BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031396
         (160 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1V9I|C Chain C, Crystal Structure Analysis Of The Site Specific Mutant
           (Q253c) Of Bovine Carbonic Anhydrase Ii
          Length = 261

 Score = 26.9 bits (58), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 39  TQSNQPDASSDVYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGS------SYW 92
           T + QPD  + V         +P + K+ DA+  I  +  + D+  F PGS       YW
Sbjct: 133 TAAQQPDGLAVVGVFLKVGDANPALQKVLDALDSIKTKGKSTDFPNFDPGSLLPNVLDYW 192

Query: 93  VPP 95
             P
Sbjct: 193 TYP 195


>pdb|1V9E|A Chain A, Crystal Structure Analysis Of Bovine Carbonic Anhydrase Ii
 pdb|1V9E|B Chain B, Crystal Structure Analysis Of Bovine Carbonic Anhydrase Ii
          Length = 259

 Score = 26.6 bits (57), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 39  TQSNQPDASSDVYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGS------SYW 92
           T + QPD  + V         +P + K+ DA+  I  +  + D+  F PGS       YW
Sbjct: 131 TAAQQPDGLAVVGVFLKVGDANPALQKVLDALDSIKTKGKSTDFPNFDPGSLLPNVLDYW 190

Query: 93  VPP 95
             P
Sbjct: 191 TYP 193


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.128    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,571,066
Number of Sequences: 62578
Number of extensions: 161626
Number of successful extensions: 287
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 6
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)