Query 031396
Match_columns 160
No_of_seqs 40 out of 42
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 21:45:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fc9_B Uncharacterized protein 54.1 18 0.00063 29.7 4.9 36 62-97 33-68 (208)
2 3ktp_B Trinucleotide repeat-co 30.2 19 0.00063 20.5 1.0 14 78-92 2-16 (22)
3 3qr8_A GPV, baseplate assembly 28.0 42 0.0014 25.9 3.0 21 78-98 40-64 (211)
4 2gzd_C RAB11 family-interactin 25.1 43 0.0015 25.2 2.5 30 55-84 61-92 (107)
5 3pe0_A Plectin; cytoskeleton, 22.1 21 0.0007 28.9 0.2 24 84-110 241-264 (283)
6 2oyz_A UPF0345 protein VPA0057 20.8 25 0.00087 25.5 0.5 20 78-97 58-77 (94)
7 3r6n_A Desmoplakin; spectrin r 17.3 30 0.001 30.3 0.2 24 84-110 326-349 (450)
8 3tso_C RAB11 family-interactin 17.2 83 0.0028 22.3 2.5 25 59-83 33-59 (75)
9 2ozi_A Hypothetical protein RP 15.7 52 0.0018 22.4 1.1 15 82-96 60-74 (98)
10 2l08_A Regulator of nonsense t 15.5 26 0.00088 25.4 -0.6 31 109-141 16-48 (97)
No 1
>4fc9_B Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, all-helical bilobal; HET: MSE; 1.80A {Xanthomonas campestris PV}
Probab=54.11 E-value=18 Score=29.69 Aligned_cols=36 Identities=19% Similarity=0.481 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccCCCCCccccCCCC
Q 031396 62 LISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPK 97 (160)
Q Consensus 62 ~irRLEdaIh~i~vr~AaPDWLPF~PGsSyWVPP~~ 97 (160)
.+.|+||..+-.+-.----+=-||+-|.-|++|..+
T Consensus 33 AlerIedta~Amls~vIDeeRNPFlegAPsylPeKR 68 (208)
T 4fc9_B 33 ALERIEDTAQAMLSTVIDEERNPFLEGAPSYLPGKR 68 (208)
T ss_dssp HHHHHHHHHHHHHHHHHTSCBCTTSTTCCBCSTTTS
T ss_pred HHHHHHHHHHHHHHHHhccccCchhcCCCccCcCCC
Confidence 688999999887755556677899999999999875
No 2
>3ktp_B Trinucleotide repeat-containing gene 6C protein; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding; 1.50A {Homo sapiens}
Probab=30.17 E-value=19 Score=20.48 Aligned_cols=14 Identities=50% Similarity=1.232 Sum_probs=9.6
Q ss_pred cCCCccc-CCCCCccc
Q 031396 78 SAPDWLP-FLPGSSYW 92 (160)
Q Consensus 78 AaPDWLP-F~PGsSyW 92 (160)
+.+.|-| |.||. +|
T Consensus 2 s~~sWpPef~pg~-pw 16 (22)
T 3ktp_B 2 SSINWPPEFHPGV-PW 16 (26)
T ss_pred CcccCCcccccCC-cc
Confidence 4567777 78887 55
No 3
>3qr8_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; HET: MSE; 2.03A {Enterobacteria phage P2}
Probab=27.96 E-value=42 Score=25.93 Aligned_cols=21 Identities=33% Similarity=0.745 Sum_probs=12.2
Q ss_pred cCCCcccCCCC----CccccCCCCC
Q 031396 78 SAPDWLPFLPG----SSYWVPPPKS 98 (160)
Q Consensus 78 AaPDWLPF~PG----sSyWVPP~~~ 98 (160)
..=+|||++-- ..+|.||..+
T Consensus 40 ~~t~wl~~~~~~ag~~~~~~~P~vG 64 (211)
T 3qr8_A 40 MCTDWLQWLTHRAGRSRTWWAPSVG 64 (211)
T ss_dssp EECCCEEECCSCBSSSBCCCCCCTT
T ss_pred ccceeEEeEcccccCCceEeCCCCC
Confidence 35689998532 2356666554
No 4
>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} SCOP: h.1.31.1 PDB: 2gzh_B* 2k6s_A
Probab=25.09 E-value=43 Score=25.25 Aligned_cols=30 Identities=33% Similarity=0.448 Sum_probs=21.8
Q ss_pred CCCCCchHHHHHHHHHHHHHHh--hcCCCccc
Q 031396 55 GSSSTDPLISKLEDAIHRIIVR--RSAPDWLP 84 (160)
Q Consensus 55 ~~ss~d~~irRLEdaIh~i~vr--~AaPDWLP 84 (160)
+-+..|.-|+.|||-|+..+|| .-+|+=|-
T Consensus 61 ~l~~kd~~IrELEDYID~LLvRVME~tP~ILq 92 (107)
T 2gzd_C 61 LLRRKDTHIRELEDYIDNLLVRVMEETPSILR 92 (107)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHCGGGGB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence 3456677899999999998887 35676664
No 5
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=22.13 E-value=21 Score=28.93 Aligned_cols=24 Identities=29% Similarity=0.703 Sum_probs=16.3
Q ss_pred cCCCCCccccCCCCCCCcchHHHHHHh
Q 031396 84 PFLPGSSYWVPPPKSQFYGVAQLVEKL 110 (160)
Q Consensus 84 PF~PGsSyWVPP~~~~~~gva~Lv~kl 110 (160)
=|+|+.+|++||+-.. ..+.+.+|
T Consensus 241 g~vPs~~~~ip~p~~e---a~~~~~~l 264 (283)
T 3pe0_A 241 AAVPSVCFLVPPPNQE---AQEAVTRL 264 (283)
T ss_dssp EEEEGGGEECCSCCHH---HHHHHHHH
T ss_pred eeccceEEeeCCCCHH---HHHHHHHH
Confidence 3679999999997642 23355554
No 6
>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22
Probab=20.76 E-value=25 Score=25.52 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=17.3
Q ss_pred cCCCcccCCCCCccccCCCC
Q 031396 78 SAPDWLPFLPGSSYWVPPPK 97 (160)
Q Consensus 78 AaPDWLPF~PGsSyWVPP~~ 97 (160)
..+||.-|.+|.+|=||...
T Consensus 58 g~~ew~~~~aGesF~Vpans 77 (94)
T 2oyz_A 58 GEADWTTYSSGESFDVEGNS 77 (94)
T ss_dssp TCSSCEEEETTCEEEECSSE
T ss_pred CCCcCEEECCCCEEEECCCC
Confidence 46899999999999999653
No 7
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=17.30 E-value=30 Score=30.29 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=17.1
Q ss_pred cCCCCCccccCCCCCCCcchHHHHHHh
Q 031396 84 PFLPGSSYWVPPPKSQFYGVAQLVEKL 110 (160)
Q Consensus 84 PF~PGsSyWVPP~~~~~~gva~Lv~kl 110 (160)
=|||+.+|++||+-. ...+.+.+|
T Consensus 326 ~~vPavcf~ipppd~---eai~~a~~l 349 (450)
T 3r6n_A 326 MLVPSVGLIIPPPNP---LAVDLSCKI 349 (450)
T ss_dssp EEEEGGGEECCSCCH---HHHHHHHHH
T ss_pred eccceeEEecCCCCH---HHHHHHHHH
Confidence 589999999999753 334455554
No 8
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=17.21 E-value=83 Score=22.29 Aligned_cols=25 Identities=40% Similarity=0.608 Sum_probs=17.2
Q ss_pred CchHHHHHHHHHHHHHHhh--cCCCcc
Q 031396 59 TDPLISKLEDAIHRIIVRR--SAPDWL 83 (160)
Q Consensus 59 ~d~~irRLEdaIh~i~vr~--AaPDWL 83 (160)
.|.-++-|||-|+..+||= -+|.=|
T Consensus 33 k~~~v~eLEdYID~LLvRVME~~P~iL 59 (75)
T 3tso_C 33 KDTHIRELEDYIDNLLVRVMEETPSIL 59 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHh
Confidence 4557778999999888762 345444
No 9
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=15.69 E-value=52 Score=22.38 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=13.1
Q ss_pred cccCCCCCccccCCC
Q 031396 82 WLPFLPGSSYWVPPP 96 (160)
Q Consensus 82 WLPF~PGsSyWVPP~ 96 (160)
+.++.||.+||+|+-
T Consensus 60 ~~~l~aGd~~~~p~G 74 (98)
T 2ozi_A 60 LAQLKTGRSYARKAG 74 (98)
T ss_dssp CCCBCTTCCEEECTT
T ss_pred EEEECCCCEEEECCC
Confidence 578999999999974
No 10
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=15.46 E-value=26 Score=25.41 Aligned_cols=31 Identities=19% Similarity=0.098 Sum_probs=21.3
Q ss_pred HhcCCCCcccccccccccCCCCc--cccccCCCCc
Q 031396 109 KLANPLTPEQSLSTSTVRGWPSS--DYYIKGKPLH 141 (160)
Q Consensus 109 kla~plteeEals~st~RGWPss--~YFi~G~~p~ 141 (160)
+|...||+||-+....+ ||.- -||++|+.+.
T Consensus 16 rLPP~Ltee~F~~~l~~--~~~~d~~~fv~G~~s~ 48 (97)
T 2l08_A 16 RLPPGLTKEQLEEQLRP--LPAHDYFEFFAADLSL 48 (97)
T ss_dssp CCCSCSCHHHHTTTTSC--CSSEEECCCCCCCSSS
T ss_pred CCCCCCCHHHHHHHhCC--cCccceEEEeCCccCC
Confidence 45556999987744433 6655 6789999876
Done!