Query 031396
Match_columns 160
No_of_seqs 40 out of 42
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 21:45:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031396.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031396hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f0ca1 b.21.1.3 (A:63-163) Ba 27.6 1.6 0.00012 30.9 -3.1 42 92-136 46-101 (101)
2 d1zrua1 b.21.1.3 (A:162-264) r 20.7 3 0.00022 29.6 -2.8 43 91-136 45-103 (103)
3 d1u5ha_ c.1.12.5 (A:) Citrate 16.0 11 0.00081 27.8 -0.7 15 75-90 3-17 (223)
4 d1u2ca1 b.1.6.2 (A:58-160) Dys 15.7 18 0.0013 23.7 0.4 20 78-97 44-65 (103)
5 d1u09a_ e.8.1.4 (A:) Viral RNA 14.1 22 0.0016 28.8 0.6 12 118-129 109-120 (476)
6 d1st6a7 a.24.9.1 (A:719-855) V 13.6 43 0.0031 23.2 2.0 26 63-88 103-130 (137)
7 d2oqpa1 a.26.1.2 (A:2-134) Int 10.5 86 0.0063 21.8 2.8 26 59-84 3-33 (133)
8 d1b0aa2 c.58.1.2 (A:2-122) Tet 10.4 19 0.0014 24.3 -0.8 31 50-80 66-101 (121)
9 d1zrja1 a.140.2.1 (A:1-37) Het 9.5 66 0.0048 18.1 1.5 12 59-70 26-37 (37)
10 d1yxba1 a.204.1.4 (A:4-91) Pho 9.5 78 0.0057 20.7 2.1 38 66-111 3-40 (88)
No 1
>d2f0ca1 b.21.1.3 (A:63-163) Baseplate protein (bpp), C-terminal domain {Lactococcus phage tp901-1 [TaxId: 35345]}
Probab=27.61 E-value=1.6 Score=30.91 Aligned_cols=42 Identities=24% Similarity=0.210 Sum_probs=27.0
Q ss_pred ccCCCCCCCcchHHHHHHhcC----------C---CC-cccccccccccCCCCcccccc
Q 031396 92 WVPPPKSQFYGVAQLVEKLAN----------P---LT-PEQSLSTSTVRGWPSSDYYIK 136 (160)
Q Consensus 92 WVPP~~~~~~gva~Lv~kla~----------p---lt-eeEals~st~RGWPss~YFi~ 136 (160)
|||.+- ++.-+..||++++. | .+ =.|...-.++|| +..|||+
T Consensus 46 ~v~~~~-rP~~~qsLvGH~ag~~~SFHIDi~p~GsitWWG~~~~~~apRG--~asYFId 101 (101)
T d2f0ca1 46 SVPNEF-CPRNRCSLVGHMVGGWNAFHIDIPSSGVCQWFGPTASSGTPRG--TGTYPID 101 (101)
T ss_dssp CCCGGG-CCSSCEEEEEEETTSSCEEEEEECTTCCCEECSCCBSSCCEEE--EEEEECC
T ss_pred cccCCc-cccceeEEEEEEcCCCceeEEEeCCCceEEEecCCCCCCCccc--ceeeecC
Confidence 888763 34577889999882 2 22 123344448888 7889986
No 2
>d1zrua1 b.21.1.3 (A:162-264) receptor binding protein, rbp, C-terminal domain {Lactococcus lactis phage p2 [TaxId: 100641]}
Probab=20.72 E-value=3 Score=29.59 Aligned_cols=43 Identities=33% Similarity=0.533 Sum_probs=25.4
Q ss_pred cccCCCCCCCcchHHHHHHhcC----------C---CC-ccc--ccccccccCCCCcccccc
Q 031396 91 YWVPPPKSQFYGVAQLVEKLAN----------P---LT-PEQ--SLSTSTVRGWPSSDYYIK 136 (160)
Q Consensus 91 yWVPP~~~~~~gva~Lv~kla~----------p---lt-eeE--als~st~RGWPss~YFi~ 136 (160)
=|||.+- ++.-+..||++++. | .+ =++ .-.-.++|| +..|||+
T Consensus 45 ~wV~~pf-rP~~~qsLvGH~ag~~~SFHIDi~p~GsitWWG~~~~~~~~apRG--~a~YFIk 103 (103)
T d1zrua1 45 TWVDRPF-RPAAVQSLVGHFAGRDTSFHIDINPNGSITWWGANIDKTPIATRG--NGSYFIK 103 (103)
T ss_dssp CCCCGGG-CCSSCEEEEEEETTSSCEEEEEECTTSCEEECSCCBCSSCEEEEE--EEEEECC
T ss_pred ceecCCC-CccceEEEEEEEcCCCceEEEEeCCCceEEEecCccCCCCCCccc--ceeEEcC
Confidence 3777652 24567789999883 1 11 012 234456677 6788885
No 3
>d1u5ha_ c.1.12.5 (A:) Citrate lyase, beta subunit {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=16.05 E-value=11 Score=27.78 Aligned_cols=15 Identities=40% Similarity=1.079 Sum_probs=11.4
Q ss_pred HhhcCCCcccCCCCCc
Q 031396 75 VRRSAPDWLPFLPGSS 90 (160)
Q Consensus 75 vr~AaPDWLPF~PGsS 90 (160)
+|++.|.|| ||||..
T Consensus 3 ~r~~~~S~L-fvPg~~ 17 (223)
T d1u5ha_ 3 LRAAGPGWL-FCPADA 17 (223)
T ss_dssp TTTSCSEEE-EEETTC
T ss_pred cCCcCCeEE-EecCCC
Confidence 467888887 788865
No 4
>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.73 E-value=18 Score=23.73 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=16.3
Q ss_pred cCCCcccCCC--CCccccCCCC
Q 031396 78 SAPDWLPFLP--GSSYWVPPPK 97 (160)
Q Consensus 78 AaPDWLPF~P--GsSyWVPP~~ 97 (160)
..|+||=|-+ |.-+|.|+..
T Consensus 44 ~LPsWl~fd~~tg~~~GtP~~~ 65 (103)
T d1u2ca1 44 ALPSWLHWDPHSHILEGLPLDT 65 (103)
T ss_dssp SCCTTEEEETTTTEEEECCCGG
T ss_pred CCCccEEEeccCCEEEEccCCC
Confidence 4599999976 7799999753
No 5
>d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease virus [TaxId: 12110]}
Probab=14.10 E-value=22 Score=28.80 Aligned_cols=12 Identities=25% Similarity=0.579 Sum_probs=9.5
Q ss_pred cccccccccCCC
Q 031396 118 QSLSTSTVRGWP 129 (160)
Q Consensus 118 Eals~st~RGWP 129 (160)
++|.++|+-|||
T Consensus 109 d~m~~~TS~GyP 120 (476)
T d1u09a_ 109 DAMEPDTAPGLP 120 (476)
T ss_dssp CCCCTTSCCCTT
T ss_pred cCCCCCCCCCCC
Confidence 345588999999
No 6
>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=13.57 E-value=43 Score=23.22 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHH--HhhcCCCcccCCCC
Q 031396 63 ISKLEDAIHRII--VRRSAPDWLPFLPG 88 (160)
Q Consensus 63 irRLEdaIh~i~--vr~AaPDWLPF~PG 88 (160)
.+.|=++++.|. |....||=||++|-
T Consensus 103 a~~l~~aV~~Vr~Al~~~~pd~l~~~~d 130 (137)
T d1st6a7 103 GYRILGAVAKVREAFQPQEPDFPPPPPD 130 (137)
T ss_dssp TTTHHHHHHHHHHHHSCCSSCSCCCCCC
T ss_pred HHHHHHHHHHHHHHHccCCcccCCCCCc
Confidence 456667777665 56789999998874
No 7
>d2oqpa1 a.26.1.2 (A:2-134) Interleukin-21 (IL-21) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.54 E-value=86 Score=21.76 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=21.4
Q ss_pred CchHHHHHHHHHHH-----HHHhhcCCCccc
Q 031396 59 TDPLISKLEDAIHR-----IIVRRSAPDWLP 84 (160)
Q Consensus 59 ~d~~irRLEdaIh~-----i~vr~AaPDWLP 84 (160)
.|-++.||+++|.. .+++.--|+||+
T Consensus 3 ~~~~~~~l~~li~~le~lk~~~~~~d~~ll~ 33 (133)
T d2oqpa1 3 QDRHMIRMRQLIDIVDQLKNYVNDLVPEFLP 33 (133)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTGGGCCCCCEE
T ss_pred chhHHHHHHHHHHHHHHHHHHhhccchhhcC
Confidence 57789999999954 478888999976
No 8
>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}
Probab=10.43 E-value=19 Score=24.27 Aligned_cols=31 Identities=23% Similarity=0.485 Sum_probs=20.6
Q ss_pred eeeecCCCCCchHHHHHH-----HHHHHHHHhhcCC
Q 031396 50 VYETSGSSSTDPLISKLE-----DAIHRIIVRRSAP 80 (160)
Q Consensus 50 l~Eid~~ss~d~~irRLE-----daIh~i~vr~AaP 80 (160)
++++.++.+++.+++.++ +.||+|||+.--|
T Consensus 66 ~~~l~~~~t~~~l~~~I~~lN~d~~v~GIlvqlPLP 101 (121)
T d1b0aa2 66 SYDLPETTSEAELLELIDTLNADNTIDGILVQLPLP 101 (121)
T ss_dssp CEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCC
T ss_pred eeeccccccHHHHHHHHHHHhCCCchhhhhhcCCCC
Confidence 666666777776655554 4579999975443
No 9
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.49 E-value=66 Score=18.14 Aligned_cols=12 Identities=25% Similarity=0.446 Sum_probs=9.5
Q ss_pred CchHHHHHHHHH
Q 031396 59 TDPLISKLEDAI 70 (160)
Q Consensus 59 ~d~~irRLEdaI 70 (160)
-+.++.||+++|
T Consensus 26 Ka~Li~RL~~al 37 (37)
T d1zrja1 26 KAELAERLQAAL 37 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 455899999886
No 10
>d1yxba1 a.204.1.4 (A:4-91) Phosphoribosyl-ATP pyrophosphatase HisE {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.46 E-value=78 Score=20.71 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhcCCCcccCCCCCccccCCCCCCCcchHHHHHHhc
Q 031396 66 LEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLVEKLA 111 (160)
Q Consensus 66 LEdaIh~i~vr~AaPDWLPF~PGsSyWVPP~~~~~~gva~Lv~kla 111 (160)
||+....|.-|++.+| |..||=.==. ..|...+..|+.
T Consensus 3 ~e~L~~~i~~r~~~~~-----p~~SYt~~L~---~~G~~~i~kKv~ 40 (88)
T d1yxba1 3 FEELFTELQHKAANGD-----PATSRTAELV---DKGVHAIGKKVV 40 (88)
T ss_dssp HHHHHHHHHHHTCC---------CCSSCCHH---HHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-----CcccHHHHHH---HCcHHHHHHHHH
Confidence 5677777777887776 7788732211 125555555544
Done!