BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031396
MARFLLSKTSTAIATAGASSRHHHLQLSIPSSRLVPRRTQSNQPDASSDVYETSGSSSTD
PLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLVEKLANPLTPEQSL
STSTVRGWPSSDYYIKGKPLHKVEEGSTSSNESEAEDEEG

High Scoring Gene Products

Symbol, full name Information P value
AT1G16840 protein from Arabidopsis thaliana 8.0e-37
AT1G78890 protein from Arabidopsis thaliana 3.5e-36
AT2G19180 protein from Arabidopsis thaliana 1.5e-19

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031396
        (160 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2035510 - symbol:AT1G16840 "AT1G16840" species...   396  8.0e-37   1
TAIR|locus:2037513 - symbol:AT1G78890 "AT1G78890" species...   390  3.5e-36   1
TAIR|locus:2059073 - symbol:AT2G19180 "AT2G19180" species...   233  1.5e-19   1


>TAIR|locus:2035510 [details] [associations]
            symbol:AT1G16840 "AT1G16840" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0006944 "cellular membrane fusion" evidence=RCA]
            [GO:0015996 "chlorophyll catabolic process" evidence=RCA]
            [GO:0048193 "Golgi vesicle transport" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR EMBL:AC051629 EMBL:AY052282
            IPI:IPI00530234 PIR:F86303 RefSeq:NP_564007.1 RefSeq:NP_849677.1
            RefSeq:NP_973846.1 UniGene:At.16054 UniGene:At.49889
            EnsemblPlants:AT1G16840.1 EnsemblPlants:AT1G16840.3
            EnsemblPlants:AT1G16840.4 GeneID:838255 KEGG:ath:AT1G16840
            TAIR:At1g16840 HOGENOM:HOG000241009 InParanoid:Q9FZ44 OMA:QLMETKT
            ProtClustDB:CLSN2687833 Genevestigator:Q9FZ44 Uniprot:Q9FZ44
        Length = 161

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 83/139 (59%), Positives = 107/139 (76%)

Query:    29 IPSSRLVPRRTQSNQPDASSDVYE--TSGSSST--DPLISKLEDAIHRIIVRRSAPDWLP 84
             +PSS LV  R+QS+  D   D+YE  TS +S +  DPLI KLEDA+HRI VRR+ PDWLP
Sbjct:    24 LPSSHLVSFRSQSS--DRRGDLYEIDTSAASQSPSDPLIQKLEDAVHRIFVRRAQPDWLP 81

Query:    85 FLPGSSYWVPPPKS--QFYGVAQLVEKLANPLTPEQSLSTSTVRGWPSSDYYIKG-KP-L 140
             F+PG+SYWVPPP S  Q +G+AQLV KLANPLT E+SLST++  GWPSSDY++KG +P L
Sbjct:    82 FVPGASYWVPPPGSGSQSHGIAQLVVKLANPLTHEESLSTNSSHGWPSSDYFLKGVQPQL 141

Query:   141 HKVEEGSTSSNESEAEDEE 159
              + +  +TS++ES +EDEE
Sbjct:   142 METKTETTSNSESHSEDEE 160


>TAIR|locus:2037513 [details] [associations]
            symbol:AT1G78890 "AT1G78890" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002684 EMBL:BT025613 EMBL:AK229144
            IPI:IPI00541048 RefSeq:NP_565193.1 UniGene:At.43852
            EnsemblPlants:AT1G78890.1 GeneID:844226 KEGG:ath:AT1G78890
            TAIR:At1g78890 eggNOG:NOG236957 InParanoid:Q1H551 OMA:IYEIDIA
            PhylomeDB:Q1H551 ProtClustDB:CLSN2917488 Genevestigator:Q1H551
            Uniprot:Q1H551
        Length = 155

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 75/137 (54%), Positives = 104/137 (75%)

Query:    27 LSIPSSRLVPRRTQSNQPDASSD----VYETSGSSSTDPLISKLEDAIHRIIVRRSAPDW 82
             L +PSS+ +  R+QS+   ++S+    +YE     + DPL++KLEDA+HRI+VRRSAPDW
Sbjct:    21 LLLPSSQTIFIRSQSSNRRSNSNHLGVIYEID--IAADPLVNKLEDAVHRIMVRRSAPDW 78

Query:    83 LPFLPGSSYWVPPPKSQFYGVAQLVEKLANPLTPEQSLSTSTVRGWPSSDYYIKGKPLHK 142
             LPF+PG+S+WVPPP+SQ +G+A+LVEKLANP++ E+S+S S+VRGWP SDY+IKG     
Sbjct:    79 LPFVPGASFWVPPPRSQSHGIAKLVEKLANPISDEESISISSVRGWPCSDYFIKGVKPQS 138

Query:   143 VEEGSTSSNESEAEDEE 159
             VE   TS+    +EDEE
Sbjct:   139 VETEMTSNTAYHSEDEE 155


>TAIR|locus:2059073 [details] [associations]
            symbol:AT2G19180 "AT2G19180" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC002392
            UniGene:At.39884 EMBL:AY087897 EMBL:AY102540 EMBL:AY954791
            IPI:IPI00516709 PIR:T00539 RefSeq:NP_565448.1 UniGene:At.28744
            PaxDb:O64482 PRIDE:O64482 EnsemblPlants:AT2G19180.1 GeneID:816435
            KEGG:ath:AT2G19180 TAIR:At2g19180 eggNOG:NOG301652
            HOGENOM:HOG000114990 InParanoid:O64482 OMA:HQITATK PhylomeDB:O64482
            ProtClustDB:CLSN2914946 ArrayExpress:O64482 Genevestigator:O64482
            Uniprot:O64482
        Length = 179

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 47/97 (48%), Positives = 63/97 (64%)

Query:    62 LISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLVEKLANPLTPEQSLS 121
             ++ KL + + RIIV  S PDWLPF PGSS+WVPP +     +A LV+K+ NPLT E+SLS
Sbjct:    59 ILKKLNEFVRRIIVHNSTPDWLPFAPGSSFWVPPHQITATKIANLVDKVTNPLTEEESLS 118

Query:   122 TSTVRGWPSSDYYIKGKPLHKVEEGSTSSNESEAEDE 158
              S+  GWP S ++I   P     +GS+S+ E EA  E
Sbjct:   119 LSSPYGWPCSSFFIP-PP-----DGSSSTQEEEASVE 149


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.128   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      160       146   0.00079  103 3  11 23  0.41    32
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  135 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.71u 0.21s 17.92t   Elapsed:  00:00:01
  Total cpu time:  17.71u 0.21s 17.92t   Elapsed:  00:00:01
  Start:  Sat May 11 00:25:31 2013   End:  Sat May 11 00:25:32 2013

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