BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031399
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F5O|A Chain A, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|B Chain B, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|C Chain C, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|D Chain D, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|E Chain E, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|F Chain F, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|G Chain G, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|H Chain H, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
Length = 148
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 101 ELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHAT 151
++ I+Y+S A ++++ A V++ G+ + +V+ TGKL+ T
Sbjct: 85 DMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHT 135
>pdb|2H4U|A Chain A, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|B Chain B, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|C Chain C, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|D Chain D, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
Length = 145
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 101 ELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHAT 151
++ I+Y+S A ++++ A V++ G+ + +V+ TGKL+ T
Sbjct: 90 DMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHT 140
>pdb|2CY9|A Chain A, Crystal Structure Of Thioesterase Superfamily Member2 From
Mus Musculus
pdb|2CY9|B Chain B, Crystal Structure Of Thioesterase Superfamily Member2 From
Mus Musculus
Length = 140
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 104 ISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHAT 151
I+Y S A E+++ A +++ G+ + +V+ TGKL+ T
Sbjct: 88 ITYXSPAKIGEEIVITAHILKQGKTLAFASVDLTNKTTGKLIAQGRHT 135
>pdb|2F0X|A Chain A, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|B Chain B, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|C Chain C, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|D Chain D, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|E Chain E, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|F Chain F, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|G Chain G, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|H Chain H, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
Length = 148
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 104 ISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFY 153
I+Y S A ++++ A V++ G+ + +V+ TGKL+ T +
Sbjct: 88 ITYXSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKH 137
>pdb|3G0S|A Chain A, Dihydrodipicolinate Synthase From Salmonella Typhimurium
Lt2
pdb|3G0S|B Chain B, Dihydrodipicolinate Synthase From Salmonella Typhimurium
Lt2
Length = 316
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 122 VVRSGRNVTVVAVEF--KFNDTGKLVCASHATFYNTP 156
+ +G N T A+ +FND+G + C + +YN P
Sbjct: 98 IAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRP 134
>pdb|2PUR|A Chain A, Structure Of Dihydrodipicolinate Synthase Mutant Thr44ser
At 1.7 A.
pdb|2PUR|B Chain B, Structure Of Dihydrodipicolinate Synthase Mutant Thr44ser
At 1.7 A
Length = 292
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 122 VVRSGRNVTVVAVEF--KFNDTGKLVCASHATFYNTP 156
+ +G N T A+ +FND+G + C + +YN P
Sbjct: 74 IAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRP 110
>pdb|2A6L|A Chain A, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138h
pdb|2A6L|B Chain B, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138h
Length = 292
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 122 VVRSGRNVTVVAVEF--KFNDTGKLVCASHATFYNTP 156
+ +G N T A+ +FND+G + C + +YN P
Sbjct: 74 IAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRP 110
>pdb|2A6N|A Chain A, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138a
pdb|2A6N|B Chain B, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138a
Length = 292
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 122 VVRSGRNVTVVAVEF--KFNDTGKLVCASHATFYNTP 156
+ +G N T A+ +FND+G + C + +YN P
Sbjct: 74 IAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRP 110
>pdb|3I7Q|A Chain A, Dihydrodipicolinate Synthase Mutant - K161a
pdb|3I7Q|B Chain B, Dihydrodipicolinate Synthase Mutant - K161a
pdb|3I7R|A Chain A, Dihydrodipicolinate Synthase - K161r
pdb|3I7R|B Chain B, Dihydrodipicolinate Synthase - K161r
pdb|3I7S|A Chain A, Dihydrodipicolinate Synthase Mutant - K161a - With The
Substrate Pyruvate Bound In The Active Site.
pdb|3I7S|B Chain B, Dihydrodipicolinate Synthase Mutant - K161a - With The
Substrate Pyruvate Bound In The Active Site
Length = 292
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 122 VVRSGRNVTVVAVEF--KFNDTGKLVCASHATFYNTP 156
+ +G N T A+ +FND+G + C + +YN P
Sbjct: 74 IAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRP 110
>pdb|1DHP|A Chain A, Dihydrodipicolinate Synthase
pdb|1DHP|B Chain B, Dihydrodipicolinate Synthase
pdb|1YXC|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase To 1.9 A
pdb|1YXC|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase To 1.9 A
pdb|1YXD|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase Bound
With Allosteric Inhibitor (S)-Lysine To 2.0 A
pdb|1YXD|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase Bound
With Allosteric Inhibitor (S)-Lysine To 2.0 A
pdb|2ATS|A Chain A, Dihydrodipicolinate Synthase Co-Crystallised With
(S)-Lysine
pdb|2ATS|B Chain B, Dihydrodipicolinate Synthase Co-Crystallised With
(S)-Lysine
Length = 292
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 122 VVRSGRNVTVVAVEF--KFNDTGKLVCASHATFYNTP 156
+ +G N T A+ +FND+G + C + +YN P
Sbjct: 74 IAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRP 110
>pdb|1S5W|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133
pdb|1S5W|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133
Length = 292
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 122 VVRSGRNVTVVAVEF--KFNDTGKLVCASHATFYNTP 156
+ +G N T A+ +FND+G + C + +YN P
Sbjct: 74 IAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRP 110
>pdb|1S5T|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Thr44 To Val44
pdb|1S5T|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Thr44 To Val44
Length = 292
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 122 VVRSGRNVTVVAVEF--KFNDTGKLVCASHATFYNTP 156
+ +G N T A+ +FND+G + C + +YN P
Sbjct: 74 IAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRP 110
>pdb|3C0J|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase
Complexed With Hydroxypyruvate
pdb|3C0J|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase
Complexed With Hydroxypyruvate
pdb|3DU0|A Chain A, E. Coli Dihydrodipicolinate Synthase With First Substrate,
Pyruvate, Bound In Active Site
pdb|3DU0|B Chain B, E. Coli Dihydrodipicolinate Synthase With First Substrate,
Pyruvate, Bound In Active Site
pdb|4EOU|A Chain A, Crystal Structure Of E. Coli Dihydrodipicolinate Synthase
With Pyruvate And Succinic Semi-Aldehyde Bound In Active
Site
pdb|4EOU|B Chain B, Crystal Structure Of E. Coli Dihydrodipicolinate Synthase
With Pyruvate And Succinic Semi-Aldehyde Bound In Active
Site
Length = 292
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 122 VVRSGRNVTVVAVEF--KFNDTGKLVCASHATFYNTP 156
+ +G N T A+ +FND+G + C + +YN P
Sbjct: 74 IAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRP 110
>pdb|2OJP|A Chain A, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase From E.Coli- Dhdps-L197y
pdb|2OJP|B Chain B, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase From E.Coli- Dhdps-L197y
Length = 292
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 122 VVRSGRNVTVVAVEF--KFNDTGKLVCASHATFYNTP 156
+ +G N T A+ +FND+G + C + +YN P
Sbjct: 74 IAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRP 110
>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|2OWB|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|3FC2|A Chain A, Plk1 In Complex With Bi6727
Length = 335
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 86 CARTVVAEDKEIFLGELGISYLSAAPHNAE-LIMEASVVRSGRNVTVVAVEFKFND 140
C A+ KE+F G++ L PH E + ME S+ RS + VV F D
Sbjct: 57 CFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED 112
>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With
Nms-P937
pdb|4A4L|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
5-(2-Amino-Pyrimidin-4-Yl)-1h-Pyrrole Inhibitor
pdb|4A4O|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
2-
(2-Amino-Pyrimidin-4-Yl)-1,5,6,
7-Tetrahydro-Pyrrolopyridin- 4-One Inhibitor
Length = 311
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 86 CARTVVAEDKEIFLGELGISYLSAAPHNAE-LIMEASVVRSGRNVTVVAVEFKFND 140
C A+ KE+F G++ L PH E + ME S+ RS + VV F D
Sbjct: 33 CFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED 88
>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|B Chain B, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 315
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 86 CARTVVAEDKEIFLGELGISYLSAAPHNAE-LIMEASVVRSGRNVTVVAVEFKFND 140
C A+ KE+F G++ L PH E + ME S+ RS + VV F D
Sbjct: 37 CFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED 92
>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536
Length = 294
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 86 CARTVVAEDKEIFLGELGISYLSAAPHNAE-LIMEASVVRSGRNVTVVAVEFKFND 140
C A+ KE+F G++ L PH E + ME S+ RS + VV F D
Sbjct: 31 CFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED 86
>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A
Benzolactam-Derived Inhibitor
Length = 333
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 86 CARTVVAEDKEIFLGELGISYLSAAPHNAE-LIMEASVVRSGRNVTVVAVEFKFND 140
C A+ KE+F G++ L PH E + ME S+ RS + VV F D
Sbjct: 55 CFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED 110
>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 311
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 86 CARTVVAEDKEIFLGELGISYLSAAPHNAE-LIMEASVVRSGRNVTVVAVEFKFND 140
C A+ KE+F G++ L PH E + ME S+ RS + VV F D
Sbjct: 33 CFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,866,743
Number of Sequences: 62578
Number of extensions: 120330
Number of successful extensions: 290
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 20
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)