Query 031394
Match_columns 160
No_of_seqs 129 out of 1262
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 21:42:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_W Ribosomal protein L24; 100.0 8.3E-53 2.8E-57 340.1 -4.2 157 2-160 34-190 (191)
2 3v2d_Y 50S ribosomal protein L 100.0 5.6E-42 1.9E-46 256.7 11.7 108 33-140 3-110 (110)
3 3r8s_U 50S ribosomal protein L 100.0 2.6E-39 8.8E-44 239.5 11.0 100 35-136 2-102 (102)
4 2ftc_N Mitochondrial ribosomal 100.0 2.1E-38 7.3E-43 232.3 12.2 96 40-136 1-96 (96)
5 2zjr_R 50S ribosomal protein L 100.0 2.1E-39 7.1E-44 244.4 2.8 102 35-137 14-115 (115)
6 1vq8_T 50S ribosomal protein L 100.0 7.8E-32 2.7E-36 204.4 5.5 95 5-116 17-111 (120)
7 3j21_U 50S ribosomal protein L 100.0 3.4E-31 1.1E-35 201.2 7.8 96 5-117 20-115 (121)
8 3u5e_Y L33, YL33, 60S ribosoma 100.0 9.9E-30 3.4E-34 194.4 6.8 89 6-111 25-113 (127)
9 4a17_S RPL26, 60S ribosomal pr 100.0 1.4E-29 4.9E-34 195.2 6.5 89 6-111 24-112 (135)
10 2zkr_t 60S ribosomal protein L 100.0 2.9E-29 9.9E-34 195.6 6.6 103 6-128 24-127 (145)
11 3iz5_Y 60S ribosomal protein L 100.0 6.7E-29 2.3E-33 194.3 6.8 89 6-111 24-112 (150)
12 1nz9_A Transcription antitermi 98.1 3.3E-06 1.1E-10 55.1 4.7 35 36-70 4-38 (58)
13 3p8b_B Transcription antitermi 97.7 3.9E-05 1.3E-09 58.5 5.6 78 13-108 71-148 (152)
14 2e6z_A Transcription elongatio 97.4 5.6E-05 1.9E-09 49.9 2.1 36 35-70 6-41 (59)
15 2jvv_A Transcription antitermi 97.2 0.00042 1.4E-08 53.9 5.0 37 34-70 125-161 (181)
16 2do3_A Transcription elongatio 96.9 0.00095 3.2E-08 45.8 4.0 38 36-74 17-54 (69)
17 2ckk_A KIN17; beta barrel, rib 96.5 0.003 1E-07 47.5 4.7 33 38-70 72-104 (127)
18 2xhc_A Transcription antitermi 96.2 0.0066 2.2E-07 52.6 5.6 37 34-70 296-332 (352)
19 1m1h_A Transcription antitermi 95.6 0.0022 7.4E-08 53.2 0.0 37 34-70 192-228 (248)
20 2joy_A 50S ribosomal protein L 92.1 0.1 3.5E-06 37.3 3.0 35 37-72 4-38 (96)
21 4a18_N RPL27, ribosomal protei 91.8 0.23 8E-06 38.2 5.0 39 37-75 5-49 (144)
22 3iz5_N 60S ribosomal protein L 90.5 0.22 7.7E-06 37.9 3.7 36 37-73 7-42 (134)
23 3izc_N 60S ribosomal protein R 90.2 0.25 8.4E-06 37.8 3.6 36 36-72 14-49 (138)
24 3j21_5 50S ribosomal protein L 89.3 0.24 8.1E-06 34.6 2.7 35 37-72 4-38 (83)
25 2e70_A Transcription elongatio 89.3 0.42 1.4E-05 32.7 3.9 31 38-70 19-49 (71)
26 4a18_F RPL14; ribosome, eukary 89.1 0.58 2E-05 35.3 4.9 36 37-73 7-42 (126)
27 3iz5_G 60S ribosomal protein L 79.4 1 3.4E-05 36.9 2.5 63 36-104 74-139 (219)
28 1qp2_A Protein (PSAE protein); 76.9 2.4 8.3E-05 28.9 3.5 38 37-74 2-45 (70)
29 3izc_G 60S ribosomal protein R 75.6 1.6 5.5E-05 34.6 2.6 63 36-104 33-98 (176)
30 4a18_E RPL6; ribosome, eukaryo 75.6 2.7 9.2E-05 33.7 4.0 64 36-105 44-110 (191)
31 2oug_A Transcriptional activat 74.4 0.0088 3E-07 45.3 -10.5 30 35-64 108-137 (162)
32 3iz6_D 40S ribosomal protein S 72.2 4.7 0.00016 33.8 4.8 39 33-71 171-212 (265)
33 1vq8_Q 50S ribosomal protein L 62.2 5.8 0.0002 28.4 2.9 52 16-70 15-77 (96)
34 3j20_E 30S ribosomal protein S 62.0 5.3 0.00018 33.0 3.1 41 32-72 174-218 (243)
35 3kbg_A 30S ribosomal protein S 61.2 8.3 0.00028 31.2 4.1 39 32-70 134-176 (213)
36 2xzm_W 40S ribosomal protein S 60.4 14 0.00049 30.7 5.5 40 32-71 172-214 (260)
37 4a17_P RPL21, 60S ribosomal pr 58.5 7.6 0.00026 30.1 3.2 54 29-82 25-99 (157)
38 3j21_R 50S ribosomal protein L 57.5 6.5 0.00022 28.2 2.5 52 16-70 16-78 (97)
39 3iz5_U 60S ribosomal protein L 57.3 3.1 0.00011 32.6 0.8 42 29-70 25-77 (164)
40 3u5c_E RP5, S7, YS6, 40S ribos 57.2 6 0.00021 33.0 2.6 38 33-70 171-211 (261)
41 1at0_A 17-hedgehog; developmen 55.6 19 0.00067 26.4 5.0 27 35-61 90-117 (145)
42 1zuy_A Myosin-5 isoform; SH3 d 55.0 13 0.00045 22.3 3.4 17 33-49 16-32 (58)
43 2jz2_A SSL0352 protein; SH3-li 50.6 19 0.00063 24.2 3.7 40 37-76 2-43 (66)
44 2ew3_A SH3-containing GRB2-lik 50.2 11 0.00038 24.0 2.6 17 33-49 18-34 (68)
45 2g6f_X RHO guanine nucleotide 49.6 12 0.00041 22.7 2.6 17 33-49 19-35 (59)
46 1zuu_A BZZ1 protein; SH3 domai 47.1 19 0.00063 21.6 3.2 17 33-49 16-32 (58)
47 1uti_A GRB2-related adaptor pr 47.1 14 0.00048 22.3 2.6 17 33-49 16-32 (58)
48 3izc_a 60S ribosomal protein R 47.0 1.2 4.2E-05 33.9 -2.9 39 37-75 5-49 (136)
49 1ruw_A Myosin-3 isoform, MYO3; 45.9 21 0.00072 22.3 3.4 17 33-49 18-34 (69)
50 2bzy_A CRK-like protein, CRKL 45.0 15 0.00052 23.0 2.6 16 33-48 18-33 (67)
51 2nwm_A Vinexin; cell adhesion; 44.8 15 0.00053 23.1 2.6 17 33-49 16-32 (65)
52 1jb0_E Photosystem 1 reaction 44.7 30 0.001 23.7 4.1 37 37-73 1-44 (75)
53 2a28_A BZZ1 protein; SH3 domai 44.6 29 0.001 20.5 3.8 17 33-49 15-31 (54)
54 3izc_U 60S ribosomal protein R 44.6 14 0.00049 28.7 2.8 42 29-70 25-77 (160)
55 2vwf_A Growth factor receptor- 44.6 16 0.00055 21.9 2.6 16 33-48 17-32 (58)
56 2ak5_A RHO guanine nucleotide 44.5 16 0.00054 22.5 2.6 17 33-49 21-37 (64)
57 2x3w_D Syndapin I, protein kin 44.0 21 0.00072 21.5 3.1 16 33-48 18-33 (60)
58 2xmf_A Myosin 1E SH3; motor pr 43.5 17 0.00058 22.1 2.6 17 33-49 20-36 (60)
59 2gnc_A SLIT-ROBO RHO GTPase-ac 43.4 17 0.00058 22.1 2.6 16 33-48 21-36 (60)
60 1dj7_B Ferredoxin thioredoxin 42.8 22 0.00076 24.4 3.2 25 38-62 2-40 (75)
61 1sem_A SEM-5; SRC-homology 3 ( 42.8 31 0.001 20.6 3.7 17 33-49 17-33 (58)
62 1w70_A Neutrophil cytosol fact 42.5 18 0.00061 22.0 2.6 17 33-49 19-35 (60)
63 1yfb_A Transition state regula 42.4 24 0.00081 22.6 3.2 24 15-49 25-48 (59)
64 3c0c_A Endophilin-A2; endocyto 42.3 17 0.0006 23.1 2.6 17 33-49 28-44 (73)
65 2yuo_A CIP85, RUN and TBC1 dom 41.8 18 0.00061 23.3 2.6 15 33-47 22-36 (78)
66 2zzd_A Thiocyanate hydrolase s 41.6 23 0.00078 26.5 3.4 28 34-61 34-71 (126)
67 2iim_A Proto-oncogene tyrosine 41.5 22 0.00077 21.7 2.9 16 33-48 21-36 (62)
68 3iz5_a 60S ribosomal protein L 41.3 1.3 4.4E-05 33.8 -3.6 38 37-74 5-48 (136)
69 2ege_A Uncharacterized protein 41.3 18 0.00062 23.2 2.6 15 33-47 29-43 (75)
70 4b6m_A Tubulin-specific chaper 40.8 20 0.0007 24.8 2.9 24 36-62 5-28 (84)
71 1x2k_A OSTF1, osteoclast stimu 40.4 21 0.00073 22.3 2.7 16 33-48 22-37 (68)
72 1gcq_C VAV proto-oncogene; SH3 40.3 34 0.0012 21.3 3.7 15 34-48 26-40 (70)
73 2dl8_A SLIT-ROBO RHO GTPase-ac 40.1 20 0.00068 22.7 2.6 15 33-47 24-38 (72)
74 1k1z_A VAV; SH3, proto-oncogen 40.0 33 0.0011 21.9 3.7 17 33-49 33-49 (78)
75 2eyx_A V-CRK sarcoma virus CT1 39.7 16 0.00055 22.9 2.1 15 34-48 24-38 (67)
76 1j3t_A Intersectin 2; beta bar 39.7 19 0.00064 23.0 2.4 16 33-48 25-40 (74)
77 3eg3_A Proto-oncogene tyrosine 39.4 22 0.00074 21.6 2.6 15 33-47 20-34 (63)
78 2dl3_A Sorbin and SH3 domain-c 39.2 24 0.00084 21.8 2.9 16 33-48 22-37 (68)
79 2k52_A Uncharacterized protein 38.8 44 0.0015 21.7 4.3 25 36-70 45-69 (80)
80 1csk_A C-SRC SH3 domain; phosp 38.6 25 0.00085 22.1 2.9 15 33-47 26-40 (71)
81 3dcl_A TM1086; SAD, structural 38.6 43 0.0015 28.2 4.9 32 39-70 86-117 (284)
82 2l66_A SSO7C4, transcriptional 38.0 35 0.0012 20.9 3.4 25 15-50 15-39 (53)
83 2epd_A RHO GTPase-activating p 37.3 22 0.00075 22.8 2.5 16 33-48 25-40 (76)
84 2d8h_A SH3YL1 protein; SH3 dom 37.0 38 0.0013 21.8 3.6 17 33-49 32-48 (80)
85 2ydl_A SH3 domain-containing k 37.0 24 0.00081 22.5 2.6 16 33-48 17-32 (69)
86 2lcs_A NAP1-binding protein 2; 36.7 28 0.00094 22.4 2.9 16 33-48 20-35 (73)
87 1whl_A Cylindromatosis tumor s 36.6 32 0.0011 24.0 3.4 27 36-62 7-34 (95)
88 1w1f_A Tyrosine-protein kinase 35.8 24 0.00082 21.6 2.4 16 33-48 22-37 (65)
89 2k9g_A SH3 domain-containing k 35.4 26 0.00089 22.1 2.6 16 33-48 24-39 (73)
90 2ysq_A RHO guanine nucleotide 35.4 28 0.00095 22.5 2.8 16 33-48 25-40 (81)
91 1yn8_A NBP2, NAP1-binding prot 34.5 26 0.0009 20.9 2.4 16 33-48 16-31 (59)
92 2ebp_A SAM and SH3 domain-cont 34.4 31 0.0011 22.0 2.9 18 32-49 25-42 (73)
93 1uhf_A Intersectin 2; beta bar 34.2 32 0.0011 21.6 2.8 15 33-47 23-37 (69)
94 2oqk_A Putative translation in 34.1 40 0.0014 24.3 3.7 28 37-64 71-98 (117)
95 2dl7_A KIAA0769 protein; SH3 d 33.2 30 0.001 21.9 2.6 16 33-48 23-38 (73)
96 1nm7_A Peroxisomal membrane pr 33.1 38 0.0013 21.8 3.1 16 34-49 24-39 (69)
97 1vhy_A Hypothetical protein HI 33.0 38 0.0013 27.3 3.8 35 36-70 35-69 (257)
98 1ugp_B NitrIle hydratase beta 32.8 41 0.0014 27.2 3.9 29 33-61 135-173 (226)
99 4e8b_A Ribosomal RNA small sub 32.7 39 0.0013 27.1 3.8 47 16-69 20-66 (251)
100 3jyw_Q 60S ribosomal protein L 32.7 6.9 0.00024 29.0 -0.7 54 29-82 24-98 (116)
101 3qyh_B CO-type nitrIle hydrata 32.7 35 0.0012 27.5 3.5 29 33-61 127-165 (219)
102 2dmo_A Neutrophil cytosol fact 32.2 27 0.00091 21.8 2.2 16 33-48 22-37 (68)
103 1oot_A Hypothetical 40.4 kDa p 32.2 58 0.002 19.5 3.7 17 33-49 18-34 (60)
104 2fei_A CD2-associated protein; 32.1 22 0.00074 22.4 1.7 16 33-48 16-31 (65)
105 2dlp_A KIAA1783 protein; SH3 d 31.9 28 0.00097 22.8 2.4 15 33-47 23-37 (85)
106 2dil_A Proline-serine-threonin 31.7 32 0.0011 21.4 2.5 16 33-48 23-38 (69)
107 3hht_B NitrIle hydratase beta 31.3 38 0.0013 27.5 3.5 28 34-61 139-176 (229)
108 2enm_A Sorting nexin-9; SH3-li 31.1 53 0.0018 20.8 3.6 17 32-48 24-40 (77)
109 1uhc_A KIAA1010 protein; beta 31.0 53 0.0018 21.0 3.6 17 33-49 28-44 (79)
110 3tee_A Flagella basal BODY P-r 30.9 35 0.0012 27.1 3.1 39 33-72 137-187 (219)
111 2vkn_A Protein SSU81; membrane 30.4 48 0.0016 20.7 3.2 14 34-47 23-36 (70)
112 2l0a_A STAM-1, signal transduc 30.3 31 0.0011 22.3 2.3 15 33-47 32-46 (72)
113 2oi3_A Tyrosine-protein kinase 30.2 31 0.0011 22.4 2.3 16 33-48 40-55 (86)
114 2dbm_A SH3-containing GRB2-lik 30.0 22 0.00077 22.5 1.5 17 33-49 22-38 (73)
115 2jte_A CD2-associated protein; 29.9 65 0.0022 19.5 3.7 16 33-48 21-36 (64)
116 1x69_A Cortactin isoform A; SH 29.9 35 0.0012 21.9 2.5 16 33-48 32-47 (79)
117 1i07_A Epidermal growth factor 29.8 34 0.0011 20.7 2.3 16 33-48 16-31 (60)
118 2jt4_A Cytoskeleton assembly c 29.7 59 0.002 20.1 3.6 16 33-48 21-36 (71)
119 1vhk_A Hypothetical protein YQ 29.6 49 0.0017 26.8 3.9 35 35-69 35-69 (268)
120 4a4f_A SurviVal of motor neuro 29.6 1.1E+02 0.0037 19.3 5.1 36 35-70 7-43 (64)
121 3kw2_A Probable R-RNA methyltr 29.4 46 0.0016 26.9 3.7 35 36-70 32-66 (257)
122 2v1r_A Peroxisomal membrane pr 29.3 42 0.0014 21.4 2.9 16 34-49 31-46 (80)
123 2ega_A SH3 and PX domain-conta 29.1 26 0.00087 21.9 1.7 16 33-48 23-38 (70)
124 2csi_A RIM-BP2, RIM binding pr 29.0 56 0.0019 20.8 3.4 17 33-49 29-45 (76)
125 2da9_A SH3-domain kinase bindi 28.8 35 0.0012 21.3 2.3 16 33-48 22-37 (70)
126 1z85_A Hypothetical protein TM 28.5 49 0.0017 26.4 3.6 35 36-70 40-74 (234)
127 2eqm_A PHD finger protein 20-l 28.2 1.4E+02 0.0049 20.3 6.0 36 34-69 17-52 (88)
128 1wxt_A Hypothetical protein FL 28.1 48 0.0016 20.6 2.9 15 33-47 22-36 (68)
129 2dl5_A KIAA0769 protein; SH3 d 28.0 50 0.0017 21.1 3.1 17 33-49 28-44 (78)
130 2zkr_q 60S ribosomal protein L 28.0 24 0.00083 27.4 1.6 43 28-70 24-77 (160)
131 1jqq_A PEX13P, peroxisomal mem 27.9 45 0.0015 22.0 2.9 16 34-49 31-46 (92)
132 1x6g_A Megakaryocyte-associate 27.8 63 0.0022 20.9 3.6 16 33-48 32-47 (81)
133 2glw_A PHS018, 92AA long hypot 27.7 42 0.0014 23.2 2.8 22 15-47 63-84 (92)
134 1u5s_A Cytoplasmic protein NCK 27.7 43 0.0015 20.8 2.6 16 33-48 21-36 (71)
135 2bz8_A SH3-domain kinase bindi 27.4 49 0.0017 19.7 2.8 17 33-49 16-32 (58)
136 2csq_A RIM-BP2, RIM binding pr 27.4 67 0.0023 21.5 3.7 15 33-47 40-54 (97)
137 1gbq_A GRB2; complex (signal t 27.3 47 0.0016 21.1 2.8 17 33-49 24-40 (74)
138 1ujy_A RHO guanine nucleotide 27.1 24 0.0008 22.6 1.2 16 33-48 25-40 (76)
139 1lpl_A Hypothetical 25.4 kDa p 26.9 66 0.0023 22.4 3.7 26 36-62 11-37 (95)
140 2b86_A Cytoplasmic protein NCK 26.6 39 0.0013 21.5 2.2 15 33-47 19-33 (67)
141 1tg0_A BBC1 protein, myosin ta 26.2 38 0.0013 21.0 2.1 16 33-48 22-37 (68)
142 2rf0_A Mitogen-activated prote 26.2 51 0.0017 22.1 2.9 16 33-48 44-59 (89)
143 2k2m_A EPS8-like protein 1; al 25.9 67 0.0023 19.9 3.3 15 33-47 23-37 (68)
144 1ugv_A KIAA0621, olygophrenin- 25.9 23 0.0008 22.4 1.1 15 33-47 25-39 (72)
145 1jt8_A EIF-1A, probable transl 25.8 48 0.0016 23.6 2.8 28 36-63 58-86 (102)
146 2vc8_A Enhancer of mRNA-decapp 25.7 1.7E+02 0.0058 20.3 5.6 34 39-72 8-42 (84)
147 4fm4_B NitrIle hydratase beta 25.7 51 0.0018 26.2 3.2 27 35-61 117-153 (206)
148 1mhn_A SurviVal motor neuron p 25.6 1.2E+02 0.0042 18.6 4.8 34 37-70 4-38 (59)
149 1d7q_A Translation initiation 25.3 76 0.0026 24.0 4.0 31 35-65 68-98 (143)
150 2lx9_A Ferrous iron transport 25.3 97 0.0033 20.5 4.2 40 1-48 1-42 (83)
151 2khj_A 30S ribosomal protein S 25.1 90 0.0031 21.4 4.1 25 36-70 75-99 (109)
152 2khi_A 30S ribosomal protein S 24.9 89 0.0031 21.7 4.1 25 36-70 75-99 (115)
153 2yuq_A Tyrosine-protein kinase 24.9 59 0.002 21.1 3.0 17 33-49 34-50 (85)
154 1jo8_A ABP1P, actin binding pr 24.6 57 0.0019 19.4 2.7 16 33-48 15-30 (58)
155 2i0n_A Class VII unconventiona 24.5 58 0.002 21.0 2.9 19 33-51 25-43 (80)
156 2ct4_A CDC42-interacting prote 24.4 80 0.0027 19.5 3.5 16 33-48 22-37 (70)
157 2yup_A Vinexin; sorbin and SH3 24.3 43 0.0015 22.1 2.2 16 33-48 32-47 (90)
158 3rnj_A Brain-specific angiogen 24.3 62 0.0021 19.9 2.9 14 35-48 25-38 (67)
159 1wx6_A Cytoplasmic protein NCK 24.0 81 0.0028 20.6 3.6 16 33-48 32-47 (91)
160 1k4u_S Phagocyte NADPH oxidase 23.8 53 0.0018 19.9 2.4 16 33-48 20-35 (62)
161 2kxc_A Brain-specific angiogen 23.7 38 0.0013 20.9 1.7 16 33-48 22-37 (67)
162 3i5r_A Phosphatidylinositol 3- 23.7 84 0.0029 20.2 3.6 16 32-47 19-34 (83)
163 3k1f_M Transcription initiatio 23.6 63 0.0022 25.8 3.3 53 101-156 19-79 (197)
164 2lj0_A Sorbin and SH3 domain-c 23.6 55 0.0019 20.8 2.5 19 32-50 20-38 (65)
165 2cuc_A SH3 domain containing r 23.5 67 0.0023 19.8 2.9 16 33-48 22-37 (70)
166 1ixd_A Cylindromatosis tumour- 23.5 86 0.0029 22.3 3.8 31 30-62 11-41 (104)
167 1wxb_A Epidermal growth factor 23.5 65 0.0022 19.9 2.9 15 33-47 22-36 (68)
168 1v6z_A Hypothetical protein TT 23.4 83 0.0028 24.8 4.1 33 36-70 28-60 (228)
169 2m0y_A Dedicator of cytokinesi 23.3 64 0.0022 20.1 2.8 16 33-48 26-41 (74)
170 1t9h_A YLOQ, probable GTPase E 22.8 67 0.0023 26.5 3.5 28 38-67 52-79 (307)
171 1wi7_A SH3-domain kinase bindi 22.8 39 0.0013 20.9 1.7 15 33-47 22-36 (68)
172 2fpe_A C-JUN-amino-terminal ki 22.7 60 0.0021 19.6 2.5 16 33-48 18-33 (62)
173 2heq_A YORP protein; SH3-like, 22.6 87 0.003 21.4 3.4 32 30-61 5-42 (84)
174 1cka_A C-CRK N-terminal SH3 do 22.5 64 0.0022 19.0 2.6 16 33-48 16-31 (57)
175 2dgy_A MGC11102 protein; EIF-1 22.3 79 0.0027 22.7 3.4 30 35-64 52-82 (111)
176 1x6b_A RHO guanine exchange fa 22.3 44 0.0015 21.5 1.9 15 33-47 32-46 (79)
177 2k4k_A GSP13, general stress p 22.2 1.1E+02 0.0037 21.9 4.2 25 36-70 51-75 (130)
178 2jw4_A Cytoplasmic protein NCK 21.8 91 0.0031 19.5 3.4 15 33-47 22-36 (72)
179 2drm_A Acanthamoeba myosin IB; 21.6 73 0.0025 18.8 2.7 17 33-49 18-34 (58)
180 1uj0_A Signal transducing adap 21.5 70 0.0024 19.3 2.7 16 33-48 20-35 (62)
181 2fpf_A C-JUN-amino-terminal ki 21.4 65 0.0022 20.1 2.5 16 33-48 21-36 (71)
182 4glm_A Dynamin-binding protein 21.4 65 0.0022 19.8 2.5 18 33-50 28-45 (72)
183 2rqr_A CED-12 homolog, engulfm 21.3 55 0.0019 23.1 2.4 15 33-47 74-88 (119)
184 2e3i_A Restin; CAP-Gly, cytopl 21.1 82 0.0028 21.6 3.2 22 37-62 3-24 (86)
185 2j05_A RAS GTPase-activating p 21.0 68 0.0023 19.6 2.5 17 32-48 20-36 (65)
186 2e3h_A Restin; CAP-Gly, cytopl 20.9 80 0.0027 21.9 3.1 22 37-62 2-23 (90)
187 1y0m_A 1-phosphatidylinositol- 20.8 74 0.0025 19.1 2.7 16 33-48 18-33 (61)
188 2oaw_A Spectrin alpha chain, b 20.7 74 0.0025 19.1 2.7 16 33-48 16-31 (65)
189 1txq_A Dynactin 1; protein com 20.7 68 0.0023 22.3 2.7 24 36-62 12-35 (93)
190 1gl5_A Tyrosine-protein kinase 20.6 72 0.0025 19.6 2.6 17 33-49 17-33 (67)
191 1zx6_A YPR154WP; SH3 domain, p 20.5 70 0.0024 19.0 2.5 16 33-48 17-32 (58)
192 1whg_A Tubulin specific chaper 20.5 96 0.0033 22.4 3.6 26 36-62 32-58 (113)
193 3gqh_A Preneck appendage prote 20.3 29 0.00099 27.0 0.7 33 105-137 6-38 (163)
No 1
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=8.3e-53 Score=340.15 Aligned_cols=157 Identities=64% Similarity=1.027 Sum_probs=108.0
Q ss_pred CCCCCCcceeeeccCCHHHHHhcCCCCCccccccceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEeceeeeeEEecC
Q 031394 2 QVKPTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKK 81 (160)
Q Consensus 2 ~~~~~~~~~~~s~~l~~~lR~k~~~~~~~~~~k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~ 81 (160)
++++.+++|++.++|++|||++|+++++|+..+|+|++||+|+||+|+|||++|+|++|++++++|+|||+|++++|++|
T Consensus 34 ~~~~~~~~~~~~~~l~~~lr~k~~~rslP~~~kmkIkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVEGVN~vkKH~Kp 113 (191)
T 3bbo_W 34 VKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKS 113 (191)
T ss_dssp -----------------------------CTTSCCSCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCSSCCCCCCBCCS
T ss_pred cccccCCceeeEecccHHHHHHhCCCCCCccccCeeecCCEEEEeecCCCCceEEEEEEECCCCEEEEeCCEEEEEecCC
Confidence 56788999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred CccccCceeEEEeecCcCCCeeeeecCCCCeeeEEEEEccCCcEEEEEeccCCcccchhhhhHhhhccccceeeecccC
Q 031394 82 REEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKEANRQEKTEVATAA 160 (160)
Q Consensus 82 ~~~~~~ggiv~~e~PI~iSnV~Lv~p~~~~ptRv~~~~~edG~kvRv~kksg~~i~~p~~~~~~~~~~~~~~~~~~~~~ 160 (160)
++.+++|||+++|+|||+|||+|+||.+++||||+|++++||+++|||++||++|+.|+.|+++.+++. +||++.||
T Consensus 114 ~~~~~~GgIv~kEaPIhiSNV~Lvdp~~gkptRVg~k~~edGkKVRv~KksGe~I~~p~~~~~~~~~~~--~~~~~~~~ 190 (191)
T 3bbo_W 114 KEEGEQGQIIKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRKVRYLIKTGEIVDTPDRWKEIQNKKE--SETAVAVA 190 (191)
T ss_dssp CCSSSCCBSSCCCCCCCGGGEEECSSSSCCCCCCCCCSSSCCCCCSSSCCSSSCCCCCC--------------------
T ss_pred cccCCCCCEEEEecCcCHHHeEEEeccCCCceEEEEEEccCCcEEEEEecCCCCcCChhHHHHHHhccc--chhhhhhc
Confidence 988889999999999999999999999999999999998899999999999999999999999999964 46655543
No 2
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=100.00 E-value=5.6e-42 Score=256.72 Aligned_cols=108 Identities=36% Similarity=0.563 Sum_probs=102.5
Q ss_pred cccceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEeceeeeeEEecCCccccCceeEEEeecCcCCCeeeeecCCCCe
Q 031394 33 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVA 112 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~~~~ggiv~~e~PI~iSnV~Lv~p~~~~p 112 (160)
.+|+|++||+|+||+|+|||++|+|++|++++++|+|||+|+.++|++|++.+.+|||+++|+|||+|||+|+||++++|
T Consensus 3 ~k~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEGvN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~ 82 (110)
T 3v2d_Y 3 VKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKP 82 (110)
T ss_dssp CCCSCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETTSSEEEEECCSSSSSTTCCEEEEECCEEGGGEEEBCTTTCSB
T ss_pred cccccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeCEEEEEEEeCCCccCCCCCEEEEECCcCHHHeEEEcCcCCCc
Confidence 47899999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred eeEEEEEccCCcEEEEEeccCCcccchh
Q 031394 113 SRVGHKVLDDGTRVRYLIKTGEIIDSAE 140 (160)
Q Consensus 113 tRv~~~~~edG~kvRv~kksg~~i~~p~ 140 (160)
|||+|++++||+++|||++||++|+.|+
T Consensus 83 tRvg~~~~edG~kvRv~kk~g~~i~~~~ 110 (110)
T 3v2d_Y 83 TRVRKKFLENGKKIRVCAKCGGALDTEE 110 (110)
T ss_dssp CCEEEEECSSCCEEEEESSSCCBCC---
T ss_pred cEEEEEECCCCcEEEEEecCCCccCCCC
Confidence 9999999999999999999999998774
No 3
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=100.00 E-value=2.6e-39 Score=239.48 Aligned_cols=100 Identities=36% Similarity=0.606 Sum_probs=96.3
Q ss_pred cceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEeceeeeeEEecCCcc-ccCceeEEEeecCcCCCeeeeecCCCCee
Q 031394 35 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREE-EEQGQIIKIEAPIHSSNVMLYSKEMEVAS 113 (160)
Q Consensus 35 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~-~~~ggiv~~e~PI~iSnV~Lv~p~~~~pt 113 (160)
++|++||+|+||+|+|||++|+|++|+++ ++|+|||+|+.++|++|++. +++|||+++|+|||+|||+|+||++++||
T Consensus 2 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViVeGvN~~kkh~kp~~~~~~~Ggi~~~E~PIh~SNV~lv~p~~~k~t 80 (102)
T 3r8s_U 2 AKIRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKAD 80 (102)
T ss_dssp CSSCSSCEEEECSSSSTTCEEEEEEEETT-TEEEETTCSEEEEEECCCSSSSCSCEEEEEECCEEGGGEEEEETTTTEEE
T ss_pred CCccCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEEeCeEEEEeccccCcccCCCCCEEEEECCcCHHHEEEEcCcCCCce
Confidence 47899999999999999999999999999 99999999999999999876 88999999999999999999999999999
Q ss_pred eEEEEEccCCcEEEEEeccCCcc
Q 031394 114 RVGHKVLDDGTRVRYLIKTGEII 136 (160)
Q Consensus 114 Rv~~~~~edG~kvRv~kksg~~i 136 (160)
||+|+ ++||+++|||++||++|
T Consensus 81 rvg~~-~edG~kvRv~k~~g~~i 102 (102)
T 3r8s_U 81 RVGFR-FEDGKKVRFFKSNSETI 102 (102)
T ss_dssp CEEEE-EETTEEEEEETTTTEEC
T ss_pred EEEEE-eCCCeEEEEEeecCcCC
Confidence 99999 79999999999999875
No 4
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=100.00 E-value=2.1e-38 Score=232.31 Aligned_cols=96 Identities=30% Similarity=0.499 Sum_probs=93.6
Q ss_pred CCEEEEeecCCCCeeeEEEEEEccCCeEEEeceeeeeEEecCCccccCceeEEEeecCcCCCeeeeecCCCCeeeEEEEE
Q 031394 40 GDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGHKV 119 (160)
Q Consensus 40 GD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~~~~ggiv~~e~PI~iSnV~Lv~p~~~~ptRv~~~~ 119 (160)
||+|+||+|+|||++|+|++|++++++|+|||+|+.++|++|++ +++|+++++|+|||+|||||+||.+++|||++|++
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeGvN~~kkh~kp~~-~~~Ggiv~~e~pIh~SNV~lv~p~~~k~tRvg~~~ 79 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTM-DYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRF 79 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCCEEEEEEcCCCC-CCCCCEEEEecCcCHHHEEEEeCcCCCceEEEEEE
Confidence 89999999999999999999999999999999999999999997 78899999999999999999999999999999999
Q ss_pred ccCCcEEEEEeccCCcc
Q 031394 120 LDDGTRVRYLIKTGEII 136 (160)
Q Consensus 120 ~edG~kvRv~kksg~~i 136 (160)
++||+++|||++||+.|
T Consensus 80 ~~dg~kvR~~kk~g~~i 96 (96)
T 2ftc_N 80 TEAGERVRVSTRSGRII 96 (96)
T ss_pred ccCCcEEEEEeccCCCC
Confidence 99999999999999876
No 5
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=100.00 E-value=2.1e-39 Score=244.38 Aligned_cols=102 Identities=35% Similarity=0.543 Sum_probs=97.0
Q ss_pred cceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEeceeeeeEEecCCccccCceeEEEeecCcCCCeeeeecCCCCeee
Q 031394 35 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLYSKEMEVASR 114 (160)
Q Consensus 35 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~~~~ggiv~~e~PI~iSnV~Lv~p~~~~ptR 114 (160)
|+|++||+|+||+|+|||++|+|++|++++++|+|||+|+.++|++|++.+++|||+++|+|||+|||+|+||++++|||
T Consensus 14 m~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEGvN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~lv~p~~~k~tR 93 (115)
T 2zjr_R 14 LHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATR 93 (115)
T ss_dssp CSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECBSSSSBCCCC
T ss_pred CcccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCcEeEEEecCCCcCCCCCCEEEEEcccCHHHEEEEeccCCCceE
Confidence 45699999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred EEEEEccCCcEEEEEeccCCccc
Q 031394 115 VGHKVLDDGTRVRYLIKTGEIID 137 (160)
Q Consensus 115 v~~~~~edG~kvRv~kksg~~i~ 137 (160)
|+|++ +||+++|||++||+.|+
T Consensus 94 vg~~~-~dG~kvR~~kk~g~~i~ 115 (115)
T 2zjr_R 94 VRKQI-VDGKKVRVAVASGKTID 115 (115)
T ss_dssp CCCCC-SCTTSCCCCSSSCCC--
T ss_pred EEEEE-cCCCEEEEEeecCCCcC
Confidence 99998 89999999999999883
No 6
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=99.97 E-value=7.8e-32 Score=204.43 Aligned_cols=95 Identities=27% Similarity=0.396 Sum_probs=88.2
Q ss_pred CCCcceeeeccCCHHHHHhcCCCCCccccccceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEeceeeeeEEecCCcc
Q 031394 5 PTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREE 84 (160)
Q Consensus 5 ~~~~~~~~s~~l~~~lR~k~~~~~~~~~~k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~ 84 (160)
...|+++||++||+|||++|+.+++++ ++||+|+||+|+|||++|+|++|++++++|+|||+|+ ++ +
T Consensus 17 ~h~rrk~msa~LskeLr~ky~vr~~~I------kkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEgvn~-kK---~--- 83 (120)
T 1vq8_T 17 LHERHKQVRATLSADLREEYGQRNVRV------NAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTL-EK---T--- 83 (120)
T ss_dssp GGGSGGGGEEEECHHHHHHHTCSEEEC------CTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCEE-EC---S---
T ss_pred cchhhheeeCcCCHHHHHhhccccccc------cCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeCeEe-Ec---C---
Confidence 457899999999999999999888776 9999999999999999999999999999999999999 53 2
Q ss_pred ccCceeEEEeecCcCCCeeeeecCCCCeeeEE
Q 031394 85 EEQGQIIKIEAPIHSSNVMLYSKEMEVASRVG 116 (160)
Q Consensus 85 ~~~ggiv~~e~PI~iSnV~Lv~p~~~~ptRv~ 116 (160)
+|| ++|+|||+|||+|+||.+++++|++
T Consensus 84 --~Gg--~~e~pIh~SNV~i~~~~~~k~~Rv~ 111 (120)
T 1vq8_T 84 --DGE--EVPRPLDTSNVRVTDLDLEDEKREA 111 (120)
T ss_dssp --SSC--EEECCBCGGGEEEEECCCCCHHHHH
T ss_pred --CCC--EEEeeechHHEEEEeccCCCchhhe
Confidence 466 9999999999999999999999987
No 7
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.97 E-value=3.4e-31 Score=201.18 Aligned_cols=96 Identities=29% Similarity=0.424 Sum_probs=88.8
Q ss_pred CCCcceeeeccCCHHHHHhcCCCCCccccccceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEeceeeeeEEecCCcc
Q 031394 5 PTDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREE 84 (160)
Q Consensus 5 ~~~~~~~~s~~l~~~lR~k~~~~~~~~~~k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~ 84 (160)
...|+++||++||+|||++|+.+++++ ++||+|+||+|+|||++|+|++|++++++|+|||+|+.++
T Consensus 20 ~h~r~k~msa~LSkeLR~ky~~r~~~I------kkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEgvn~~k~------- 86 (121)
T 3j21_U 20 LHVRQKLMSAPLSRELREKYKVRNLPV------RVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEGATLRKT------- 86 (121)
T ss_dssp TTGGGGGSEEEBCHHHHHHTCCSEEEC------CSSSEEEECSSSCSSEEEEEEEEETTTTEEEETTCEEECS-------
T ss_pred cchhhhhhcCcCCHHHHHHhCCccccc------ccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeCeEEEec-------
Confidence 467899999999999999999999888 9999999999999999999999999999999999999873
Q ss_pred ccCceeEEEeecCcCCCeeeeecCCCCeeeEEE
Q 031394 85 EEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGH 117 (160)
Q Consensus 85 ~~~ggiv~~e~PI~iSnV~Lv~p~~~~ptRv~~ 117 (160)
.|. +.|+|||+|||+|+||.+++++|+++
T Consensus 87 --~G~--~~e~pIh~SNV~l~~~~~~d~~R~~~ 115 (121)
T 3j21_U 87 --NGT--EVFYPIHPSNVMIIELNLEDEKRKKI 115 (121)
T ss_dssp --SSC--EEECCBCGGGEEEEECCCCCHHHHHH
T ss_pred --CCc--EEEcccCHHHeEEEcCccCCcHHHHH
Confidence 132 89999999999999999999998764
No 8
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=99.96 E-value=9.9e-30 Score=194.43 Aligned_cols=89 Identities=22% Similarity=0.432 Sum_probs=82.2
Q ss_pred CCcceeeeccCCHHHHHhcCCCCCccccccceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEeceeeeeEEecCCccc
Q 031394 6 TDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEE 85 (160)
Q Consensus 6 ~~~~~~~s~~l~~~lR~k~~~~~~~~~~k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~~ 85 (160)
..|+++|||+||+|||++|+.+++++ ++||+|+||+|+|||++|+|++|+++.++|+|||+|+.+ +
T Consensus 25 h~r~k~msa~LSkeLr~ky~vrs~~I------kkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~K----~---- 90 (127)
T 3u5e_Y 25 SQRRVLLSAPLSKELRAQYGIKALPI------RRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEK----V---- 90 (127)
T ss_dssp HHHHHHTEEEBCHHHHHHHTCCEEEC------CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEETCEEEC----S----
T ss_pred chhhhheeCcCCHHHHHHhCcCcccc------cCCCEEEEeecCCCCccceEEEEECCCCEEEEeCeEEEC----C----
Confidence 35789999999999999999999998 999999999999999999999999999999999999986 2
Q ss_pred cCceeEEEeecCcCCCeeeeecCCCC
Q 031394 86 EQGQIIKIEAPIHSSNVMLYSKEMEV 111 (160)
Q Consensus 86 ~~ggiv~~e~PI~iSnV~Lv~p~~~~ 111 (160)
.|+ ++|+|||+|||+|+||.+++
T Consensus 91 -~G~--~~e~pIh~SNV~i~~~~~dk 113 (127)
T 3u5e_Y 91 -NGA--SVPINLHPSKLVITKLHLDK 113 (127)
T ss_dssp -SSC--EEECCBCGGGEEEEECCCCH
T ss_pred -CCc--EEEcccchHHEEEEccccCc
Confidence 243 88999999999999998863
No 9
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=99.96 E-value=1.4e-29 Score=195.18 Aligned_cols=89 Identities=24% Similarity=0.413 Sum_probs=82.5
Q ss_pred CCcceeeeccCCHHHHHhcCCCCCccccccceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEeceeeeeEEecCCccc
Q 031394 6 TDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEE 85 (160)
Q Consensus 6 ~~~~~~~s~~l~~~lR~k~~~~~~~~~~k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~~ 85 (160)
..|+++|||+||+|||++|+.+++++ ++||+|+||+|+|||++|+|++|+++.++|+|||+|+.+ +
T Consensus 24 h~rrk~msa~LSkeLr~ky~vRs~~I------kkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~K----~---- 89 (135)
T 4a17_S 24 HLRQTLMSAHLSKDLRSKYNVRSMPV------RKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEKISKNK----L---- 89 (135)
T ss_dssp HHHHHHSEEEECHHHHHHHTCSEEEC------CTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCCEEE----T----
T ss_pred chhhheeeCcCCHHHHHHhCCCcccc------cCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeCeEEEc----C----
Confidence 35789999999999999999999998 999999999999999999999999999999999999986 2
Q ss_pred cCceeEEEeecCcCCCeeeeecCCCC
Q 031394 86 EQGQIIKIEAPIHSSNVMLYSKEMEV 111 (160)
Q Consensus 86 ~~ggiv~~e~PI~iSnV~Lv~p~~~~ 111 (160)
.|+ ++|+|||+|||+|+||.+++
T Consensus 90 -~G~--~~e~pIh~SNV~i~~~k~dk 112 (135)
T 4a17_S 90 -NGA--PYQIPLSASQLVLTKLKLDK 112 (135)
T ss_dssp -TTE--EECCCBCGGGEEEEECCCCH
T ss_pred -CCC--EEEcccchHHEEEEcccCCc
Confidence 243 88999999999999998864
No 10
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.95 E-value=2.9e-29 Score=195.62 Aligned_cols=103 Identities=21% Similarity=0.440 Sum_probs=83.4
Q ss_pred CCcceeeeccCCHHHHHhcCCCCCccccccceecCCEEEEeecCCCCee-eEEEEEEccCCeEEEeceeeeeEEecCCcc
Q 031394 6 TDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKI-GEITKVFRHNSTVMVKDINLKTKHVKKREE 84 (160)
Q Consensus 6 ~~~~~~~s~~l~~~lR~k~~~~~~~~~~k~~I~kGD~V~Vi~GkdKGK~-G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~ 84 (160)
..|+++||++||+|||++|+.+++++ ++||+|+||+|+|||++ |+|++|++++++|+|||+|+. +|+
T Consensus 24 h~Rrk~msa~LSkelr~ky~vr~~~I------kkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEgvn~~----Kp~-- 91 (145)
T 2zkr_t 24 HIRRKIMSSPLSKELRQKYNVRSMPI------RKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQRE----KAN-- 91 (145)
T ss_dssp HHHGGGGBC-CCHHHHHC-CC-CCBC------CTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETTCEEE----CSS--
T ss_pred HHHHHHHhcccChhHHhhcCcccccc------CCCCEEEEeecCCCCcceeEEEEEECCCCEEEEeeeEeE----cCC--
Confidence 46899999999999999999988776 99999999999999999 999999999999999999993 453
Q ss_pred ccCceeEEEeecCcCCCeeeeecCCCCeeeEEEEEccCCcEEEE
Q 031394 85 EEQGQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRY 128 (160)
Q Consensus 85 ~~~ggiv~~e~PI~iSnV~Lv~p~~~~ptRv~~~~~edG~kvRv 128 (160)
| +++|+|||+|||+|+||.++++++ ..++...+.|.
T Consensus 92 ---G--~~~e~PIh~SNV~lv~~~~~k~~k---~~le~k~~~r~ 127 (145)
T 2zkr_t 92 ---G--TTVHVGIHPSKVVITRLKLDKDRK---KILERKAKSRQ 127 (145)
T ss_dssp ---C--CEEECCBCGGGEEECC-CCCHHHH---HHHHC------
T ss_pred ---C--ceEEeccCHHHEEEEcCcCCchHH---HHhhcccccch
Confidence 3 699999999999999999999986 23455444444
No 11
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=99.95 E-value=6.7e-29 Score=194.29 Aligned_cols=89 Identities=24% Similarity=0.440 Sum_probs=82.3
Q ss_pred CCcceeeeccCCHHHHHhcCCCCCccccccceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEeceeeeeEEecCCccc
Q 031394 6 TDKPCLIVVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEE 85 (160)
Q Consensus 6 ~~~~~~~s~~l~~~lR~k~~~~~~~~~~k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~~ 85 (160)
..|+++||++||+|||++|+.+++++ ++||+|+||+|+|||++|+|++|+++.++|+|||||+.+.
T Consensus 24 h~Rrk~msa~LSkELR~ky~vRs~~I------kKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VEGVN~~K~-------- 89 (150)
T 3iz5_Y 24 SVRRVLMSAALSTELRHKYNVRSIPI------RKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVERITREKV-------- 89 (150)
T ss_dssp HHHHHTTEEEECHHHHTTTTCSEEEC------CSSSEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEECT--------
T ss_pred chhhhheeCcCCHHHHHHhCCccccc------CCCCEEEEeecCCCCccceEEEEEcCCCEEEEeCcEEEeC--------
Confidence 35889999999999999999999998 9999999999999999999999999999999999999872
Q ss_pred cCceeEEEeecCcCCCeeeeecCCCC
Q 031394 86 EQGQIIKIEAPIHSSNVMLYSKEMEV 111 (160)
Q Consensus 86 ~~ggiv~~e~PI~iSnV~Lv~p~~~~ 111 (160)
.|. +.|+|||+|||+|+||.+++
T Consensus 90 -~G~--~~eapIh~SNV~i~~~k~dk 112 (150)
T 3iz5_Y 90 -NGS--TVNVGIHPSKVVVTKLKLDK 112 (150)
T ss_dssp -TSC--EEECCBCGGGEEEEECCCCS
T ss_pred -CCC--EEecccchHHEEEEcccCCh
Confidence 133 78999999999999998864
No 12
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=98.11 E-value=3.3e-06 Score=55.12 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=32.7
Q ss_pred ceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEe
Q 031394 36 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 36 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 70 (160)
.+.+||+|.|++|+++|..|.|.+++++++++.|.
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~ 38 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVM 38 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEE
Confidence 45899999999999999999999999999998887
No 13
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=97.75 E-value=3.9e-05 Score=58.47 Aligned_cols=78 Identities=26% Similarity=0.208 Sum_probs=56.6
Q ss_pred eccCCHHHHHhcCCCCCccccccceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEeceeeeeEEecCCccccCceeEE
Q 031394 13 VVRLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQGQIIK 92 (160)
Q Consensus 13 s~~l~~~lR~k~~~~~~~~~~k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~~kkh~k~~~~~~~ggiv~ 92 (160)
..+|+.++-..+.... .....+.+||.|.|+.|+++|..|.|.+|+.+++++.|.-.- .+. +
T Consensus 71 g~~v~~~Ei~~il~~~---~~~~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~----------~gr-----~ 132 (152)
T 3p8b_B 71 PGEVPFKEIEHFLEEK---PAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFID----------AIV-----P 132 (152)
T ss_dssp SSCBCGGGTGGGCCCS---CTTTTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESS----------CSS-----C
T ss_pred CCCCCHHHHHHHhCcC---CccccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEe----------cce-----e
Confidence 3366666655554322 123457999999999999999999999999999999887321 111 3
Q ss_pred EeecCcCCCeeeeecC
Q 031394 93 IEAPIHSSNVMLYSKE 108 (160)
Q Consensus 93 ~e~PI~iSnV~Lv~p~ 108 (160)
.+..|++|+|..++.+
T Consensus 133 tpvel~~~~v~~i~~~ 148 (152)
T 3p8b_B 133 IPVTIKGDYVRLISKL 148 (152)
T ss_dssp CEEEEEGGGEEEEECC
T ss_pred EEEEECHHHEEEeccc
Confidence 4677888999988753
No 14
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.42 E-value=5.6e-05 Score=49.89 Aligned_cols=36 Identities=31% Similarity=0.295 Sum_probs=29.1
Q ss_pred cceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEe
Q 031394 35 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 35 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 70 (160)
..+.+||.|.|+.|+++|-.|+|.+|+.++-+|.|.
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~evd~e~v~V~v~ 41 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPK 41 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCCBTTEEEEEEC
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEEeCCEEEEEEE
Confidence 345899999999999999999999999863333443
No 15
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=97.19 E-value=0.00042 Score=53.92 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=32.9
Q ss_pred ccceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEe
Q 031394 34 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 34 k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 70 (160)
...+.+||+|.|+.|+++|-.|.|.+|+.+++++.|.
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~ 161 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS 161 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEE
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEE
Confidence 3456899999999999999999999999988888765
No 16
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=96.88 E-value=0.00095 Score=45.84 Aligned_cols=38 Identities=37% Similarity=0.537 Sum_probs=29.7
Q ss_pred ceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEeceee
Q 031394 36 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINL 74 (160)
Q Consensus 36 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN~ 74 (160)
.++.||-|.||+|.+.|..|.|.+|..+ .-+++-+.++
T Consensus 17 ~F~~GDHVkVi~G~~~getGlVV~v~~d-~v~v~SD~t~ 54 (69)
T 2do3_A 17 YFKMGDHVKVIAGRFEGDTGLIVRVEEN-FVILFSDLTM 54 (69)
T ss_dssp SCCTTCEEEESSSTTTTCEEEEEEECSS-CEEEEESSSC
T ss_pred eccCCCeEEEeccEEcCceEEEEEEeCC-EEEEEeCCCC
Confidence 5689999999999999999999999843 2334444444
No 17
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=96.49 E-value=0.003 Score=47.50 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=30.5
Q ss_pred ecCCEEEEeecCCCCeeeEEEEEEccCCeEEEe
Q 031394 38 KAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 38 ~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 70 (160)
.+||+|.|+.|+++|..|++++++.+...++|+
T Consensus 72 ~~g~~V~Iv~G~~rG~~g~L~~id~~~~~~~V~ 104 (127)
T 2ckk_A 72 APGKRILVLNGGYRGNEGTLESINEKTFSATIV 104 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred CCCCEEEEEecccCCcEEEEEEEeCCCcEEEEE
Confidence 689999999999999999999999997777776
No 18
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=96.15 E-value=0.0066 Score=52.63 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=33.0
Q ss_pred ccceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEe
Q 031394 34 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 34 k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 70 (160)
...+.+||+|.|++|+++|..|.|.+++.+++++.|.
T Consensus 296 ~~~f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~ 332 (352)
T 2xhc_A 296 ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVN 332 (352)
T ss_dssp -CCCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEE
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEE
Confidence 3456899999999999999999999999999888775
No 19
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=95.55 E-value=0.0022 Score=53.18 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=0.0
Q ss_pred ccceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEe
Q 031394 34 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 34 k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 70 (160)
...+.+||.|.|++|+++|-.|.|.+|+++++++.|.
T Consensus 192 ~~~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~ 228 (248)
T 1m1h_A 192 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVM 228 (248)
T ss_dssp -------------------------------------
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEE
Confidence 4466899999999999999999999999998887775
No 20
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=92.07 E-value=0.1 Score=37.27 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=31.1
Q ss_pred eecCCEEEEeecCCCCeeeEEEEEEccCCeEEEece
Q 031394 37 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDI 72 (160)
Q Consensus 37 I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGv 72 (160)
+.+|-.|.+++|+|+|+.-.|+.+. +.+.|+|.|-
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~i-D~~~vLV~gp 38 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDII-DDNFVLVTGP 38 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEEC-SSSCEEEECC
T ss_pred cccCEEEEEeecCCCCCEEEEEEEe-CCCEEEEECC
Confidence 5789999999999999999999996 5678999885
No 21
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=91.82 E-value=0.23 Score=38.24 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=34.6
Q ss_pred eecCCEEEEeecCCCCeeeEEEEEEccC------CeEEEeceeee
Q 031394 37 VKAGDTVKVIAGCDKGKIGEITKVFRHN------STVMVKDINLK 75 (160)
Q Consensus 37 I~kGD~V~Vi~GkdKGK~G~V~~V~~~~------~~V~VeGvN~~ 75 (160)
+.+|=-|.|++|++.|+...|+++.-+. +.++|.|+..-
T Consensus 5 ~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdry 49 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERS 49 (144)
T ss_dssp CCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEEC
T ss_pred ccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccC
Confidence 5789999999999999999999998765 89999998754
No 22
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=90.55 E-value=0.22 Score=37.86 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=31.9
Q ss_pred eecCCEEEEeecCCCCeeeEEEEEEccCCeEEEecee
Q 031394 37 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 73 (160)
Q Consensus 37 I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN 73 (160)
+.+|-.|.|..|+|.|+...|..|.- .|+|+|+|..
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD-~~rvLVdG~~ 42 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVD-QNRALVDAPD 42 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECS-SSEEEEEETT
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcC-CCeEEEeCCC
Confidence 47899999999999999999999966 5799999975
No 23
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=90.16 E-value=0.25 Score=37.84 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=31.7
Q ss_pred ceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEece
Q 031394 36 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDI 72 (160)
Q Consensus 36 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGv 72 (160)
-+.+|-.|.++.|+|.|+...|..|.- .|+|+|+|-
T Consensus 14 fve~GrVV~i~~Gr~aGk~avIV~iiD-~~rVLVDGp 49 (138)
T 3izc_N 14 LVEVGRVVLIKKGQSAGKLAAIVEIID-QKKVLIDGP 49 (138)
T ss_dssp CSSTTEEEECCSCSSSCCEEEEEEECS-SSEEEEECS
T ss_pred hcccCeEEEEeeCCCCCCEEEEEEEec-CCEEEEEcC
Confidence 357899999999999999999999965 589999985
No 24
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=89.34 E-value=0.24 Score=34.64 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=30.5
Q ss_pred eecCCEEEEeecCCCCeeeEEEEEEccCCeEEEece
Q 031394 37 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDI 72 (160)
Q Consensus 37 I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGv 72 (160)
+.+|-.|.+.+|+|+|+...|+.+.- .+.|+|.|-
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~iiD-~~~vlV~g~ 38 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDIID-KNFVLVTGA 38 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEECS-SSCEEEECC
T ss_pred cccCEEEEEeecCCCCCEEEEEEEcC-CCEEEEECC
Confidence 57899999999999999999999854 478999885
No 25
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.30 E-value=0.42 Score=32.72 Aligned_cols=31 Identities=35% Similarity=0.443 Sum_probs=25.5
Q ss_pred ecCCEEEEeecCCCCeeeEEEEEEccCCeEEEe
Q 031394 38 KAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 38 ~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 70 (160)
..|-+|.|..|++||-.|.|..+.. ..+.||
T Consensus 19 liGktV~I~kGpyKG~~GiVkd~t~--~~~RVE 49 (71)
T 2e70_A 19 LIGQTVRISQGPYKGYIGVVKDATE--STARVE 49 (71)
T ss_dssp STTSEEEECSSTTTTCEEEEEEECS--SCEEEE
T ss_pred cCCCEEEEeccCCCCeEEEEEECCC--CeEEEE
Confidence 3789999999999999999977766 445555
No 26
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=89.07 E-value=0.58 Score=35.27 Aligned_cols=36 Identities=25% Similarity=0.516 Sum_probs=31.1
Q ss_pred eecCCEEEEeecCCCCeeeEEEEEEccCCeEEEecee
Q 031394 37 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDIN 73 (160)
Q Consensus 37 I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGvN 73 (160)
+..|=-|.|..|++.|+...|..|.- .|+|+|+|-.
T Consensus 7 vevGRVv~i~~G~~aGklavIVdIID-~nrvLVdGp~ 42 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNIIN-QNRILIDGEH 42 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEET-TTEEEEEETT
T ss_pred eecceEEEEccCCccCCEEEEEEEec-CCeEEEeCCC
Confidence 46888888889999999999999965 4799999865
No 27
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=79.41 E-value=1 Score=36.89 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=45.8
Q ss_pred ceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEece---eeeeEEecCCccccCceeEEEeecCcCCCeee
Q 031394 36 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDI---NLKTKHVKKREEEEQGQIIKIEAPIHSSNVML 104 (160)
Q Consensus 36 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeGv---N~~kkh~k~~~~~~~ggiv~~e~PI~iSnV~L 104 (160)
.|.+|..+.+++|.+.|+.-.++.+. +.|.+.|.|= |-+..+ .-.+.-++....-|++|+|.+
T Consensus 74 si~pGtVlIil~Gr~~GKrvVfLkqL-~sgllLVtGP~~lNgVplr-----R~~qk~viaTstkIdIs~Vki 139 (219)
T 3iz5_G 74 TITPGTVLILLAGRYMGKRVVFLKQL-QSGLLLITGPFKINGVPIR-----RVNQAYVIATSTKVDISKVNV 139 (219)
T ss_dssp HCSCCSCEECSSSSSSCCEECEEEES-SSSSEEECCCCSSSCCCCE-----EESSSSCEECSCCCSCSSCCC
T ss_pred cccCCCEEEEeccccCCcEEEEEEec-CCCeEEEcCCccccCCccE-----EechhhEEecceEeecCcccc
Confidence 46899999999999999999999986 4889999873 333211 112234445566788888887
No 28
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=76.94 E-value=2.4 Score=28.87 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=30.6
Q ss_pred eecCCEEEEeecC--CCCeeeEEEEEEccC----CeEEEeceee
Q 031394 37 VKAGDTVKVIAGC--DKGKIGEITKVFRHN----STVMVKDINL 74 (160)
Q Consensus 37 I~kGD~V~Vi~Gk--dKGK~G~V~~V~~~~----~~V~VeGvN~ 74 (160)
|.+|+.|.|+.=. +-+.+|.|.+|+... -.|..|++|-
T Consensus 2 i~rGs~VrIlr~eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy 45 (70)
T 1qp2_A 2 VQRGSKVRILRPESYWFQDVGTVASVDQSGIKYPVIVRFEKVNY 45 (70)
T ss_dssp CCTTCEEEECCTTSTTTTCEEEEEEECCSSCSCSEEEECSSCCS
T ss_pred cCCCCEEEEcCccceeecceeEEEEEeCCCcEeeEEEEeccccc
Confidence 5899999999765 579999999999864 3466677775
No 29
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=75.64 E-value=1.6 Score=34.58 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=45.7
Q ss_pred ceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEec---eeeeeEEecCCccccCceeEEEeecCcCCCeee
Q 031394 36 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKD---INLKTKHVKKREEEEQGQIIKIEAPIHSSNVML 104 (160)
Q Consensus 36 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeG---vN~~kkh~k~~~~~~~ggiv~~e~PI~iSnV~L 104 (160)
.|.+|..+.+++|.++|+.-.+++... .|-+.|-| +|-+.. ..-.+.-++....-|++|+|.+
T Consensus 33 Si~pGtvlIil~Gr~~GkrvVfLKql~-sglllVTGP~~lNgvpl-----rR~~q~~vIaTstkidis~vki 98 (176)
T 3izc_G 33 SLVPGTVLILLAGRFRGKRVVYLKHLE-DNTLLISGPFKVNGVPL-----RRVNARYVIATSTKVSVEGVNV 98 (176)
T ss_dssp HCCCCSCEECCSSSSSCCCBEEEEESS-SSSEEEECCCSSSCCCC-----EEESSSSCEECSCCCSSSSCCC
T ss_pred cCCCCCEEEEeccccCCCEEEEEEecC-CCeEEEecCceecCCcc-----eeeecceEEeeeeeeecccccc
Confidence 578999999999999999999999974 77888877 333211 0112344455566788999887
No 30
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=75.55 E-value=2.7 Score=33.68 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=47.4
Q ss_pred ceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEec---eeeeeEEecCCccccCceeEEEeecCcCCCeeee
Q 031394 36 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKD---INLKTKHVKKREEEEQGQIIKIEAPIHSSNVMLY 105 (160)
Q Consensus 36 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~VeG---vN~~kkh~k~~~~~~~ggiv~~e~PI~iSnV~Lv 105 (160)
.|.+|..|.|++|.+.|+...+++... .+.++|-| +|-+. -..-.+.-++....-|++|+|.+-
T Consensus 44 si~pGtVlIiL~Gr~~GKrvV~LKql~-sgllLVtGP~~vn~vp-----lrrvn~~~vi~TstkvDis~vki~ 110 (191)
T 4a18_E 44 DIAPGTVLILLAGRFRGKRVVFLKQLK-SGLLLVTGPYKVNGVP-----LKRVNQAYTLSTSTKVDLTGVNTA 110 (191)
T ss_dssp TCCTTEEEEECSSTTTTBEEEEEEECT-TSCEEEECCTTTSSCC-----SEEECGGGEEEEEEECCCTTCCGG
T ss_pred cccCCCEEEEeccccCCCEEEEEEecC-CCeEEEecCccccCCc-----eEEEeeeeEEeeeeEeeccccccc
Confidence 578999999999999999999999975 58889988 23111 011123556667778899998873
No 31
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=74.40 E-value=0.0088 Score=45.32 Aligned_cols=30 Identities=20% Similarity=0.125 Sum_probs=21.5
Q ss_pred cceecCCEEEEeecCCCCeeeEEEEEEccC
Q 031394 35 MHVKAGDTVKVIAGCDKGKIGEITKVFRHN 64 (160)
Q Consensus 35 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~ 64 (160)
..+.+||+|.|++|+++|-.|.|.+++.++
T Consensus 108 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k 137 (162)
T 2oug_A 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEA 137 (162)
T ss_dssp -------CTTHHHHHHHHHHHHTTCSSHHH
T ss_pred CCCCCCCEEEEcccCCCCcEEEEEEECCCC
Confidence 356899999999999999999999998765
No 32
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=72.17 E-value=4.7 Score=33.76 Aligned_cols=39 Identities=28% Similarity=0.523 Sum_probs=30.1
Q ss_pred cccceecCCEEEEeecCCCCeeeEEEEEEccC---CeEEEec
Q 031394 33 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN---STVMVKD 71 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~---~~V~VeG 71 (160)
...++..|-.+.|+.|..-|.+|+|..+.+.. +.|.|++
T Consensus 171 d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd 212 (265)
T 3iz6_D 171 DFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVED 212 (265)
T ss_dssp EEECCSTTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEECC
T ss_pred eEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEE
Confidence 44567788889999999999999999998744 3555553
No 33
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=62.22 E-value=5.8 Score=28.41 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=36.6
Q ss_pred CCHHHHHhcCCCCCcccccc-ceecCCEEEEee------cC----CCCeeeEEEEEEccCCeEEEe
Q 031394 16 LKRWERKECKPNSLPVLHKM-HVKAGDTVKVIA------GC----DKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 16 l~~~lR~k~~~~~~~~~~k~-~I~kGD~V~Vi~------Gk----dKGK~G~V~~V~~~~~~V~Ve 70 (160)
||+..|+. | ..|+..++ .+++||.|-|.. |- +-|++|.|..+....-.|+|.
T Consensus 15 fsr~fR~~-G--~~pls~~m~~yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~AvgV~Vn 77 (96)
T 1vq8_Q 15 LKNKPRDR-G--TSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIV 77 (96)
T ss_dssp TSCCGGGC-S--SCCSHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEE
T ss_pred hCCCcccc-C--CCCHHHHHHHcCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCCEEEEEEe
Confidence 56666655 4 34555565 568999999874 31 679999999998876666665
No 34
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=61.95 E-value=5.3 Score=32.97 Aligned_cols=41 Identities=24% Similarity=0.352 Sum_probs=32.1
Q ss_pred ccccceecCCEEEEeecCCCCeeeEEEEEEcc----CCeEEEece
Q 031394 32 LHKMHVKAGDTVKVIAGCDKGKIGEITKVFRH----NSTVMVKDI 72 (160)
Q Consensus 32 ~~k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~----~~~V~VeGv 72 (160)
....++..|-.+.|+.|..-|.+|+|..+.+. .+.|.|++-
T Consensus 174 ~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d~ 218 (243)
T 3j20_E 174 LEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDE 218 (243)
T ss_dssp EEEEECCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEES
T ss_pred eeEEeccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEcC
Confidence 34567788999999999999999999988753 356777643
No 35
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=61.18 E-value=8.3 Score=31.22 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=31.8
Q ss_pred ccccceecCCEEEEeecCCCCeeeEEEEEEccC----CeEEEe
Q 031394 32 LHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN----STVMVK 70 (160)
Q Consensus 32 ~~k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~----~~V~Ve 70 (160)
....++..|-.+.|+.|..-|.+|+|..+.+.. +.|.|+
T Consensus 134 ~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~iV~v~ 176 (213)
T 3kbg_A 134 SEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQ 176 (213)
T ss_dssp EEEECCSTTCEEEECSSTTTTCEEEEEEECCCSCC--CEEEET
T ss_pred eeEEEcCCCCEEEEECCCcceEEEEEEEEEEccCCCCCEEEEE
Confidence 455677889999999999999999999997643 457776
No 36
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=60.38 E-value=14 Score=30.69 Aligned_cols=40 Identities=25% Similarity=0.472 Sum_probs=30.9
Q ss_pred ccccceecCCEEEEeecCCCCeeeEEEEEEccC---CeEEEec
Q 031394 32 LHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN---STVMVKD 71 (160)
Q Consensus 32 ~~k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~---~~V~VeG 71 (160)
....++..|-.+.|+.|..-|.+|+|..+.+.. +.|.|++
T Consensus 172 ~d~ikfe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd 214 (260)
T 2xzm_W 172 ENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKD 214 (260)
T ss_dssp ECCCBCCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEEC
T ss_pred eeEEEecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEe
Confidence 344567889999999999999999999866543 4566664
No 37
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P
Probab=58.53 E-value=7.6 Score=30.14 Aligned_cols=54 Identities=22% Similarity=0.446 Sum_probs=36.9
Q ss_pred Ccccccc-ceecCCEEEEee-cC---------CCCeeeEEEEEEcc----------CCeEEEeceeeeeEEecCC
Q 031394 29 LPVLHKM-HVKAGDTVKVIA-GC---------DKGKIGEITKVFRH----------NSTVMVKDINLKTKHVKKR 82 (160)
Q Consensus 29 ~~~~~k~-~I~kGD~V~Vi~-Gk---------dKGK~G~V~~V~~~----------~~~V~VeGvN~~kkh~k~~ 82 (160)
.|+..++ .+++||.|-|.. |. +-|++|.|..|... .++++..-+|+.--|++++
T Consensus 25 ~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v~gkil~KrI~VriEHik~s 99 (157)
T 4a17_P 25 VRISRYLTTYKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRSIGVIVHRIVNGRYIEKRLHVKIEHVRPS 99 (157)
T ss_dssp CCHHHHHCCCCTTCEEEECCCSSCCTTCCCGGGTTEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred CCHHHHHHHhcCCCEEEEeccCceecCCCCccccCCcccEeeecCeEEEEEEEEeECCEeeeeEEEEeHHHcccc
Confidence 5666666 568999998853 22 67999999865443 3555566677776677765
No 38
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=57.54 E-value=6.5 Score=28.16 Aligned_cols=52 Identities=17% Similarity=0.295 Sum_probs=34.1
Q ss_pred CCHHHHHhcCCCCCcccccc-ceecCCEEEEee-cC---------CCCeeeEEEEEEccCCeEEEe
Q 031394 16 LKRWERKECKPNSLPVLHKM-HVKAGDTVKVIA-GC---------DKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 16 l~~~lR~k~~~~~~~~~~k~-~I~kGD~V~Vi~-Gk---------dKGK~G~V~~V~~~~~~V~Ve 70 (160)
||+..|+. | ..|+..++ .+++||.|-|.. |. +-|++|.|..|-...-.|.|.
T Consensus 16 fsr~fRk~-G--~~pls~~m~~yk~Gd~VdIk~~gsvqKGmPhk~yHGkTG~V~~vt~~Avgv~Vn 78 (97)
T 3j21_R 16 LSKHPRRR-G--LPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGEAYIVEIK 78 (97)
T ss_dssp SCCCTTTC-S--SCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEE
T ss_pred hcCCcccc-C--CCcHHHHHHHhcCCCEEEEEecCceEcCCCCcccCCCCeEEEeecCcEEEEEEE
Confidence 44444433 3 34555665 568999998853 22 679999999887765555553
No 39
>3iz5_U 60S ribosomal protein L21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_U
Probab=57.32 E-value=3.1 Score=32.59 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=29.4
Q ss_pred Ccccccc-ceecCCEEEEee-cC---------CCCeeeEEEEEEccCCeEEEe
Q 031394 29 LPVLHKM-HVKAGDTVKVIA-GC---------DKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 29 ~~~~~k~-~I~kGD~V~Vi~-Gk---------dKGK~G~V~~V~~~~~~V~Ve 70 (160)
.|+..++ .+++||.|-|.. |. +-|++|.|..|....-.|+|.
T Consensus 25 ~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvt~~AvgV~Vn 77 (164)
T 3iz5_U 25 IPLTTYLRTYKVGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEIN 77 (164)
T ss_dssp CCTHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTEEEEEEEECSSSEEEEEE
T ss_pred CCHHHHHHHhCCCCEEEEEccCcccCCCCCcccCCCCeeEEeecCCEEEEEEE
Confidence 5556666 568999999862 22 679999998886655555544
No 40
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=57.25 E-value=6 Score=33.03 Aligned_cols=38 Identities=34% Similarity=0.504 Sum_probs=26.4
Q ss_pred cccceecCCEEEEeecCCCCeeeEEEEEEccC---CeEEEe
Q 031394 33 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHN---STVMVK 70 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~---~~V~Ve 70 (160)
...++..|-.+.|+.|..-|.+|+|..+.+.. +.|.|+
T Consensus 171 d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vk 211 (261)
T 3u5c_E 171 DFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIK 211 (261)
T ss_dssp EEECCCSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEE
T ss_pred eEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEE
Confidence 44566777778888888888888888887643 344444
No 41
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=55.57 E-value=19 Score=26.41 Aligned_cols=27 Identities=15% Similarity=-0.004 Sum_probs=17.2
Q ss_pred cceecCCEEEEeecCC-CCeeeEEEEEE
Q 031394 35 MHVKAGDTVKVIAGCD-KGKIGEITKVF 61 (160)
Q Consensus 35 ~~I~kGD~V~Vi~Gkd-KGK~G~V~~V~ 61 (160)
-.+++||.|.+..|.+ .=..-+|.+|.
T Consensus 90 ~~l~~GD~v~~~~~~~~~~~~~~V~~v~ 117 (145)
T 1at0_A 90 DRIEEKNQVLVRDVETGELRPQRVVKVG 117 (145)
T ss_dssp GGCCTTCEEEEECTTTCCEEEEEEEEEE
T ss_pred HHCcCCCEEEEecCCCCCEEEEEEEEEE
Confidence 3679999999998732 11334555553
No 42
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=54.99 E-value=13 Score=22.28 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=13.3
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+++||.|.|+.-.
T Consensus 16 ~eLs~~~Gd~i~v~~~~ 32 (58)
T 1zuy_A 16 SELPLKKGDVIYITREE 32 (58)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CcCCCCCCCEEEEEEec
Confidence 44667999999998754
No 43
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=50.62 E-value=19 Score=24.16 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=34.1
Q ss_pred eecCCEEEEeecC--CCCeeeEEEEEEccCCeEEEeceeeee
Q 031394 37 VKAGDTVKVIAGC--DKGKIGEITKVFRHNSTVMVKDINLKT 76 (160)
Q Consensus 37 I~kGD~V~Vi~Gk--dKGK~G~V~~V~~~~~~V~VeGvN~~k 76 (160)
|.+|-.|.|+.-. +-|-+|.|.+|...+--|+.||-|--|
T Consensus 2 ilPG~~V~V~np~~~Yy~y~G~VQRvsdgkaaVLFEGGnWDK 43 (66)
T 2jz2_A 2 IFPGATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFENGNWDK 43 (66)
T ss_dssp CCTTCEEEECCTTSTTBTCEEEEEEEETTEEEEEEESSSCEE
T ss_pred ccCCCEEEEeCCCCcccceeEEEEEecCCcEEEEecCCCcee
Confidence 4799999999775 679999999999988899999977543
No 44
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=50.23 E-value=11 Score=23.99 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=13.4
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.|.|+.-.
T Consensus 18 ~eLsf~~Gd~i~v~~~~ 34 (68)
T 2ew3_A 18 GELGFKEGDIITLTNQI 34 (68)
T ss_dssp TBCCBCTTCEEEEEEES
T ss_pred CccCCCCCCEEEEEEec
Confidence 45677999999999743
No 45
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=49.62 E-value=12 Score=22.73 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=13.4
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.+.|+.-.
T Consensus 19 ~eLs~~~Gd~i~v~~~~ 35 (59)
T 2g6f_X 19 DELSFSKGDVIHVTRVE 35 (59)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CCcCCCCCCEEEEEEec
Confidence 45677999999998743
No 46
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=47.11 E-value=19 Score=21.63 Aligned_cols=17 Identities=18% Similarity=0.491 Sum_probs=13.5
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.|.|+.-.
T Consensus 16 ~eLs~~~Gd~i~v~~~~ 32 (58)
T 1zuu_A 16 DEITITPGDKISLVARD 32 (58)
T ss_dssp TBCCBCTTCCEEEEECC
T ss_pred CcccCCCCCEEEEeEcC
Confidence 45677999999999754
No 47
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=47.10 E-value=14 Score=22.28 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=13.4
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.+.|+.-.
T Consensus 16 ~eLs~~~Gd~i~v~~~~ 32 (58)
T 1uti_A 16 DELGFRSGEVVEVLDSS 32 (58)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCCCCCCCCEEEEEEEC
Confidence 45677999999999743
No 48
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=47.02 E-value=1.2 Score=33.89 Aligned_cols=39 Identities=28% Similarity=0.301 Sum_probs=32.8
Q ss_pred eecCCEEEEeecCCCCeeeEEEEEEccC------CeEEEeceeee
Q 031394 37 VKAGDTVKVIAGCDKGKIGEITKVFRHN------STVMVKDINLK 75 (160)
Q Consensus 37 I~kGD~V~Vi~GkdKGK~G~V~~V~~~~------~~V~VeGvN~~ 75 (160)
+.+|--|.|++|.+.|+...|++...+. +.++|-|+..-
T Consensus 5 ~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaGIdry 49 (136)
T 3izc_a 5 LKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERY 49 (136)
T ss_dssp CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBCCSSS
T ss_pred ccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEecccC
Confidence 5899999999999999999999887654 37899997653
No 49
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=45.91 E-value=21 Score=22.29 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=13.2
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.|.|+.-.
T Consensus 18 ~eLs~~~Gd~i~v~~~~ 34 (69)
T 1ruw_A 18 SELPLKKGDIVFISRDE 34 (69)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CcccCCCCCEEEEEEec
Confidence 45667999999998643
No 50
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=44.98 E-value=15 Score=22.97 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=12.7
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.+.|+.-
T Consensus 18 ~eLsf~~Gd~i~v~~~ 33 (67)
T 2bzy_A 18 TALALEVGDIVKVTRM 33 (67)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CccccCCCCEEEEEEe
Confidence 3566799999999864
No 51
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=44.82 E-value=15 Score=23.09 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=13.3
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.|.|+.-.
T Consensus 16 ~eLs~~~Gd~i~v~~~~ 32 (65)
T 2nwm_A 16 KELTLQKGDIVYIHKEV 32 (65)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CccCCcCCCEEEEEEec
Confidence 35667999999998754
No 52
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=44.73 E-value=30 Score=23.68 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=27.8
Q ss_pred eecCCEEEEeecC--CCCeeeEEEEEEcc---CCeEEE--ecee
Q 031394 37 VKAGDTVKVIAGC--DKGKIGEITKVFRH---NSTVMV--KDIN 73 (160)
Q Consensus 37 I~kGD~V~Vi~Gk--dKGK~G~V~~V~~~---~~~V~V--eGvN 73 (160)
|.+||.|.|+.=. .-..+|+|.+|+.. +.-|+| +.+|
T Consensus 1 i~RGskVrIlR~ESYWyn~vGtVasVD~s~gi~YPV~VRFdkVN 44 (75)
T 1jb0_E 1 VQRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVN 44 (75)
T ss_dssp CCTTCEEEECCTTCTTBTCEEEEEEECCCTTCSCCEEEECSSCC
T ss_pred CCCCCEEEEccccceeecCcceEEEEecCCCccccEEEEEeeec
Confidence 4789999999765 57889999999986 343444 4555
No 53
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=44.63 E-value=29 Score=20.47 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=13.4
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.|.|+.-.
T Consensus 15 ~eLs~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 15 DEISIDPGDIITVIRGD 31 (54)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCccCCCCCEEEEEEec
Confidence 45667999999998754
No 54
>3izc_U 60S ribosomal protein RPL21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_U 3o58_T 3o5h_T 3u5e_T 3u5i_T 4b6a_T
Probab=44.58 E-value=14 Score=28.67 Aligned_cols=42 Identities=26% Similarity=0.419 Sum_probs=29.4
Q ss_pred Ccccccc-ceecCCEEEEee-cC---------CCCeeeEEEEEEccCCeEEEe
Q 031394 29 LPVLHKM-HVKAGDTVKVIA-GC---------DKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 29 ~~~~~k~-~I~kGD~V~Vi~-Gk---------dKGK~G~V~~V~~~~~~V~Ve 70 (160)
.|+..++ .+++||.|-|.. |. +-|++|.|..|....-.++|.
T Consensus 25 ~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVn 77 (160)
T 3izc_U 25 VHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIIN 77 (160)
T ss_dssp CCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEECSSSEEEEEC
T ss_pred CCHHHHHHHhcCCCEEEEeccCccCCCCCCcccCCCCeEEEeeCCcEEEEEEE
Confidence 5666666 668999999853 22 679999999876655445553
No 55
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=44.57 E-value=16 Score=21.91 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=13.0
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 17 ~eLs~~~Gd~i~v~~~ 32 (58)
T 2vwf_A 17 GELGFRRGDFIHVMDN 32 (58)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCcCCCCCCEEEEEEc
Confidence 4567799999999974
No 56
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=44.45 E-value=16 Score=22.47 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=13.4
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.+.|+.-.
T Consensus 21 ~eLs~~~Gd~i~v~~~~ 37 (64)
T 2ak5_A 21 DELSFSKGDVIHVTRVE 37 (64)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CcccCCCCCEEEEeEec
Confidence 45677999999998743
No 57
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=44.02 E-value=21 Score=21.53 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=12.8
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 18 ~eLs~~~Gd~i~v~~~ 33 (60)
T 2x3w_D 18 DELSFKAGDELTKLGE 33 (60)
T ss_dssp SBCCBCTTCEEEECSC
T ss_pred CcccCCCCCEEEEEEc
Confidence 4567799999999864
No 58
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=43.47 E-value=17 Score=22.09 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=13.4
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.|.|+.-.
T Consensus 20 ~eLs~~~Gd~i~v~~~~ 36 (60)
T 2xmf_A 20 DELSFNANDIIDIIKED 36 (60)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CCcCCCCCCEEEEEEec
Confidence 45677999999998743
No 59
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=43.45 E-value=17 Score=22.15 Aligned_cols=16 Identities=13% Similarity=0.295 Sum_probs=12.8
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.+.|+.-
T Consensus 21 ~eLs~~~Gd~i~v~~~ 36 (60)
T 2gnc_A 21 RELSFKKGASLLLYHR 36 (60)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CCcCCCCCCEEEEEEe
Confidence 4567799999999874
No 60
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=42.80 E-value=22 Score=24.38 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=17.4
Q ss_pred ecCCEEEEeecC--------------CCCeeeEEEEEEc
Q 031394 38 KAGDTVKVIAGC--------------DKGKIGEITKVFR 62 (160)
Q Consensus 38 ~kGD~V~Vi~Gk--------------dKGK~G~V~~V~~ 62 (160)
+.||+|.|.+.- -+|.+|+|.++..
T Consensus 2 k~GdrVrV~~sv~Vyh~P~~r~~~fDl~GmEGeV~~~v~ 40 (75)
T 1dj7_B 2 NVGDRVRVTSSVVVYHHPEHKKTAFDLQGMEGEVAAVLT 40 (75)
T ss_dssp CTTCEEEECSCCEESCCTTSTTSCEECTTCEEEEEEECS
T ss_pred CCCCEEEEcccEEEEeCCccCCCCcccccCEEEEEEEEe
Confidence 579999987532 3677777777653
No 61
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=42.75 E-value=31 Score=20.59 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.4
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.|.|+.-.
T Consensus 17 ~eLs~~~Gd~i~v~~~~ 33 (58)
T 1sem_A 17 GELAFKRGDVITLINKD 33 (58)
T ss_dssp TBCCBCTTCEEEEEECS
T ss_pred CCcCCCCCCEEEEEEec
Confidence 45677999999999753
No 62
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=42.51 E-value=18 Score=22.04 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=13.3
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.|.|+.-.
T Consensus 19 ~eLs~~~Gd~i~v~~~~ 35 (60)
T 1w70_A 19 LELNFKAGDVIFLLSRI 35 (60)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CCccCCCCCEEEEEEeC
Confidence 34677999999998743
No 63
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=42.39 E-value=24 Score=22.64 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=18.4
Q ss_pred cCCHHHHHhcCCCCCccccccceecCCEEEEeecC
Q 031394 15 RLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 15 ~l~~~lR~k~~~~~~~~~~k~~I~kGD~V~Vi~Gk 49 (160)
.||+++|.+++ |..||.|.+..-.
T Consensus 25 tIPkeiR~~Lg-----------i~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 25 VIPIELRRTLG-----------IAEKDALEIYVDD 48 (59)
T ss_dssp ECCHHHHHHTT-----------CCTTCEEEEEEET
T ss_pred EeCHHHHHHcC-----------CCCCCEEEEEEEC
Confidence 57889998874 4789999887643
No 64
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=42.34 E-value=17 Score=23.08 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=13.5
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+++||.+.|+.-.
T Consensus 28 ~eLs~~~Gd~i~v~~~~ 44 (73)
T 3c0c_A 28 GELGFREGDLITLTNQI 44 (73)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CCccCcCCCEEEEEEec
Confidence 45677999999998743
No 65
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=41.81 E-value=18 Score=23.29 Aligned_cols=15 Identities=13% Similarity=0.474 Sum_probs=12.5
Q ss_pred cccceecCCEEEEee
Q 031394 33 HKMHVKAGDTVKVIA 47 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~ 47 (160)
..+.+.+||.|.|+.
T Consensus 22 ~eLs~~~Gd~i~v~~ 36 (78)
T 2yuo_A 22 DELGFRKNDIITIIS 36 (78)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CCccCCCCCEEEEEE
Confidence 456779999999997
No 66
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=41.65 E-value=23 Score=26.47 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=22.0
Q ss_pred ccceecCCEEEEeecC----------CCCeeeEEEEEE
Q 031394 34 KMHVKAGDTVKVIAGC----------DKGKIGEITKVF 61 (160)
Q Consensus 34 k~~I~kGD~V~Vi~Gk----------dKGK~G~V~~V~ 61 (160)
...+..||+|.|..-. -+|++|+|..+.
T Consensus 34 ~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~ 71 (126)
T 2zzd_A 34 KSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLV 71 (126)
T ss_dssp SCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEE
T ss_pred CCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEe
Confidence 4567899999998544 479999997765
No 67
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=41.49 E-value=22 Score=21.67 Aligned_cols=16 Identities=6% Similarity=0.420 Sum_probs=13.1
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 21 ~eLs~~~Gd~i~v~~~ 36 (62)
T 2iim_A 21 GDLGFEKGEQLRILEQ 36 (62)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCcCCCCCCEEEEEEc
Confidence 4567799999999975
No 68
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=41.32 E-value=1.3 Score=33.81 Aligned_cols=38 Identities=24% Similarity=0.428 Sum_probs=32.1
Q ss_pred eecCCEEEEeecCCCCeeeEEEEEEccC------CeEEEeceee
Q 031394 37 VKAGDTVKVIAGCDKGKIGEITKVFRHN------STVMVKDINL 74 (160)
Q Consensus 37 I~kGD~V~Vi~GkdKGK~G~V~~V~~~~------~~V~VeGvN~ 74 (160)
+.+|--|.|++|.+.|+...|++...+. +.++|-|+..
T Consensus 5 ~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaGIdr 48 (136)
T 3iz5_a 5 LKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAK 48 (136)
T ss_dssp CCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBCCST
T ss_pred ccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEeecc
Confidence 5899999999999999999999887554 3788988764
No 69
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.26 E-value=18 Score=23.22 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=12.4
Q ss_pred cccceecCCEEEEee
Q 031394 33 HKMHVKAGDTVKVIA 47 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~ 47 (160)
..+.+.+||.|.|+.
T Consensus 29 ~eLsf~~Gd~i~v~~ 43 (75)
T 2ege_A 29 GRLALRAGDVVMVYG 43 (75)
T ss_dssp CBCCBCTTCEEEEES
T ss_pred CcceECCCCEEEEeE
Confidence 456779999999995
No 70
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=40.82 E-value=20 Score=24.82 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=19.0
Q ss_pred ceecCCEEEEeecCCCCeeeEEEEEEc
Q 031394 36 HVKAGDTVKVIAGCDKGKIGEITKVFR 62 (160)
Q Consensus 36 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~ 62 (160)
.|..||+|.|..| ++.|+|..|=+
T Consensus 5 ~i~vG~Rv~v~~~---~~~G~VryvG~ 28 (84)
T 4b6m_A 5 TIHVGDRCLCRPG---DRLGSVRFVGR 28 (84)
T ss_dssp CCCTTCEEEETTT---TEEEEEEEEEE
T ss_pred CcccCCEEEEcCC---CeEEEEEEEec
Confidence 4688999999554 57899998864
No 71
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.40 E-value=21 Score=22.25 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=12.9
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (68)
T 1x2k_A 22 DELYFEEGDIIYITDM 37 (68)
T ss_dssp TBCCCCSSCEEEEEEC
T ss_pred CcccCCCCCEEEEEEc
Confidence 4567799999999864
No 72
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=40.26 E-value=34 Score=21.26 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=12.8
Q ss_pred ccceecCCEEEEeec
Q 031394 34 KMHVKAGDTVKVIAG 48 (160)
Q Consensus 34 k~~I~kGD~V~Vi~G 48 (160)
.+.+++||.+.|+.-
T Consensus 26 eLsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 26 FLRLNPGDIVELTKA 40 (70)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred cCCcCCCCEEEEEeC
Confidence 567799999999976
No 73
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.07 E-value=20 Score=22.73 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=12.3
Q ss_pred cccceecCCEEEEee
Q 031394 33 HKMHVKAGDTVKVIA 47 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~ 47 (160)
..+.+.+||.|.|+.
T Consensus 24 ~eLs~~~Gd~i~v~~ 38 (72)
T 2dl8_A 24 RELSFKKGASLLLYQ 38 (72)
T ss_dssp SBCCBCTTCEEEEEE
T ss_pred CEeccCCCCEEEEEe
Confidence 456779999999986
No 74
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=40.04 E-value=33 Score=21.94 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=13.8
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.|.|+.-.
T Consensus 33 ~eLsf~~Gd~i~v~~~~ 49 (78)
T 1k1z_A 33 GFLRLNPGDIVELTKAE 49 (78)
T ss_dssp CCCCBCTTCEEEEEECC
T ss_pred CccCCCCCCEEEEEEcC
Confidence 45677999999999763
No 75
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=39.68 E-value=16 Score=22.91 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=12.2
Q ss_pred ccceecCCEEEEeec
Q 031394 34 KMHVKAGDTVKVIAG 48 (160)
Q Consensus 34 k~~I~kGD~V~Vi~G 48 (160)
.+.+++||.|.|+.-
T Consensus 24 eLs~~~Gd~i~v~~~ 38 (67)
T 2eyx_A 24 ALALEVGELVKVTKI 38 (67)
T ss_dssp BCCBCSSEEEEEEEE
T ss_pred ccccCCCCEEEEEEe
Confidence 566799999999864
No 76
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=39.66 E-value=19 Score=22.99 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=12.6
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 25 ~eLs~~~Gd~i~v~~~ 40 (74)
T 1j3t_A 25 NHLNFSKHDIITVLEQ 40 (74)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CccCCCCCCEEEEEec
Confidence 3467799999999863
No 77
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=39.39 E-value=22 Score=21.58 Aligned_cols=15 Identities=13% Similarity=0.607 Sum_probs=12.5
Q ss_pred cccceecCCEEEEee
Q 031394 33 HKMHVKAGDTVKVIA 47 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~ 47 (160)
..+.+.+||.|.|+.
T Consensus 20 ~eLs~~~Gd~i~v~~ 34 (63)
T 3eg3_A 20 NTLSITKGEKLRVLG 34 (63)
T ss_dssp SBCCBCTTCEEEEEE
T ss_pred CccCCCCCCEEEEEE
Confidence 456779999999987
No 78
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=39.16 E-value=24 Score=21.84 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=12.8
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (68)
T 2dl3_A 22 KELPLQKGDIVYIYKQ 37 (68)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCccCCCCCEEEEeEe
Confidence 4567799999999874
No 79
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=38.80 E-value=44 Score=21.67 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=19.6
Q ss_pred ceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEe
Q 031394 36 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 36 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 70 (160)
.++.||+|.| +|++++++++++.+.
T Consensus 45 ~~~~Gd~V~v----------~V~~vd~~~~~i~ls 69 (80)
T 2k52_A 45 NLNVGDEIIV----------QAIDVRPEKREIDFK 69 (80)
T ss_dssp GCCTTCEEEE----------EEEEEETTTTEEEEE
T ss_pred eeCCCCEEEE----------EEEEEECCCCEEEEE
Confidence 4689999987 788888887777654
No 80
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1
Probab=38.63 E-value=25 Score=22.06 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=12.6
Q ss_pred cccceecCCEEEEee
Q 031394 33 HKMHVKAGDTVKVIA 47 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~ 47 (160)
..+.+.+||.|.|+.
T Consensus 26 ~eLs~~~Gd~i~v~~ 40 (71)
T 1csk_A 26 QDLPFCKGDVLTIVA 40 (71)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CcCCCCCCCEEEEeE
Confidence 456779999999988
No 81
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=38.58 E-value=43 Score=28.19 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=27.6
Q ss_pred cCCEEEEeecCCCCeeeEEEEEEccCCeEEEe
Q 031394 39 AGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 39 kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 70 (160)
.|....|++|.-||..|.|+-=.---+.|+|+
T Consensus 86 iGN~A~VvSG~AKG~~G~VtGkHGGieHVlV~ 117 (284)
T 3dcl_A 86 IGNEVIVMSGDAKGSRGFVTGKHGGVNHVLVH 117 (284)
T ss_dssp BTCEEEECSSTTTTCEEEEEEEETTTTEEEEE
T ss_pred cCceeEEeecccCCCcceEecccCCeeeEEEE
Confidence 59999999999999999998876666777776
No 82
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=38.04 E-value=35 Score=20.89 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=18.5
Q ss_pred cCCHHHHHhcCCCCCccccccceecCCEEEEeecCC
Q 031394 15 RLKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCD 50 (160)
Q Consensus 15 ~l~~~lR~k~~~~~~~~~~k~~I~kGD~V~Vi~Gkd 50 (160)
.|++++|.+++ |..||.|.+..-.+
T Consensus 15 ~IPk~ir~~lg-----------i~~Gd~v~i~~~~~ 39 (53)
T 2l66_A 15 TIPAKVRQKFQ-----------IKEGDLVKVTFDES 39 (53)
T ss_dssp CCCHHHHHHSC-----------CCTTCEEEEEECSS
T ss_pred EeCHHHHHHcC-----------cCCCCEEEEEEECC
Confidence 57888888863 47899999876443
No 83
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.30 E-value=22 Score=22.81 Aligned_cols=16 Identities=13% Similarity=0.451 Sum_probs=12.8
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 25 ~eLs~~~Gd~i~v~~~ 40 (76)
T 2epd_A 25 QELSFRRGDVLRLHER 40 (76)
T ss_dssp TBCEECTTCEEEEEEE
T ss_pred CccCCCCCCEEEEEEe
Confidence 4567799999999864
No 84
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.04 E-value=38 Score=21.76 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=13.5
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+++||.|.|+.-.
T Consensus 32 ~eLsf~~Gd~i~v~~~~ 48 (80)
T 2d8h_A 32 GDLNFQAGDRITVISKT 48 (80)
T ss_dssp TBCEECTTCEEEEEECC
T ss_pred CeeeEcCCCEEEEeECc
Confidence 35677999999998754
No 85
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=36.98 E-value=24 Score=22.48 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=12.9
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.=
T Consensus 17 ~eLs~~~Gd~i~vl~~ 32 (69)
T 2ydl_A 17 DELTIKEGDIVTLINK 32 (69)
T ss_dssp TBCCBCTTCEEEEEES
T ss_pred CccccCCCCEEEEEEc
Confidence 4567799999999864
No 86
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=36.65 E-value=28 Score=22.37 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=12.7
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 20 ~eLs~~~Gd~i~v~~~ 35 (73)
T 2lcs_A 20 NELRLAEGDIVFISYK 35 (73)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CccCCcCCCEEEEEEE
Confidence 4567799999999863
No 87
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=36.56 E-value=32 Score=24.04 Aligned_cols=27 Identities=19% Similarity=0.062 Sum_probs=20.0
Q ss_pred ceecCCEEEEe-ecCCCCeeeEEEEEEc
Q 031394 36 HVKAGDTVKVI-AGCDKGKIGEITKVFR 62 (160)
Q Consensus 36 ~I~kGD~V~Vi-~GkdKGK~G~V~~V~~ 62 (160)
.|..||+|.|. .|...+..|+|..|=+
T Consensus 7 ~~~VG~rV~V~~~~~~~~~~GtVryvG~ 34 (95)
T 1whl_A 7 GIDVGCPVKVQLRSGEEKFPGVVRFRGP 34 (95)
T ss_dssp CCCSSCEEEEECSSSSCEEEEEEEEECC
T ss_pred cCcCCCEEEEecCCCccceeEEEEEeCc
Confidence 35889999997 3433468899988854
No 88
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=35.81 E-value=24 Score=21.63 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=12.6
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (65)
T 1w1f_A 22 DDLSFKKGEKMKVLEE 37 (65)
T ss_dssp SCCCBCTTCEEEEEEE
T ss_pred CcCCCCCCCEEEEEEc
Confidence 4566799999999864
No 89
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=35.38 E-value=26 Score=22.09 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=13.0
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 24 ~eLs~~~Gd~i~v~~~ 39 (73)
T 2k9g_A 24 DELTIKEGDIVTLINK 39 (73)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CeeeECCCCEEEEEEC
Confidence 4567799999999864
No 90
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.36 E-value=28 Score=22.54 Aligned_cols=16 Identities=38% Similarity=0.698 Sum_probs=12.8
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 25 ~eLs~~~Gd~i~v~~~ 40 (81)
T 2ysq_A 25 RELAFKAGDVIKVLDA 40 (81)
T ss_dssp SSCCCCTTCEEEEEEC
T ss_pred CcCCCCCCCEEEEEEE
Confidence 4467799999999874
No 91
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=34.53 E-value=26 Score=20.92 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=12.4
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 16 ~eLs~~~Gd~i~v~~~ 31 (59)
T 1yn8_A 16 NELRLAEGDIVFISYK 31 (59)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CCcCCCCCCEEEEEEc
Confidence 3566799999999863
No 92
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=34.37 E-value=31 Score=22.03 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=13.9
Q ss_pred ccccceecCCEEEEeecC
Q 031394 32 LHKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 32 ~~k~~I~kGD~V~Vi~Gk 49 (160)
...+.+.+||.|.|+.-.
T Consensus 25 ~~eLs~~~Gd~i~v~~~~ 42 (73)
T 2ebp_A 25 TDSLKLKKGDIIDIISKP 42 (73)
T ss_dssp CSBCCBCSSCEEEEEECC
T ss_pred CCccCCCCCCEEEEEEeC
Confidence 345677999999999743
No 93
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=34.23 E-value=32 Score=21.60 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=12.4
Q ss_pred cccceecCCEEEEee
Q 031394 33 HKMHVKAGDTVKVIA 47 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~ 47 (160)
..+.+.+||.|.|+.
T Consensus 23 ~eLs~~~Gd~i~v~~ 37 (69)
T 1uhf_A 23 GDLTFTEGEEILVTQ 37 (69)
T ss_dssp SBCCBCTTCEEEECE
T ss_pred CccCCCCCCEEEEEE
Confidence 456779999999986
No 94
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=34.12 E-value=40 Score=24.31 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=20.5
Q ss_pred eecCCEEEEeecCCCCeeeEEEEEEccC
Q 031394 37 VKAGDTVKVIAGCDKGKIGEITKVFRHN 64 (160)
Q Consensus 37 I~kGD~V~Vi~GkdKGK~G~V~~V~~~~ 64 (160)
|.+||.|.|-.-++-...|.|..+++..
T Consensus 71 i~~GD~V~ve~~~~~~~kG~I~~~~~r~ 98 (117)
T 2oqk_A 71 VNPGDIVLVSLRDFQDSKGDIILKYTPD 98 (117)
T ss_dssp CCTTCEEEEEECTTCTTEEEEEEECCHH
T ss_pred CCCCCEEEEEEEcCCCCeEEEEEEechH
Confidence 3699999997554444578998887643
No 95
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.15 E-value=30 Score=21.86 Aligned_cols=16 Identities=6% Similarity=0.412 Sum_probs=13.0
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 23 ~eLsf~~Gd~i~v~~~ 38 (73)
T 2dl7_A 23 DELSFPEGAIIRILNK 38 (73)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CcCCCCCCCEEEEEEC
Confidence 4567799999999974
No 96
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=33.08 E-value=38 Score=21.82 Aligned_cols=16 Identities=19% Similarity=0.437 Sum_probs=13.0
Q ss_pred ccceecCCEEEEeecC
Q 031394 34 KMHVKAGDTVKVIAGC 49 (160)
Q Consensus 34 k~~I~kGD~V~Vi~Gk 49 (160)
.+.+++||.+.|+.=.
T Consensus 24 ELsf~~Gd~i~Vl~~~ 39 (69)
T 1nm7_A 24 EVALKKGDLMAILSKK 39 (69)
T ss_dssp CCCCCTTCEEEECCSS
T ss_pred ccCCCCCCEEEEEecC
Confidence 5677999999999643
No 97
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=33.03 E-value=38 Score=27.30 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=26.4
Q ss_pred ceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEe
Q 031394 36 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 36 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 70 (160)
.++.||.|.|..|...--.++|..+.++.-.+.+.
T Consensus 35 Rl~~Gd~v~l~dg~g~~~~a~I~~~~~~~~~~~i~ 69 (257)
T 1vhy_A 35 RMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEIL 69 (257)
T ss_dssp CCCTTCEEEEECSSSEEEEEEEEEECSSCEEEEEC
T ss_pred ccCCCCEEEEEcCCCCEEEEEEEEeeCCeEEEEEE
Confidence 44999999999886555668899888766555554
No 98
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=32.81 E-value=41 Score=27.21 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=22.6
Q ss_pred cccceecCCEEEEeecC----------CCCeeeEEEEEE
Q 031394 33 HKMHVKAGDTVKVIAGC----------DKGKIGEITKVF 61 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk----------dKGK~G~V~~V~ 61 (160)
..-.+..||+|.|..-. -+|++|+|..+.
T Consensus 135 ~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~Rgk~G~I~~~~ 173 (226)
T 1ugp_B 135 RPPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHH 173 (226)
T ss_dssp SCCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEE
T ss_pred CCCcCCCCCeEEEccCCCCCcccccHHhCCCeEEEEEEe
Confidence 34578999999998544 479999998765
No 99
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=32.74 E-value=39 Score=27.10 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=32.1
Q ss_pred CCHHHHHhcCCCCCccccccceecCCEEEEeecCCCCeeeEEEEEEccCCeEEE
Q 031394 16 LKRWERKECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 69 (160)
Q Consensus 16 l~~~lR~k~~~~~~~~~~k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~V 69 (160)
|+.+ ...|=.+-+.+ +.||.|.|..|...=-.++|.++.++.-.+.+
T Consensus 20 L~~~-~~~Hl~~VLR~------~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i 66 (251)
T 4e8b_A 20 LCED-AANHIGRVLRM------GPGQALQLFDGSNQVFDAEITSASKKSVEVKV 66 (251)
T ss_dssp CCHH-HHHHHHTTSCC------CSCCEEEEECSSSEEEEEEEEEECSSCEEEEE
T ss_pred eCHH-HHHHHHHhCcC------CCCCEEEEEeCCCcEEEEEEEEeecceEEEEE
Confidence 4443 34453444444 99999999999766567899998876655544
No 100
>3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_Q
Probab=32.69 E-value=6.9 Score=28.97 Aligned_cols=54 Identities=30% Similarity=0.506 Sum_probs=35.1
Q ss_pred Ccccccc-ceecCCEEEEee-cC---------CCCeeeEEEEEEccCCeEEE----------eceeeeeEEecCC
Q 031394 29 LPVLHKM-HVKAGDTVKVIA-GC---------DKGKIGEITKVFRHNSTVMV----------KDINLKTKHVKKR 82 (160)
Q Consensus 29 ~~~~~k~-~I~kGD~V~Vi~-Gk---------dKGK~G~V~~V~~~~~~V~V----------eGvN~~kkh~k~~ 82 (160)
.|+..++ .+++||.|-|.. |. +-|++|.|..|....-.|+| .-+|+.--|++++
T Consensus 24 ~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGKTGrV~nvt~~AvgivVnkqv~gKil~KrInVriEHik~s 98 (116)
T 3jyw_Q 24 VHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHS 98 (116)
T ss_dssp CCSSTTTCCCCTTCBCCBCCCSSSCTTCCCSTTSSCCCBCCCCCSSSSSEEEECCCSSSSCCCEEEECGGGBCCC
T ss_pred CCHHHHHHHhCCCCEEEEeccCccCCCCCCcccCCCCeEEEeecCcEEEEEEEEEECCeeeeeEEEECHhHCccc
Confidence 5666666 568999998752 21 67999999776655444454 3455555666654
No 101
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=32.66 E-value=35 Score=27.46 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=22.2
Q ss_pred cccceecCCEEEEeecC----------CCCeeeEEEEEE
Q 031394 33 HKMHVKAGDTVKVIAGC----------DKGKIGEITKVF 61 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk----------dKGK~G~V~~V~ 61 (160)
..-.+..||+|.|..-. -+|++|+|..+.
T Consensus 127 ~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~ 165 (219)
T 3qyh_B 127 ARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDH 165 (219)
T ss_dssp SCCCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEE
T ss_pred CCCCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEe
Confidence 44568999999997543 479999997664
No 102
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.17 E-value=27 Score=21.85 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=12.7
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.+.|+.=
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (68)
T 2dmo_A 22 EELQVMPGNIVFVLKK 37 (68)
T ss_dssp SSCCCCTTCEEEECEE
T ss_pred CCCCCCCCCEEEEEEe
Confidence 4567799999999853
No 103
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=32.16 E-value=58 Score=19.49 Aligned_cols=17 Identities=12% Similarity=0.436 Sum_probs=13.5
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.|.|+.-.
T Consensus 18 ~eLs~~~Gd~i~v~~~~ 34 (60)
T 1oot_A 18 GDLPFRKGDVITILKKS 34 (60)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CEeeEcCCCEEEEEEeC
Confidence 45677999999999754
No 104
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}
Probab=32.05 E-value=22 Score=22.41 Aligned_cols=16 Identities=19% Similarity=0.495 Sum_probs=12.6
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 16 ~eLs~~~Gd~i~v~~~ 31 (65)
T 2fei_A 16 DELELKVGDIIDINEE 31 (65)
T ss_dssp TBCCCCTTCEEECCCC
T ss_pred CccCCCCCCEEEEEEe
Confidence 4567799999999863
No 105
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.88 E-value=28 Score=22.77 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=12.5
Q ss_pred cccceecCCEEEEee
Q 031394 33 HKMHVKAGDTVKVIA 47 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~ 47 (160)
..+.+.+||.|.|+.
T Consensus 23 ~eLsf~~Gd~i~v~~ 37 (85)
T 2dlp_A 23 SLLSFHRGDLIKLLP 37 (85)
T ss_dssp SBCCBCTTCEEEECC
T ss_pred CCccCcCCCEEEEEE
Confidence 456779999999996
No 106
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}
Probab=31.67 E-value=32 Score=21.39 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=12.9
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 23 ~eLs~~~Gd~i~v~~~ 38 (69)
T 2dil_A 23 DELDLSAGDILEVILE 38 (69)
T ss_dssp SSCCBCTTCEEEEEEC
T ss_pred CccCCCCCCEEEEEEC
Confidence 4567799999999864
No 107
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=31.31 E-value=38 Score=27.47 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=21.6
Q ss_pred ccceecCCEEEEeecC----------CCCeeeEEEEEE
Q 031394 34 KMHVKAGDTVKVIAGC----------DKGKIGEITKVF 61 (160)
Q Consensus 34 k~~I~kGD~V~Vi~Gk----------dKGK~G~V~~V~ 61 (160)
...+..||+|.|..-. -+|++|+|..+.
T Consensus 139 ~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~ 176 (229)
T 3hht_B 139 SPRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVY 176 (229)
T ss_dssp CCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEE
T ss_pred CCCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEe
Confidence 4568999999997543 479999997763
No 108
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.14 E-value=53 Score=20.79 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=13.3
Q ss_pred ccccceecCCEEEEeec
Q 031394 32 LHKMHVKAGDTVKVIAG 48 (160)
Q Consensus 32 ~~k~~I~kGD~V~Vi~G 48 (160)
...+.+.+||.|.|+.-
T Consensus 24 ~~eLs~~~Gd~i~v~~~ 40 (77)
T 2enm_A 24 NNELTVTEGEIITVTNP 40 (77)
T ss_dssp SSBCCCCTTCEEEEEES
T ss_pred CCeecCCCCCEEEEeEc
Confidence 34567799999999874
No 109
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=31.02 E-value=53 Score=21.02 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=13.5
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+++||.|.|+.=.
T Consensus 28 ~eLs~~~Gd~i~vl~~~ 44 (79)
T 1uhc_A 28 NELSVSANQKLKILEFK 44 (79)
T ss_dssp SBCCBCTTCEEEEEESC
T ss_pred CccCCCCCCEEEEEECC
Confidence 45678999999999743
No 110
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=30.90 E-value=35 Score=27.05 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=27.9
Q ss_pred cccceecCCEEEEeecC------------CCCeeeEEEEEEccCCeEEEece
Q 031394 33 HKMHVKAGDTVKVIAGC------------DKGKIGEITKVFRHNSTVMVKDI 72 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk------------dKGK~G~V~~V~~~~~~V~VeGv 72 (160)
..|-|++||.|.|+... ..|..|..+.|....++ +|.|.
T Consensus 137 ~~~lV~rG~~V~i~~~~~g~~i~~~G~AL~~G~~Gd~IrVr~~Sgk-iv~g~ 187 (219)
T 3tee_A 137 QAWRVKAGQRVQVIANGEGFSVNAEGQAMNNAAVAQNARVRMTSGQ-IVSGT 187 (219)
T ss_dssp ECCSBCTTCEEEEEEECSSCEEEEEEEECSCBCTTSEEEEEETTSC-EEEEE
T ss_pred cccEEcCCCEEEEEEecCCEEEEEEEEEccccCCCCEEEEECCCCC-EEEEE
Confidence 45789999999999655 56788888888655554 44543
No 111
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=30.39 E-value=48 Score=20.66 Aligned_cols=14 Identities=7% Similarity=0.280 Sum_probs=11.5
Q ss_pred ccceecCCEEEEee
Q 031394 34 KMHVKAGDTVKVIA 47 (160)
Q Consensus 34 k~~I~kGD~V~Vi~ 47 (160)
.+.+.+||.|.|+.
T Consensus 23 eLsf~~Gd~i~v~~ 36 (70)
T 2vkn_A 23 EISFEQNEILQVSD 36 (70)
T ss_dssp BCCBCTTCEEEEEC
T ss_pred cccCCCCCEEEEEE
Confidence 56679999999875
No 112
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=30.29 E-value=31 Score=22.31 Aligned_cols=15 Identities=27% Similarity=0.632 Sum_probs=12.5
Q ss_pred cccceecCCEEEEee
Q 031394 33 HKMHVKAGDTVKVIA 47 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~ 47 (160)
..+.+.+||.|.|+.
T Consensus 32 ~eLsf~~Gd~i~Vl~ 46 (72)
T 2l0a_A 32 NELTFKAGEIITVLD 46 (72)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CccCCCCCCEEEEEE
Confidence 456779999999996
No 113
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A
Probab=30.18 E-value=31 Score=22.38 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=12.6
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 40 ~eLs~~~Gd~i~v~~~ 55 (86)
T 2oi3_A 40 EDLSFQKGDQMVVLEE 55 (86)
T ss_dssp SCCCCCTTCEEEEEEE
T ss_pred CcCcCCCCCEEEEEEc
Confidence 4567799999999864
No 114
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Probab=30.02 E-value=22 Score=22.48 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=13.4
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.+.|+.-.
T Consensus 22 ~eLs~~~Gd~i~v~~~~ 38 (73)
T 2dbm_A 22 GELGFKEGDIITLTNQI 38 (73)
T ss_dssp TCCCBCTTCEEECCBCS
T ss_pred CCccCCCCCEEEEEEec
Confidence 45677999999998743
No 115
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=29.91 E-value=65 Score=19.50 Aligned_cols=16 Identities=13% Similarity=0.524 Sum_probs=13.0
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 21 ~eLs~~~Gd~i~v~~~ 36 (64)
T 2jte_A 21 DELTFREGEIIHLISK 36 (64)
T ss_dssp SBCCBCTTCEEEEEES
T ss_pred CccCCCCCCEEEEEEC
Confidence 4567799999999864
No 116
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.90 E-value=35 Score=21.92 Aligned_cols=16 Identities=13% Similarity=0.221 Sum_probs=12.8
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+++||.|.|+.-
T Consensus 32 ~eLs~~~Gd~i~v~~~ 47 (79)
T 1x69_A 32 DEISFDPDDIITNIEM 47 (79)
T ss_dssp SBCCCCTTCEEEEEEE
T ss_pred CCcCcCCCCEEEEeEe
Confidence 4567799999999864
No 117
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=29.82 E-value=34 Score=20.67 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=12.5
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 16 ~eLs~~~Gd~i~v~~~ 31 (60)
T 1i07_A 16 SELSVMKDDVLEILDD 31 (60)
T ss_dssp TBCCBCTTCEEEECGG
T ss_pred CcccCCCCCEEEEEEc
Confidence 3456799999999863
No 118
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=29.68 E-value=59 Score=20.10 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=12.9
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 21 ~eLs~~~Gd~i~v~~~ 36 (71)
T 2jt4_A 21 DELTIKSGDKVYILDD 36 (71)
T ss_dssp TBCCBCTTCEEEEEES
T ss_pred CcccCCCCCEEEEEEC
Confidence 4566799999999974
No 119
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=29.62 E-value=49 Score=26.84 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=26.3
Q ss_pred cceecCCEEEEeecCCCCeeeEEEEEEccCCeEEE
Q 031394 35 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 69 (160)
Q Consensus 35 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~V 69 (160)
+.++.||.|.|..|...=-.++|..+.++.-.+.+
T Consensus 35 LRl~~Gd~i~l~dg~G~~~~a~I~~~~~~~~~~~i 69 (268)
T 1vhk_A 35 MRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLV 69 (268)
T ss_dssp TCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEE
T ss_pred hcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEE
Confidence 34599999999999876677889888775544443
No 120
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=29.60 E-value=1.1e+02 Score=19.30 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=25.8
Q ss_pred cceecCCEEEEee-cCCCCeeeEEEEEEccCCeEEEe
Q 031394 35 MHVKAGDTVKVIA-GCDKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 35 ~~I~kGD~V~Vi~-GkdKGK~G~V~~V~~~~~~V~Ve 70 (160)
..+++||.+...= ...+=-.++|++|..+.+.+.|.
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~ 43 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAIT 43 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEE
Confidence 3458999999985 44444569999999876665443
No 121
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=29.37 E-value=46 Score=26.91 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=25.8
Q ss_pred ceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEe
Q 031394 36 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 36 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 70 (160)
.++.||.|.+..|...--.++|..+.++.-.+.+.
T Consensus 32 Rl~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i~ 66 (257)
T 3kw2_A 32 RMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVC 66 (257)
T ss_dssp CCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEE
T ss_pred cCCCCCEEEEEECCCCEEEEEEEEeeCCEEEEEEE
Confidence 34999999999998544568898888765544443
No 122
>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=29.30 E-value=42 Score=21.38 Aligned_cols=16 Identities=19% Similarity=0.437 Sum_probs=12.9
Q ss_pred ccceecCCEEEEeecC
Q 031394 34 KMHVKAGDTVKVIAGC 49 (160)
Q Consensus 34 k~~I~kGD~V~Vi~Gk 49 (160)
.+.+++||.|.|+.-.
T Consensus 31 eLs~~~Gd~i~v~~~~ 46 (80)
T 2v1r_A 31 EVALKKGDLMAILSKK 46 (80)
T ss_dssp BCCBCTTCEEEEEEEE
T ss_pred EecCCCCCEEEEEECC
Confidence 5677999999998743
No 123
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.15 E-value=26 Score=21.95 Aligned_cols=16 Identities=31% Similarity=0.601 Sum_probs=12.9
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 23 ~eLs~~~Gd~i~v~~~ 38 (70)
T 2ega_A 23 SELSLQAGEVVDVIEK 38 (70)
T ss_dssp SSCCCCTTCBCEEEEE
T ss_pred CcccCCCCCEEEEEEc
Confidence 4567799999999874
No 124
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.97 E-value=56 Score=20.79 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=13.3
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+++||.|.|+.-.
T Consensus 29 ~eLsf~~Gd~i~v~~~~ 45 (76)
T 2csi_A 29 AELTFCTGDIITVFGEI 45 (76)
T ss_dssp TSCCCCTTCEEEEESSC
T ss_pred CcccCCCCCEEEEeEec
Confidence 45677999999999743
No 125
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.79 E-value=35 Score=21.28 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=12.9
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (70)
T 2da9_A 22 DELTIKEGDIVTLINK 37 (70)
T ss_dssp TBCCCCTTEEEEEEEC
T ss_pred CEeeEcCCCEEEEEEC
Confidence 4567799999999864
No 126
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=28.46 E-value=49 Score=26.44 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=26.2
Q ss_pred ceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEe
Q 031394 36 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 36 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 70 (160)
.++.||.|.|..|...--.++|..+.++.-.+.+.
T Consensus 40 Rl~~Gd~v~l~dg~G~~~~a~I~~~~~~~~~~~i~ 74 (234)
T 1z85_A 40 RLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIV 74 (234)
T ss_dssp TCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEE
T ss_pred cCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEEE
Confidence 34999999999887666668898888766554443
No 127
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=28.17 E-value=1.4e+02 Score=20.27 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=28.4
Q ss_pred ccceecCCEEEEeecCCCCeeeEEEEEEccCCeEEE
Q 031394 34 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMV 69 (160)
Q Consensus 34 k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~V 69 (160)
...+..|.+|+++.-...--..+|+.|+...+++.|
T Consensus 17 ~~~F~vGmkLEA~D~~~~~~~a~i~~v~~~~~~v~V 52 (88)
T 2eqm_A 17 GITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLV 52 (88)
T ss_dssp SCCCCSSCEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred cCcCCCCCEEEEEcCCCCeeEEEEEEEeccCCEEEE
Confidence 456799999999986666688999988877776544
No 128
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}
Probab=28.13 E-value=48 Score=20.59 Aligned_cols=15 Identities=20% Similarity=0.536 Sum_probs=12.3
Q ss_pred cccceecCCEEEEee
Q 031394 33 HKMHVKAGDTVKVIA 47 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~ 47 (160)
..+.+.+||.|.|+.
T Consensus 22 ~eLs~~~Gd~i~v~~ 36 (68)
T 1wxt_A 22 RELTVVQGEKLEVLD 36 (68)
T ss_dssp SBCCBCTTCEEEEEE
T ss_pred CcCCCCCCCEEEEEE
Confidence 456779999999986
No 129
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.03 E-value=50 Score=21.12 Aligned_cols=17 Identities=12% Similarity=0.358 Sum_probs=13.5
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+++||.|.|+.-.
T Consensus 28 ~eLs~~~Gd~i~v~~~~ 44 (78)
T 2dl5_A 28 DELTIEEHEVLEVIEDG 44 (78)
T ss_dssp TBCCBCSSEEEEEEECC
T ss_pred CCCCCCCCCEEEEEecc
Confidence 45677999999998754
No 130
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=28.00 E-value=24 Score=27.36 Aligned_cols=43 Identities=30% Similarity=0.502 Sum_probs=30.0
Q ss_pred CCcccccc-ceecCCEEEEee-cC---------CCCeeeEEEEEEccCCeEEEe
Q 031394 28 SLPVLHKM-HVKAGDTVKVIA-GC---------DKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 28 ~~~~~~k~-~I~kGD~V~Vi~-Gk---------dKGK~G~V~~V~~~~~~V~Ve 70 (160)
..|+..++ .+++||.|-|.. |. +-|++|.|..|....-.|+|.
T Consensus 24 ~~plst~m~~yk~GD~VdIk~~~svqKGmPhk~yHGkTGrV~~v~~~AvgViVn 77 (160)
T 2zkr_q 24 VVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVN 77 (160)
T ss_dssp CCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEECCCCSSSEEEEEE
T ss_pred CCcHHHHHHHcCCCCEEEEEecCCcccCCCCcccCCCCeEEEeEcCCEEEEEEE
Confidence 34555565 567999998763 22 679999998877665556665
No 131
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A
Probab=27.93 E-value=45 Score=21.98 Aligned_cols=16 Identities=19% Similarity=0.437 Sum_probs=13.0
Q ss_pred ccceecCCEEEEeecC
Q 031394 34 KMHVKAGDTVKVIAGC 49 (160)
Q Consensus 34 k~~I~kGD~V~Vi~Gk 49 (160)
.+.+++||.|.|+.-.
T Consensus 31 eLsf~~Gd~i~v~~~~ 46 (92)
T 1jqq_A 31 EVALKKGDLMAILSKK 46 (92)
T ss_dssp BCCBCTTCEEEEEEEE
T ss_pred CcCCCCCCEEEEEECC
Confidence 5677999999998753
No 132
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.78 E-value=63 Score=20.88 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=12.8
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 32 ~eLsf~~Gd~i~v~~~ 47 (81)
T 1x6g_A 32 GELAFRKGDVVTILEA 47 (81)
T ss_dssp TCCCBCTTCEEEEEEC
T ss_pred CCCCCCCCCEEEEEec
Confidence 4466799999999874
No 133
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=27.70 E-value=42 Score=23.20 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=16.9
Q ss_pred cCCHHHHHhcCCCCCccccccceecCCEEEEee
Q 031394 15 RLKRWERKECKPNSLPVLHKMHVKAGDTVKVIA 47 (160)
Q Consensus 15 ~l~~~lR~k~~~~~~~~~~k~~I~kGD~V~Vi~ 47 (160)
-+++++|.+++ |.+||.|.++.
T Consensus 63 tIPkeiR~~lg-----------i~~Gd~l~~~~ 84 (92)
T 2glw_A 63 IIPKALRDVIG-----------IKPGEVIEVLL 84 (92)
T ss_dssp ECCHHHHHHHT-----------CCTTCEEEEEE
T ss_pred ECcHHHHHHcC-----------CCCCCEEEEEE
Confidence 36888888874 47899998863
No 134
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Probab=27.66 E-value=43 Score=20.84 Aligned_cols=16 Identities=25% Similarity=0.572 Sum_probs=12.7
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 21 ~eLs~~~Gd~i~v~~~ 36 (71)
T 1u5s_A 21 EELNFEKGETMEVIEK 36 (71)
T ss_dssp SBCCCCSSCCEEEEEC
T ss_pred CcccCCCCCEEEEEEC
Confidence 4466799999999874
No 135
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=27.44 E-value=49 Score=19.75 Aligned_cols=17 Identities=12% Similarity=0.323 Sum_probs=13.5
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.|.|+.-.
T Consensus 16 ~eLs~~~Gd~i~v~~~~ 32 (58)
T 2bz8_A 16 DELTISVGEIITNIRKE 32 (58)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CEeeECCCCEEEEEEeC
Confidence 45677999999999754
No 136
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.38 E-value=67 Score=21.50 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=12.2
Q ss_pred cccceecCCEEEEee
Q 031394 33 HKMHVKAGDTVKVIA 47 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~ 47 (160)
..+.+++||.|.|+.
T Consensus 40 ~eLsf~~Gd~i~vl~ 54 (97)
T 2csq_A 40 EELPFKEGQIIKVYG 54 (97)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CccCCCCCCEEEEEE
Confidence 456779999999993
No 137
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A
Probab=27.34 E-value=47 Score=21.07 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=13.2
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.|.|+.-.
T Consensus 24 ~eLs~~~Gd~i~v~~~~ 40 (74)
T 1gbq_A 24 DELSFKRGDILKVLNEE 40 (74)
T ss_dssp TBCCBCTTCEEECCBCS
T ss_pred CeeeEcCCCEEEEeEec
Confidence 45677999999998643
No 138
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=27.06 E-value=24 Score=22.56 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=12.8
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 25 ~eLs~~~Gd~i~v~~~ 40 (76)
T 1ujy_A 25 DELSVCKGDIIYVTRV 40 (76)
T ss_dssp TSCCBCSSCCEEESSC
T ss_pred CcccCCCCCEEEEEEe
Confidence 4567799999999863
No 139
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=26.93 E-value=66 Score=22.44 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=19.9
Q ss_pred ceecCCEEEEe-ecCCCCeeeEEEEEEc
Q 031394 36 HVKAGDTVKVI-AGCDKGKIGEITKVFR 62 (160)
Q Consensus 36 ~I~kGD~V~Vi-~GkdKGK~G~V~~V~~ 62 (160)
.|..||+|.|. .|. .+..|+|..|=+
T Consensus 11 ~~~vG~rv~V~~~g~-~~~~GtVryvG~ 37 (95)
T 1lpl_A 11 NIMVGNRCEVTVGAQ-MARRGEVAYVGA 37 (95)
T ss_dssp TCCTTCEEEECCTTS-CCEEEEEEEEEC
T ss_pred cCCCCCEEEEccCCC-CceEEEEEEecc
Confidence 35889999998 343 478899988865
No 140
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A
Probab=26.58 E-value=39 Score=21.45 Aligned_cols=15 Identities=7% Similarity=0.379 Sum_probs=12.3
Q ss_pred cccceecCCEEEEee
Q 031394 33 HKMHVKAGDTVKVIA 47 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~ 47 (160)
..+.+++||.+.|+.
T Consensus 19 ~ELsf~~Gd~i~vl~ 33 (67)
T 2b86_A 19 QELDIKKNERLWLLD 33 (67)
T ss_dssp TSCCBCTTCEEEEEE
T ss_pred CccccCCCCEEEEEe
Confidence 446679999999996
No 141
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=26.25 E-value=38 Score=21.04 Aligned_cols=16 Identities=6% Similarity=0.175 Sum_probs=12.8
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.+.|+.-
T Consensus 22 ~eLsf~~Gd~i~v~~~ 37 (68)
T 1tg0_A 22 DDLNFEKDQEIIVTSV 37 (68)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CCCCCCCCCEEEEEEe
Confidence 4567799999999863
No 142
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=26.24 E-value=51 Score=22.11 Aligned_cols=16 Identities=25% Similarity=0.632 Sum_probs=13.1
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+++||.|.|+.-
T Consensus 44 ~ELsf~~GD~I~Vl~~ 59 (89)
T 2rf0_A 44 EELTLRRGDRVQVLSQ 59 (89)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CccccCCCCEEEEEec
Confidence 4567899999999874
No 143
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A
Probab=25.92 E-value=67 Score=19.93 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=12.5
Q ss_pred cccceecCCEEEEee
Q 031394 33 HKMHVKAGDTVKVIA 47 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~ 47 (160)
..+.+.+||.|.|+.
T Consensus 23 ~eLs~~~Gd~i~v~~ 37 (68)
T 2k2m_A 23 SELSVKQRDVLEVLD 37 (68)
T ss_dssp SBCCBCTTCEEEEEE
T ss_pred CcccCCCCCEEEEEE
Confidence 456779999999987
No 144
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=25.89 E-value=23 Score=22.43 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=12.3
Q ss_pred cccceecCCEEEEee
Q 031394 33 HKMHVKAGDTVKVIA 47 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~ 47 (160)
..+.+.+||.+.|+.
T Consensus 25 ~eLsf~~Gd~i~v~~ 39 (72)
T 1ugv_A 25 SELSFTAGTVFDNVH 39 (72)
T ss_dssp SBCCBCTTCEEBSCC
T ss_pred CEeCCcCCCEEEEEE
Confidence 456789999999885
No 145
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=25.78 E-value=48 Score=23.58 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=20.6
Q ss_pred ceecCCEEEEeecCCC-CeeeEEEEEEcc
Q 031394 36 HVKAGDTVKVIAGCDK-GKIGEITKVFRH 63 (160)
Q Consensus 36 ~I~kGD~V~Vi~GkdK-GK~G~V~~V~~~ 63 (160)
.|.+||.|.|---++- -..|.|+.++..
T Consensus 58 wI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~ 86 (102)
T 1jt8_A 58 WVREGDVVIVKPWEVQGDQKCDIIWRYTK 86 (102)
T ss_dssp CCCSCEEEEECCBCCTTSEEEEEEEESSC
T ss_pred EecCCCEEEEEeccCCCCceEEEEEEeCH
Confidence 4589999999655554 566999887654
No 146
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=25.73 E-value=1.7e+02 Score=20.30 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=30.0
Q ss_pred cCCEEEEeecCCCCe-eeEEEEEEccCCeEEEece
Q 031394 39 AGDTVKVIAGCDKGK-IGEITKVFRHNSTVMVKDI 72 (160)
Q Consensus 39 kGD~V~Vi~GkdKGK-~G~V~~V~~~~~~V~VeGv 72 (160)
-|-.|-+.+|.+-|. +|+|..|++..+.+++..+
T Consensus 8 iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~ 42 (84)
T 2vc8_A 8 LGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRP 42 (84)
T ss_dssp TTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEE
T ss_pred cCCEEEEEECCCceEEEEEEEEeccCCCeEEEehh
Confidence 488899999999975 6999999999999988865
No 147
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=25.66 E-value=51 Score=26.20 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=20.4
Q ss_pred cceecCCEEEEeecC----------CCCeeeEEEEEE
Q 031394 35 MHVKAGDTVKVIAGC----------DKGKIGEITKVF 61 (160)
Q Consensus 35 ~~I~kGD~V~Vi~Gk----------dKGK~G~V~~V~ 61 (160)
..+..||+|.|..=. -+|++|+|..+.
T Consensus 117 ~~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~I~~~~ 153 (206)
T 4fm4_B 117 GGFKLGQRVHVKNEFVPGHTRFPAYIRGKAGVVVGIS 153 (206)
T ss_dssp TCCCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEC
T ss_pred CCCcCCCEEEeCCCCCCCcccccHhhcCCeeEEEEEe
Confidence 357899999997532 368999987764
No 148
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=25.59 E-value=1.2e+02 Score=18.61 Aligned_cols=34 Identities=21% Similarity=0.044 Sum_probs=23.9
Q ss_pred eecCCEEEEee-cCCCCeeeEEEEEEccCCeEEEe
Q 031394 37 VKAGDTVKVIA-GCDKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 37 I~kGD~V~Vi~-GkdKGK~G~V~~V~~~~~~V~Ve 70 (160)
+++||.+...- +..+=-.++|+++....+.+.|.
T Consensus 4 ~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~ 38 (59)
T 1mhn_A 4 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVV 38 (59)
T ss_dssp CCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEE
Confidence 57899998884 33344669999998765655543
No 149
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=25.31 E-value=76 Score=23.98 Aligned_cols=31 Identities=6% Similarity=0.117 Sum_probs=22.5
Q ss_pred cceecCCEEEEeecCCCCeeeEEEEEEccCC
Q 031394 35 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNS 65 (160)
Q Consensus 35 ~~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~ 65 (160)
..|.+||.|.|---++--..|.|+.++....
T Consensus 68 IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~de 98 (143)
T 1d7q_A 68 VWINTSDIILVGLRDYQDNKADVILKYNADE 98 (143)
T ss_dssp CCCCTTCEEEEECSSSSSSCCEEEEEECTTT
T ss_pred EEecCCCEEEEeeccCCCCeEEEEEEeCHHH
Confidence 4568999999976565555588888876554
No 150
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=25.28 E-value=97 Score=20.52 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=31.4
Q ss_pred CCCCCCCcceeeeccC--CHHHHHhcCCCCCccccccceecCCEEEEeec
Q 031394 1 MQVKPTDKPCLIVVRL--KRWERKECKPNSLPVLHKMHVKAGDTVKVIAG 48 (160)
Q Consensus 1 ~~~~~~~~~~~~s~~l--~~~lR~k~~~~~~~~~~k~~I~kGD~V~Vi~G 48 (160)
||++++++-...+-.- +.++|..+ ..+=|.+|-.|.|+.-
T Consensus 1 m~l~~G~~~~I~~i~~~~~~~~~rrL--------~~mGl~pG~~V~Vi~~ 42 (83)
T 2lx9_A 1 MQYTPDTAWKITGFSREISPAYRQKL--------LSLGMLPGSSFNVVRV 42 (83)
T ss_dssp CCSCSSCEEEEEECCSSSCHHHHHHH--------HHSSCCSSSEEEEEEE
T ss_pred CccCCCCEEEEEEEECCCCHHHHHHH--------HHCCCCCCCEEEEEEe
Confidence 8999999988887776 58888886 3344589999999864
No 151
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=25.13 E-value=90 Score=21.37 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=19.3
Q ss_pred ceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEe
Q 031394 36 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 36 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 70 (160)
.++.||.|.| +|+.|++++.++.+.
T Consensus 75 ~~~vGd~V~v----------~V~~vd~~~~ki~LS 99 (109)
T 2khj_A 75 VLSVGDEVEA----------KFTGVDRKNRAISLS 99 (109)
T ss_dssp SCCTTCEEEE----------EEEEEETTTTEEEEE
T ss_pred ccCCCCEEEE----------EEEEEECCCCEEEEE
Confidence 4689999986 788888887776553
No 152
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=24.91 E-value=89 Score=21.69 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=20.3
Q ss_pred ceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEe
Q 031394 36 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 36 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 70 (160)
.++.||.|.| +|+.|+.+++++.+.
T Consensus 75 ~~~vGd~V~v----------kV~~vd~~~~rI~ls 99 (115)
T 2khi_A 75 VVNVGDVVEV----------MVLDIDEERRRISLG 99 (115)
T ss_dssp TCCTTCEEEE----------EEEEEETTTTEEEEC
T ss_pred EECCCCEEEE----------EEEEEECCCCEEEEE
Confidence 4689999988 789999888877654
No 153
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.88 E-value=59 Score=21.13 Aligned_cols=17 Identities=0% Similarity=0.241 Sum_probs=13.1
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.|.|+.-.
T Consensus 34 ~eLs~~~Gd~i~v~~~~ 50 (85)
T 2yuq_A 34 QELALRRNEEYCLLDSS 50 (85)
T ss_dssp SBCCCCBTEEEEEEECC
T ss_pred CcCCCCCCCEEEEEEec
Confidence 45677999999998643
No 154
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=24.57 E-value=57 Score=19.43 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=12.9
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 15 ~eLs~~~Gd~i~v~~~ 30 (58)
T 1jo8_A 15 NELTFVENDKIINIEF 30 (58)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCcccCCCCEEEEEEe
Confidence 4566799999999874
No 155
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=24.46 E-value=58 Score=20.97 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=14.6
Q ss_pred cccceecCCEEEEeecCCC
Q 031394 33 HKMHVKAGDTVKVIAGCDK 51 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~GkdK 51 (160)
..+.+.+||.|.|+.-.+-
T Consensus 25 ~eLsf~~Gd~i~v~~~~~~ 43 (80)
T 2i0n_A 25 SLLPFKRNDIITITFKDQE 43 (80)
T ss_dssp SSCCBCSSEEEEEEEESSS
T ss_pred CCcCCCCCCEEEEEEecCC
Confidence 4567799999999976543
No 156
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.45 E-value=80 Score=19.51 Aligned_cols=16 Identities=6% Similarity=0.353 Sum_probs=12.7
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~vl~~ 37 (70)
T 2ct4_A 22 GTISMAEGEDLSLMEE 37 (70)
T ss_dssp TCCCBCTTCEEEEEEC
T ss_pred CcCCCCCCCEEEEEec
Confidence 4567799999999864
No 157
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.34 E-value=43 Score=22.08 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=13.0
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.|.+||.|.|+.-
T Consensus 32 ~eLsf~~Gd~i~v~~~ 47 (90)
T 2yup_A 32 VELSFRKGEHICLIRK 47 (90)
T ss_dssp SBCCCCTTCEEEESSC
T ss_pred CcCCCCCCCEEEEEEE
Confidence 4577899999999863
No 158
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=24.26 E-value=62 Score=19.86 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=11.7
Q ss_pred cceecCCEEEEeec
Q 031394 35 MHVKAGDTVKVIAG 48 (160)
Q Consensus 35 ~~I~kGD~V~Vi~G 48 (160)
+.+.+||.+.|+..
T Consensus 25 Lsf~~Gd~i~v~~~ 38 (67)
T 3rnj_A 25 LSFKEGDLITLLVP 38 (67)
T ss_dssp CCBCTTCEEEECSS
T ss_pred ccCCCCCEEEEeec
Confidence 56799999999864
No 159
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=23.95 E-value=81 Score=20.61 Aligned_cols=16 Identities=25% Similarity=0.572 Sum_probs=13.0
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.|.+||.|.|+.-
T Consensus 32 ~eLs~~~Gd~i~v~~~ 47 (91)
T 1wx6_A 32 EELNFEKGETMEVIEK 47 (91)
T ss_dssp SBCCCCTTCEEEEEEC
T ss_pred CcccCCCCCEEEEEEC
Confidence 4567799999999875
No 160
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=23.76 E-value=53 Score=19.87 Aligned_cols=16 Identities=19% Similarity=0.493 Sum_probs=13.0
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 20 ~eLs~~~Gd~i~v~~~ 35 (62)
T 1k4u_S 20 EDLEFQEGDIILVLSK 35 (62)
T ss_dssp SBCCBCSSCEEEEEEE
T ss_pred CCccCCCCCEEEEEEe
Confidence 4567799999999974
No 161
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}
Probab=23.74 E-value=38 Score=20.91 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=12.8
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (67)
T 2kxc_A 22 TLLSFAQGDVITLLIP 37 (67)
T ss_dssp SBCCBCTTCEEEESSS
T ss_pred CCCcCCCCCEEEEeEC
Confidence 4567799999999873
No 162
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A
Probab=23.71 E-value=84 Score=20.21 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=12.8
Q ss_pred ccccceecCCEEEEee
Q 031394 32 LHKMHVKAGDTVKVIA 47 (160)
Q Consensus 32 ~~k~~I~kGD~V~Vi~ 47 (160)
...+.+.+||.+.|+.
T Consensus 19 ~~eLs~~~Gd~I~V~~ 34 (83)
T 3i5r_A 19 EEDIDLHLGDILTVNK 34 (83)
T ss_dssp TTBCCBCTTCEEEEEH
T ss_pred CCccccCCCCEEEEee
Confidence 3456789999999994
No 163
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=23.65 E-value=63 Score=25.79 Aligned_cols=53 Identities=13% Similarity=0.314 Sum_probs=36.2
Q ss_pred CeeeeecCCCC-eeeEEEEEccCCcEEEEEeccCCcccc-----hhhhhHhhhc--cccceeee
Q 031394 101 NVMLYSKEMEV-ASRVGHKVLDDGTRVRYLIKTGEIIDS-----AENWKKLKEA--NRQEKTEV 156 (160)
Q Consensus 101 nV~Lv~p~~~~-ptRv~~~~~edG~kvRv~kksg~~i~~-----p~~~~~~~~~--~~~~~~~~ 156 (160)
|+.+.||.++. +..+-+.. +.| ..||..||.+|.. =.-|.-|-.+ +++.+..+
T Consensus 19 n~~~~CPECGs~~t~IV~D~-erG--E~VCsdCGLVLEEriID~GPEWRAFsnDD~~~dDpSRV 79 (197)
T 3k1f_M 19 NIVLTCPECKVYPPKIVERF-SEG--DVVCALCGLVLSDKLVDTRSEWRTFSNXXXXXXXXXXX 79 (197)
T ss_dssp CCCCCCTTTCCSSCCEEEEG-GGT--EEEETTTCBBCCCCCBCHHHHHHHHHCCCTTTTCSCCC
T ss_pred ccCeECcCCCCcCCeEEEeC-CCC--EEEEcCCCCCcCCceeECCCCCcCcCCccccccccccc
Confidence 56778999987 46675543 556 6899999998753 2378888875 24444433
No 164
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=23.63 E-value=55 Score=20.77 Aligned_cols=19 Identities=32% Similarity=0.712 Sum_probs=14.2
Q ss_pred ccccceecCCEEEEeecCC
Q 031394 32 LHKMHVKAGDTVKVIAGCD 50 (160)
Q Consensus 32 ~~k~~I~kGD~V~Vi~Gkd 50 (160)
...+.+++||.|.|+.-.+
T Consensus 20 ~~ELs~~~Gd~i~v~~~~~ 38 (65)
T 2lj0_A 20 DDELELRDGDIVDVMEKCD 38 (65)
T ss_dssp TTBCCBCTTCEEEEEEECT
T ss_pred cCCcCCCCCCEEEEeEeCC
Confidence 3457789999999986443
No 165
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Probab=23.50 E-value=67 Score=19.77 Aligned_cols=16 Identities=13% Similarity=0.569 Sum_probs=12.7
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (70)
T 2cuc_A 22 EELDLQKGEGIRVLGK 37 (70)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CcCCCCCCCEEEEEEe
Confidence 4567799999999853
No 166
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=23.50 E-value=86 Score=22.31 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=21.1
Q ss_pred ccccccceecCCEEEEeecCCCCeeeEEEEEEc
Q 031394 30 PVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFR 62 (160)
Q Consensus 30 ~~~~k~~I~kGD~V~Vi~GkdKGK~G~V~~V~~ 62 (160)
+....-.|..||+|.|.. . -+..|+|..|=+
T Consensus 11 ~~~~~~~l~VG~RV~V~~-~-~~~~GtVryvG~ 41 (104)
T 1ixd_A 11 PPGNSHGLEVGSLAEVKE-N-PPFYGVIRWIGQ 41 (104)
T ss_dssp TTTSSSCCCTTSEEEECS-S-SCCCEEEEEEEC
T ss_pred CCCCCcccccCCEEEECc-C-CCcEEEEEEecc
Confidence 333445679999999962 2 167788887754
No 167
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.47 E-value=65 Score=19.92 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=12.3
Q ss_pred cccceecCCEEEEee
Q 031394 33 HKMHVKAGDTVKVIA 47 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~ 47 (160)
..+.+.+||.|.|+.
T Consensus 22 ~eLs~~~Gd~i~v~~ 36 (68)
T 1wxb_A 22 NELSVLKDEVLEVLE 36 (68)
T ss_dssp SBCCBCTTCEEEEEE
T ss_pred CccCCCCCCEEEEEE
Confidence 456779999999986
No 168
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=23.42 E-value=83 Score=24.78 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=25.3
Q ss_pred ceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEe
Q 031394 36 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 36 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 70 (160)
.++.||.|.|..|.. --.++|..+.+ .-.+.+.
T Consensus 28 Rl~~Gd~v~l~dg~g-~~~a~i~~~~~-~~~~~i~ 60 (228)
T 1v6z_A 28 RARVGDRFTVFDGER-EALAEVVDLGP-PLRYRVL 60 (228)
T ss_dssp CCCTTCEEEEECSSC-EEEEEEEECCS-SCEEEEE
T ss_pred cCCCCCEEEEEeCCc-EEEEEEEECCC-eEEEEEE
Confidence 449999999999987 66688988877 6555444
No 169
>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}
Probab=23.27 E-value=64 Score=20.11 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=12.8
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.+.|+.-
T Consensus 26 ~eLs~~~Gd~i~v~~~ 41 (74)
T 2m0y_A 26 DELSLQIGDTVHILET 41 (74)
T ss_dssp SBCCEETTEEEEEEEB
T ss_pred CcccCCCCCEEEEEEc
Confidence 4567899999999864
No 170
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=22.81 E-value=67 Score=26.51 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=21.5
Q ss_pred ecCCEEEEeecCCCCeeeEEEEEEccCCeE
Q 031394 38 KAGDTVKVIAGCDKGKIGEITKVFRHNSTV 67 (160)
Q Consensus 38 ~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V 67 (160)
..||.|.+-... +..|.|.+|.+.++.+
T Consensus 52 ~vGD~V~~~~~~--~~~~~i~~i~~R~~~l 79 (307)
T 1t9h_A 52 LVGDYVVYQAEN--DKEGYLMEIKERTNEL 79 (307)
T ss_dssp CBTCEEEEECCT--TSCEEEEEECCCSCEE
T ss_pred CCCeEEEEEEcC--CCceEEEEEcchhhhh
Confidence 599999986432 3479999999888755
No 171
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=22.79 E-value=39 Score=20.91 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=12.2
Q ss_pred cccceecCCEEEEee
Q 031394 33 HKMHVKAGDTVKVIA 47 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~ 47 (160)
..+.+.+||.|.|+.
T Consensus 22 ~eLs~~~Gd~i~v~~ 36 (68)
T 1wi7_A 22 DELELKVGDIIEVVG 36 (68)
T ss_dssp TBCCBCTTCEECCCE
T ss_pred CCccCcCCCEEEEEE
Confidence 456779999999985
No 172
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=22.72 E-value=60 Score=19.59 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=12.7
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 18 ~eLs~~~Gd~i~v~~~ 33 (62)
T 2fpe_A 18 DELELEVDDPLLVELQ 33 (62)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CcCcCCCCCEEEEEEe
Confidence 4567799999999853
No 173
>2heq_A YORP protein; SH3-like, structure, BSU2030, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: b.34.20.1
Probab=22.56 E-value=87 Score=21.45 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=25.1
Q ss_pred ccccccceecCCEEEEeecC------CCCeeeEEEEEE
Q 031394 30 PVLHKMHVKAGDTVKVIAGC------DKGKIGEITKVF 61 (160)
Q Consensus 30 ~~~~k~~I~kGD~V~Vi~Gk------dKGK~G~V~~V~ 61 (160)
|++.+|..-.||.|+|-+-. +-|..|+|+.-.
T Consensus 5 pmPKyWsYp~gl~VeIN~NAkygcPhhVGrkGkIie~~ 42 (84)
T 2heq_A 5 PLPKYWSYPVGLAVEINNNARYGCPHHVGRKGKIIEHL 42 (84)
T ss_dssp CCCSSCCSCTTCEEEECTTCTTTSTTCCSSEEEEEEEC
T ss_pred CCccccccCCCCEEEEcCCcccCCccccccccchhhhh
Confidence 55678999999999998653 678899886543
No 174
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=22.55 E-value=64 Score=19.03 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=12.7
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 16 ~eLs~~~Gd~i~v~~~ 31 (57)
T 1cka_A 16 EDLPFKKGDILRIRDK 31 (57)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCCCCCCCCEEEEEEe
Confidence 3466799999999874
No 175
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.28 E-value=79 Score=22.72 Aligned_cols=30 Identities=23% Similarity=0.197 Sum_probs=21.2
Q ss_pred cceecCCEEEEeecCCC-CeeeEEEEEEccC
Q 031394 35 MHVKAGDTVKVIAGCDK-GKIGEITKVFRHN 64 (160)
Q Consensus 35 ~~I~kGD~V~Vi~GkdK-GK~G~V~~V~~~~ 64 (160)
..|.+||.|.|---++- -..|.|+.+++..
T Consensus 52 IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~ 82 (111)
T 2dgy_A 52 IWIKRGDFLIVDPIEEGEKVKAEISFVLCKD 82 (111)
T ss_dssp CCCCSSCEEEEEECSSCSSCCEEEEEECCHH
T ss_pred EEEcCCCEEEEEecccCCcceEEEEEEeCHH
Confidence 35689999999765554 3558887777643
No 176
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.26 E-value=44 Score=21.49 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=12.4
Q ss_pred cccceecCCEEEEee
Q 031394 33 HKMHVKAGDTVKVIA 47 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~ 47 (160)
..+.+.+||.|.|+.
T Consensus 32 ~eLs~~~Gd~i~v~~ 46 (79)
T 1x6b_A 32 DEVTLQQADVVLVLQ 46 (79)
T ss_dssp SBCCCCTTEEEEEEE
T ss_pred CCcCCCCCCEEEEEE
Confidence 456789999999986
No 177
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=22.19 E-value=1.1e+02 Score=21.87 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=20.2
Q ss_pred ceecCCEEEEeecCCCCeeeEEEEEEccCCeEEEe
Q 031394 36 HVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVK 70 (160)
Q Consensus 36 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~~~~~V~Ve 70 (160)
.++.||.|.| +|+.|+.+.+++.+.
T Consensus 51 ~~~vGd~V~v----------kV~~vd~~~~kI~LS 75 (130)
T 2k4k_A 51 HLSVGDEVQV----------KVLAVDEEKGKISLS 75 (130)
T ss_dssp TCCTTCEEEE----------EEEEEETTTTEEEEE
T ss_pred cCCCCCEEEE----------EEEEEeCCCCEEEEE
Confidence 4689999987 788999888877664
No 178
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}
Probab=21.82 E-value=91 Score=19.49 Aligned_cols=15 Identities=7% Similarity=0.379 Sum_probs=12.5
Q ss_pred cccceecCCEEEEee
Q 031394 33 HKMHVKAGDTVKVIA 47 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~ 47 (160)
..+.+.+||.|.|+.
T Consensus 22 ~eLs~~~Gd~i~v~~ 36 (72)
T 2jw4_A 22 QELDIKKNERLWLLD 36 (72)
T ss_dssp TSCCCCTTCEEEEEE
T ss_pred CcccCCCCCEEEEEE
Confidence 456679999999997
No 179
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=21.60 E-value=73 Score=18.80 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=13.1
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.|.|+.-.
T Consensus 18 ~eLs~~~Gd~i~v~~~~ 34 (58)
T 2drm_A 18 DELTFKEGDTIIVHQKD 34 (58)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCcCCCCCCEEEEEEec
Confidence 44667999999998743
No 180
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=21.55 E-value=70 Score=19.34 Aligned_cols=16 Identities=19% Similarity=0.513 Sum_probs=12.9
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 20 ~eLs~~~Gd~i~v~~~ 35 (62)
T 1uj0_A 20 NELTFKHGELITVLDD 35 (62)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCcCCCCCCEEEEEEe
Confidence 3567799999999974
No 181
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=21.38 E-value=65 Score=20.07 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=12.7
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 21 ~eLs~~~Gd~i~v~~~ 36 (71)
T 2fpf_A 21 DELELEVDDPLLVELQ 36 (71)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CcccCcCCcEEEEeEe
Confidence 4567799999999854
No 182
>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}
Probab=21.38 E-value=65 Score=19.83 Aligned_cols=18 Identities=17% Similarity=0.604 Sum_probs=14.0
Q ss_pred cccceecCCEEEEeecCC
Q 031394 33 HKMHVKAGDTVKVIAGCD 50 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gkd 50 (160)
..+.+.+||.+.|+.-.+
T Consensus 28 ~eLs~~~Gd~i~v~~~~~ 45 (72)
T 4glm_A 28 NELDFEVGDKIRILATLE 45 (72)
T ss_dssp TBCCBCTTCEEEEEEECS
T ss_pred CcCCCCCCCEEEEEEccC
Confidence 456789999999986543
No 183
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}
Probab=21.34 E-value=55 Score=23.10 Aligned_cols=15 Identities=20% Similarity=0.536 Sum_probs=12.4
Q ss_pred cccceecCCEEEEee
Q 031394 33 HKMHVKAGDTVKVIA 47 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~ 47 (160)
..+.+.+||.|.|+.
T Consensus 74 ~eLsf~~Gd~i~vl~ 88 (119)
T 2rqr_A 74 PQLSLQIGDVVRIQE 88 (119)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CcccCcCCCEEEEEE
Confidence 446789999999986
No 184
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=21.12 E-value=82 Score=21.58 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=16.5
Q ss_pred eecCCEEEEeecCCCCeeeEEEEEEc
Q 031394 37 VKAGDTVKVIAGCDKGKIGEITKVFR 62 (160)
Q Consensus 37 I~kGD~V~Vi~GkdKGK~G~V~~V~~ 62 (160)
|..||+|.| .| ...|.|..|=+
T Consensus 3 ~~vG~rv~v-~g---~~~GtVryvG~ 24 (86)
T 2e3i_A 3 FRVGERVWV-NG---NKPGFIQFLGE 24 (86)
T ss_dssp CCTTCEEEE-TT---TEEEEEEEEEE
T ss_pred ccCCCEEEE-CC---CcEEEEEEeee
Confidence 578999998 34 36788877754
No 185
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=20.99 E-value=68 Score=19.59 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=13.4
Q ss_pred ccccceecCCEEEEeec
Q 031394 32 LHKMHVKAGDTVKVIAG 48 (160)
Q Consensus 32 ~~k~~I~kGD~V~Vi~G 48 (160)
...+.+.+||.+.|+.-
T Consensus 20 ~~eLs~~~Gd~i~v~~~ 36 (65)
T 2j05_A 20 TDEISFLKGDMFIVHNE 36 (65)
T ss_dssp SSBCCBCTTCEEEEEEE
T ss_pred CCcCcCCCCCEEEEeEe
Confidence 34567799999999864
No 186
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=20.93 E-value=80 Score=21.87 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=16.3
Q ss_pred eecCCEEEEeecCCCCeeeEEEEEEc
Q 031394 37 VKAGDTVKVIAGCDKGKIGEITKVFR 62 (160)
Q Consensus 37 I~kGD~V~Vi~GkdKGK~G~V~~V~~ 62 (160)
|..||+|.| .| ...|.|..|=+
T Consensus 2 l~vG~rV~V-~g---~~~GtVryvG~ 23 (90)
T 2e3h_A 2 LKIGDRVLV-GG---TKAGVVRFLGE 23 (90)
T ss_dssp CCTTCEEEE-TT---TEEEEEEEEEE
T ss_pred CcCCCEEEE-CC---CCEEEEEEecc
Confidence 478999998 44 36788877754
No 187
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=20.76 E-value=74 Score=19.08 Aligned_cols=16 Identities=0% Similarity=0.164 Sum_probs=13.0
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+++||.+.|+.-
T Consensus 18 ~eLs~~~Gd~i~v~~~ 33 (61)
T 1y0m_A 18 DELTFTKSAIIQNVEK 33 (61)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCcCCcCCCEEEEEEe
Confidence 4567799999999875
No 188
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=20.73 E-value=74 Score=19.12 Aligned_cols=16 Identities=19% Similarity=0.517 Sum_probs=12.9
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.|.|+.-
T Consensus 16 ~eLs~~~Gd~i~v~~~ 31 (65)
T 2oaw_A 16 REVTMKKGDILTLLNS 31 (65)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCCCCCCCCEEEEEEc
Confidence 4566799999999974
No 189
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=20.72 E-value=68 Score=22.29 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=18.3
Q ss_pred ceecCCEEEEeecCCCCeeeEEEEEEc
Q 031394 36 HVKAGDTVKVIAGCDKGKIGEITKVFR 62 (160)
Q Consensus 36 ~I~kGD~V~Vi~GkdKGK~G~V~~V~~ 62 (160)
.|..||+|.|.. .|..|+|..|=+
T Consensus 12 ~~~vG~rv~v~~---~~~~GtVryvG~ 35 (93)
T 1txq_A 12 PLRVGSRVEVIG---KGHRGTVAYVGA 35 (93)
T ss_dssp CCCTTCEEEETT---TCCEEEEEEEEC
T ss_pred cCCCCCEEEECC---CCeEEEEEEeee
Confidence 358899999863 267888888865
No 190
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Probab=20.56 E-value=72 Score=19.59 Aligned_cols=17 Identities=12% Similarity=0.384 Sum_probs=13.4
Q ss_pred cccceecCCEEEEeecC
Q 031394 33 HKMHVKAGDTVKVIAGC 49 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~Gk 49 (160)
..+.+.+||.|.|+.-.
T Consensus 17 ~eLs~~~Gd~i~v~~~~ 33 (67)
T 1gl5_A 17 HDLRLERGQEYIILEKN 33 (67)
T ss_dssp SBCCBCTTCEEEEEECS
T ss_pred CeecCCcCCEEEEEEcc
Confidence 45667999999999753
No 191
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=20.53 E-value=70 Score=18.99 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=12.7
Q ss_pred cccceecCCEEEEeec
Q 031394 33 HKMHVKAGDTVKVIAG 48 (160)
Q Consensus 33 ~k~~I~kGD~V~Vi~G 48 (160)
..+.+.+||.+.|+.-
T Consensus 17 ~eLs~~~Gd~i~v~~~ 32 (58)
T 1zx6_A 17 GDLGLKPGDKVQLLEK 32 (58)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CCccCCCCCEEEEEEe
Confidence 4566799999999864
No 192
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=20.46 E-value=96 Score=22.37 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=19.7
Q ss_pred ceecCCEEEEe-ecCCCCeeeEEEEEEc
Q 031394 36 HVKAGDTVKVI-AGCDKGKIGEITKVFR 62 (160)
Q Consensus 36 ~I~kGD~V~Vi-~GkdKGK~G~V~~V~~ 62 (160)
.|..||+|.|. .|. ....|+|..|=+
T Consensus 32 ~~~VG~RV~V~~~g~-~~~~GtVryvG~ 58 (113)
T 1whg_A 32 AISVGSRCEVRAPDH-SLRRGTVMYVGL 58 (113)
T ss_dssp TSCSSCEEEECCSSS-SCEEEEEEEEEE
T ss_pred cCCCCCEEEEecCCC-cceEEEEEEecc
Confidence 46899999997 453 368888888764
No 193
>3gqh_A Preneck appendage protein; beta barrel, viral protein; 1.80A {Bacillus phage PHI29} PDB: 3gqk_A*
Probab=20.31 E-value=29 Score=27.04 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=25.6
Q ss_pred eecCCCCeeeEEEEEccCCcEEEEEeccCCccc
Q 031394 105 YSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 137 (160)
Q Consensus 105 v~p~~~~ptRv~~~~~edG~kvRv~kksg~~i~ 137 (160)
+...+|.|..++|-++-+|.|+|.+.....+|.
T Consensus 6 FEs~dG~~I~~Gy~Vtl~g~KIR~A~~~D~ilG 38 (163)
T 3gqh_A 6 FESLGGQVIETGYLVTLEKGKIRKAEKGEKIIG 38 (163)
T ss_dssp EEBTTSSCCCTTCEEEEETTEEEECCTTCCCCE
T ss_pred eeccCCCcccCCeEEEecCCEEEecCCCCcEEE
Confidence 344678888999888888999999987666553
Done!