Query 031398
Match_columns 160
No_of_seqs 163 out of 1143
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 21:48:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031398.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031398hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tffa_ d.3.1.11 (A:) Ubiquiti 99.9 1.8E-23 1.3E-27 157.6 12.4 97 49-146 128-227 (228)
2 d2hyja2 a.121.1.1 (A:83-200) P 53.5 4.9 0.00036 24.3 2.9 35 24-61 20-54 (118)
3 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 37.3 7.5 0.00055 25.2 1.8 53 47-99 33-97 (146)
4 d1ueka2 d.58.26.5 (A:149-268) 36.8 11 0.00081 22.8 2.6 27 8-34 65-91 (120)
5 d2isya1 a.4.5.24 (A:2-64) Iron 34.1 5.8 0.00042 21.8 0.7 33 70-102 4-36 (63)
6 d2ev0a1 a.4.5.24 (A:2-62) Mang 32.0 4.5 0.00032 22.1 -0.0 31 72-102 4-34 (61)
7 d1g5ma_ f.1.4.1 (A:) Bcl-2 {Hu 29.4 46 0.0034 21.4 4.9 96 2-99 8-114 (164)
8 d1y9qa1 a.35.1.8 (A:4-82) Prob 29.0 21 0.0015 19.7 2.7 30 74-103 35-64 (79)
9 d1utxa_ a.35.1.3 (A:) Putative 24.8 28 0.002 18.4 2.7 28 76-103 30-57 (66)
10 d1h70a_ d.126.1.3 (A:) Dimethy 23.6 38 0.0028 22.8 3.8 28 4-31 32-59 (255)
11 d2htsa_ a.4.5.22 (A:) Heat-sho 23.5 23 0.0017 20.7 2.2 26 8-33 53-78 (92)
12 d1xsza1 a.118.3.1 (A:1-197) Ra 23.3 68 0.005 21.2 5.0 14 72-85 90-103 (197)
13 d1t0aa_ d.79.5.1 (A:) 2C-methy 22.3 19 0.0014 23.4 1.8 16 27-42 36-51 (158)
14 d2r1jl1 a.35.1.2 (L:3-68) P22 21.4 35 0.0026 17.9 2.7 28 76-103 32-59 (66)
15 d2g7sa2 a.121.1.1 (A:77-192) P 21.0 42 0.003 19.5 3.2 31 30-63 25-55 (116)
No 1
>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.90 E-value=1.8e-23 Score=157.60 Aligned_cols=97 Identities=12% Similarity=0.223 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhccccccccccc--hHHHHHHh-hcCCceeCcHHHHHHHHHHhCCeEEEEecCCCceeEEecCCCCCCC
Q 031398 49 HVRKEVVKQLKDCRSMYEGYVPM--KYKRYYKN-MAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPK 125 (160)
Q Consensus 49 ~lR~~~v~~i~~n~~~f~~~i~~--~~~~yl~~-m~~~g~wg~~~ei~A~a~~~~v~I~V~~~~~~~~~~~~~p~~~~~~ 125 (160)
.+|..+..+|++|++.|.+|+++ ++++||.+ +.+.++|||++||.|+|++|+++|.|+..+.....+.....+....
T Consensus 128 ~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~~~~~~ 207 (228)
T d1tffa_ 128 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAAT 207 (228)
T ss_dssp HHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSS
T ss_pred HHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccCCCCCC
Confidence 36999999999999999999964 78999985 8899999999999999999999999998765433222211122346
Q ss_pred CeEEEEeCCCCcceeeecCCC
Q 031398 126 RELWLSFWSEVHYNSLYDIRD 146 (160)
Q Consensus 126 ~~I~L~~~~~~HY~~l~~~~~ 146 (160)
++|+|+| .++|||+|++.+.
T Consensus 208 ~~I~Lly-~pgHYdiLY~~~~ 227 (228)
T d1tffa_ 208 PSVYLLY-KTSHYNILYAADK 227 (228)
T ss_dssp CSEEEEE-ETTEEEEEEECCC
T ss_pred CEEEEEe-CCCCcccCccCCC
Confidence 7899999 6899999998763
No 2
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=53.48 E-value=4.9 Score=24.33 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=24.7
Q ss_pred eeCCCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhc
Q 031398 24 KVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDC 61 (160)
Q Consensus 24 ~v~gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n 61 (160)
+..-.|-|++-.++..+.... ..+|+.+.++....
T Consensus 20 ~~~~~~GC~~~~~~~E~~~~~---~~ir~~l~~~~~~~ 54 (118)
T d2hyja2 20 EPLLPGGCLLTAALSEYDGRP---GRVRDAVAEVWSRW 54 (118)
T ss_dssp SCSSTTSCHHHHHHHHHTTST---THHHHHHHHHHHHH
T ss_pred CCCCCCCChhHhHHHHcCCCC---HHHHHHHHHHHHHH
Confidence 344456899998888887666 57777777766443
No 3
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=37.26 E-value=7.5 Score=25.16 Aligned_cols=53 Identities=11% Similarity=0.258 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhccccccccccc----hHHHH------HHhhcCCc--eeCcHHHHHHHHHHh
Q 031398 47 HKHVRKEVVKQLKDCRSMYEGYVPM----KYKRY------YKNMAKVG--EWGDHVTLQAAADKF 99 (160)
Q Consensus 47 ~~~lR~~~v~~i~~n~~~f~~~i~~----~~~~y------l~~m~~~g--~wg~~~ei~A~a~~~ 99 (160)
...+|+.+-+.+++|...|+.++.. +-+.| ...+-.+| .||-=+.+.+++-.+
T Consensus 33 ~~tik~~v~~i~~kh~~~F~~ml~~L~i~~~~~~~~f~~V~~elF~DG~~NWGRIVaLfaFg~~l 97 (146)
T d1k3ka_ 33 LSPIKLYITGLMRDKESLFEAMLANVRFHSTTGIDQLGLSMLQVSGDGNMNWGRALAILTFGSFV 97 (146)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHTHHHHHCSSCSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999988877642 22222 34566677 499988888876433
No 4
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}
Probab=36.76 E-value=11 Score=22.82 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=22.4
Q ss_pred HHHHHHHHhhCCcEEeeeCCCCchHHH
Q 031398 8 HQRLLQRLNVYGLYEVKVSGDGNCQFR 34 (160)
Q Consensus 8 ~~~l~~~l~~~gl~~~~v~gDGnClF~ 34 (160)
...+.+.|...|-....+.|-|.|+|-
T Consensus 65 l~~~~~~l~~~g~~~~~mSGSGst~F~ 91 (120)
T d1ueka2 65 LKEVRGRMRALGLRGVLMSGSGSAFFG 91 (120)
T ss_dssp HHHHHHHHHHTTCEEEEECTTSSCEEE
T ss_pred HHHHHHHHHHhhhhheeecCCCCeEEE
Confidence 456778889999888899999999864
No 5
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=34.07 E-value=5.8 Score=21.78 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=22.8
Q ss_pred cchHHHHHHhhcCCceeCcHHHHHHHHHHhCCe
Q 031398 70 PMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAK 102 (160)
Q Consensus 70 ~~~~~~yl~~m~~~g~wg~~~ei~A~a~~~~v~ 102 (160)
..+.++|++.+..-..+++.+-..-+|+.+++.
T Consensus 4 s~s~EdYL~~I~~L~~~~~~v~~~~iA~~L~vs 36 (63)
T d2isya1 4 VDTTEMYLRTIYDLEEEGVTPLRARIAERLDQS 36 (63)
T ss_dssp SSHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCC
Confidence 356788988775545556666677788888763
No 6
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=32.04 E-value=4.5 Score=22.11 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=21.2
Q ss_pred hHHHHHHhhcCCceeCcHHHHHHHHHHhCCe
Q 031398 72 KYKRYYKNMAKVGEWGDHVTLQAAADKFAAK 102 (160)
Q Consensus 72 ~~~~yl~~m~~~g~wg~~~ei~A~a~~~~v~ 102 (160)
+.++|++.+..-..+++.+-...+|+.+++.
T Consensus 4 s~EdYLk~I~~l~~~~~~v~~~~iA~~L~vs 34 (61)
T d2ev0a1 4 SMEDYIEQIYMLIEEKGYARVSDIAEALAVH 34 (61)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHhcCCCccHHHHHHHhCCC
Confidence 4678888765444455666677788888763
No 7
>d1g5ma_ f.1.4.1 (A:) Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.35 E-value=46 Score=21.42 Aligned_cols=96 Identities=9% Similarity=0.077 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHHHhhCCcEEeeeCCCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhccccccccccc----------
Q 031398 2 SDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPM---------- 71 (160)
Q Consensus 2 ~~~~~~~~~l~~~l~~~gl~~~~v~gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~~f~~~i~~---------- 71 (160)
+++++-.+=+.-+|++.|+.....+.+--+.-. +..-.....-+..||+..-+..++++..|..+...
T Consensus 8 ~~Relv~dyI~yrL~q~g~~~~~~~~~~~~~~~--~~~~~~~~~v~~~Lr~vgdele~~~~~~f~~m~~~L~i~~~~~~~ 85 (164)
T d1g5ma_ 8 DNREIVMKYIHYKLSQRGYEWDAGDDVEENRTE--APEGTESEVVHLALRQAGDDFSRRYRGDFAEMSSQLHLTPFTARG 85 (164)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCTTTCCSCSCSS--CSCCSSSSSHHHHHHHHHHHHHHHHCSSSTGGGGSSCCSHHHHHH
T ss_pred chHHHHHHHHHHHHhccCCCccCCCccccccCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHH
Confidence 456667777778888888743221111000000 00000012346678887777777888888877641
Q ss_pred hHHHHHHhhcCC-ceeCcHHHHHHHHHHh
Q 031398 72 KYKRYYKNMAKV-GEWGDHVTLQAAADKF 99 (160)
Q Consensus 72 ~~~~yl~~m~~~-g~wg~~~ei~A~a~~~ 99 (160)
.+.+-.+.+-.+ -.||-=+.+.++|-.+
T Consensus 86 ~f~~Va~elF~dginWGRIVal~~F~~~l 114 (164)
T d1g5ma_ 86 RFATVVEELFRDGVNWGRIVAFFEFGGVM 114 (164)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 122223344333 5899888888777554
No 8
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=29.02 E-value=21 Score=19.68 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=22.2
Q ss_pred HHHHHhhcCCceeCcHHHHHHHHHHhCCeE
Q 031398 74 KRYYKNMAKVGEWGDHVTLQAAADKFAAKI 103 (160)
Q Consensus 74 ~~yl~~m~~~g~wg~~~ei~A~a~~~~v~I 103 (160)
..++.++......-+-..+..+|++|++++
T Consensus 35 ~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~ 64 (79)
T d1y9qa1 35 KAMLGQIERGESSPTIATLWKIASGLEASF 64 (79)
T ss_dssp HHHHHHHHTTCSCCCHHHHHHHHHHHTCCS
T ss_pred hhHHHHHHcCCCCCCHHHHHHHHHHHCCCH
Confidence 345666666555556777889999999976
No 9
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=24.79 E-value=28 Score=18.44 Aligned_cols=28 Identities=7% Similarity=-0.153 Sum_probs=19.9
Q ss_pred HHHhhcCCceeCcHHHHHHHHHHhCCeE
Q 031398 76 YYKNMAKVGEWGDHVTLQAAADKFAAKI 103 (160)
Q Consensus 76 yl~~m~~~g~wg~~~ei~A~a~~~~v~I 103 (160)
++.++......-+...+..+|+.|++++
T Consensus 30 ~is~~e~g~~~p~~~~l~~ia~~l~v~~ 57 (66)
T d1utxa_ 30 TINGIEKNKYNPSLQLALKIAYYLNTPL 57 (66)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHTTSCH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHCCCH
Confidence 3444555555566777889999999886
No 10
>d1h70a_ d.126.1.3 (A:) Dimethylarginine dimethylaminohydrolase DDAH {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.65 E-value=38 Score=22.83 Aligned_cols=28 Identities=14% Similarity=0.130 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhCCcEEeeeCCCCch
Q 031398 4 ASLDHQRLLQRLNVYGLYEVKVSGDGNC 31 (160)
Q Consensus 4 ~~~~~~~l~~~l~~~gl~~~~v~gDGnC 31 (160)
+..+.+.|.+.|++.|..+..++++..|
T Consensus 32 a~~e~~~l~~~L~~~Gv~V~~~~~~~~~ 59 (255)
T d1h70a_ 32 ALEQHNAYIRALQTCDVDITLLPPDERF 59 (255)
T ss_dssp HHHHHHHHHHHHTTSSCEEEEECCCTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCCCCC
Confidence 5668889999999999999988887655
No 11
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=23.53 E-value=23 Score=20.71 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=18.5
Q ss_pred HHHHHHHHhhCCcEEeeeCCCCchHH
Q 031398 8 HQRLLQRLNVYGLYEVKVSGDGNCQF 33 (160)
Q Consensus 8 ~~~l~~~l~~~gl~~~~v~gDGnClF 33 (160)
..++-++|..+|++.+.-.+++.+.+
T Consensus 53 ~~SF~RQLn~yGF~kv~~~~~~~~~~ 78 (92)
T d2htsa_ 53 FASFVRQLNMYGWHKVQDVKSGSMLS 78 (92)
T ss_dssp HHHHHHHHHHTTEECCCCSCTTC---
T ss_pred HHHHHHHHHhCCeEEeecCCCCCccc
Confidence 56788999999998777666666544
No 12
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=23.32 E-value=68 Score=21.23 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=6.9
Q ss_pred hHHHHHHhhcCCce
Q 031398 72 KYKRYYKNMAKVGE 85 (160)
Q Consensus 72 ~~~~yl~~m~~~g~ 85 (160)
.+..++..+.-+|+
T Consensus 90 ALR~~l~~f~LpgE 103 (197)
T d1xsza1 90 GLRTFLKTFKLPGE 103 (197)
T ss_dssp HHHHHHHTSCBCSS
T ss_pred HHHHHHHhccCCch
Confidence 44455555555553
No 13
>d1t0aa_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF {Shewanella oneidensis [TaxId: 70863]}
Probab=22.29 E-value=19 Score=23.41 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=14.5
Q ss_pred CCCchHHHHHHHHHhc
Q 031398 27 GDGNCQFRALSDQMYK 42 (160)
Q Consensus 27 gDGnClF~ais~~l~~ 42 (160)
.||+-++||+.+++.|
T Consensus 36 SDgDv~~HAi~DAilG 51 (158)
T d1t0aa_ 36 SDGDVVLHAISDAILG 51 (158)
T ss_dssp SSCCHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHhh
Confidence 5999999999999865
No 14
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=21.43 E-value=35 Score=17.86 Aligned_cols=28 Identities=7% Similarity=-0.047 Sum_probs=18.0
Q ss_pred HHHhhcCCceeCcHHHHHHHHHHhCCeE
Q 031398 76 YYKNMAKVGEWGDHVTLQAAADKFAAKI 103 (160)
Q Consensus 76 yl~~m~~~g~wg~~~ei~A~a~~~~v~I 103 (160)
++.+++....--.-..+..+|++|++++
T Consensus 32 ~i~~~e~g~~~p~~~~l~~ia~~l~v~~ 59 (66)
T d2r1jl1 32 AISQWERSETEPNGENLLALSKALQCSP 59 (66)
T ss_dssp HHHHHHTTSSCCBHHHHHHHHHHTTSCH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCCH
Confidence 3444444333345667888999999876
No 15
>d2g7sa2 a.121.1.1 (A:77-192) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=20.96 E-value=42 Score=19.50 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=23.1
Q ss_pred chHHHHHHHHHhcCcchHHHHHHHHHHHHhhccc
Q 031398 30 NCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRS 63 (160)
Q Consensus 30 nClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~ 63 (160)
-|++-.++.-+.... ..+|+.+.+++....+
T Consensus 25 gCl~~~~a~E~~~~~---~~v~~~~~~~~~~~~~ 55 (116)
T d2g7sa2 25 FCVCALLASEIPVLP---ETVVLEVRAHFRSLSD 55 (116)
T ss_dssp SCHHHHHHTTGGGSC---HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhccCC---HHHHHHHHHHHHHHHH
Confidence 599998888777666 6788888777755544
Done!