
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=43.64 E-value=73 Score=20.00 Aligned_cols=43 Identities=28% Similarity=0.187 Sum_probs=26.9
Q ss_pred HHHHhhhcccccccCCcchhhhhhHHHHHHhhhhhHHHHHHHH
Q 031392 65 TIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVA 107 (160)
Q Consensus 65 il~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~~~~~~l~~~ 107 (160)
++-.|.+.....+..+..+.+.++.+....+++.++++.+|.-
T Consensus 22 L~lHY~sk~~~~~gLs~~d~~~L~~L~~~a~rm~eRI~tLE~I 64 (75)
T PF06667_consen 22 LILHYRSKWKSSQGLSEEDEQRLQELYEQAERMEERIETLERI 64 (75)
T ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556665443333333223345677888889999999888854
No 61
>PHA01750 hypothetical protein
Probab=42.92 E-value=78 Score=19.38 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHh
Q 031392 146 FREQIEKLKEKVI 158 (160)
Q Consensus 146 l~~~~~~l~~k~~ 158 (160)
+.+|+..+++|+.
T Consensus 61 l~~qv~eik~k~d 73 (75)
T PHA01750 61 LSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHhhc
Confidence 3555555555543
No 62
>PRK14625 hypothetical protein; Provisional
Probab=42.47 E-value=1.1e+02 Score=20.73 Aligned_cols=66 Identities=8% Similarity=0.067 Sum_probs=43.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHh---------------hCC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 89 HAKEETSNMMTKLEFLEVAKRKL---------------LGD--------GLEPCTIDELQQLENQLERSLSRIRARKNQL 145 (160)
Q Consensus 89 ~l~~e~~kl~~~~~~l~~~~r~~---------------~g~--------~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~l 145 (160)
.+-.+..+++++++.++.++... .|. +.+-++.+|..-|+..|-.+.+....+-++.
T Consensus 6 ~mmkqaq~mQ~km~~~Q~el~~~~v~g~sggG~VkV~~~G~~~v~~I~Idp~ll~~eD~e~LeDLI~aA~NdA~~k~~~~ 85 (109)
T PRK14625 6 GLMKQAQAMQQKLADAQARLAETTVEGTSGGGMVTVTLMGNGELVRVLMDESLVQPGEGEVIADLIVAAHADAKKKLDAK 85 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCceEEEEEECHHHcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777776666441 221 2234677788888888888888888888877
Q ss_pred HHHHHHHHH
Q 031392 146 FREQIEKLK 154 (160)
Q Consensus 146 l~~~~~~l~ 154 (160)
..+.+..+.
T Consensus 86 ~~~~m~~~t 94 (109)
T PRK14625 86 QAQLMQEAA 94 (109)
T ss_pred HHHHHHHHh
Confidence 767666553
No 63
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=42.12 E-value=16 Score=32.30 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.0
Q ss_pred hcccCcceeeeeecCCCCcccc
Q 031392 36 SVLCDAEVALIIFSPRGKLYEF 57 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~gk~~~~ 57 (160)
|+|.|+-++||+|.++|.++.|
T Consensus 374 ~VLsgvtaGVi~~d~~g~i~t~ 395 (712)
T COG5000 374 AVLSGLTAGVIGFDNRGCITTV 395 (712)
T ss_pred HHHhcCceeEEEEcCCCeeEee
Confidence 6999999999999999988774
No 64
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=41.86 E-value=19 Score=29.78 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=27.1
Q ss_pred hhhhcccCcce--eeeeecCCCCccccccc-----chhhHHHHhhhccc
Q 031392 33 FELSVLCDAEV--ALIIFSPRGKLYEFSSC-----SINKTIERYQKKTK 74 (160)
Q Consensus 33 ~ELs~LC~~~v--~~iv~s~~gk~~~~~s~-----~~~~il~RY~~~~~ 74 (160)
+=|||+||-+| |||--..+|= -|+.| ++++.+..|...+-
T Consensus 367 yalSV~~~~~V~HClIy~tatG~--GFa~pyn~y~tlk~lV~hY~h~SL 413 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQTATGF--GFAEPYNLYSTLKELVLHYQHTSL 413 (464)
T ss_pred eEEEEEECCceeeeEEeeccccc--cccchhHHHHHHHHHHHHHhhhhH
Confidence 45899999776 5554445554 44444 78889999987553
No 65
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=41.08 E-value=23 Score=21.51 Aligned_cols=29 Identities=17% Similarity=0.537 Sum_probs=18.6
Q ss_pred cCcceeeeeecCCCCccccccc-chhhHHHH
Q 031392 39 CDAEVALIIFSPRGKLYEFSSC-SINKTIER 68 (160)
Q Consensus 39 C~~~v~~iv~s~~gk~~~~~s~-~~~~il~R 68 (160)
|+.--.++|+ |.|..|...+| .+.+|++.
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~~~~~il~~ 76 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPEDVEEIVEE 76 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHHHHHHHHHh
Confidence 5544445544 67777777776 67777765
No 66
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=40.96 E-value=24 Score=28.08 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=20.0
Q ss_pred hcccCcceeeeeecCC--CCccc-cccc
Q 031392 36 SVLCDAEVALIIFSPR--GKLYE-FSSC 60 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~--gk~~~-~~s~ 60 (160)
+++.|.++|+++|+++ ||.|+ |+++
T Consensus 73 ~~~~G~~~~i~~yG~tgSGKT~tl~G~~ 100 (328)
T cd00106 73 SVLEGYNGTIFAYGQTGSGKTYTMFGSP 100 (328)
T ss_pred HHhCCCceeEEEecCCCCCCeEEecCCC
Confidence 4578999999999975 68887 6654
No 67
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=39.54 E-value=26 Score=28.15 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=20.4
Q ss_pred hcccCcceeeeeecCC--CCccc-cccc
Q 031392 36 SVLCDAEVALIIFSPR--GKLYE-FSSC 60 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~--gk~~~-~~s~ 60 (160)
+++-|.++|+++|+++ ||.|+ |+++
T Consensus 76 ~~~~G~n~~i~ayG~tgSGKTyTm~G~~ 103 (333)
T cd01371 76 SVLEGYNGTIFAYGQTGTGKTFTMEGVR 103 (333)
T ss_pred HHhCCCceeEEecCCCCCCCcEeecCCC
Confidence 7889999999999975 68887 6643
No 68
>PRK03100 sec-independent translocase; Provisional
Probab=39.24 E-value=14 Score=26.03 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=18.4
Q ss_pred hhhcccCcceeeeeecCCCCcccccccchhhHHHHhhh
Q 031392 34 ELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK 71 (160)
Q Consensus 34 ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~ 71 (160)
||-|+. =||||||+|. +++.... .+...+..|..
T Consensus 9 EllvI~--vVaLvv~GPk-rLP~~~r-~lG~~vr~~R~ 42 (136)
T PRK03100 9 EMLVLV--VAGLVILGPE-RLPGAIR-WTARALRQARD 42 (136)
T ss_pred HHHHHH--HHHHhhcCch-HHHHHHH-HHHHHHHHHHH
Confidence 444443 4789999985 4444332 23444445544
No 69
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=38.99 E-value=20 Score=25.26 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=18.5
Q ss_pred hhcccCcceeeeeecCCCCccccc
Q 031392 35 LSVLCDAEVALIIFSPRGKLYEFS 58 (160)
Q Consensus 35 Ls~LC~~~v~~iv~s~~gk~~~~~ 58 (160)
+.++|||||-++|-+-+.+-..||
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~ 82 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFP 82 (148)
T ss_pred HHHhhccceeeeeecccCccccCC
Confidence 578999999999999776544443
No 70
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=38.99 E-value=22 Score=25.96 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=22.9
Q ss_pred hhhhhhhh--hcccCcceeeeeecCC--CCccc-cccc
Q 031392 28 LLKKAFEL--SVLCDAEVALIIFSPR--GKLYE-FSSC 60 (160)
Q Consensus 28 l~KKa~EL--s~LC~~~v~~iv~s~~--gk~~~-~~s~ 60 (160)
+|..+..+ .++.|-++|+++|+++ ||.|+ |+++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~ 45 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR 45 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCC
Confidence 34444433 5678999999999976 68777 5443
No 71
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=37.75 E-value=28 Score=28.16 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=20.5
Q ss_pred hcccCcceeeeeecCC--CCccc-cccc
Q 031392 36 SVLCDAEVALIIFSPR--GKLYE-FSSC 60 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~--gk~~~-~~s~ 60 (160)
+++-|..+|+++|+++ ||.|+ |+++
T Consensus 83 ~~l~G~n~ti~aYGqtGSGKTyTm~G~~ 110 (345)
T cd01368 83 DLLKGKNSLLFTYGVTNSGKTYTMQGSP 110 (345)
T ss_pred HHhCCCceEEEEeCCCCCCCeEEecCCC
Confidence 5678999999999975 58887 6665
No 72
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=37.62 E-value=19 Score=28.69 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=18.7
Q ss_pred hcccCcceeeeeecCC--CCccc-ccc
Q 031392 36 SVLCDAEVALIIFSPR--GKLYE-FSS 59 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~--gk~~~-~~s 59 (160)
+++-|.++|+++|+++ ||.|+ |++
T Consensus 69 ~~l~G~n~~i~ayG~tgSGKT~Tm~G~ 95 (335)
T PF00225_consen 69 SVLDGYNATIFAYGQTGSGKTYTMFGS 95 (335)
T ss_dssp HHHTT-EEEEEEEESTTSSHHHHHTBS
T ss_pred HhhcCCceEEEeecccccccccccccc
Confidence 5789999999999975 58876 665
No 73
>PRK14627 hypothetical protein; Provisional
Probab=37.39 E-value=1.2e+02 Score=20.00 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKL 153 (160)
Q Consensus 118 ~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~~~~~~l 153 (160)
-++.+|..-|+..|-.+++....+..+...+.+..+
T Consensus 57 ll~~ed~e~LeDLI~aA~N~A~~k~~~~~~~~m~~~ 92 (100)
T PRK14627 57 VVDPDDVEMLQDLLLVAINDASRKAQQLAEERMQPL 92 (100)
T ss_pred HcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466678888888888888888888887776666554
No 74
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=37.16 E-value=1.5e+02 Score=25.88 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=27.5
Q ss_pred HHHHHHhhh--hhHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031392 89 HAKEETSNM--MTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRA 140 (160)
Q Consensus 89 ~l~~e~~kl--~~~~~~l~~~~r~~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~ 140 (160)
.|...+..| +.+++.++.....+...++. ++.++.+....++.....+++
T Consensus 179 ~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik--~p~~i~~~~~e~d~lk~e~~~ 230 (555)
T TIGR03545 179 KWKKRKKDLPNKQDLEEYKKRLEAIKKKDIK--NPLELQKIKEEFDKLKKEGKA 230 (555)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHHH
Confidence 455556666 45566666655556555555 445555555555544444444
No 75
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=36.97 E-value=26 Score=18.19 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=13.5
Q ss_pred ceeeeeecCCCCccccccc
Q 031392 42 EVALIIFSPRGKLYEFSSC 60 (160)
Q Consensus 42 ~v~~iv~s~~gk~~~~~s~ 60 (160)
.-.-..|||+|+-..|++.
T Consensus 10 ~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEE
T ss_pred cccCEEEecCCCEEEEEec
Confidence 4455789999998888774
No 76
>PLN02372 violaxanthin de-epoxidase
Probab=36.18 E-value=2.7e+02 Score=23.59 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=8.6
Q ss_pred eeeeeecCCCCccc
Q 031392 43 VALIIFSPRGKLYE 56 (160)
Q Consensus 43 v~~iv~s~~gk~~~ 56 (160)
-+.|||.++|.++.
T Consensus 316 gGAVvyTrs~~lP~ 329 (455)
T PLN02372 316 GGAVVYTRSSTLPE 329 (455)
T ss_pred cceEEEecCCCCCh
Confidence 35677777776553
No 77
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=35.96 E-value=28 Score=27.75 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=20.3
Q ss_pred hcccCcceeeeeecCC--CCccc-ccccc
Q 031392 36 SVLCDAEVALIIFSPR--GKLYE-FSSCS 61 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~--gk~~~-~~s~~ 61 (160)
+++-|.+++++.|+++ ||.|+ |+.+.
T Consensus 71 ~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~ 99 (325)
T cd01369 71 DVLNGYNGTIFAYGQTGSGKTYTMEGPPG 99 (325)
T ss_pred HHHcCccceEEEeCCCCCCceEEecCCCC
Confidence 4689999999999975 68887 55543
No 78
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=35.85 E-value=37 Score=22.14 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=27.2
Q ss_pred ccCcceeeeeecCCC-Cccccccc-chhhHHHHhhhcc
Q 031392 38 LCDAEVALIIFSPRG-KLYEFSSC-SINKTIERYQKKT 73 (160)
Q Consensus 38 LC~~~v~~iv~s~~g-k~~~~~s~-~~~~il~RY~~~~ 73 (160)
+|..+--|.|+.|.| -.|....| .+.+|++.+...+
T Consensus 44 ~C~~ePlV~V~~p~g~v~Y~~V~~edv~~Iv~~~~~~~ 81 (92)
T cd03063 44 MYWLEPLVEVETPGGRVAYGPVTPADVASLLDAGALEG 81 (92)
T ss_pred ecCCCCEEEEEeCCCcEEEEeCCHHHHHHHHHHHhhcC
Confidence 588888888887877 45555556 7999999987743
No 79
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=35.24 E-value=37 Score=21.54 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=21.9
Q ss_pred ceeeeeecCCC--Cccccccc-chhhHHHHhhh
Q 031392 42 EVALIIFSPRG--KLYEFSSC-SINKTIERYQK 71 (160)
Q Consensus 42 ~v~~iv~s~~g--k~~~~~s~-~~~~il~RY~~ 71 (160)
.+-|+|++.+| +++.++.+ ....++.+|..
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~T 40 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCT 40 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccC
Confidence 46688888877 56666554 78888888864
No 80
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=34.78 E-value=35 Score=24.55 Aligned_cols=23 Identities=26% Similarity=0.689 Sum_probs=17.7
Q ss_pred cccCcceeeeeecCCCCccc-ccc
Q 031392 37 VLCDAEVALIIFSPRGKLYE-FSS 59 (160)
Q Consensus 37 ~LC~~~v~~iv~s~~gk~~~-~~s 59 (160)
.-|++.|-+++|||.-+.|. |..
T Consensus 109 p~c~iKvL~LlYs~kk~~flG~IP 132 (152)
T PF11232_consen 109 PPCEIKVLMLLYSPKKKAFLGFIP 132 (152)
T ss_dssp SSSS-SEEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEEEEcCCCceEEEEcC
Confidence 57999999999999888664 544
No 81
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=34.74 E-value=91 Score=18.61 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=22.0
Q ss_pred hhhhhHHHHHHhhhhhHHHHHHHHHHHh
Q 031392 84 EDHSQHAKEETSNMMTKLEFLEVAKRKL 111 (160)
Q Consensus 84 ~~~~e~l~~e~~kl~~~~~~l~~~~r~~ 111 (160)
.+.++.|+.++..|..++..++.++..+
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788999999999998888877543
No 82
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=34.71 E-value=33 Score=27.68 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=20.1
Q ss_pred hcccCcceeeeeecCC--CCccc-cccc
Q 031392 36 SVLCDAEVALIIFSPR--GKLYE-FSSC 60 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~--gk~~~-~~s~ 60 (160)
+++-|..+|++.|+++ ||.|+ |+.+
T Consensus 82 ~~~~G~n~~i~ayGqtGSGKTyTm~G~~ 109 (338)
T cd01370 82 GVLNGYNATVFAYGATGAGKTHTMLGTD 109 (338)
T ss_pred HHHCCCCceEEeeCCCCCCCeEEEcCCC
Confidence 5688999999999975 58887 5654
No 83
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=34.60 E-value=29 Score=26.95 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=22.9
Q ss_pred hhhhcccCcceeeeeecCCCCccccccc
Q 031392 33 FELSVLCDAEVALIIFSPRGKLYEFSSC 60 (160)
Q Consensus 33 ~ELs~LC~~~v~~iv~s~~gk~~~~~s~ 60 (160)
.+|.-.+|++|+|||+.+.|+++--+.+
T Consensus 133 ~~l~~~~g~~v~VIItDt~gr~~R~G~~ 160 (243)
T TIGR01916 133 RGLRELTGVDVGVIITDTNGRPFREGQV 160 (243)
T ss_pred HHHHHHHCCCEEEEEECCCCCccccCCC
Confidence 3556678999999999999998876665
No 84
>PF13252 DUF4043: Protein of unknown function (DUF4043)
Probab=34.25 E-value=21 Score=29.13 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=20.3
Q ss_pred hhhhhcccCcceeeeeecC--CCCccccc
Q 031392 32 AFELSVLCDAEVALIIFSP--RGKLYEFS 58 (160)
Q Consensus 32 a~ELs~LC~~~v~~iv~s~--~gk~~~~~ 58 (160)
+-.-++|||+.++++.|+. +|-.|.|.
T Consensus 271 ~v~ralLlGaQA~~~A~G~~~~~~~~~w~ 299 (341)
T PF13252_consen 271 AVARALLLGAQALVIAFGKSGSGMRFFWV 299 (341)
T ss_pred ceeeeeeechhheeeeeeccCCCcccccc
Confidence 4455789999999999997 44555554
No 85
>KOG3718 consensus Carnitine O-acyltransferase CROT [Lipid transport and metabolism]
Probab=34.22 E-value=90 Score=26.93 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=23.3
Q ss_pred ecCCCCcccccccchhhHHHHhhhccccc
Q 031392 48 FSPRGKLYEFSSCSINKTIERYQKKTKDI 76 (160)
Q Consensus 48 ~s~~gk~~~~~s~~~~~il~RY~~~~~~~ 76 (160)
||-.+.+++-|=|++++.|++|.....+-
T Consensus 14 Fs~qdsLPSLPlPeLeETleKYl~s~~pf 42 (609)
T KOG3718|consen 14 FSFQDSLPSLPLPELEETLEKYLSSIQPF 42 (609)
T ss_pred ccccccCCCCCCchHHHHHHHHHHhcccC
Confidence 66667788888899999999999865543
No 86
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=34.21 E-value=8.3 Score=22.39 Aligned_cols=30 Identities=23% Similarity=0.496 Sum_probs=19.4
Q ss_pred eeeeeecCCCCcccccccchhhHHHHhhhccc
Q 031392 43 VALIIFSPRGKLYEFSSCSINKTIERYQKKTK 74 (160)
Q Consensus 43 v~~iv~s~~gk~~~~~s~~~~~il~RY~~~~~ 74 (160)
|++|+|+| +++++.+.. +-.-+..|++...
T Consensus 14 i~llvFGp-~KLP~l~r~-lG~~i~~Fk~~~~ 43 (51)
T PRK01470 14 IIFVLFGA-GKLPQVMSD-LAKGLKAFKDGMK 43 (51)
T ss_pred HHHHhcCc-hHhHHHHHH-HHHHHHHHHHHhc
Confidence 78899998 467655443 4556666766443
No 87
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=33.48 E-value=19 Score=27.85 Aligned_cols=40 Identities=30% Similarity=0.492 Sum_probs=27.8
Q ss_pred cccccccchhhhhhhhhcccCcceee---eeecCCCCccccccc
Q 031392 20 TFSKRRNGLLKKAFELSVLCDAEVAL---IIFSPRGKLYEFSSC 60 (160)
Q Consensus 20 tf~kR~~gl~KKa~ELs~LC~~~v~~---iv~s~~gk~~~~~s~ 60 (160)
-|.+-+.|++||.. +..||+.+-++ |.||+.++..-|+..
T Consensus 119 ~~~~~~~~~~~~~~-~~~L~~~~~~l~~~v~fS~~~r~IGFSkD 161 (269)
T PRK09822 119 FYRREKGGFLKKIK-FNILKRVHKALLISVPLSKRGRLAGFCKD 161 (269)
T ss_pred hhhhccCchhhhhH-HHHHhhhhhhhEEEeeccccCCceeeeec
Confidence 34455788888874 77888766544 668888887777654
No 88
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=33.25 E-value=38 Score=27.01 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=19.9
Q ss_pred hcccCcceeeeeecCC--CCccc-cccc
Q 031392 36 SVLCDAEVALIIFSPR--GKLYE-FSSC 60 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~--gk~~~-~~s~ 60 (160)
+++-|.++|+++|+++ ||.|+ |+.+
T Consensus 75 ~~~~G~n~~i~ayG~tgSGKTyTm~G~~ 102 (319)
T cd01376 75 HLLSGQNATVFAYGSTGAGKTHTMLGDP 102 (319)
T ss_pred HHhCCCceEEEEECCCCCCCcEEEeCCc
Confidence 5778999999999975 58887 5543
No 89
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.19 E-value=1.5e+02 Score=19.69 Aligned_cols=14 Identities=7% Similarity=0.204 Sum_probs=9.0
Q ss_pred ccchhhHHHHhhhc
Q 031392 59 SCSINKTIERYQKK 72 (160)
Q Consensus 59 s~~~~~il~RY~~~ 72 (160)
+|.+..++..|...
T Consensus 2 ~~~~q~~~~~~q~~ 15 (110)
T TIGR02338 2 PPQVQNQLAQLQQL 15 (110)
T ss_pred CHHHHHHHHHHHHH
Confidence 35667777777654
No 90
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=33.08 E-value=1.6e+02 Score=19.99 Aligned_cols=41 Identities=24% Similarity=0.241 Sum_probs=19.9
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH
Q 031392 88 QHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLE 132 (160)
Q Consensus 88 e~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~~eL~~Le~~Le 132 (160)
+-|+.++..|.+++..++++++-+. .-.|.++|.+|..++.
T Consensus 70 e~Lk~qI~eL~er~~~Le~EN~lLk----~~~spe~L~ql~~~~~ 110 (123)
T KOG4797|consen 70 EVLKEQIRELEERNSALERENSLLK----TLASPEQLAQLPAQLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----hhCCHHHHHHHHHhcc
Confidence 3344444444444444444433221 2346777777765543
No 91
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.95 E-value=2.1e+02 Score=21.50 Aligned_cols=19 Identities=11% Similarity=0.267 Sum_probs=10.1
Q ss_pred hhHHHHHHhhhhhHHHHHH
Q 031392 87 SQHAKEETSNMMTKLEFLE 105 (160)
Q Consensus 87 ~e~l~~e~~kl~~~~~~l~ 105 (160)
+..++.++..++.++..+.
T Consensus 95 lp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444
No 92
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=32.80 E-value=37 Score=27.09 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=19.5
Q ss_pred hcccCcceeeeeecCC--CCccc-ccc
Q 031392 36 SVLCDAEVALIIFSPR--GKLYE-FSS 59 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~--gk~~~-~~s 59 (160)
+++-|.++|++.|+++ ||.|+ |+.
T Consensus 72 ~~~~G~~~~i~ayG~tgSGKT~tl~G~ 98 (329)
T cd01366 72 SALDGYNVCIFAYGQTGSGKTYTMEGP 98 (329)
T ss_pred HHhCCCceEEEEeCCCCCCCcEEecCC
Confidence 5678999999999975 68887 555
No 93
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=32.53 E-value=2.3e+02 Score=21.75 Aligned_cols=33 Identities=33% Similarity=0.654 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKV 157 (160)
Q Consensus 120 s~~eL~~Le~~Le~~l~~Vr~RK~~ll~~~~~~l~~k~ 157 (160)
+++|+..+|..|. .|+...+++ ..++..|..++
T Consensus 160 ~~~d~l~ie~~L~----~v~~eIe~~-~~~~~~l~~~v 192 (262)
T PF14257_consen 160 TVEDLLEIERELS----RVRSEIEQL-EGQLKYLDDRV 192 (262)
T ss_pred CHHHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHhh
Confidence 8899988887766 455555444 44445555544
No 94
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=32.33 E-value=33 Score=21.24 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=17.6
Q ss_pred cCcceeeeeecCCCCccccccc-chhhHHHHh
Q 031392 39 CDAEVALIIFSPRGKLYEFSSC-SINKTIERY 69 (160)
Q Consensus 39 C~~~v~~iv~s~~gk~~~~~s~-~~~~il~RY 69 (160)
|+--.+++| +|..|...+| .+.+|++.|
T Consensus 52 C~~gP~v~v---~g~~y~~vt~~~i~~i~~~~ 80 (80)
T cd03064 52 CDLAPVMMI---NDDVYGRLTPEKVDAILEAL 80 (80)
T ss_pred CCCCCEEEE---CCEEECCCCHHHHHHHHHhC
Confidence 655555555 3667776666 677777654
No 95
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=32.28 E-value=1.4e+02 Score=20.62 Aligned_cols=22 Identities=27% Similarity=0.181 Sum_probs=17.3
Q ss_pred cccccccccchhhhhhhhhccc
Q 031392 18 QVTFSKRRNGLLKKAFELSVLC 39 (160)
Q Consensus 18 ~~tf~kR~~gl~KKa~ELs~LC 39 (160)
-.+++|+|..++++-.+-.+-|
T Consensus 4 ~~~~rk~R~~~y~~lgl~~vkC 25 (120)
T PF04521_consen 4 FRCVRKYRASVYKKLGLSAVKC 25 (120)
T ss_pred hHHHHHHHHHHHHHcCCeeeee
Confidence 4578999999999987766644
No 96
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=32.22 E-value=69 Score=22.15 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 121 IDELQQLENQLERSLSRIRARKNQ 144 (160)
Q Consensus 121 ~~eL~~Le~~Le~~l~~Vr~RK~~ 144 (160)
+.||..||..+.+.++.|++.-+.
T Consensus 101 L~dL~HLE~Vv~~KIaEIe~dlek 124 (125)
T PF11944_consen 101 LDDLRHLEKVVNSKIAEIERDLEK 124 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 679999999999999999987654
No 97
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=32.07 E-value=1e+02 Score=24.36 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=28.8
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 110 KLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFR 147 (160)
Q Consensus 110 ~~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~ 147 (160)
+..-+.+.+|+++||.+|-..|-..+..|-+--.+.+.
T Consensus 210 ~~SrEeL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~~vQ 247 (285)
T PF06937_consen 210 HYSREELNSMTLDELKQLNEKLLQQIQDVFEELTQQVQ 247 (285)
T ss_pred ccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788999999999999888877777665555543
No 98
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=32.06 E-value=37 Score=27.15 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=20.2
Q ss_pred hcccCcceeeeeecCC--CCccc-cccc
Q 031392 36 SVLCDAEVALIIFSPR--GKLYE-FSSC 60 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~--gk~~~-~~s~ 60 (160)
+++.|..+|++.|+++ ||.|+ |+++
T Consensus 79 ~~~~G~n~~i~ayGqtGSGKTyTm~G~~ 106 (322)
T cd01367 79 HVFEGGVATCFAYGQTGSGKTYTMLGDE 106 (322)
T ss_pred HHhCCCceEEEeccCCCCCCceEecCcC
Confidence 5788999999999975 58887 6553
No 99
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=32.04 E-value=84 Score=25.04 Aligned_cols=34 Identities=6% Similarity=0.049 Sum_probs=27.6
Q ss_pred hhhHHHHHHhhhhhHHHHHHHHHHHhhCCCCCCC
Q 031392 86 HSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPC 119 (160)
Q Consensus 86 ~~e~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~L 119 (160)
.+..|+.++..|.+++..++..+..+||.+-++-
T Consensus 153 ~I~~L~~qisaLdkqi~ai~Kkid~yWgkda~gk 186 (308)
T PF06717_consen 153 KIPGLNKQISALDKQIVAINKKIDRYWGKDANGK 186 (308)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 3566888888888999888888888999877653
No 100
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=31.95 E-value=43 Score=26.77 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=19.5
Q ss_pred hcccCcceeeeeecCC--CCccc-cccc
Q 031392 36 SVLCDAEVALIIFSPR--GKLYE-FSSC 60 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~--gk~~~-~~s~ 60 (160)
+++-|.++|+++|+++ ||.|+ |+++
T Consensus 74 ~~~~G~~~~i~~yG~tgSGKT~tl~G~~ 101 (335)
T smart00129 74 SVLEGYNATIFAYGQTGSGKTYTMSGTP 101 (335)
T ss_pred HHhcCCceeEEEeCCCCCCCceEecCCC
Confidence 3688999999999975 58877 6553
No 101
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair]
Probab=31.84 E-value=1.3e+02 Score=26.62 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=30.9
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCHHHHHHH
Q 031392 87 SQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQL 127 (160)
Q Consensus 87 ~e~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~~eL~~L 127 (160)
.+.|......+..++..++.+...+-|++++--|++||..+
T Consensus 213 ~~~L~~l~~el~~~l~~le~eiy~laG~~FNi~SPKQL~~I 253 (593)
T COG0749 213 VQYLKELSKELGCELAELEEEIYELAGEEFNINSPKQLGEI 253 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHHHH
Confidence 45566666667777788888888888888888888888764
No 102
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=31.79 E-value=2.1e+02 Score=21.12 Aligned_cols=62 Identities=21% Similarity=0.329 Sum_probs=32.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 89 HAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEK 152 (160)
Q Consensus 89 ~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~~~~~~ 152 (160)
.++.++..|+++....+..+..+ -......+.+|-.+.+..-+...+.-|.|+. ++.+=++.
T Consensus 120 emQe~i~~L~kev~~~~erl~~~-k~g~~~vtpedk~~v~~~y~~~~~~wrk~kr-mf~ei~d~ 181 (201)
T KOG4603|consen 120 EMQEEIQELKKEVAGYRERLKNI-KAGTNHVTPEDKEQVYREYQKYCKEWRKRKR-MFREIIDK 181 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhcccCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34444444444444333332222 1344556677777777777777777776665 44444433
No 103
>PRK14622 hypothetical protein; Provisional
Probab=30.98 E-value=1.6e+02 Score=19.52 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLK 154 (160)
Q Consensus 118 ~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~~~~~~l~ 154 (160)
-+..+|..-|+..|-.+++....+..++..+.+..+.
T Consensus 57 ~l~~ed~e~LeDLI~aA~N~A~~k~~~~~~~~m~~~t 93 (103)
T PRK14622 57 AVDPNDKAMLEDLVTAAVNAAVEKARTAADESMSKAT 93 (103)
T ss_pred HcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556777788888888888888888877777666543
No 104
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=30.96 E-value=21 Score=17.90 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=15.9
Q ss_pred hcccCcceeeeeecCCCCccccccc
Q 031392 36 SVLCDAEVALIIFSPRGKLYEFSSC 60 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~gk~~~~~s~ 60 (160)
+|-||..-.+++.+ +|.+|.|++.
T Consensus 3 ~ia~G~~ht~al~~-~g~v~~wG~n 26 (30)
T PF13540_consen 3 QIACGGYHTCALTS-DGEVYCWGDN 26 (30)
T ss_dssp EEEEESSEEEEEE--TTEEEEEE--
T ss_pred EEEecCCEEEEEEc-CCCEEEEcCC
Confidence 45677777777665 5889999875
No 105
>PRK14626 hypothetical protein; Provisional
Probab=30.89 E-value=1.7e+02 Score=19.70 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=40.4
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHh---------------hCC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 88 QHAKEETSNMMTKLEFLEVAKRKL---------------LGD--------GLEPCTIDELQQLENQLERSLSRIRARKNQ 144 (160)
Q Consensus 88 e~l~~e~~kl~~~~~~l~~~~r~~---------------~g~--------~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ 144 (160)
..+-.+..+++++++.++.++... .|. +-+-++.+|..-|+..|-.+.+..-++-.+
T Consensus 8 ~~mmkqaq~mQ~km~~~qeeL~~~~v~g~sggG~VkV~~nG~~ev~~i~Id~~ll~~ed~e~LeDLI~aA~N~A~~k~~~ 87 (110)
T PRK14626 8 AELMKQMQSIKENVEKAKEELKKEEIVVEVGGGMVKVVSNGLGEIKDVEIDKSLLNEDEYEVLKDLLIAAFNEASRRSKE 87 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccEEEEEecCcEEEEEEECCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666665542 121 122356667777888888888888777777
Q ss_pred HHHHHHHHH
Q 031392 145 LFREQIEKL 153 (160)
Q Consensus 145 ll~~~~~~l 153 (160)
...+.+..+
T Consensus 88 ~~~e~m~~~ 96 (110)
T PRK14626 88 VMGEKMTQA 96 (110)
T ss_pred HHHHHHHHH
Confidence 766666543
No 106
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=30.64 E-value=1.1e+02 Score=18.70 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 121 IDELQQLENQLERSLSRIRARKNQL 145 (160)
Q Consensus 121 ~~eL~~Le~~Le~~l~~Vr~RK~~l 145 (160)
..|+..++..|......+.+||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688888888888888888888764
No 107
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=30.44 E-value=31 Score=28.76 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=39.2
Q ss_pred eeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCccccccc
Q 031392 8 MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60 (160)
Q Consensus 8 i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~ 60 (160)
|+.+.+...-..||.+++.| |++.+|+..+-+.+|....-...|+++
T Consensus 18 i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~ 64 (412)
T COG5068 18 IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNE 64 (412)
T ss_pred cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCc
Confidence 67777888888999999999 999999998888888766666677765
No 108
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=30.31 E-value=45 Score=26.59 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=19.7
Q ss_pred hcccCcceeeeeecCC--CCccc-cccc
Q 031392 36 SVLCDAEVALIIFSPR--GKLYE-FSSC 60 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~--gk~~~-~~s~ 60 (160)
.++-|.++|++.|+++ ||.|+ |+++
T Consensus 68 ~~l~G~n~~i~ayG~tgSGKT~T~~G~~ 95 (321)
T cd01374 68 SALEGYNGTIFAYGQTSSGKTFTMSGDE 95 (321)
T ss_pred HHHCCCceeEEeecCCCCCCceeccCCC
Confidence 4678999999999975 68887 5543
No 109
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=30.12 E-value=2.2e+02 Score=20.73 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 119 CTIDELQQLENQLERSLSRIRARKNQL 145 (160)
Q Consensus 119 Ls~~eL~~Le~~Le~~l~~Vr~RK~~l 145 (160)
.+.+++.++...++..|+.|++....+
T Consensus 135 v~~~~i~e~IKd~de~L~~I~d~iK~I 161 (163)
T PF03233_consen 135 VTEKLIEELIKDFDERLKEIRDKIKKI 161 (163)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466789999999999999999876554
No 110
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=29.93 E-value=1.9e+02 Score=20.02 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031392 122 DELQQLENQLERSLSRIRARK 142 (160)
Q Consensus 122 ~eL~~Le~~Le~~l~~Vr~RK 142 (160)
++-.+|-..-+..++.+..-.
T Consensus 89 ~eYk~llk~y~~~~~~L~k~I 109 (126)
T PF09403_consen 89 DEYKELLKKYKDLLNKLDKEI 109 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555565555555555443
No 111
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=29.52 E-value=1.1e+02 Score=16.87 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031392 99 TKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRI 138 (160)
Q Consensus 99 ~~~~~l~~~~r~~~g~~l~~Ls~~eL~~Le~~Le~~l~~V 138 (160)
.+|+.++..+..+.... +++-.+...+.+.||..+...
T Consensus 4 ~~Ie~~R~~L~~~~~~~--~l~~~~vl~~Sq~LD~lI~~y 41 (45)
T PF09388_consen 4 EEIEELRQELNELAEKK--GLTDPEVLELSQELDKLINEY 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHC--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHH
Confidence 34444444433333222 667778888888888877654
No 112
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=29.21 E-value=1.1e+02 Score=17.63 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=9.5
Q ss_pred CCCCCHHHHHHHHHHHH
Q 031392 116 LEPCTIDELQQLENQLE 132 (160)
Q Consensus 116 l~~Ls~~eL~~Le~~Le 132 (160)
+..+|.+||+..-..|+
T Consensus 5 Lk~ls~~eL~~rl~~LD 21 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLD 21 (49)
T ss_dssp GGGS-HHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCC
Confidence 45677777776444443
No 113
>PRK00708 sec-independent translocase; Provisional
Probab=29.19 E-value=63 Score=24.50 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=18.4
Q ss_pred hhhcccCcceeeeeecCCCCcccccccchhhHHHHhhhc
Q 031392 34 ELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKK 72 (160)
Q Consensus 34 ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~ 72 (160)
||-++. =|+||||+|.. ++...- .+...+.++.++
T Consensus 8 ELlvI~--vVaLvV~GPkr-LP~~~R-~lGk~v~k~R~~ 42 (209)
T PRK00708 8 ELLVIA--IVLIVVVGPKD-LPPMLR-AFGKMTARMRKM 42 (209)
T ss_pred HHHHHH--HHHHhhcCchH-HHHHHH-HHHHHHHHHHHH
Confidence 554443 37889999954 333211 244444455443
No 114
>PTZ00370 STEVOR; Provisional
Probab=28.51 E-value=2.1e+02 Score=22.92 Aligned_cols=42 Identities=21% Similarity=0.468 Sum_probs=26.4
Q ss_pred eeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccc-cchhhHHHHhhh
Q 031392 8 MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS-CSINKTIERYQK 71 (160)
Q Consensus 8 i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s-~~~~~il~RY~~ 71 (160)
+..|.|.+.|. |.+-| .||..|. |+| .|-+ |.|++|++.|..
T Consensus 26 ~~li~n~t~~~-t~~sR------------~L~Ecel----~~p-----~YdNDpemK~i~d~~n~ 68 (296)
T PTZ00370 26 VSLIQNNTQRT-TIKSR------------LLAQTQN----HNP-----HYHNDPELKEIIDKMNE 68 (296)
T ss_pred cccccCCCccc-cccee------------ehhhhhc----CCC-----CCCCcHHHHHHHHHHhH
Confidence 45677777755 33222 4676654 444 3433 799999999865
No 115
>PRK09458 pspB phage shock protein B; Provisional
Probab=28.34 E-value=1.6e+02 Score=18.54 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=18.1
Q ss_pred hhhhhHHHHHHhhhhhHHHHHHHH
Q 031392 84 EDHSQHAKEETSNMMTKLEFLEVA 107 (160)
Q Consensus 84 ~~~~e~l~~e~~kl~~~~~~l~~~ 107 (160)
.+.++.+-....+++++++.+|.-
T Consensus 41 ~~~L~~L~~~A~rm~~RI~tLE~I 64 (75)
T PRK09458 41 QQRLAQLTEKAERMRERIQALEAI 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888889998888854
No 116
>PF12165 DUF3594: Domain of unknown function (DUF3594); InterPro: IPR021998 This presumed domain is functionally uncharacterised.This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00628 from PFAM.
Probab=27.81 E-value=34 Score=23.83 Aligned_cols=33 Identities=36% Similarity=0.701 Sum_probs=23.0
Q ss_pred cccccccchhhhh----hhhhcccCcce-eeeeec-CCC
Q 031392 20 TFSKRRNGLLKKA----FELSVLCDAEV-ALIIFS-PRG 52 (160)
Q Consensus 20 tf~kR~~gl~KKa----~ELs~LC~~~v-~~iv~s-~~g 52 (160)
-|+-||.||++-. .|+.-+||-+- .+-.|+ |+|
T Consensus 9 df~~RR~g~v~ALT~dve~Fy~~CDP~kenLCLYG~p~~ 47 (137)
T PF12165_consen 9 DFSGRRAGIVRALTTDVEEFYQQCDPEKENLCLYGHPDG 47 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccceEEecCCCC
Confidence 4889999998865 67889998655 333344 444
No 117
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=27.63 E-value=58 Score=18.35 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=18.3
Q ss_pred eeecCCCCccccccc-chhhHHHHh
Q 031392 46 IIFSPRGKLYEFSSC-SINKTIERY 69 (160)
Q Consensus 46 iv~s~~gk~~~~~s~-~~~~il~RY 69 (160)
.||-|+|..++|+.+ ++.+++...
T Consensus 2 ~~~~~~g~~~~~~~~~t~~~~~~~~ 26 (60)
T cd01668 2 YVFTPKGEIIELPAGATVLDFAYAI 26 (60)
T ss_pred EEECCCCCEEEcCCCCCHHHHHHHH
Confidence 578899999888875 677776643
No 118
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=27.62 E-value=1.7e+02 Score=18.81 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=5.3
Q ss_pred CCHHHHHHHHH
Q 031392 119 CTIDELQQLEN 129 (160)
Q Consensus 119 Ls~~eL~~Le~ 129 (160)
++++|+..+-.
T Consensus 58 ~~l~eI~~~l~ 68 (96)
T cd04788 58 FSLREIGRALD 68 (96)
T ss_pred CCHHHHHHHHh
Confidence 45555554433
No 119
>PRK06851 hypothetical protein; Provisional
Probab=27.60 E-value=1.6e+02 Score=24.26 Aligned_cols=28 Identities=21% Similarity=0.133 Sum_probs=20.7
Q ss_pred cccchhhhhhhhhcccCcceeeeeecCC
Q 031392 24 RRNGLLKKAFELSVLCDAEVALIIFSPR 51 (160)
Q Consensus 24 R~~gl~KKa~ELs~LC~~~v~~iv~s~~ 51 (160)
.|..|++++.+-..-+|-+|..+.++++
T Consensus 42 GKStl~~~i~~~~~~~g~~Ve~~~~~~d 69 (367)
T PRK06851 42 GKSTLMKKIGEEFLEKGYDVEFLHCSSD 69 (367)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 4566888877766667888888877753
No 120
>PLN03194 putative disease resistance protein; Provisional
Probab=27.38 E-value=35 Score=25.42 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=22.4
Q ss_pred cCcceeeeeecCCCCcccccccchhhHHHH
Q 031392 39 CDAEVALIIFSPRGKLYEFSSCSINKTIER 68 (160)
Q Consensus 39 C~~~v~~iv~s~~gk~~~~~s~~~~~il~R 68 (160)
=.+.++|+||||+=--..||-..+..|++.
T Consensus 79 eeSri~IvVfS~~Ya~S~WCLdEL~~I~e~ 108 (187)
T PLN03194 79 RNCKVGVAVFSPRYCESYFCLHELALIMES 108 (187)
T ss_pred HhCeEEEEEECCCcccchhHHHHHHHHHHc
Confidence 467899999999655556777777777764
No 121
>PRK14624 hypothetical protein; Provisional
Probab=27.36 E-value=2.1e+02 Score=19.54 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=43.0
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHh---------------hCC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 87 SQHAKEETSNMMTKLEFLEVAKRKL---------------LGD--------GLEPCTIDELQQLENQLERSLSRIRARKN 143 (160)
Q Consensus 87 ~e~l~~e~~kl~~~~~~l~~~~r~~---------------~g~--------~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~ 143 (160)
...+-.+..+++++++.++.++... .|. +.+-+..+|..-|+..|-.+.+..-.+-.
T Consensus 8 m~~~mkqAq~mQ~km~~~QeeL~~~~v~g~sGgG~VkV~~nG~~~i~~i~Idp~lld~eD~E~LeDLI~aAvNdA~~k~~ 87 (115)
T PRK14624 8 MSEALSNMGNIREKMEEVKKRIASIRVVGDAGAGMVTVTATGEGQITNVFINKQLFDADDNKMLEDLVMAATNDALKKAK 87 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCcEEEEEEEcCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666777777777666541 221 12235667777788888888888888777
Q ss_pred HHHHHHHHHH
Q 031392 144 QLFREQIEKL 153 (160)
Q Consensus 144 ~ll~~~~~~l 153 (160)
+...+++..+
T Consensus 88 e~~~e~m~~~ 97 (115)
T PRK14624 88 EATAYEFQNA 97 (115)
T ss_pred HHHHHHHHHH
Confidence 7766666554
No 122
>COG1438 ArgR Arginine repressor [Transcription]
Probab=27.17 E-value=34 Score=24.53 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=15.3
Q ss_pred hhhhcccCcceeeeeecCC
Q 031392 33 FELSVLCDAEVALIIFSPR 51 (160)
Q Consensus 33 ~ELs~LC~~~v~~iv~s~~ 51 (160)
.=|+|+||.|.++|++-..
T Consensus 118 eIlGTIaGdDTilVi~r~~ 136 (150)
T COG1438 118 EILGTIAGDDTILVICRSE 136 (150)
T ss_pred hhheeeeCCCeEEEEecCc
Confidence 4479999999999988543
No 123
>PF04417 DUF501: Protein of unknown function (DUF501); InterPro: IPR007511 This is a family of uncharacterised bacterial proteins.
Probab=27.09 E-value=1.8e+02 Score=20.50 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=22.2
Q ss_pred cCcceeeeeec--CCCCccc---ccc-cchhhHHHHhhhc
Q 031392 39 CDAEVALIIFS--PRGKLYE---FSS-CSINKTIERYQKK 72 (160)
Q Consensus 39 C~~~v~~iv~s--~~gk~~~---~~s-~~~~~il~RY~~~ 72 (160)
||....+.++. ++|+||. |-+ |.+...++|....
T Consensus 7 ~G~P~Vi~~~P~l~~g~PFPTlfwLtcP~L~~~isrLE~~ 46 (139)
T PF04417_consen 7 CGFPQVIRTAPRLVDGKPFPTLFWLTCPYLVKAISRLEAE 46 (139)
T ss_pred CCCCeEEEeccCCCCCccCCccHhhcCHHHHHHHHHHHhc
Confidence 56666666664 6787763 444 7777778877653
No 124
>PF06020 Roughex: Drosophila roughex protein; InterPro: IPR009259 This family consists of several roughex (RUX) proteins specific to Drosophila species. Roughex can influence the intracellular distribution of cyclin A and is therefore defined as a distinct and specialised cell cycle inhibitor for cyclin A-dependent kinase activity []. Rux is though to regulate the metaphase to anaphase transition during development [].
Probab=27.06 E-value=29 Score=27.65 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=13.2
Q ss_pred hcccCcceeeeeecCC
Q 031392 36 SVLCDAEVALIIFSPR 51 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~ 51 (160)
.-+||++|||+||--.
T Consensus 183 ~~~~~~EICLavYek~ 198 (334)
T PF06020_consen 183 GQVSGFEICLAVYEKG 198 (334)
T ss_pred CccccceEEeeehhhh
Confidence 4579999999999753
No 125
>PRK11239 hypothetical protein; Provisional
Probab=26.92 E-value=1.1e+02 Score=23.20 Aligned_cols=55 Identities=22% Similarity=0.431 Sum_probs=37.7
Q ss_pred CCCccccccccccc-----hhhhhhhhhcccCcceeeeeecC---------CCCcccccc-cchhhHHHHhhhc
Q 031392 14 ATSRQVTFSKRRNG-----LLKKAFELSVLCDAEVALIIFSP---------RGKLYEFSS-CSINKTIERYQKK 72 (160)
Q Consensus 14 ~~~R~~tf~kR~~g-----l~KKa~ELs~LC~~~v~~iv~s~---------~gk~~~~~s-~~~~~il~RY~~~ 72 (160)
..+|-+-|.-|-.. |--=..|++++| .++.-+| ++++|.|++ .+++.+|++....
T Consensus 74 ~gsRv~Ky~Hr~~~~ef~~l~l~~~~~All~----~LlLRGPQT~gELRtRs~Rl~~F~dv~~Ve~~L~~L~~r 143 (215)
T PRK11239 74 FGNRVTKYEQRFCNSEFGDLKLSAAEVALIT----TLLLRGAQTPGELRSRAARMYEFSDMAEVESTLEQLANR 143 (215)
T ss_pred CCcchHHHHHhcccccccccCCCHHHHHHHH----HHHhcCCCChHHHHHhHhcCCcCCCHHHHHHHHHHHHhc
Confidence 35666667666542 434456777877 3555666 478999998 5899998888765
No 126
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=26.90 E-value=4.2e+02 Score=22.94 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=27.0
Q ss_pred CCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 116 LEPCTI-DELQQLENQLERSLSRIRARKNQLFREQIEKLKE 155 (160)
Q Consensus 116 l~~Ls~-~eL~~Le~~Le~~l~~Vr~RK~~ll~~~~~~l~~ 155 (160)
+.+-++ .||..+-..|-..+..|.+-... +...++.++.
T Consensus 170 I~G~nir~ELl~l~~~LP~~~~~i~~~i~~-l~~aie~Y~~ 209 (507)
T PF05600_consen 170 IKGENIREELLELVKELPSLFDEIVEAISD-LQEAIEYYQA 209 (507)
T ss_pred CccchhHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 333344 48888888888888888777755 6777777664
No 127
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=26.76 E-value=34 Score=18.96 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=15.3
Q ss_pred cCcce---eeeeecCCCCcccccccch
Q 031392 39 CDAEV---ALIIFSPRGKLYEFSSCSI 62 (160)
Q Consensus 39 C~~~v---~~iv~s~~gk~~~~~s~~~ 62 (160)
||..| +-.-..=+|+.|.|+|+.-
T Consensus 6 cg~~v~~~~~~~~~y~G~~Y~FCS~~C 32 (47)
T PF04945_consen 6 CGMKVPGNAAYSVEYNGRTYYFCSEGC 32 (47)
T ss_dssp GG-BE-----EEEEETTEEEEESSHHH
T ss_pred CCCEEccCccEEEEECCEEEEEcCHHH
Confidence 66666 4455556899999999743
No 128
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=26.67 E-value=90 Score=22.91 Aligned_cols=21 Identities=14% Similarity=0.083 Sum_probs=12.7
Q ss_pred hhHHHHHHhhhhhHHHHHHHH
Q 031392 87 SQHAKEETSNMMTKLEFLEVA 107 (160)
Q Consensus 87 ~e~l~~e~~kl~~~~~~l~~~ 107 (160)
.+.|..++.+++++.+.-+..
T Consensus 64 ~~el~~eiekvkke~Eekq~~ 84 (182)
T PF08432_consen 64 KKELEEEIEKVKKEYEEKQKW 84 (182)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 345677777776666555443
No 129
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=26.57 E-value=2.7e+02 Score=20.61 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=37.2
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHhhCC--CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 87 SQHAKEETSNMMTKLEFLEVAKRKLLGD--GL-EPCTIDELQQLENQLERSLSRIRARKNQL 145 (160)
Q Consensus 87 ~e~l~~e~~kl~~~~~~l~~~~r~~~g~--~l-~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~l 145 (160)
.+.|..++..|.++...++...+.+..+ .| ..|++++++.=...|..-.+.-++|...+
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666655555554443221 11 35899999998888888877777776554
No 130
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=26.46 E-value=58 Score=29.02 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=38.6
Q ss_pred cchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHHhhhccc
Q 031392 26 NGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTK 74 (160)
Q Consensus 26 ~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~~~ 74 (160)
.+++++|.||++=--+.+.++=||... |+..+.|.|...|.-|.+-+.
T Consensus 446 ~e~i~t~~elTvgDtsp~~L~EySEe~-P~~Lsn~GMas~l~nYYRK~N 493 (968)
T COG5179 446 QEIIKTAGELTVGDTSPFSLFEYSEEE-PFFLSNPGMASLLNNYYRKSN 493 (968)
T ss_pred hhhhccccceeccCCCceeeeeecccC-ceeecCchHHHHHHHHHHhcc
Confidence 689999999999998999999999754 555566888888777776543
No 131
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=26.38 E-value=67 Score=23.70 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=34.0
Q ss_pred ccccchhhhhhhhhcccCcceeeeeecCCC----Ccccccc-cchhhHHHHhhhcccc
Q 031392 23 KRRNGLLKKAFELSVLCDAEVALIIFSPRG----KLYEFSS-CSINKTIERYQKKTKD 75 (160)
Q Consensus 23 kR~~gl~KKa~ELs~LC~~~v~~iv~s~~g----k~~~~~s-~~~~~il~RY~~~~~~ 75 (160)
=|..-++++..++...|..=...|.-.|.. .-|.+-+ |++.+++++|......
T Consensus 94 i~~~~~~~~~~~~~~~~~~I~~~v~~~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~~ 151 (199)
T PF10112_consen 94 IRDLEMIEKVSRIEKIARRIFKYVEKDPERLTQARKFLYYYLPTAVKLLEKYAELESQ 151 (199)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHCHHhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 344456777777777777666666666643 1222223 7889999999887553
No 132
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=26.13 E-value=49 Score=25.72 Aligned_cols=28 Identities=21% Similarity=0.263 Sum_probs=22.4
Q ss_pred hhhhcccCcceeeeeecCCCCccccccc
Q 031392 33 FELSVLCDAEVALIIFSPRGKLYEFSSC 60 (160)
Q Consensus 33 ~ELs~LC~~~v~~iv~s~~gk~~~~~s~ 60 (160)
.+|.-.||++|+|||....|+++-.+..
T Consensus 134 ~~l~~~~g~~v~VIItDt~gr~~R~G~t 161 (245)
T PRK13293 134 EGLEELTGKKVGVIITDTNGRPFRKGQR 161 (245)
T ss_pred HHHHHHHCCCEEEEEEcCCCcccccCCc
Confidence 3456678999999999999988776654
No 133
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=26.01 E-value=26 Score=20.43 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=26.6
Q ss_pred ccceeeecCCCCccccccccccchhhhhhhhh--cccC
Q 031392 5 KTQMKRIENATSRQVTFSKRRNGLLKKAFELS--VLCD 40 (160)
Q Consensus 5 ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs--~LC~ 40 (160)
|-.+--|..+....-|||--+--.-.|.+|+| +|||
T Consensus 7 kcnvisidgkkkksdtysypklvvenktyefssfvlcg 44 (66)
T PF13082_consen 7 KCNVISIDGKKKKSDTYSYPKLVVENKTYEFSSFVLCG 44 (66)
T ss_pred cccEEEeccccccCCcccCceEEEeCceEEEEEEEEEc
Confidence 44445677777778888888877888888886 5676
No 134
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=25.67 E-value=13 Score=22.64 Aligned_cols=38 Identities=29% Similarity=0.606 Sum_probs=24.0
Q ss_pred hhhcccCcceeeeeecCCCCcccccccchhhHHHHhhhcccc
Q 031392 34 ELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKD 75 (160)
Q Consensus 34 ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~~~~ 75 (160)
||-+.+- ||+|||+|. +++..+. ++-..+..|++....
T Consensus 8 ElliI~v--IalllfGp~-kLP~l~r-~lGk~ir~fkk~~~~ 45 (64)
T PRK14860 8 ELIVILV--IALVVFGPA-KLPQLGQ-ALGGAIRNFKKASNE 45 (64)
T ss_pred HHHHHHH--HHHhhcCch-HHHHHHH-HHHHHHHHHHHHccc
Confidence 5555542 789999996 5655433 355667777765543
No 135
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=25.63 E-value=1.8e+02 Score=18.42 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031392 121 IDELQQLENQLERSLSRIRARK 142 (160)
Q Consensus 121 ~~eL~~Le~~Le~~l~~Vr~RK 142 (160)
++||..=-..|..-...+++-+
T Consensus 27 ieELKekn~~L~~e~~~~~~~r 48 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQR 48 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhH
Confidence 3444444444444444444333
No 136
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=25.55 E-value=4.1e+02 Score=22.39 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=31.9
Q ss_pred hhhHHHHhhhcccccccCCcchhhhhhHHHHHHhhhhhHHHHHHHHHHHhh
Q 031392 62 INKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLL 112 (160)
Q Consensus 62 ~~~il~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~~~~~~l~~~~r~~~ 112 (160)
++.+++.|.......... ......+++..++..++.+++..+..+..+.
T Consensus 140 ~n~l~~~yi~~~~~~~~~--~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 140 VQTLLTIFVEETLGSKRQ--DSDSAQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHhhcccchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667787754432211 1134467888899999999988888776653
No 137
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.54 E-value=5.7e+02 Score=24.92 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 031392 118 PCTIDELQQLENQLERSLSRIRARKNQL------FREQIEKLKEKV 157 (160)
Q Consensus 118 ~Ls~~eL~~Le~~Le~~l~~Vr~RK~~l------l~~~~~~l~~k~ 157 (160)
+.++++|+.-...++..+..++.....+ +..+|..|+.++
T Consensus 821 ~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki 866 (1311)
T TIGR00606 821 DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKT 866 (1311)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888887777777777774433322 245666665554
No 138
>cd08637 DNA_pol_A_pol_I_C Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. Family A polymerase (polymerase I) functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I (pol I) ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuc
Probab=25.52 E-value=2.1e+02 Score=23.52 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=24.2
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCHHHHHH
Q 031392 88 QHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQ 126 (160)
Q Consensus 88 e~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~~eL~~ 126 (160)
++|+.-...+.++++.++.+.+.+.|..++--|..++..
T Consensus 3 ~~l~~~~~~~~~~~~~l~~~~~~l~g~~fn~~S~~qv~~ 41 (377)
T cd08637 3 EYLEELSEELEKELAELEEEIYELAGEEFNINSPKQLGE 41 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 345555566666777777776666676666556655543
No 139
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=25.45 E-value=2.4e+02 Score=19.65 Aligned_cols=58 Identities=19% Similarity=0.382 Sum_probs=37.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 89 HAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFR 147 (160)
Q Consensus 89 ~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~ 147 (160)
.+...+..+..+++.++-..+.+..+ ...-|+..+..+..+++.-...-.++|+++..
T Consensus 24 ~l~~~i~~~d~el~QLefq~kr~~~e-~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ 81 (131)
T PF11068_consen 24 ELQEQIQQLDQELQQLEFQGKRMIKE-IKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQ 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666554444322 11223378888889999998888888888754
No 140
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=25.42 E-value=2.6e+02 Score=20.01 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=25.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 113 GDGLEPCTIDELQQLENQLERSLSRIRARKNQL 145 (160)
Q Consensus 113 g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~l 145 (160)
+-|+..||+++|..|.+++|.-+.-+..=-..|
T Consensus 7 ~idltkLsleQL~~lk~q~dqEl~~lq~Sl~~L 39 (153)
T KOG3048|consen 7 GIDLTKLSLEQLGALKKQFDQELNFLQDSLNAL 39 (153)
T ss_pred CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999988777665554444
No 141
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.34 E-value=3.2e+02 Score=25.61 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=13.5
Q ss_pred hhhHHHHHHhhhhhHHHHHHHHH
Q 031392 86 HSQHAKEETSNMMTKLEFLEVAK 108 (160)
Q Consensus 86 ~~e~l~~e~~kl~~~~~~l~~~~ 108 (160)
.++.+...+.+++++.+.++..+
T Consensus 931 e~~kl~kkl~klqk~~~~l~~r~ 953 (995)
T KOG0432|consen 931 EIQKLAKKLEKLQKQLDKLQARI 953 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666666666543
No 142
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.30 E-value=1.8e+02 Score=18.09 Aligned_cols=9 Identities=44% Similarity=0.745 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 031392 121 IDELQQLEN 129 (160)
Q Consensus 121 ~~eL~~Le~ 129 (160)
+++|..=..
T Consensus 27 ieELKEknn 35 (79)
T COG3074 27 IEELKEKNN 35 (79)
T ss_pred HHHHHHHhh
Confidence 344443333
No 143
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=25.29 E-value=2.6e+02 Score=20.03 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=35.8
Q ss_pred ccccccchhhhhhhhhcccCcceeeeeecC----CCC---------cccccc--cchhhHHHHhhhcccc
Q 031392 21 FSKRRNGLLKKAFELSVLCDAEVALIIFSP----RGK---------LYEFSS--CSINKTIERYQKKTKD 75 (160)
Q Consensus 21 f~kR~~gl~KKa~ELs~LC~~~v~~iv~s~----~gk---------~~~~~s--~~~~~il~RY~~~~~~ 75 (160)
+-.-|.-|+.-..+++-+.|.+|. |||.. .+. -..|+. .+++..|+++......
T Consensus 24 l~~aR~~Li~~L~~y~~~~~~~v~-VVFDa~~~~~~~~~~~~~~gi~Vvft~~~~tAD~~Ie~~v~~~~~ 92 (166)
T PF05991_consen 24 LEAARERLIEMLSEYAQFSGYEVI-VVFDAYKVPGGSEEREEYGGIEVVFTKEGETADDYIERLVRELKN 92 (166)
T ss_pred HHHHHHHHHHHHHHHhcccCCEEE-EEEeCCcCCCCCceeeeeCceEEEECCCCCCHHHHHHHHHHHhcc
Confidence 445566788888889999997765 55652 111 112444 3799999999886554
No 144
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=25.26 E-value=54 Score=26.30 Aligned_cols=45 Identities=11% Similarity=0.213 Sum_probs=32.6
Q ss_pred hhhhhhhhhccc-Ccceeeeeec-CCC-Cccccccc--chhhHHHHhhhc
Q 031392 28 LLKKAFELSVLC-DAEVALIIFS-PRG-KLYEFSSC--SINKTIERYQKK 72 (160)
Q Consensus 28 l~KKa~ELs~LC-~~~v~~iv~s-~~g-k~~~~~s~--~~~~il~RY~~~ 72 (160)
-+.+..+|.||. +.++++.+++ +++ .+|.+++| ....+.+.|.+-
T Consensus 200 ~i~~~~~L~vla~s~e~G~~l~~s~d~r~vfi~GH~EYd~~TL~~EY~RD 249 (300)
T TIGR01001 200 DIDKVTDLEILAESDEAGVYLAANKDERNIFVTGHPEYDAYTLHQEYVRD 249 (300)
T ss_pred HHhcCCCCeEEecCCCcceEEEEcCCCCEEEEcCCCccChhHHHHHHHHH
Confidence 346668999994 4467776665 554 57889998 678888889853
No 145
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=25.18 E-value=1.6e+02 Score=18.79 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHHH
Q 031392 118 PCTIDELQQLENQLE 132 (160)
Q Consensus 118 ~Ls~~eL~~Le~~Le 132 (160)
.||+++|..|-....
T Consensus 47 ~mtp~eL~~~L~~~~ 61 (83)
T PF14193_consen 47 KMTPEELAAFLRAMK 61 (83)
T ss_pred CCCHHHHHHHHHHHH
Confidence 578888887766553
No 146
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=25.17 E-value=42 Score=27.00 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=19.8
Q ss_pred hcccCcceeeeeecCC--CCccc-ccc
Q 031392 36 SVLCDAEVALIIFSPR--GKLYE-FSS 59 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~--gk~~~-~~s 59 (160)
+++.|.++|++.|+++ ||.|+ |+.
T Consensus 75 ~~~~G~n~~i~ayG~tgSGKTyTm~G~ 101 (334)
T cd01375 75 SALDGYNGTIFAYGQTGAGKTFTMTGG 101 (334)
T ss_pred HHhCCCccceeeecCCCCCCeEEccCC
Confidence 5789999999999975 58887 664
No 147
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=25.04 E-value=48 Score=26.71 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=19.7
Q ss_pred hcccCcceeeeeecCC--CCccc-ccc
Q 031392 36 SVLCDAEVALIIFSPR--GKLYE-FSS 59 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~--gk~~~-~~s 59 (160)
+++.|..+|++.|+.+ ||.|+ |+.
T Consensus 69 ~~~~G~n~ti~aYGqTGSGKTyTm~G~ 95 (337)
T cd01373 69 DCLSGYNGSIFAYGQTGSGKTYTMMGP 95 (337)
T ss_pred HHhCCCceeEEEeCCCCCCceEEecCC
Confidence 5789999999999965 58887 664
No 148
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=24.74 E-value=78 Score=19.62 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=28.5
Q ss_pred cchhhhhhhhhcccCcceeeeeecCCCCccccc
Q 031392 26 NGLLKKAFELSVLCDAEVALIIFSPRGKLYEFS 58 (160)
Q Consensus 26 ~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~ 58 (160)
.++..+-.++-++.|++|-++-.+|-|.|..+.
T Consensus 20 ~~~~~rL~~mGl~pG~~V~v~~~aP~gdPi~i~ 52 (74)
T PRK09555 20 PAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHIE 52 (74)
T ss_pred hHHHHHHHHcCCCCCCEEEEEEECCCCCCEEEE
Confidence 457888999999999999999999988877653
No 149
>PRK10132 hypothetical protein; Provisional
Probab=24.52 E-value=2.3e+02 Score=19.05 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=32.2
Q ss_pred hhhhHHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 85 DHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKN 143 (160)
Q Consensus 85 ~~~e~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~ 143 (160)
.+.+.+..++..|-...+.+- ....+-+-+++..+-..++..|...|++-.
T Consensus 12 ~q~e~L~~Dl~~L~~~le~ll--------~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~ 62 (108)
T PRK10132 12 DGVQDIQNDVNQLADSLESVL--------KSWGSDAKGEAEAARRKAQALLKETRARMH 62 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666655554444332 222345667888899999999988887654
No 150
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=24.34 E-value=1.5e+02 Score=20.76 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=28.0
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCH
Q 031392 87 SQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTI 121 (160)
Q Consensus 87 ~e~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~ 121 (160)
+..|+.++++.++.+..+-..++++.|-|.++.-.
T Consensus 5 v~~Lq~qlE~Ake~Lk~vDenIkKltGRDp~e~rp 39 (134)
T PF04697_consen 5 VRTLQAQLEKAKESLKNVDENIKKLTGRDPSENRP 39 (134)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhCCCccccCc
Confidence 44578888999999999999999999987665443
No 151
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=24.18 E-value=1.1e+02 Score=24.08 Aligned_cols=26 Identities=23% Similarity=0.560 Sum_probs=22.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH
Q 031392 114 DGLEPCTIDELQQLENQLERSLSRIR 139 (160)
Q Consensus 114 ~~l~~Ls~~eL~~Le~~Le~~l~~Vr 139 (160)
+.=-+|+++|+..+|......|..+|
T Consensus 232 DeW~gltmedIR~~E~~t~~~l~~~~ 257 (258)
T cd08888 232 DKWHGLTMDDIRRMEDETKKELDEMR 257 (258)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 44557999999999999999999887
No 152
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=24.05 E-value=2.1e+02 Score=18.39 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=8.7
Q ss_pred hhhhhcccCcceeeee
Q 031392 32 AFELSVLCDAEVALII 47 (160)
Q Consensus 32 a~ELs~LC~~~v~~iv 47 (160)
.+|+|-+||+.+..|-
T Consensus 3 i~eva~~~gvs~~tLR 18 (96)
T cd04768 3 IGEFAKLAGVSIRTLR 18 (96)
T ss_pred HHHHHHHHCcCHHHHH
Confidence 3566666665554443
No 153
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=23.89 E-value=1.9e+02 Score=18.03 Aligned_cols=57 Identities=21% Similarity=0.332 Sum_probs=28.3
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHhhCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 87 SQHAKEETSNMMTKLEFLEVAKRKLLGDGLEP-CTIDELQQLENQLERSLSRIRARKN 143 (160)
Q Consensus 87 ~e~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~-Ls~~eL~~Le~~Le~~l~~Vr~RK~ 143 (160)
++..+..+..+...++.+...+...+.....+ -.-.++..|...+......++.+..
T Consensus 9 v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk 66 (103)
T PF00804_consen 9 VQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLK 66 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777776665554433322 1112344444444444444444433
No 154
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=23.69 E-value=2e+02 Score=18.36 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=10.5
Q ss_pred hhhhcccCcceeeeeecCCCCccc
Q 031392 33 FELSVLCDAEVALIIFSPRGKLYE 56 (160)
Q Consensus 33 ~ELs~LC~~~v~~iv~s~~gk~~~ 56 (160)
.||..+-+- ..||-.-|++|.
T Consensus 36 ~eL~~l~~~---~~~y~~vG~~fv 56 (106)
T PF01920_consen 36 EELEKLDDD---RKVYKSVGKMFV 56 (106)
T ss_dssp HHHHTSSTT----EEEEEETTEEE
T ss_pred HHHHhCCCc---chhHHHHhHHHH
Confidence 566665443 344444466654
No 155
>PLN03128 DNA topoisomerase 2; Provisional
Probab=23.69 E-value=5.6e+02 Score=24.75 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=19.0
Q ss_pred eeeeecCCCCcccccccchhhHHHHhhhc
Q 031392 44 ALIIFSPRGKLYEFSSCSINKTIERYQKK 72 (160)
Q Consensus 44 ~~iv~s~~gk~~~~~s~~~~~il~RY~~~ 72 (160)
-+++|.+.|++..|.+ +.+||..|..+
T Consensus 961 nm~l~d~~~~i~ky~~--~~~il~~f~~~ 987 (1135)
T PLN03128 961 NMHLFDKDGKIKKYDS--PEDILEEFFHL 987 (1135)
T ss_pred EEEEECCCCcccCCCC--HHHHHHHHHHH
Confidence 4677888888776644 56777777654
No 156
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=23.65 E-value=42 Score=19.06 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=16.6
Q ss_pred hhhhhhhhhcccCcceeeeeec
Q 031392 28 LLKKAFELSVLCDAEVALIIFS 49 (160)
Q Consensus 28 l~KKa~ELs~LC~~~v~~iv~s 49 (160)
|.+.+..-+=||+++..+.+|-
T Consensus 2 L~~Rs~~kCELC~a~~~L~vy~ 23 (47)
T smart00782 2 LLARCESKCELCGSDSPLVVYA 23 (47)
T ss_pred hhHHcCCcccCcCCCCCceEEe
Confidence 3444555678999999999886
No 157
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=23.62 E-value=2.2e+02 Score=18.61 Aligned_cols=78 Identities=9% Similarity=0.121 Sum_probs=37.5
Q ss_pred hhhhhcccCcceeeee-------ecCCCC---cccccccchhhHHHHhhhcccccccCCcchhhhhhHHHHHHhhhhhHH
Q 031392 32 AFELSVLCDAEVALII-------FSPRGK---LYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKL 101 (160)
Q Consensus 32 a~ELs~LC~~~v~~iv-------~s~~gk---~~~~~s~~~~~il~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~~~~ 101 (160)
..|||..||++...|. +.|.+. -+.|.+. .-.++.+......+-.-+... -.-+-.|-.++..|+.++
T Consensus 10 ~~Elc~~~gi~~~~l~eLve~GlIep~~~~~~~~~F~~~-~l~r~~~a~rL~~dl~in~~g-ialvl~LLd~i~~Lr~el 87 (101)
T PRK10265 10 ITEFCLHTGVSEEELNEIVGLGVIEPREIQETTWVFDDH-AAIVVQRAVRLRHELALDWPG-IAVALTLLDEIAHLKQEN 87 (101)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCeecCCCCcccceECHH-HHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 4688999998776542 223322 2234332 223344444433221111110 122334556677777777
Q ss_pred HHHHHHHHHh
Q 031392 102 EFLEVAKRKL 111 (160)
Q Consensus 102 ~~l~~~~r~~ 111 (160)
..++..++.+
T Consensus 88 ~~L~~~l~~~ 97 (101)
T PRK10265 88 RLLRQRLSRF 97 (101)
T ss_pred HHHHHHHHHH
Confidence 7766655444
No 158
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=23.51 E-value=2.2e+02 Score=18.44 Aligned_cols=38 Identities=26% Similarity=0.445 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 118 PCTIDELQQLENQL-ERSLSRIRARKNQLFREQIEKLKEK 156 (160)
Q Consensus 118 ~Ls~~eL~~Le~~L-e~~l~~Vr~RK~~ll~~~~~~l~~k 156 (160)
+++++++..+-... +....-+.++. .-+.++++.++.-
T Consensus 57 g~~l~~i~~~~~~~~~~~~~~l~~~~-~~l~~~i~~l~~~ 95 (103)
T cd01106 57 GFSLKEIKELLKDPSEDLLEALREQK-ELLEEKKERLDKL 95 (103)
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 45666666655554 23333333333 3334555555443
No 159
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=23.48 E-value=46 Score=25.38 Aligned_cols=19 Identities=37% Similarity=0.742 Sum_probs=15.6
Q ss_pred ccCcceeeeeecCCCCccc
Q 031392 38 LCDAEVALIIFSPRGKLYE 56 (160)
Q Consensus 38 LC~~~v~~iv~s~~gk~~~ 56 (160)
..|-|-.+.||||.|++|.
T Consensus 6 ~agfDrhitIFspeGrLyQ 24 (246)
T KOG0182|consen 6 SAGFDRHITIFSPEGRLYQ 24 (246)
T ss_pred cCCccceEEEECCCceEEe
Confidence 3566778899999999885
No 160
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.23 E-value=1.7e+02 Score=17.62 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=12.7
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHH
Q 031392 87 SQHAKEETSNMMTKLEFLEVAKRK 110 (160)
Q Consensus 87 ~e~l~~e~~kl~~~~~~l~~~~r~ 110 (160)
+..++.+++.++.+++.++.....
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554433
No 161
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=23.19 E-value=98 Score=22.77 Aligned_cols=18 Identities=56% Similarity=0.689 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031392 123 ELQQLENQLERSLSRIRA 140 (160)
Q Consensus 123 eL~~Le~~Le~~l~~Vr~ 140 (160)
||++||.+|++.+-.|++
T Consensus 160 ElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 160 ELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 456666777666666654
No 162
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=23.08 E-value=3.1e+02 Score=20.14 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 123 ELQQLENQLERSLSRIRARKNQLFREQIEKLKEKV 157 (160)
Q Consensus 123 eL~~Le~~Le~~l~~Vr~RK~~ll~~~~~~l~~k~ 157 (160)
++..|...|...+..=.=-..-++.+||..|+.|.
T Consensus 137 ~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~ 171 (176)
T COG3880 137 KIIALKEALQDLIEREEFEEAAVIRDQIRALKAKN 171 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66777777777776655556668889999998874
No 163
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=22.87 E-value=54 Score=21.97 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=14.9
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 031392 115 GLEPCTIDELQQLENQLE 132 (160)
Q Consensus 115 ~l~~Ls~~eL~~Le~~Le 132 (160)
.++.|+.+|++.|...++
T Consensus 86 Rle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 86 RLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHhCCHHHHHHHHHHhc
Confidence 457889999999988876
No 164
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=22.67 E-value=7.2e+02 Score=24.70 Aligned_cols=110 Identities=19% Similarity=0.327 Sum_probs=0.0
Q ss_pred eeeecCCCCcccccccchhhHHHHhhhcccccccCCcchhhhhhHHHHHHhhhhhHHHHHHHH-----------------
Q 031392 45 LIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVA----------------- 107 (160)
Q Consensus 45 ~iv~s~~gk~~~~~s~~~~~il~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~~~~~~l~~~----------------- 107 (160)
+++|.++|+.+.|.++ .+||..|..+--.--.... +..+..++.++..|..+...+...
T Consensus 963 m~~~d~~g~i~~~~~~--~~Il~~f~~~Rl~~y~kR~--~~~l~~l~~~~~~l~~~~rFI~~vi~~~i~i~~~~k~~l~~ 1038 (1388)
T PTZ00108 963 MVLFDENGKIKKYSDA--LDILKEFYLVRLDLYKKRK--EYLLGKLERELARLSNKVRFIKHVINGELVITNAKKKDLVK 1038 (1388)
T ss_pred EEEEeCCCCcceeCCH--HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhCeeEEccCCHHHHHH
Q ss_pred -------------------------------------------------HHHhhCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 031392 108 -------------------------------------------------KRKLLGDGLEPCTIDELQQLENQLERSLSRI 138 (160)
Q Consensus 108 -------------------------------------------------~r~~~g~~l~~Ls~~eL~~Le~~Le~~l~~V 138 (160)
--.+++.+|-+|+.+....|..+++.....+
T Consensus 1039 ~L~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~sLT~e~v~kL~~e~~~~~~e~ 1118 (1388)
T PTZ00108 1039 ELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKEL 1118 (1388)
T ss_pred HHHHcCCCccchhhhhcccccccccccccccccccccccccccccchhhhHHHhcCCHHhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH----HHHHHHHHHHHHHh
Q 031392 139 RARKNQ----LFREQIEKLKEKVI 158 (160)
Q Consensus 139 r~RK~~----ll~~~~~~l~~k~~ 158 (160)
..=+.. ++.+.++.+.++..
T Consensus 1119 ~~L~~~t~~~lw~~DL~~~~~~~~ 1142 (1388)
T PTZ00108 1119 EKLKNTTPKDMWLEDLDKFEEALE 1142 (1388)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHH
No 165
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=22.66 E-value=2.5e+02 Score=18.85 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 117 EPCTIDELQQLENQLERSLSRIRARKNQL 145 (160)
Q Consensus 117 ~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~l 145 (160)
.+.+-+++..|-..++..|+++|.|-...
T Consensus 32 g~~a~~e~~~lR~r~~~~Lk~~r~rl~~~ 60 (104)
T COG4575 32 GSLAGDEAEELRSKAESALKEARDRLGDT 60 (104)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56678899999999999999999987654
No 166
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.25 E-value=1.1e+02 Score=22.52 Aligned_cols=11 Identities=45% Similarity=0.688 Sum_probs=5.6
Q ss_pred eeeecCCCCcc
Q 031392 45 LIIFSPRGKLY 55 (160)
Q Consensus 45 ~iv~s~~gk~~ 55 (160)
++|||=+|-++
T Consensus 76 ~~iF~vggg~l 86 (181)
T KOG3335|consen 76 LFIFSVGGGVL 86 (181)
T ss_pred HHheeecceee
Confidence 35666555443
No 167
>PHA02773 hypothetical protein; Provisional
Probab=22.19 E-value=58 Score=21.31 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=23.7
Q ss_pred hhhhhhhhh-cccCcceeeeeecCCCCccccccc
Q 031392 28 LLKKAFELS-VLCDAEVALIIFSPRGKLYEFSSC 60 (160)
Q Consensus 28 l~KKa~ELs-~LC~~~v~~iv~s~~gk~~~~~s~ 60 (160)
|+-.-.|++ +--+-|.|+.+|.+.|+++.|-..
T Consensus 28 ll~rffeiae~de~gdlciply~segdl~lfkkd 61 (112)
T PHA02773 28 LLIRFFEIAEKDEDGDLCIPLYDSEGDLFLFKKD 61 (112)
T ss_pred HHHHHHHHheecCCCCEEEEeecCCCcEEEEecc
Confidence 333444443 567889999999999999888553
No 168
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=22.15 E-value=1.2e+02 Score=17.14 Aligned_cols=8 Identities=50% Similarity=0.679 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 031392 149 QIEKLKEK 156 (160)
Q Consensus 149 ~~~~l~~k 156 (160)
||..|++|
T Consensus 27 qIaeLe~K 34 (46)
T PF08946_consen 27 QIAELEAK 34 (46)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 169
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=22.06 E-value=2.2e+02 Score=20.58 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=9.5
Q ss_pred hhhhhcccCcceeeee
Q 031392 32 AFELSVLCDAEVALII 47 (160)
Q Consensus 32 a~ELs~LC~~~v~~iv 47 (160)
.+|+|-+||+.+-.|-
T Consensus 4 I~evA~~~gvs~~tLR 19 (172)
T cd04790 4 ISQLARQFGLSRSTLL 19 (172)
T ss_pred HHHHHHHHCcCHHHHH
Confidence 4566667766555443
No 170
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=22.00 E-value=35 Score=25.72 Aligned_cols=16 Identities=44% Similarity=0.812 Sum_probs=11.9
Q ss_pred eeeeecCCCCccc--ccc
Q 031392 44 ALIIFSPRGKLYE--FSS 59 (160)
Q Consensus 44 ~~iv~s~~gk~~~--~~s 59 (160)
.+-+|||+|++|. |+.
T Consensus 4 ~~t~fsp~Grl~QveyA~ 21 (227)
T cd03750 4 SLTTFSPSGKLVQIEYAL 21 (227)
T ss_pred CCceECCCCeEhHHHHHH
Confidence 4568999999875 643
No 171
>COG3411 Ferredoxin [Energy production and conversion]
Probab=21.91 E-value=70 Score=19.49 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=21.3
Q ss_pred eeeeecCCCCccccccc-chhhHHHHhhh
Q 031392 44 ALIIFSPRGKLYEFSSC-SINKTIERYQK 71 (160)
Q Consensus 44 ~~iv~s~~gk~~~~~s~-~~~~il~RY~~ 71 (160)
.++++.|+|--|...+| .+++|++....
T Consensus 18 Pvl~vYpegvWY~~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 18 PVLVVYPEGVWYTRVDPEDARRIVQSHLL 46 (64)
T ss_pred CEEEEecCCeeEeccCHHHHHHHHHHHHh
Confidence 46777888977877776 78888887654
No 172
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=21.80 E-value=1.1e+02 Score=14.59 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=6.7
Q ss_pred HhhhhhHHHHHHHH
Q 031392 94 TSNMMTKLEFLEVA 107 (160)
Q Consensus 94 ~~kl~~~~~~l~~~ 107 (160)
+..++.+|.+|+..
T Consensus 3 ~~rlr~rI~dLer~ 16 (23)
T PF04508_consen 3 MNRLRNRISDLERQ 16 (23)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555555443
No 173
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.75 E-value=1.5e+02 Score=26.55 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=27.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 115 GLEPCTIDELQQLENQLERSLSRIRARKNQLFR 147 (160)
Q Consensus 115 ~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~ 147 (160)
|..++|.+.|.+|...|...-..-..|.+.++.
T Consensus 153 D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~ 185 (660)
T KOG4302|consen 153 DESDLSLEKLEELREHLNELQKEKSDRLEKVLE 185 (660)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999888888888877643
No 174
>PF02145 Rap_GAP: Rap/ran-GAP; InterPro: IPR000331 The Rap/ran-GAP domain is found in the GTPase activating protein (GAP) responsible for the activation of nuclear Ras-related regulatory proteins Rap1, Rsr1 and Ran in vitro converting it to the putatively inactive GDP-bound state [, ]. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. RanGAP is a leucine rich repeat containing protein which forms a highly curved crescent. Each LRR forms a short beta-strand and a longer alpha-helix that results in a beta-alpha hairpin motif []. The domain is also present in tuberin (a tuberous sclerosis homologue protein) that specifically stimulates the intrinsic GTPase activity of Ras-related protein Rap1A suggesting a possible mechanism for its role in the regulation of cellular growth.; GO: 0005096 GTPase activator activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 1SRQ_C 3BRW_B.
Probab=21.57 E-value=55 Score=24.10 Aligned_cols=19 Identities=26% Similarity=0.641 Sum_probs=10.8
Q ss_pred CcceeeeeecCCCCccccc
Q 031392 40 DAEVALIIFSPRGKLYEFS 58 (160)
Q Consensus 40 ~~~v~~iv~s~~gk~~~~~ 58 (160)
|.|+++|||.++|.+|...
T Consensus 80 GND~V~IVf~E~~~~y~~~ 98 (188)
T PF02145_consen 80 GNDIVVIVFNESGQPYDPS 98 (188)
T ss_dssp TT-SEEEEEESS-----GG
T ss_pred cCCEEEEEEeCCCCccChh
Confidence 4899999999998877643
No 175
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=21.32 E-value=61 Score=20.70 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=20.4
Q ss_pred hhhhhhhhhccc----CcceeeeeecCCCCccc
Q 031392 28 LLKKAFELSVLC----DAEVALIIFSPRGKLYE 56 (160)
Q Consensus 28 l~KKa~ELs~LC----~~~v~~iv~s~~gk~~~ 56 (160)
+|+.|.+++-.. ...|+.+|++|+|+...
T Consensus 7 ~m~~a~~~a~~s~~~~~~~vgaviv~~~~~~i~ 39 (102)
T PF00383_consen 7 FMRIAIELAKRSRPCGNFPVGAVIVDPDGKIIA 39 (102)
T ss_dssp HHHHHHHHHHTHBTTTSSSEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHhccccCCCCEEEEEEeccCccEE
Confidence 466666665555 78899999998765443
No 176
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=21.31 E-value=3e+02 Score=21.58 Aligned_cols=19 Identities=5% Similarity=-0.008 Sum_probs=8.8
Q ss_pred HHHHHhhhhhHHHHHHHHH
Q 031392 90 AKEETSNMMTKLEFLEVAK 108 (160)
Q Consensus 90 l~~e~~kl~~~~~~l~~~~ 108 (160)
+..+++.|..++..-+..+
T Consensus 192 l~~~i~~lE~~VaeQ~~qL 210 (259)
T PF08657_consen 192 LSNSIAYLEAEVAEQEAQL 210 (259)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455544444444433
No 177
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=21.20 E-value=64 Score=23.01 Aligned_cols=18 Identities=44% Similarity=0.660 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 031392 116 LEPCTIDELQQLENQLER 133 (160)
Q Consensus 116 l~~Ls~~eL~~Le~~Le~ 133 (160)
|..||.+||.+|+..|+.
T Consensus 21 L~~LS~EEL~~L~~el~e 38 (147)
T PF03250_consen 21 LAKLSPEELEELENELEE 38 (147)
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 457999999999988754
No 178
>KOG4316 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.14 E-value=44 Score=23.88 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=26.0
Q ss_pred hhhhhcccCcceeeeeec----CC--CCccccccc-----chhhHHHHhhhccc
Q 031392 32 AFELSVLCDAEVALIIFS----PR--GKLYEFSSC-----SINKTIERYQKKTK 74 (160)
Q Consensus 32 a~ELs~LC~~~v~~iv~s----~~--gk~~~~~s~-----~~~~il~RY~~~~~ 74 (160)
..++++||++..-+.--. |. ..+.-|+.- .++.||+||+.+.-
T Consensus 42 ~~a~~~lcq~p~vla~r~a~~~Ps~~r~~t~Fs~~kGkrktvkaVldRFkRL~~ 95 (172)
T KOG4316|consen 42 TSARNLLCQHPSVLANRMAPVLPSVVRSLTYFSARKGKRKTVKAVLDRFKRLHC 95 (172)
T ss_pred chHHHhHhcCcHHHHhccCCCCcchhhhhhhhhhhhcccccHHHHHHHHHhccc
Confidence 368899998765443111 22 122224332 59999999998653
No 179
>PF09638 Ph1570: Ph1570 protein; InterPro: IPR018596 This entry includes a hypothetical protein from Pyrococcus horikoshii, which has no known function. It contains six alpha helices and eight beta strands and is thought to be monomeric. ; PDB: 2HQ4_B.
Probab=21.07 E-value=61 Score=22.70 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=20.4
Q ss_pred eecCCCCcccccccchhhHHHHhhh
Q 031392 47 IFSPRGKLYEFSSCSINKTIERYQK 71 (160)
Q Consensus 47 v~s~~gk~~~~~s~~~~~il~RY~~ 71 (160)
+..|.|.+|.|.-|++.++|-+|.-
T Consensus 126 ild~~g~LfvFnKPs~~e~ilKYig 150 (152)
T PF09638_consen 126 ILDERGRLFVFNKPSARELILKYIG 150 (152)
T ss_dssp EE-TTSEEEEESSTTHHHHHHTTTT
T ss_pred EECCCceEEEEcCccHHHHHHHHHh
Confidence 4457889999999999999988853
No 180
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=21.04 E-value=2.7e+02 Score=18.74 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031392 128 ENQLERSLSRIRARKNQL 145 (160)
Q Consensus 128 e~~Le~~l~~Vr~RK~~l 145 (160)
...++..+..+.++..+|
T Consensus 78 ~~~l~~~~~~l~~~i~~L 95 (124)
T TIGR02051 78 YELASRKLKSVQAKMADL 95 (124)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555553
No 181
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=20.92 E-value=66 Score=22.79 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=19.1
Q ss_pred hhcccCcceeeeeecCCCCcccccc
Q 031392 35 LSVLCDAEVALIIFSPRGKLYEFSS 59 (160)
Q Consensus 35 Ls~LC~~~v~~iv~s~~gk~~~~~s 59 (160)
+++-||||+-+++.+.+.....||.
T Consensus 58 i~ta~dad~V~ll~dat~~~~~~pP 82 (143)
T PF10662_consen 58 IVTAQDADVVLLLQDATEPRSVFPP 82 (143)
T ss_pred HHHHhhCCEEEEEecCCCCCccCCc
Confidence 5788999999999998765444543
No 182
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=20.87 E-value=19 Score=23.23 Aligned_cols=35 Identities=14% Similarity=0.501 Sum_probs=21.9
Q ss_pred hhhcccCcceeeeeecCCCCcccccccchhhHHHHhhhc
Q 031392 34 ELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKK 72 (160)
Q Consensus 34 ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~ 72 (160)
||-++. =|++|||+|. +++..+.. +-..+..|++.
T Consensus 7 ElliI~--vI~lllFGp~-KLP~~~r~-lGk~ir~FK~~ 41 (84)
T PRK00191 7 EIGIIV--LLIIVLFGAK-KLPDAARS-IGRSMRIFKSE 41 (84)
T ss_pred HHHHHH--HHHHHHhcch-HHHHHHHH-HHHHHHHHHHH
Confidence 555544 3688999996 66665443 55556666653
No 183
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.85 E-value=2.5e+02 Score=18.25 Aligned_cols=14 Identities=0% Similarity=-0.012 Sum_probs=6.6
Q ss_pred hhhhcccCcceeee
Q 031392 33 FELSVLCDAEVALI 46 (160)
Q Consensus 33 ~ELs~LC~~~v~~i 46 (160)
.|+|-+||+-+--|
T Consensus 4 ge~a~~~gvs~~tl 17 (107)
T cd04777 4 GKFAKKNNITIDTV 17 (107)
T ss_pred HHHHHHHCcCHHHH
Confidence 45555555444333
No 184
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=20.71 E-value=5.2e+02 Score=23.22 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=32.2
Q ss_pred hhhHHHHHHhhhhhHHHHHHHHHHHhh------CCCCCCCCHHHHHHHHHHHHHHH
Q 031392 86 HSQHAKEETSNMMTKLEFLEVAKRKLL------GDGLEPCTIDELQQLENQLERSL 135 (160)
Q Consensus 86 ~~e~l~~e~~kl~~~~~~l~~~~r~~~------g~~l~~Ls~~eL~~Le~~Le~~l 135 (160)
..+++..++..++++++..+.....+. +..-..+...+|.++..+|..+-
T Consensus 195 a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~ 250 (754)
T TIGR01005 195 AADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRAR 250 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHH
Confidence 356788888888888888876664432 11223344467888777766543
No 185
>PRK00587 hypothetical protein; Provisional
Probab=20.53 E-value=2.7e+02 Score=18.41 Aligned_cols=36 Identities=6% Similarity=0.051 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKL 153 (160)
Q Consensus 118 ~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~~~~~~l 153 (160)
-+..+|..-|+..|-.+++....+-++...+.+..+
T Consensus 56 lld~eD~E~LeDLI~aA~NdA~~k~~e~~~e~m~~~ 91 (99)
T PRK00587 56 LIDPEDKETLQDMLREAINEAISITCKERDAIMNST 91 (99)
T ss_pred HcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356678888888888888888888877766665543
No 186
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.43 E-value=2.7e+02 Score=18.51 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031392 128 ENQLERSLSRIRARKNQL 145 (160)
Q Consensus 128 e~~Le~~l~~Vr~RK~~l 145 (160)
...|+..+..+..+..+|
T Consensus 81 ~~~l~~~~~~l~~~i~~l 98 (123)
T cd04770 81 RALLEEKLAEVEAKIAEL 98 (123)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
No 187
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=20.37 E-value=3.4e+02 Score=19.50 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=33.2
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHh--hCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 87 SQHAKEETSNMMTKLEFLEVAKRKL--LGDGLEPCTIDELQQLENQLERSLSRIRARKNQLF 146 (160)
Q Consensus 87 ~e~l~~e~~kl~~~~~~l~~~~r~~--~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll 146 (160)
+..++-....++.++..++..++.. +| ++|++-|-.+|.-.-......|.+|-.+|.
T Consensus 8 i~~~Rl~~~~lk~~l~k~~~ql~~ke~lg---e~L~~iDFeqLkien~~l~~kIeERn~eL~ 66 (177)
T PF13870_consen 8 ISKLRLKNITLKHQLAKLEEQLRQKEELG---EGLHLIDFEQLKIENQQLNEKIEERNKELL 66 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555444443 33 445677777777777777777777766654
No 188
>COG3938 Proline racemase [Amino acid transport and metabolism]
Probab=20.14 E-value=84 Score=25.36 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=20.0
Q ss_pred ccCcceeeeeecCCCCcccccccc
Q 031392 38 LCDAEVALIIFSPRGKLYEFSSCS 61 (160)
Q Consensus 38 LC~~~v~~iv~s~~gk~~~~~s~~ 61 (160)
--||++|+|++-|+|-++-.+|.+
T Consensus 72 ~pda~aa~ii~eps~~~pMsGsnt 95 (341)
T COG3938 72 RPDADAAVIIMEPSGCLPMSGSNT 95 (341)
T ss_pred CCCccEEEEEEccCCCCCcCCCCc
Confidence 348999999999999888777763
No 189
>PF11807 DUF3328: Domain of unknown function (DUF3328); InterPro: IPR021765 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes.
Probab=20.06 E-value=86 Score=22.67 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=12.9
Q ss_pred hcccCcceeeeeecC
Q 031392 36 SVLCDAEVALIIFSP 50 (160)
Q Consensus 36 s~LC~~~v~~iv~s~ 50 (160)
+|+|.||+.++-|..
T Consensus 173 ~imC~aD~tl~~~~~ 187 (217)
T PF11807_consen 173 SIMCHADTTLEPFYW 187 (217)
T ss_pred HhhccCCCceeeeee
Confidence 799999999996654
No 190
>PRK09039 hypothetical protein; Validated
Probab=20.01 E-value=4.8e+02 Score=21.18 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=13.5
Q ss_pred hhhHHHHHHhhhhhHHHHHHHHH
Q 031392 86 HSQHAKEETSNMMTKLEFLEVAK 108 (160)
Q Consensus 86 ~~e~l~~e~~kl~~~~~~l~~~~ 108 (160)
.+..|+.+++.|+.++..++..+
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666665544
Done!