Query 031392
Match_columns 160
No_of_seqs 147 out of 1301
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 21:39:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 2.5E-41 8.7E-46 218.7 1.7 78 2-79 1-78 (90)
2 1egw_A MADS box transcription 100.0 3.2E-41 1.1E-45 213.4 1.1 74 2-75 1-74 (77)
3 1mnm_A Protein (MCM1 transcrip 100.0 4.6E-39 1.6E-43 211.5 0.4 72 1-72 16-87 (100)
4 1hbx_A SRF, serum response fac 100.0 5.2E-39 1.8E-43 208.7 -0.3 71 1-71 10-80 (92)
5 1k6o_B SRF, serum response fac 100.0 3E-38 1E-42 208.9 0.0 69 1-69 9-77 (103)
6 1j1d_C Troponin I, TNI; THIN f 75.5 16 0.00054 24.7 9.5 45 113-157 52-102 (133)
7 1ytz_T Troponin T; muscle, THI 75.0 11 0.00039 24.4 6.2 46 113-158 36-87 (107)
8 1j1d_B Troponin T, TNT; THIN f 74.0 11 0.00038 24.4 5.9 44 115-158 38-87 (106)
9 3nrf_A APAG protein; structura 71.4 0.7 2.4E-05 30.0 -0.3 50 11-67 21-70 (106)
10 1ybx_A Conserved hypothetical 59.4 39 0.0013 23.0 7.3 67 87-153 43-132 (143)
11 2ky6_A Mediator of RNA polymer 57.6 7 0.00024 27.3 2.6 36 36-71 116-159 (166)
12 1j1e_C Troponin I, TNI; THIN f 57.4 48 0.0017 23.5 9.3 45 113-157 52-102 (180)
13 1m2d_A [2Fe-2S] ferredoxin; th 57.0 6.2 0.00021 25.4 2.2 32 39-71 59-91 (110)
14 1go4_E MAD1 (mitotic arrest de 55.3 12 0.00042 23.9 3.3 25 86-110 20-44 (100)
15 2oa5_A Hypothetical protein BQ 54.9 41 0.0014 21.8 6.5 59 86-144 9-69 (110)
16 1g6u_A Domain swapped dimer; d 47.8 29 0.001 18.2 4.8 27 117-143 15-41 (48)
17 2l16_A SEC-independent protein 44.7 1.1 3.7E-05 27.6 -2.9 30 43-74 16-45 (78)
18 4gfh_A DNA topoisomerase 2; to 40.6 1.8E+02 0.0063 26.7 9.6 46 111-156 1116-1165(1177)
19 2rpa_A Katanin P60 ATPase-cont 40.0 23 0.0008 21.5 2.7 35 29-74 16-50 (78)
20 1a93_B MAX protein, coiled coi 38.8 40 0.0014 17.1 3.3 20 90-109 12-31 (34)
21 2zvv_Y Cyclin-dependent kinase 38.5 7.3 0.00025 18.2 0.2 12 15-26 15-26 (26)
22 1j8b_A YBAB; hypothetical prot 36.4 85 0.0029 20.2 5.4 63 90-153 13-98 (112)
23 3nzj_F Proteasome component C1 36.1 7.5 0.00026 29.6 -0.0 21 36-56 3-23 (288)
24 2yy0_A C-MYC-binding protein; 35.6 58 0.002 18.1 3.8 24 85-108 19-42 (53)
25 3hvz_A Uncharacterized protein 34.4 23 0.00079 21.3 2.1 23 45-67 8-31 (78)
26 2dfs_A Myosin-5A; myosin-V, in 33.4 2.7E+02 0.0094 25.2 10.0 10 26-35 924-933 (1080)
27 3jrn_A AT1G72930 protein; TIR 32.7 20 0.00069 25.3 1.8 33 38-70 60-92 (176)
28 3rmq_A Uncharacterized protein 31.5 11 0.00037 24.7 0.1 14 33-46 30-43 (116)
29 2v71_A Nuclear distribution pr 30.4 1.5E+02 0.005 21.1 10.2 6 55-60 3-8 (189)
30 1iru_G 20S proteasome; cell cy 30.3 13 0.00045 27.5 0.5 20 37-56 3-22 (254)
31 3h4p_A Proteasome subunit alph 29.2 14 0.00048 27.6 0.5 17 40-56 11-27 (264)
32 2ygg_A Sodium/hydrogen exchang 28.8 91 0.0031 18.5 3.9 25 118-142 3-27 (70)
33 1ytz_I Troponin I; muscle, THI 28.6 1.6E+02 0.0054 20.9 7.3 44 113-157 50-99 (182)
34 2phn_A F420-0:gamma-glutamyl l 28.6 9.3 0.00032 28.7 -0.6 27 34-60 138-164 (254)
35 1ryp_E 20S proteasome; multica 27.3 14 0.00048 26.9 0.2 14 43-56 2-15 (242)
36 3sl9_C B-cell CLL/lymphoma 9 p 27.1 79 0.0027 17.2 3.1 22 112-133 3-24 (55)
37 4a17_T RPL24, 60S ribosomal pr 26.7 31 0.0011 23.9 1.8 44 34-78 6-53 (158)
38 1ryp_D 20S proteasome; multica 26.6 16 0.00055 26.6 0.4 15 42-56 3-17 (241)
39 2l5g_B Putative uncharacterize 26.3 80 0.0027 16.7 5.3 27 119-145 2-28 (42)
40 2dm0_A Tyrosine-protein kinase 26.1 51 0.0017 21.3 2.8 42 33-74 52-104 (125)
41 2k1v_A Insulin-like peptide IN 25.9 21 0.0007 16.9 0.6 9 32-40 14-22 (26)
42 2jo8_A Serine/threonine-protei 25.8 89 0.0031 17.3 3.3 19 116-134 7-25 (51)
43 2l5g_A GPS2 protein, G protein 25.4 78 0.0027 16.3 3.6 20 88-107 11-30 (38)
44 1ryp_B 20S proteasome; multica 25.1 18 0.00063 26.5 0.5 17 40-56 4-20 (250)
45 1iru_B 20S proteasome; cell cy 24.4 19 0.00066 26.1 0.5 16 41-56 5-20 (233)
46 2ekx_A Cytoplasmic tyrosine-pr 24.1 63 0.0021 20.2 2.9 34 41-74 63-99 (110)
47 2xus_A Breast cancer metastasi 23.7 1E+02 0.0034 16.9 5.0 29 122-157 13-41 (49)
48 1iru_D 20S proteasome; cell cy 23.6 20 0.00068 26.3 0.4 15 42-56 4-18 (248)
49 2jee_A YIIU; FTSZ, septum, coi 23.5 1.3E+02 0.0045 18.3 5.6 20 119-138 3-22 (81)
50 3i00_A HIP-I, huntingtin-inter 23.2 1.6E+02 0.0055 19.2 8.7 49 84-141 14-62 (120)
51 1dd4_C 50S ribosomal protein L 23.2 53 0.0018 17.2 2.0 22 114-135 8-29 (40)
52 1zps_A PRA-CH, phosphoribosyl- 23.1 16 0.00056 24.7 -0.1 36 18-53 55-100 (138)
53 2wvr_A Geminin; DNA replicatio 22.9 64 0.0022 23.3 2.9 19 87-105 124-142 (209)
54 3fg8_A Uncharacterized protein 22.6 42 0.0015 20.4 1.8 30 36-66 16-45 (118)
55 2hq4_A Hypothetical protein PH 22.2 37 0.0013 23.0 1.4 25 47-71 135-159 (161)
56 3cob_A Kinesin heavy chain-lik 21.9 33 0.0011 27.1 1.4 33 28-60 64-101 (369)
57 1ez3_A Syntaxin-1A; three heli 21.8 1.6E+02 0.0055 18.6 7.2 59 86-144 13-72 (127)
58 1ryp_A 20S proteasome; multica 21.6 21 0.0007 26.1 0.1 15 42-56 4-18 (243)
59 2auv_A Potential NAD-reducing 21.5 43 0.0015 20.0 1.6 18 52-69 67-85 (85)
60 2kmm_A Guanosine-3',5'-BIS(dip 21.4 62 0.0021 18.4 2.3 25 45-69 3-28 (73)
61 2zkr_u 60S ribosomal protein L 21.2 62 0.0021 22.4 2.5 45 34-79 4-52 (157)
62 1q08_A Zn(II)-responsive regul 21.2 1.5E+02 0.005 17.9 6.1 19 127-145 40-58 (99)
63 1yar_A Proteasome alpha subuni 21.1 25 0.00085 25.4 0.5 17 40-56 7-23 (233)
64 2vlg_A Sporulation kinase A; h 21.0 50 0.0017 20.5 1.9 26 41-67 8-33 (111)
65 3t98_B Nucleoporin NUP58/NUP45 21.0 1.6E+02 0.0055 18.3 8.1 66 87-155 14-79 (93)
66 1dip_A Delta-sleep-inducing pe 20.9 1.2E+02 0.0041 18.2 3.4 28 84-111 14-41 (78)
67 1m1j_C Fibrinogen gamma chain; 20.8 3.2E+02 0.011 21.8 10.4 47 61-114 24-70 (409)
68 1hjb_A Ccaat/enhancer binding 20.7 1.4E+02 0.0048 18.3 3.9 22 87-108 45-66 (87)
69 3tnu_B Keratin, type II cytosk 20.5 1.8E+02 0.0063 18.8 6.7 59 87-147 45-103 (129)
70 1iru_E 20S proteasome; cell cy 20.5 23 0.00079 25.8 0.2 17 40-56 7-23 (241)
71 1ryp_C 20S proteasome; multica 20.5 23 0.00079 25.8 0.2 15 42-56 6-20 (244)
72 2wuj_A Septum site-determining 20.2 1.3E+02 0.0043 16.8 3.7 41 115-156 16-56 (57)
73 1t6f_A Geminin; coiled-coil, c 20.1 1E+02 0.0035 15.7 2.8 19 87-105 16-34 (37)
74 1iru_C 20S proteasome; cell cy 20.1 23 0.00079 26.2 0.1 17 40-56 4-20 (261)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=2.5e-41 Score=218.74 Aligned_cols=78 Identities=45% Similarity=0.745 Sum_probs=74.8
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHHhhhcccccccC
Q 031392 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGIN 79 (160)
Q Consensus 2 ~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~~~~~~~~ 79 (160)
||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+++.||+||...+++....
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~~ 78 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESR 78 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCEE
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988766543
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=3.2e-41 Score=213.35 Aligned_cols=74 Identities=47% Similarity=0.805 Sum_probs=70.2
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHHhhhcccc
Q 031392 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKD 75 (160)
Q Consensus 2 ~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~~~~ 75 (160)
||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+++.||+||...+++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999987654
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=4.6e-39 Score=211.51 Aligned_cols=72 Identities=43% Similarity=0.660 Sum_probs=70.0
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHHhhhc
Q 031392 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKK 72 (160)
Q Consensus 1 M~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~ 72 (160)
|||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||++..|+++|...
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~ 87 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR 87 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999653
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=5.2e-39 Score=208.72 Aligned_cols=71 Identities=37% Similarity=0.549 Sum_probs=68.9
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHHhhh
Q 031392 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK 71 (160)
Q Consensus 1 M~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~ 71 (160)
|||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||++..+|++|..
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G 80 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 80 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997743
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=3e-38 Score=208.94 Aligned_cols=69 Identities=38% Similarity=0.570 Sum_probs=67.8
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHHh
Q 031392 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERY 69 (160)
Q Consensus 1 M~R~ki~i~~I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY 69 (160)
|||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||++..||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999974
No 6
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=75.54 E-value=16 Score=24.67 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=35.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q 031392 113 GDGLEPCTIDELQQLENQLERSLSRIRARKNQLFR------EQIEKLKEKV 157 (160)
Q Consensus 113 g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~------~~~~~l~~k~ 157 (160)
.-+++++|.++|+++-..|-..+..+.+-|..+-. -+|+.|+.++
T Consensus 52 pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV 102 (133)
T 1j1d_C 52 PLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKI 102 (133)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHH
Confidence 35799999999999999999999999988876532 2466666655
No 7
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=75.02 E-value=11 Score=24.41 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=37.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHh
Q 031392 113 GDGLEPCTIDELQQLENQLERSLSRIRARKNQLFR------EQIEKLKEKVI 158 (160)
Q Consensus 113 g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~------~~~~~l~~k~~ 158 (160)
.-++++||.++|+++-..|-..+..+.+-|..+-. -+|+.|+.++.
T Consensus 36 pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~ 87 (107)
T 1ytz_T 36 PLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRID 87 (107)
T ss_dssp CCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH
Confidence 35789999999999999999999999998877633 26777777664
No 8
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=74.01 E-value=11 Score=24.41 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHh
Q 031392 115 GLEPCTIDELQQLENQLERSLSRIRARKNQLFR------EQIEKLKEKVI 158 (160)
Q Consensus 115 ~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~------~~~~~l~~k~~ 158 (160)
++++||.++|+++-..|-..+..+.+-|..+-. -+|..|+.++.
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~ 87 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIN 87 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHH
Confidence 789999999999999999999999998877633 26777776664
No 9
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=71.36 E-value=0.7 Score=30.02 Aligned_cols=50 Identities=18% Similarity=0.313 Sum_probs=36.1
Q ss_pred ecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHH
Q 031392 11 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIE 67 (160)
Q Consensus 11 I~~~~~R~~tf~kR~~gl~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~ 67 (160)
|.++.....||.-.-..|.++.-+||.+| ++.|+|.|+-|. ...+++.|.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~--ldTVde~L~ 70 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFR--LDTVDEELT 70 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEE--EEEECGGGG
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEE--ecccchhhh
Confidence 34555566777778888999999999777 999999998553 333444443
No 10
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=59.40 E-value=39 Score=23.02 Aligned_cols=67 Identities=12% Similarity=0.239 Sum_probs=42.2
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHh---------------hCC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 87 SQHAKEETSNMMTKLEFLEVAKRKL---------------LGD--------GLEPCTIDELQQLENQLERSLSRIRARKN 143 (160)
Q Consensus 87 ~e~l~~e~~kl~~~~~~l~~~~r~~---------------~g~--------~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~ 143 (160)
...+-.+..+++++++.++.++... .|. +-+-+..+|...|+..|-.+++....+-+
T Consensus 43 m~~mmkQAQkmQ~km~k~QeeL~~~eveg~sGgGlVkVtvnG~~ev~~I~Idp~lldpeD~E~LeDLI~aAvNdA~~ka~ 122 (143)
T 1ybx_A 43 INNLVKQAQKMQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRKAD 122 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777777666541 121 22235556777778888888888887777
Q ss_pred HHHHHHHHHH
Q 031392 144 QLFREQIEKL 153 (160)
Q Consensus 144 ~ll~~~~~~l 153 (160)
+...+.+..+
T Consensus 123 e~~~e~M~~l 132 (143)
T 1ybx_A 123 EMVTAEISKI 132 (143)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666554
No 11
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=57.55 E-value=7 Score=27.35 Aligned_cols=36 Identities=17% Similarity=0.504 Sum_probs=26.1
Q ss_pred hcccCcceeeeeecCCCCccc-cccc-------chhhHHHHhhh
Q 031392 36 SVLCDAEVALIIFSPRGKLYE-FSSC-------SINKTIERYQK 71 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~gk~~~-~~s~-------~~~~il~RY~~ 71 (160)
+.-|++.|-+++|||+.+.|. |... .+.+|++.++.
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~ 159 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQ 159 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 456999999999999988775 5443 35556665554
No 12
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=57.41 E-value=48 Score=23.47 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=35.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Q 031392 113 GDGLEPCTIDELQQLENQLERSLSRIRARKNQLFR------EQIEKLKEKV 157 (160)
Q Consensus 113 g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~------~~~~~l~~k~ 157 (160)
.-++++||.++|+++-..|-..+..+.+-+..+-. -+|+.|+.++
T Consensus 52 PLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV 102 (180)
T 1j1e_C 52 PLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKI 102 (180)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 35789999999999999999999999888877633 2466666655
No 13
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=56.99 E-value=6.2 Score=25.35 Aligned_cols=32 Identities=16% Similarity=0.357 Sum_probs=22.6
Q ss_pred cCcceeeeeecCCCCccccccc-chhhHHHHhhh
Q 031392 39 CDAEVALIIFSPRGKLYEFSSC-SINKTIERYQK 71 (160)
Q Consensus 39 C~~~v~~iv~s~~gk~~~~~s~-~~~~il~RY~~ 71 (160)
|+---.++|+ |+|..|...+| .+.+||+.+..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 5444445555 88877777776 79999999754
No 14
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=55.29 E-value=12 Score=23.95 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=17.3
Q ss_pred hhhHHHHHHhhhhhHHHHHHHHHHH
Q 031392 86 HSQHAKEETSNMMTKLEFLEVAKRK 110 (160)
Q Consensus 86 ~~e~l~~e~~kl~~~~~~l~~~~r~ 110 (160)
.++.|..+..+|+++++.++..+-+
T Consensus 20 ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 20 KVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777777766644
No 15
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=54.88 E-value=41 Score=21.83 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=41.0
Q ss_pred hhhHHHHHHhhhhhHHHHHHHHHHHh--hCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 86 HSQHAKEETSNMMTKLEFLEVAKRKL--LGDGLEPCTIDELQQLENQLERSLSRIRARKNQ 144 (160)
Q Consensus 86 ~~e~l~~e~~kl~~~~~~l~~~~r~~--~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ 144 (160)
..+.|..++.+|+-+|..|....+.- .+.+-.-|+..+=+.+....-.+|...-++|-+
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~KIe 69 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRKIE 69 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888887665442 224566799999999988888888877777643
No 16
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=47.83 E-value=29 Score=18.17 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 117 EPCTIDELQQLENQLERSLSRIRARKN 143 (160)
Q Consensus 117 ~~Ls~~eL~~Le~~Le~~l~~Vr~RK~ 143 (160)
+++|.++|-.||..|+..-+....-|.
T Consensus 15 egfspeelaaleselqalekklaalks 41 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALKS 41 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999887766555544443
No 17
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=44.66 E-value=1.1 Score=27.57 Aligned_cols=30 Identities=40% Similarity=0.661 Sum_probs=19.1
Q ss_pred eeeeeecCCCCcccccccchhhHHHHhhhccc
Q 031392 43 VALIIFSPRGKLYEFSSCSINKTIERYQKKTK 74 (160)
Q Consensus 43 v~~iv~s~~gk~~~~~s~~~~~il~RY~~~~~ 74 (160)
||+|||+| ++++..+.. +-..+..|++...
T Consensus 16 VaLlvfGp-kkLP~l~r~-lGk~ir~fK~~~~ 45 (78)
T 2l16_A 16 IALIIFGP-SKLPEIGRA-AGRTLLEFKSATK 45 (78)
T ss_dssp HHHHHSCT-TTHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHhheeCc-cHhHHHHHH-HHHHHHHHHHHHH
Confidence 78999999 466655443 4555666665443
No 18
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=40.61 E-value=1.8e+02 Score=26.66 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=30.6
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 031392 111 LLGDGLEPCTIDELQQLENQLERSLSRIRARK----NQLFREQIEKLKEK 156 (160)
Q Consensus 111 ~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK----~~ll~~~~~~l~~k 156 (160)
+++.+|-.|+-.+...|....+.....+..=+ .+|+.+.++.+.++
T Consensus 1116 IL~MrL~~LT~ee~ekL~~E~~e~~~ei~~L~~~s~~~lw~~DLd~~~~~ 1165 (1177)
T 4gfh_A 1116 LLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVG 1165 (1177)
T ss_dssp HHSSBGGGGSHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 44556667788888888888888777776543 24566666666543
No 19
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=39.98 E-value=23 Score=21.50 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=27.0
Q ss_pred hhhhhhhhcccCcceeeeeecCCCCcccccccchhhHHHHhhhccc
Q 031392 29 LKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTK 74 (160)
Q Consensus 29 ~KKa~ELs~LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~~~~~ 74 (160)
.|+|.|.+.+++=|.|++.|. ++..-|++|.....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~-----------g~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ-----------GVLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH-----------HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcChHHHHHHHH-----------HHHHHHHHHHHhcC
Confidence 588999999999888887665 35667788877553
No 20
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=38.78 E-value=40 Score=17.07 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=12.2
Q ss_pred HHHHHhhhhhHHHHHHHHHH
Q 031392 90 AKEETSNMMTKLEFLEVAKR 109 (160)
Q Consensus 90 l~~e~~kl~~~~~~l~~~~r 109 (160)
.+.+++.+++++..|+...|
T Consensus 12 ~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHH
Confidence 45566666666666665544
No 21
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=38.49 E-value=7.3 Score=18.19 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=8.2
Q ss_pred CCcccccccccc
Q 031392 15 TSRQVTFSKRRN 26 (160)
Q Consensus 15 ~~R~~tf~kR~~ 26 (160)
+.|++.|.+|++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 457777777764
No 22
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=36.39 E-value=85 Score=20.20 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=38.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHh---------------hCC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 90 AKEETSNMMTKLEFLEVAKRKL---------------LGD--------GLEPCTIDELQQLENQLERSLSRIRARKNQLF 146 (160)
Q Consensus 90 l~~e~~kl~~~~~~l~~~~r~~---------------~g~--------~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll 146 (160)
+-.+..+++++++.++.++... .|. +.+-+. +|...|+..|-.+++....+-.+..
T Consensus 13 mmkqaq~mQ~~m~~~QeeL~~~~v~g~sggG~V~Vt~~G~~ev~~i~Idp~~~~-~d~E~LedlI~aA~ndA~~ka~~~~ 91 (112)
T 1j8b_A 13 LMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLME-DDKEMLEDLIAAAFNDAVRRAEELQ 91 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGG-SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccEEEEEECCCEEEEEEecCceEEEEEECHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666441 121 112234 6667777778888888777777776
Q ss_pred HHHHHHH
Q 031392 147 REQIEKL 153 (160)
Q Consensus 147 ~~~~~~l 153 (160)
.+.+..+
T Consensus 92 ~e~m~~~ 98 (112)
T 1j8b_A 92 KEKMASV 98 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 23
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=36.14 E-value=7.5 Score=29.62 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=16.0
Q ss_pred hcccCcceeeeeecCCCCccc
Q 031392 36 SVLCDAEVALIIFSPRGKLYE 56 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~gk~~~ 56 (160)
|+-.|-|-.+-+|||.|++|.
T Consensus 3 ~~~~~yd~~~t~fSP~Grl~Q 23 (288)
T 3nzj_F 3 SIGTGYDLSNSVFSPDGRNFQ 23 (288)
T ss_dssp --CCCTTSSTTCCCTTSCCHH
T ss_pred CCcCCccCCcccCCCCCchHH
Confidence 345567888899999999986
No 24
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.62 E-value=58 Score=18.07 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=15.7
Q ss_pred hhhhHHHHHHhhhhhHHHHHHHHH
Q 031392 85 DHSQHAKEETSNMMTKLEFLEVAK 108 (160)
Q Consensus 85 ~~~e~l~~e~~kl~~~~~~l~~~~ 108 (160)
.+++.|+.++..|+.+++.+...+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777776666543
No 25
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=34.43 E-value=23 Score=21.35 Aligned_cols=23 Identities=13% Similarity=0.411 Sum_probs=17.6
Q ss_pred eeeecCCCCccccccc-chhhHHH
Q 031392 45 LIIFSPRGKLYEFSSC-SINKTIE 67 (160)
Q Consensus 45 ~iv~s~~gk~~~~~s~-~~~~il~ 67 (160)
+.||.|+|..++++.. .+.++..
T Consensus 8 i~v~tP~G~~~~lp~GaT~~D~A~ 31 (78)
T 3hvz_A 8 VFVFTPKGDVISLPIGSTVIDFAY 31 (78)
T ss_dssp EEEECTTSCEEEEETTCBHHHHHH
T ss_pred EEEECCCCCEEEecCCCCHHHHHH
Confidence 6789999999998875 5555543
No 26
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=33.41 E-value=2.7e+02 Score=25.18 Aligned_cols=10 Identities=40% Similarity=0.517 Sum_probs=0.0
Q ss_pred cchhhhhhhh
Q 031392 26 NGLLKKAFEL 35 (160)
Q Consensus 26 ~gl~KKa~EL 35 (160)
.+|-+|..||
T Consensus 924 ~~LE~kl~eL 933 (1080)
T 2dfs_A 924 IGLENKIMQL 933 (1080)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 27
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=32.66 E-value=20 Score=25.25 Aligned_cols=33 Identities=6% Similarity=0.035 Sum_probs=25.9
Q ss_pred ccCcceeeeeecCCCCcccccccchhhHHHHhh
Q 031392 38 LCDAEVALIIFSPRGKLYEFSSCSINKTIERYQ 70 (160)
Q Consensus 38 LC~~~v~~iv~s~~gk~~~~~s~~~~~il~RY~ 70 (160)
..++.+++|||||+=-...||-..+..|+++..
T Consensus 60 Ie~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~ 92 (176)
T 3jrn_A 60 IEVSRFAVVVVSENYAASSWCLDELVTIMDFEK 92 (176)
T ss_dssp CTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCEEEEEecCCcCCChhHHHHHHHHHhhhc
Confidence 467889999999986555677778888888754
No 28
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=31.47 E-value=11 Score=24.67 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=11.4
Q ss_pred hhhhcccCcceeee
Q 031392 33 FELSVLCDAEVALI 46 (160)
Q Consensus 33 ~ELs~LC~~~v~~i 46 (160)
..+.+|||++|-.-
T Consensus 30 ~~ftaLCG~~VTp~ 43 (116)
T 3rmq_A 30 RPFTALCGETVTPQ 43 (116)
T ss_dssp CCEECTTSCEECCC
T ss_pred CccccccCCeecCC
Confidence 57899999998754
No 29
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=30.37 E-value=1.5e+02 Score=21.11 Aligned_cols=6 Identities=50% Similarity=0.689 Sum_probs=2.7
Q ss_pred cccccc
Q 031392 55 YEFSSC 60 (160)
Q Consensus 55 ~~~~s~ 60 (160)
+.|+||
T Consensus 3 ~~f~s~ 8 (189)
T 2v71_A 3 MDFSSL 8 (189)
T ss_dssp -CCSSH
T ss_pred CCCCCH
Confidence 345555
No 30
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=30.30 E-value=13 Score=27.46 Aligned_cols=20 Identities=20% Similarity=0.542 Sum_probs=15.3
Q ss_pred cccCcceeeeeecCCCCccc
Q 031392 37 VLCDAEVALIIFSPRGKLYE 56 (160)
Q Consensus 37 ~LC~~~v~~iv~s~~gk~~~ 56 (160)
+-.+=|-++-+|||.|++|.
T Consensus 3 ~~~~yd~~~t~fsp~Grl~Q 22 (254)
T 1iru_G 3 IGTGYDLSASTFSPDGRVFQ 22 (254)
T ss_dssp CCSSTTSCTTCCCTTSCCHH
T ss_pred cccccCCCCccCCcCCccHH
Confidence 34456777889999999885
No 31
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=29.15 E-value=14 Score=27.59 Aligned_cols=17 Identities=41% Similarity=0.899 Sum_probs=10.9
Q ss_pred CcceeeeeecCCCCccc
Q 031392 40 DAEVALIIFSPRGKLYE 56 (160)
Q Consensus 40 ~~~v~~iv~s~~gk~~~ 56 (160)
+-|-++-+|||.|++|.
T Consensus 11 ~yd~~~t~fSp~Grl~Q 27 (264)
T 3h4p_A 11 AYDRAITVFSPEGRLYQ 27 (264)
T ss_dssp -----CCCCCSSSSCHH
T ss_pred ccCCCcceECCCCeeHH
Confidence 45778889999999985
No 32
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=28.82 E-value=91 Score=18.45 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q 031392 118 PCTIDELQQLENQLERSLSRIRARK 142 (160)
Q Consensus 118 ~Ls~~eL~~Le~~Le~~l~~Vr~RK 142 (160)
.|+.+++.++.+.|...|-+||.|-
T Consensus 3 ~ls~~~~e~ir~IL~~NLykiRqr~ 27 (70)
T 2ygg_A 3 ALSKDKEEEIRKILRNNLQKTRQRL 27 (70)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 3788999999999999999999774
No 33
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=28.62 E-value=1.6e+02 Score=20.86 Aligned_cols=44 Identities=20% Similarity=0.349 Sum_probs=34.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Q 031392 113 GDGLEPCTIDELQQLENQLERSLSRIRARKNQLFRE------QIEKLKEKV 157 (160)
Q Consensus 113 g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~~------~~~~l~~k~ 157 (160)
.-++++ |.++|+++-..|...+..+.+-+..+-.. +|+.|+.++
T Consensus 50 PLnid~-se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV 99 (182)
T 1ytz_I 50 PLSLPG-SMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKL 99 (182)
T ss_dssp CCCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHH
Confidence 357889 99999999999999999999988776432 455555443
No 34
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=28.57 E-value=9.3 Score=28.74 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=21.6
Q ss_pred hhhcccCcceeeeeecCCCCccccccc
Q 031392 34 ELSVLCDAEVALIIFSPRGKLYEFSSC 60 (160)
Q Consensus 34 ELs~LC~~~v~~iv~s~~gk~~~~~s~ 60 (160)
+|.-.+|++|+|||+.+.|+++..+.+
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g~~ 164 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRGVV 164 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhccCc
Confidence 344668999999999999988776664
No 35
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=27.34 E-value=14 Score=26.95 Aligned_cols=14 Identities=36% Similarity=0.838 Sum_probs=10.9
Q ss_pred eeeeeecCCCCccc
Q 031392 43 VALIIFSPRGKLYE 56 (160)
Q Consensus 43 v~~iv~s~~gk~~~ 56 (160)
-++-+|||.|++|.
T Consensus 2 ~~~t~fsp~Grl~Q 15 (242)
T 1ryp_E 2 RGVSTFSPEGRLFQ 15 (242)
T ss_dssp CCTTCBCTTSCBHH
T ss_pred CCCceECCCCcChH
Confidence 34568999999875
No 36
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=27.13 E-value=79 Score=17.21 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=15.0
Q ss_pred hCCCCCCCCHHHHHHHHHHHHH
Q 031392 112 LGDGLEPCTIDELQQLENQLER 133 (160)
Q Consensus 112 ~g~~l~~Ls~~eL~~Le~~Le~ 133 (160)
+|++-++||-++|..-+..|+.
T Consensus 3 ~~~n~~gls~eqlehrerslqt 24 (55)
T 3sl9_C 3 LGENPDGLSQEQLEHRERSLQT 24 (55)
T ss_dssp ----CCCCCHHHHHHHHHHHHH
T ss_pred cccCCcccCHHHHHHHHHHHHH
Confidence 5788899999999888777654
No 37
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=26.66 E-value=31 Score=23.90 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=25.7
Q ss_pred hhhcccCccee----eeeecCCCCcccccccchhhHHHHhhhccccccc
Q 031392 34 ELSVLCDAEVA----LIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGI 78 (160)
Q Consensus 34 ELs~LC~~~v~----~iv~s~~gk~~~~~s~~~~~il~RY~~~~~~~~~ 78 (160)
|+|.-||.+|- .+..-.+|++|.|+|+--.... .....|....|
T Consensus 6 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f-~~krnPRkl~W 53 (158)
T 4a17_T 6 GTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLS-LRKVKAQKITW 53 (158)
T ss_dssp EECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHHH-HHTCCGGGSTT
T ss_pred EEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHHH-HcccCcccchh
Confidence 55667776652 2333357899999998444432 34444555444
No 38
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=26.57 E-value=16 Score=26.65 Aligned_cols=15 Identities=47% Similarity=0.946 Sum_probs=12.2
Q ss_pred ceeeeeecCCCCccc
Q 031392 42 EVALIIFSPRGKLYE 56 (160)
Q Consensus 42 ~v~~iv~s~~gk~~~ 56 (160)
|-++-+|||+|++|.
T Consensus 3 d~~~t~fsp~Grl~Q 17 (241)
T 1ryp_D 3 DRALSIFSPDGHIFQ 17 (241)
T ss_dssp CCCCSCCBTTTBCHH
T ss_pred CCCceeECCCCcchH
Confidence 456779999999885
No 39
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.28 E-value=80 Score=16.72 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 119 CTIDELQQLENQLERSLSRIRARKNQL 145 (160)
Q Consensus 119 Ls~~eL~~Le~~Le~~l~~Vr~RK~~l 145 (160)
+|-+||.+=-..++.-+..++++...+
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte~kI~~l 28 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVEQQISKL 28 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666655544
No 40
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.08 E-value=51 Score=21.27 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=27.2
Q ss_pred hhhhccc--------CcceeeeeecCCCCcccccc---cchhhHHHHhhhccc
Q 031392 33 FELSVLC--------DAEVALIIFSPRGKLYEFSS---CSINKTIERYQKKTK 74 (160)
Q Consensus 33 ~ELs~LC--------~~~v~~iv~s~~gk~~~~~s---~~~~~il~RY~~~~~ 74 (160)
+=||+.+ .+.-..|...++|..+.... +++.++|+-|...+.
T Consensus 52 y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~eLV~~y~~~~~ 104 (125)
T 2dm0_A 52 YTISVFMGARRSTEAAIKHYQIKKNDSGQWYVAERHAFQSIPELIWYHQHNAA 104 (125)
T ss_dssp EEEEEECCCSSSSSCCEEEEEEEECTTCCEESSSSCCCSSHHHHHHHHTTCCC
T ss_pred EEEEEEeccccCCCCcEEEEEEEEcCCCCEEECCCCccCCHHHHHHHhhhCCC
Confidence 4567766 34455555566776554332 489999999987653
No 41
>2k1v_A Insulin-like peptide INSL5; peptide hormone, relaxin-3, chimera, cleavage on PAIR of basic residues, secreted, signaling protein; HET: PCA; NMR {Synthetic} PDB: 2kbc_A*
Probab=25.91 E-value=21 Score=16.90 Aligned_cols=9 Identities=44% Similarity=0.818 Sum_probs=6.7
Q ss_pred hhhhhcccC
Q 031392 32 AFELSVLCD 40 (160)
Q Consensus 32 a~ELs~LC~ 40 (160)
-+|||.||.
T Consensus 14 msDLs~lC~ 22 (26)
T 2k1v_A 14 MTDLSALCX 22 (26)
T ss_dssp HHHHTTTC-
T ss_pred HHHHHHHHh
Confidence 368999995
No 42
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=25.80 E-value=89 Score=17.29 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=11.7
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 031392 116 LEPCTIDELQQLENQLERS 134 (160)
Q Consensus 116 l~~Ls~~eL~~Le~~Le~~ 134 (160)
+..+|.+||+..-..|+..
T Consensus 7 Lk~ls~eEL~~rl~~Ld~~ 25 (51)
T 2jo8_A 7 LKSWTVEDLQKRLLALDPM 25 (51)
T ss_dssp GGGSCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHccHH
Confidence 4567888887755444443
No 43
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.38 E-value=78 Score=16.28 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=10.7
Q ss_pred hHHHHHHhhhhhHHHHHHHH
Q 031392 88 QHAKEETSNMMTKLEFLEVA 107 (160)
Q Consensus 88 e~l~~e~~kl~~~~~~l~~~ 107 (160)
+.-+.++.++..+++.++.+
T Consensus 11 eEtkeQi~~l~~kl~~LkeE 30 (38)
T 2l5g_A 11 EETKEQILKLEEKLLALQEE 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544
No 44
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=25.13 E-value=18 Score=26.54 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=13.5
Q ss_pred CcceeeeeecCCCCccc
Q 031392 40 DAEVALIIFSPRGKLYE 56 (160)
Q Consensus 40 ~~~v~~iv~s~~gk~~~ 56 (160)
+-|-++-+|||+|++|.
T Consensus 4 ~yd~~~t~fsp~Grl~Q 20 (250)
T 1ryp_B 4 RYSFSLTTFSPSGKLGQ 20 (250)
T ss_dssp CCCSBSSCBCTTSCBHH
T ss_pred cccCCceeECCCCccHH
Confidence 34667789999999885
No 45
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=24.42 E-value=19 Score=26.05 Aligned_cols=16 Identities=44% Similarity=0.688 Sum_probs=13.0
Q ss_pred cceeeeeecCCCCccc
Q 031392 41 AEVALIIFSPRGKLYE 56 (160)
Q Consensus 41 ~~v~~iv~s~~gk~~~ 56 (160)
-|-.+-+|||+|++|.
T Consensus 5 yd~~~t~fsp~Grl~Q 20 (233)
T 1iru_B 5 YSFSLTTFSPSGKLVQ 20 (233)
T ss_dssp CCSBSCCCCTTSCCHH
T ss_pred ccCCceeECCCCeEeh
Confidence 4567789999999885
No 46
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=24.07 E-value=63 Score=20.22 Aligned_cols=34 Identities=24% Similarity=0.164 Sum_probs=22.1
Q ss_pred cceeeeeecCCCCcccccc---cchhhHHHHhhhccc
Q 031392 41 AEVALIIFSPRGKLYEFSS---CSINKTIERYQKKTK 74 (160)
Q Consensus 41 ~~v~~iv~s~~gk~~~~~s---~~~~~il~RY~~~~~ 74 (160)
+.-..|...++|..+.... +++.++|+-|...+.
T Consensus 63 v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~~y~~~~~ 99 (110)
T 2ekx_A 63 VKHYHVHTNAENKLYLAENYCFDSIPKLIHYHQHNSA 99 (110)
T ss_dssp CEEEECEECTTCCEESSTTCCCSCHHHHHHHHHHSCC
T ss_pred EEEEEEEECCCCCEEECCCCccCCHHHHHHHHeeCCC
Confidence 4444555556676554333 489999999988763
No 47
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=23.74 E-value=1e+02 Score=16.94 Aligned_cols=29 Identities=34% Similarity=0.646 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 122 DELQQLENQLERSLSRIRARKNQLFREQIEKLKEKV 157 (160)
Q Consensus 122 ~eL~~Le~~Le~~l~~Vr~RK~~ll~~~~~~l~~k~ 157 (160)
++|..||.+. -.=|++++.+.+.+++++.
T Consensus 13 d~l~~LEkqF-------~~LkEqlY~ERl~ql~~~L 41 (49)
T 2xus_A 13 SEMLDLEKQF-------SELKEKLFRERLSQLRLRL 41 (49)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4555555433 3345666777777766654
No 48
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=23.62 E-value=20 Score=26.31 Aligned_cols=15 Identities=40% Similarity=0.953 Sum_probs=11.9
Q ss_pred ceeeeeecCCCCccc
Q 031392 42 EVALIIFSPRGKLYE 56 (160)
Q Consensus 42 ~v~~iv~s~~gk~~~ 56 (160)
|-.+-+|||.|++|.
T Consensus 4 d~~~t~fsp~Grl~Q 18 (248)
T 1iru_D 4 DRAITVFSPDGHLFQ 18 (248)
T ss_dssp CCCCSCCCTTSCCHH
T ss_pred cCCCceECCCCcchH
Confidence 455678999999885
No 49
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.53 E-value=1.3e+02 Score=18.29 Aligned_cols=20 Identities=15% Similarity=0.524 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 031392 119 CTIDELQQLENQLERSLSRI 138 (160)
Q Consensus 119 Ls~~eL~~Le~~Le~~l~~V 138 (160)
+|++=|..||..++.++..|
T Consensus 3 MS~ElleqLE~KIq~avdtI 22 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI 22 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555543
No 50
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=23.23 E-value=1.6e+02 Score=19.20 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=33.2
Q ss_pred hhhhhHHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 031392 84 EDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRAR 141 (160)
Q Consensus 84 ~~~~e~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~R 141 (160)
+..|+.|+.++..|+.+++.+..+.+.+ +.+|..=...|+.-|..-+.-
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~---------v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRV---------VLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 3458889999999999999988777664 445555455555555554433
No 51
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=23.22 E-value=53 Score=17.16 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=17.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q 031392 114 DGLEPCTIDELQQLENQLERSL 135 (160)
Q Consensus 114 ~~l~~Ls~~eL~~Le~~Le~~l 135 (160)
+.+.+||+-|+.+|.+.|+...
T Consensus 8 e~i~~lTvlE~~eLvk~leekf 29 (40)
T 1dd4_C 8 EAIEKLTVSELAELVKKLEDKF 29 (40)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHhCcHHHHHHHHHHHHHHH
Confidence 3467889999999999988753
No 52
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=23.07 E-value=16 Score=24.74 Aligned_cols=36 Identities=19% Similarity=0.443 Sum_probs=27.0
Q ss_pred cccc-cccccch---------hhhhhhhhcccCcceeeeeecCCCC
Q 031392 18 QVTF-SKRRNGL---------LKKAFELSVLCDAEVALIIFSPRGK 53 (160)
Q Consensus 18 ~~tf-~kR~~gl---------~KKa~ELs~LC~~~v~~iv~s~~gk 53 (160)
.+|| |+=|+.| +-+..|+.+-||.|+-++..-|.|.
T Consensus 55 ~~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~LL~~V~q~G~ 100 (138)
T 1zps_A 55 TAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQEGG 100 (138)
T ss_dssp BCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEEEESSC
T ss_pred cEEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEEEEEEEecCC
Confidence 4444 6656655 4456799999999999999988773
No 53
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.90 E-value=64 Score=23.30 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=10.4
Q ss_pred hhHHHHHHhhhhhHHHHHH
Q 031392 87 SQHAKEETSNMMTKLEFLE 105 (160)
Q Consensus 87 ~e~l~~e~~kl~~~~~~l~ 105 (160)
++.++.++..|+++++.+.
T Consensus 124 ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 124 IEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555556655555554
No 54
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=22.59 E-value=42 Score=20.38 Aligned_cols=30 Identities=0% Similarity=0.174 Sum_probs=22.4
Q ss_pred hcccCcceeeeeecCCCCcccccccchhhHH
Q 031392 36 SVLCDAEVALIIFSPRGKLYEFSSCSINKTI 66 (160)
Q Consensus 36 s~LC~~~v~~iv~s~~gk~~~~~s~~~~~il 66 (160)
+++..+..++++++++|.. .|.++.+..++
T Consensus 16 ~il~~~~~~i~~~D~~g~i-~~~N~a~~~l~ 45 (118)
T 3fg8_A 16 NLYFQGGLGFMALDEDLRI-IYVNSGCLRHV 45 (118)
T ss_dssp CSSSCTTCEEEEECTTCBE-EEECHHHHHHH
T ss_pred HHHhhCCceEEEECCCCeE-EEECHHHHHHh
Confidence 5788889999999998865 46666555444
No 55
>2hq4_A Hypothetical protein PH1570; singleton protein, structural genomics, PSI southeast collaboratory for structural genomics, secsg; 1.99A {Pyrococcus horikoshii} SCOP: d.342.1.1
Probab=22.17 E-value=37 Score=22.97 Aligned_cols=25 Identities=40% Similarity=0.700 Sum_probs=20.8
Q ss_pred eecCCCCcccccccchhhHHHHhhh
Q 031392 47 IFSPRGKLYEFSSCSINKTIERYQK 71 (160)
Q Consensus 47 v~s~~gk~~~~~s~~~~~il~RY~~ 71 (160)
+..|.|.+|.|.-|++.+.|-+|.-
T Consensus 135 ilD~kg~LfvFNKPs~~e~ilKYi~ 159 (161)
T 2hq4_A 135 ILDPRGRLFIFNKPSIANKILKYIW 159 (161)
T ss_dssp EECTTSEEEEESSTTHHHHHHTTTT
T ss_pred EECCCceEEEecCccHHHHHHHHHh
Confidence 4457789999999999999988863
No 56
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=21.93 E-value=33 Score=27.09 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=23.5
Q ss_pred hhhhhhhh--hcccCcceeeeeecCC--CCccc-cccc
Q 031392 28 LLKKAFEL--SVLCDAEVALIIFSPR--GKLYE-FSSC 60 (160)
Q Consensus 28 l~KKa~EL--s~LC~~~v~~iv~s~~--gk~~~-~~s~ 60 (160)
+|..+..| ++|-|..+|++.|+.+ ||.|+ ++++
T Consensus 64 Vy~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~ 101 (369)
T 3cob_A 64 VFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGAD 101 (369)
T ss_dssp HHHTTTHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCS
T ss_pred ehhhhhhhhHhhhcCCceEEEEECCCCCCCeEeecCCC
Confidence 34444444 6789999999999975 58887 5554
No 57
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=21.76 E-value=1.6e+02 Score=18.63 Aligned_cols=59 Identities=12% Similarity=0.279 Sum_probs=29.7
Q ss_pred hhhHHHHHHhhhhhHHHHHHHHHHHhhCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 86 HSQHAKEETSNMMTKLEFLEVAKRKLLGD-GLEPCTIDELQQLENQLERSLSRIRARKNQ 144 (160)
Q Consensus 86 ~~e~l~~e~~kl~~~~~~l~~~~r~~~g~-~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ 144 (160)
.++..+..+..+...++.+...+...+.. +.+.-.-.+|..+...+-..-..|+.+-..
T Consensus 13 ~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~ 72 (127)
T 1ez3_A 13 QVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKS 72 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677777776666666655544332 211111224444555444545555544443
No 58
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=21.64 E-value=21 Score=26.10 Aligned_cols=15 Identities=47% Similarity=1.023 Sum_probs=12.1
Q ss_pred ceeeeeecCCCCccc
Q 031392 42 EVALIIFSPRGKLYE 56 (160)
Q Consensus 42 ~v~~iv~s~~gk~~~ 56 (160)
|-.+-+|||.|++|.
T Consensus 4 d~~~t~fsp~Grl~Q 18 (243)
T 1ryp_A 4 DRHITIFSPEGRLYQ 18 (243)
T ss_dssp GGTSSSCCTTSCCHH
T ss_pred CCCCceECCCCeeHH
Confidence 556678999999885
No 59
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=21.52 E-value=43 Score=20.02 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=10.7
Q ss_pred CCccccccc-chhhHHHHh
Q 031392 52 GKLYEFSSC-SINKTIERY 69 (160)
Q Consensus 52 gk~~~~~s~-~~~~il~RY 69 (160)
|..|...+| .+.+|++.|
T Consensus 67 ~~~y~~vt~e~v~~il~~~ 85 (85)
T 2auv_A 67 EKVYGNVTPGQVKKILAEY 85 (85)
T ss_dssp GGCCCCSSSSHHHHHHHHC
T ss_pred CEEECCCCHHHHHHHHHhC
Confidence 455555555 577777654
No 60
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=21.43 E-value=62 Score=18.36 Aligned_cols=25 Identities=12% Similarity=0.375 Sum_probs=18.7
Q ss_pred eeeecCCCCccccccc-chhhHHHHh
Q 031392 45 LIIFSPRGKLYEFSSC-SINKTIERY 69 (160)
Q Consensus 45 ~iv~s~~gk~~~~~s~-~~~~il~RY 69 (160)
+.|+-|+|+.++|+.+ ++.+++..+
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSL 28 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHH
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHH
Confidence 4567789998888874 677777766
No 61
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.22 E-value=62 Score=22.39 Aligned_cols=45 Identities=13% Similarity=0.243 Sum_probs=26.0
Q ss_pred hhhcccCcce----eeeeecCCCCcccccccchhhHHHHhhhcccccccC
Q 031392 34 ELSVLCDAEV----ALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGIN 79 (160)
Q Consensus 34 ELs~LC~~~v----~~iv~s~~gk~~~~~s~~~~~il~RY~~~~~~~~~~ 79 (160)
|+|.-||..| +.+..-.+|++|.|+|+--... -.....|....|.
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~-f~~krnPRKl~WT 52 (157)
T 2zkr_u 4 ELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESA-FLSKRNPRQINWT 52 (157)
T ss_dssp CBCTTTCCBCCTTCCEEEECTTSCEEEESSHHHHHH-HHTTCCTTTCTTC
T ss_pred eeecCcCCcccCCCceEEEeeCCcEEEEecHHHHHH-HHccCCcccchhH
Confidence 5677777665 2222235789999999844433 2334445555553
No 62
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=21.17 E-value=1.5e+02 Score=17.89 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031392 127 LENQLERSLSRIRARKNQL 145 (160)
Q Consensus 127 Le~~Le~~l~~Vr~RK~~l 145 (160)
+...|+..+..|..+..+|
T Consensus 40 ~~~~L~~~~~~l~~~i~~L 58 (99)
T 1q08_A 40 SKGIVQERLQEVEARIAEL 58 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444
No 63
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=21.06 E-value=25 Score=25.44 Aligned_cols=17 Identities=35% Similarity=0.784 Sum_probs=9.8
Q ss_pred CcceeeeeecCCCCccc
Q 031392 40 DAEVALIIFSPRGKLYE 56 (160)
Q Consensus 40 ~~~v~~iv~s~~gk~~~ 56 (160)
+=|-.+-+|||.|++|.
T Consensus 7 ~yd~~~t~fsp~Grl~Q 23 (233)
T 1yar_A 7 AYSRAITVFSPDGRLFQ 23 (233)
T ss_dssp ------CCCCTTSCCHH
T ss_pred cCCCCCceECcCCeeHH
Confidence 34667788999999885
No 64
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=20.98 E-value=50 Score=20.53 Aligned_cols=26 Identities=8% Similarity=0.148 Sum_probs=16.9
Q ss_pred cceeeeeecCCCCcccccccchhhHHH
Q 031392 41 AEVALIIFSPRGKLYEFSSCSINKTIE 67 (160)
Q Consensus 41 ~~v~~iv~s~~gk~~~~~s~~~~~il~ 67 (160)
+.-++++.+++|. +.|.||++..++.
T Consensus 8 ~~d~i~v~d~~G~-i~yvn~~~~~~lG 33 (111)
T 2vlg_A 8 KTDIHAVLASNGR-IIYISANSKLHLG 33 (111)
T ss_dssp -CCEEEEECTTSB-EEEECTTHHHHHS
T ss_pred CCCEEEEEcCCCe-EEEEChHHHHHhC
Confidence 4446677788885 5688887766543
No 65
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=20.97 E-value=1.6e+02 Score=18.30 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=41.3
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 87 SQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKE 155 (160)
Q Consensus 87 ~e~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~~~~~~l~~ 155 (160)
+.....++...+..|+.++..+.-+- .-..+|+.+|...-+.+....-.+-+|-.++ .++++.++.
T Consensus 14 v~~fe~rL~~Yr~~IeelE~~L~s~s--~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~l-H~~V~~~Ke 79 (93)
T 3t98_B 14 VQQFEVQLQQYRQQIEELENHLATQA--NNSHITPQDLSMAMQKIYQTFVALAAQLQSI-HENVKVLKE 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHH--HHTTSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 33455666666777777775433221 2256788888887777777777776666554 556665554
No 66
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=20.87 E-value=1.2e+02 Score=18.15 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=21.8
Q ss_pred hhhhhHHHHHHhhhhhHHHHHHHHHHHh
Q 031392 84 EDHSQHAKEETSNMMTKLEFLEVAKRKL 111 (160)
Q Consensus 84 ~~~~e~l~~e~~kl~~~~~~l~~~~r~~ 111 (160)
.+.++.|+.++..|..++..++.++..+
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~L 41 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLL 41 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778899999998888888887543
No 67
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.82 E-value=3.2e+02 Score=21.77 Aligned_cols=47 Identities=13% Similarity=0.163 Sum_probs=24.6
Q ss_pred chhhHHHHhhhcccccccCCcchhhhhhHHHHHHhhhhhHHHHHHHHHHHhhCC
Q 031392 61 SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGD 114 (160)
Q Consensus 61 ~~~~il~RY~~~~~~~~~~~~~~~~~~e~l~~e~~kl~~~~~~l~~~~r~~~g~ 114 (160)
.+...|.+|......+ -..++..-.+++.+......+.......+.+
T Consensus 24 ~i~d~L~k~e~~V~~~-------l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~ 70 (409)
T 1m1j_C 24 GIADFFNKYRLTTDGE-------LLEIEGLLQQATNSTGSIEYLIQHIKTIYPS 70 (409)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred cHHHHHHHHHhcchhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6888999998743221 1223334445555555555544444444443
No 68
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.67 E-value=1.4e+02 Score=18.35 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=12.2
Q ss_pred hhHHHHHHhhhhhHHHHHHHHH
Q 031392 87 SQHAKEETSNMMTKLEFLEVAK 108 (160)
Q Consensus 87 ~e~l~~e~~kl~~~~~~l~~~~ 108 (160)
+..|..+...|+.+++.++.+.
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666665555543
No 69
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.53 E-value=1.8e+02 Score=18.84 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=31.7
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 87 SQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFR 147 (160)
Q Consensus 87 ~e~l~~e~~kl~~~~~~l~~~~r~~~g~~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~ 147 (160)
++.++.++..++.....++..+..... -....+.+++..-..|+..|..+|.--...+.
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~--~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~ 103 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQ--RGELALKDARNKLAELEEALQKAKQDMARLLR 103 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555555555555555544433211 01223456666666777777777776555443
No 70
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=20.46 E-value=23 Score=25.77 Aligned_cols=17 Identities=29% Similarity=0.733 Sum_probs=12.9
Q ss_pred CcceeeeeecCCCCccc
Q 031392 40 DAEVALIIFSPRGKLYE 56 (160)
Q Consensus 40 ~~~v~~iv~s~~gk~~~ 56 (160)
+=|-.+-+|||+|++|.
T Consensus 7 ~yd~~~t~fsp~Grl~Q 23 (241)
T 1iru_E 7 EYDRGVNTFSPEGRLFQ 23 (241)
T ss_dssp -CCCCTTCBCTTSCBHH
T ss_pred CCCCCCceECCCCccHH
Confidence 34667779999999884
No 71
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=20.45 E-value=23 Score=25.79 Aligned_cols=15 Identities=47% Similarity=0.959 Sum_probs=12.2
Q ss_pred ceeeeeecCCCCccc
Q 031392 42 EVALIIFSPRGKLYE 56 (160)
Q Consensus 42 ~v~~iv~s~~gk~~~ 56 (160)
|-.+-+|||.|++|.
T Consensus 6 d~~~t~fsp~Grl~Q 20 (244)
T 1ryp_C 6 DSRTTIFSPEGRLYQ 20 (244)
T ss_dssp CCCTTCBCTTSCBHH
T ss_pred CCCCceECcCCeeHH
Confidence 556778999999885
No 72
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.24 E-value=1.3e+02 Score=16.78 Aligned_cols=41 Identities=17% Similarity=0.372 Sum_probs=23.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031392 115 GLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEK 156 (160)
Q Consensus 115 ~l~~Ls~~eL~~Le~~Le~~l~~Vr~RK~~ll~~~~~~l~~k 156 (160)
.+.|.+.+|...+-..+...+.........| .+++..|+++
T Consensus 16 ~~rGY~~~EVD~FLd~v~~~~~~l~~e~~~L-~~~~~~l~~~ 56 (57)
T 2wuj_A 16 SFRGYDEDEVNEFLAQVRKDYEIVLRKKTEL-EAKVNELDER 56 (57)
T ss_dssp ETTEEEHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHC----
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 3456777777777777777776666555444 5555555543
No 73
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=20.11 E-value=1e+02 Score=15.68 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=10.5
Q ss_pred hhHHHHHHhhhhhHHHHHH
Q 031392 87 SQHAKEETSNMMTKLEFLE 105 (160)
Q Consensus 87 ~e~l~~e~~kl~~~~~~l~ 105 (160)
++.-..+++.|+++++.+.
T Consensus 16 ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 16 IEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 4444556666666665543
No 74
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=20.06 E-value=23 Score=26.22 Aligned_cols=17 Identities=41% Similarity=0.798 Sum_probs=13.3
Q ss_pred CcceeeeeecCCCCccc
Q 031392 40 DAEVALIIFSPRGKLYE 56 (160)
Q Consensus 40 ~~~v~~iv~s~~gk~~~ 56 (160)
+-|-.+-+|||.|++|.
T Consensus 4 ~yd~~~t~fsp~Grl~Q 20 (261)
T 1iru_C 4 RYDSRTTIFSPEGRLYQ 20 (261)
T ss_dssp TTCCCTTCCCTTSCCHH
T ss_pred ccCCCCccCCCCCeehH
Confidence 34667789999999885
Done!