BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031396
(160 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2IBB3|CFTR_RHIFE Cystic fibrosis transmembrane conductance regulator OS=Rhinolophus
ferrumequinum GN=CFTR PE=3 SV=1
Length = 1482
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 48 SDVYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLV 107
SD+Y+ S + S D L KLE R + + P + L +W + FYG+ +
Sbjct: 35 SDIYQISSADSADNLSEKLEREWDRELASKKNPKLINALQRCFFW----RFTFYGILLYL 90
Query: 108 EKLANPLTP 116
++ + P
Sbjct: 91 GEVTKAIQP 99
>sp|Q00555|CFTR_SHEEP Cystic fibrosis transmembrane conductance regulator OS=Ovis aries
GN=CFTR PE=1 SV=2
Length = 1481
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 48 SDVYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLV 107
SD+Y S S S D L KLE R + + P + L +W + FYG+ +
Sbjct: 35 SDIYHISSSDSADNLSEKLEREWDRELASKKNPKLINALRRCFFW----RFMFYGIILYL 90
Query: 108 EKLANPLTP 116
++ + P
Sbjct: 91 GEVTKAVQP 99
>sp|Q6PQZ2|CFTR_PIG Cystic fibrosis transmembrane conductance regulator OS=Sus scrofa
GN=CFTR PE=2 SV=1
Length = 1482
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 48 SDVYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLV 107
SD+Y S S S D L KLE R + + P + L +W + FYG+ +
Sbjct: 35 SDIYHISSSDSADNLSEKLEREWDRELASKKNPKLINALRRCFFW----RFMFYGIILYL 90
Query: 108 EKLANPLTP 116
++ + P
Sbjct: 91 GEVTKAVQP 99
>sp|Q09YJ4|CFTR_MUNMU Cystic fibrosis transmembrane conductance regulator OS=Muntiacus
muntjak GN=CFTR PE=3 SV=1
Length = 1481
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 48 SDVYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLV 107
SD+Y S S S D L KLE R + + P + L +W + FYG+ +
Sbjct: 35 SDIYHISSSDSADNLSEKLEREWDRELASKKNPKLINALRRCFFW----RFMFYGIILYL 90
Query: 108 EKLANPLTP 116
++ + P
Sbjct: 91 GEVTKAVQP 99
>sp|Q07DW5|CFTR_MUNRE Cystic fibrosis transmembrane conductance regulator OS=Muntiacus
reevesi GN=CFTR PE=3 SV=1
Length = 1481
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 48 SDVYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLV 107
SD+Y S S S D L KLE R + + P + L +W + FYG+ +
Sbjct: 35 SDIYHISSSDSADNLSEKLEREWDRELASKKNPKLINALRRCFFW----RFMFYGIILYL 90
Query: 108 EKLANPLTP 116
++ + P
Sbjct: 91 GEVTKAVQP 99
>sp|P35071|CFTR_BOVIN Cystic fibrosis transmembrane conductance regulator OS=Bos taurus
GN=CFTR PE=2 SV=2
Length = 1481
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 48 SDVYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLV 107
SD+Y S S S D L KLE R + + P + L +W + FYG+ +
Sbjct: 35 SDIYHISSSDSADNLSEKLEREWDRELASKKNPKLINALRRCFFW----RFMFYGIILYL 90
Query: 108 EKLANPLTP 116
++ + P
Sbjct: 91 GEVTKAVQP 99
>sp|Q2QLA3|CFTR_HORSE Cystic fibrosis transmembrane conductance regulator OS=Equus
caballus GN=CFTR PE=3 SV=1
Length = 1481
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 48 SDVYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLV 107
SD+Y+ + S D L KLE R +V + P + L +W + FYG+ +
Sbjct: 35 SDIYQIPSADSADNLSEKLEREWDRELVSKKNPKLINALRRCFFW----RFMFYGIILYL 90
Query: 108 EKLANPLTP 116
++ + P
Sbjct: 91 GEVTKAVQP 99
>sp|Q6IMN6|CAPR2_HUMAN Caprin-2 OS=Homo sapiens GN=CAPRIN2 PE=2 SV=1
Length = 1127
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 29 IPSSRLVPRRTQSNQPDASSDVYETSGSSST---DPLI--SKLEDAIHRI 73
IP+ +L+PR+ + D V++ GSSST DP++ KL+D + +I
Sbjct: 578 IPNDQLLPRKLNTEPKDVPKPVHQPVGSSSTLPKDPVLRKEKLQDLMTQI 627
>sp|Q01371|WC1_NEUCR White collar 1 protein OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=wc-1
PE=2 SV=2
Length = 1167
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 36 PRRTQSNQPDASSDVYETSGSSSTDPLISKLEDAIHRIIVRRSAP 80
P Q N +SDV + GS S D +I + D +HR RRS P
Sbjct: 72 PTTNQGNSTIHASDVTMSGGSDSLDEIIQQNLDEMHR---RRSVP 113
>sp|Q07DY5|CFTR_COLGU Cystic fibrosis transmembrane conductance regulator OS=Colobus
guereza GN=CFTR PE=3 SV=1
Length = 1481
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 38 RTQSNQPDASSDVYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPK 97
R Q SSD+Y+ + S D L KLE R + + P + L +W +
Sbjct: 25 RKGYRQRLESSDIYQIPSADSADYLSEKLEREWDRELASKKNPKLINALRRCFFW----R 80
Query: 98 SQFYGVAQLVEKLANPLTP 116
FYG+ + ++ + P
Sbjct: 81 FMFYGILLYLGEVTKAVQP 99
>sp|Q00PJ2|CFTR_ATEAB Cystic fibrosis transmembrane conductance regulator OS=Atelerix
albiventris GN=CFTR PE=3 SV=1
Length = 1483
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 48 SDVYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLV 107
SD+Y+ + S D L KLE R + + P + L +W K FYG+ +
Sbjct: 35 SDIYQIPSTDSADNLSEKLEREWDRELASKKNPKLINALRRCFFW----KFMFYGILLYL 90
Query: 108 EKLANPLTP 116
++ + P
Sbjct: 91 GEVTKAVQP 99
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.125 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,652,606
Number of Sequences: 539616
Number of extensions: 2238822
Number of successful extensions: 5454
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 5448
Number of HSP's gapped (non-prelim): 31
length of query: 160
length of database: 191,569,459
effective HSP length: 108
effective length of query: 52
effective length of database: 133,290,931
effective search space: 6931128412
effective search space used: 6931128412
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)