Query 031399
Match_columns 160
No_of_seqs 144 out of 1329
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 13:33:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10293 acyl-CoA esterase; Pr 100.0 1.3E-26 2.8E-31 168.4 17.7 111 41-155 20-136 (136)
2 PRK10254 thioesterase; Provisi 100.0 2.2E-26 4.7E-31 167.3 18.2 111 41-155 20-136 (137)
3 PRK11688 hypothetical protein; 99.9 1.4E-24 3E-29 160.6 18.9 127 11-154 6-153 (154)
4 PLN02322 acyl-CoA thioesterase 99.9 2.6E-24 5.7E-29 158.8 18.5 112 41-155 12-134 (154)
5 TIGR00369 unchar_dom_1 unchara 99.9 2.7E-24 5.8E-29 151.8 16.5 105 48-154 7-117 (117)
6 COG2050 PaaI HGG motif-contain 99.9 6.7E-24 1.4E-28 154.7 17.1 110 48-158 25-140 (141)
7 KOG3328 HGG motif-containing t 99.9 2.2E-24 4.8E-29 155.9 14.1 118 41-160 22-145 (148)
8 TIGR02286 PaaD phenylacetic ac 99.9 2.3E-23 4.9E-28 146.5 17.3 104 48-155 5-114 (114)
9 cd03443 PaaI_thioesterase PaaI 99.8 4.6E-19 1E-23 122.9 16.8 104 48-153 3-112 (113)
10 TIGR02447 yiiD_Cterm thioester 99.8 2.1E-19 4.7E-24 130.7 14.7 110 41-156 8-138 (138)
11 PF03061 4HBT: Thioesterase su 99.7 2.4E-16 5.3E-21 102.5 11.7 79 67-146 1-79 (79)
12 PF14539 DUF4442: Domain of un 99.7 1.5E-15 3.2E-20 109.7 14.2 105 47-154 19-132 (132)
13 cd03442 BFIT_BACH Brown fat-in 99.7 7.9E-15 1.7E-19 102.9 14.9 100 55-156 4-114 (123)
14 COG1607 Acyl-CoA hydrolase [Li 99.6 8.9E-15 1.9E-19 108.0 13.6 96 59-156 17-120 (157)
15 cd00556 Thioesterase_II Thioes 99.6 3.6E-15 7.9E-20 101.1 10.8 85 67-153 14-98 (99)
16 PRK10694 acyl-CoA esterase; Pr 99.6 3E-14 6.4E-19 103.1 15.3 90 65-156 24-121 (133)
17 PRK04424 fatty acid biosynthes 99.4 1.9E-11 4E-16 93.1 15.9 98 50-154 76-181 (185)
18 cd00586 4HBT 4-hydroxybenzoyl- 99.3 7.3E-11 1.6E-15 79.8 13.6 90 65-155 13-109 (110)
19 cd03440 hot_dog The hotdog fol 99.2 2.1E-09 4.6E-14 68.7 14.1 87 65-152 13-99 (100)
20 PLN02647 acyl-CoA thioesterase 99.2 4.4E-10 9.6E-15 95.4 13.4 93 65-157 106-211 (437)
21 PLN02647 acyl-CoA thioesterase 99.1 2.1E-09 4.5E-14 91.3 13.8 90 65-156 303-402 (437)
22 PF09500 YiiD_Cterm: Putative 99.1 9.7E-09 2.1E-13 75.1 14.3 105 47-155 18-143 (144)
23 PRK10800 acyl-CoA thioesterase 99.1 2.5E-08 5.5E-13 71.1 15.6 92 65-157 15-113 (130)
24 KOG4781 Uncharacterized conser 99.0 1.3E-09 2.9E-14 84.3 8.1 87 55-143 123-215 (237)
25 cd03445 Thioesterase_II_repeat 99.0 9.5E-09 2.1E-13 70.0 10.8 80 66-153 14-93 (94)
26 TIGR02799 thio_ybgC tol-pal sy 98.9 1E-07 2.2E-12 67.2 14.9 96 60-157 6-111 (126)
27 cd03449 R_hydratase (R)-hydrat 98.9 9E-08 2E-12 67.4 12.9 82 66-153 44-127 (128)
28 PF13622 4HBT_3: Thioesterase- 98.9 3.5E-08 7.6E-13 77.7 11.8 82 67-156 9-90 (255)
29 TIGR00051 acyl-CoA thioester h 98.9 3.2E-07 6.9E-12 63.5 14.8 94 61-155 4-106 (117)
30 COG0824 FcbC Predicted thioest 98.8 3.6E-07 7.8E-12 66.3 14.3 91 65-157 18-115 (137)
31 COG5496 Predicted thioesterase 98.7 4.1E-07 8.8E-12 64.5 11.5 92 66-159 27-118 (130)
32 PF13279 4HBT_2: Thioesterase- 98.7 2.7E-06 5.9E-11 59.4 14.7 92 65-157 7-106 (121)
33 cd01288 FabZ FabZ is a 17kD be 98.5 2.1E-05 4.6E-10 55.6 15.5 85 68-154 43-130 (131)
34 PRK07531 bifunctional 3-hydrox 98.5 1E-05 2.3E-10 70.0 15.9 92 65-157 358-455 (495)
35 PRK00006 fabZ (3R)-hydroxymyri 98.5 3.4E-05 7.3E-10 56.1 16.0 87 67-155 57-145 (147)
36 TIGR00189 tesB acyl-CoA thioes 98.4 2.4E-06 5.2E-11 68.1 10.5 78 68-153 21-98 (271)
37 cd03455 SAV4209 SAV4209 is a S 98.4 9.3E-06 2E-10 57.3 12.0 78 68-152 44-122 (123)
38 cd03441 R_hydratase_like (R)-h 98.4 1.2E-05 2.6E-10 56.2 11.5 81 66-151 41-125 (127)
39 PRK10526 acyl-CoA thioesterase 98.4 5.2E-06 1.1E-10 67.2 10.7 99 49-155 12-111 (286)
40 PLN02868 acyl-CoA thioesterase 98.2 1.1E-05 2.5E-10 68.2 10.2 100 48-155 135-237 (413)
41 cd03447 FAS_MaoC FAS_MaoC, the 98.2 6.3E-05 1.4E-09 53.7 12.3 82 67-153 42-124 (126)
42 cd03451 FkbR2 FkbR2 is a Strep 98.2 2E-05 4.3E-10 56.9 9.8 85 67-156 53-144 (146)
43 cd03453 SAV4209_like SAV4209_l 98.2 6.2E-05 1.3E-09 53.4 12.0 79 67-152 44-126 (127)
44 cd03446 MaoC_like MoaC_like 98.2 3.5E-05 7.5E-10 55.3 10.1 82 68-153 51-139 (140)
45 cd03454 YdeM YdeM is a Bacillu 98.1 6.9E-05 1.5E-09 53.9 11.1 83 68-154 49-139 (140)
46 PRK13692 (3R)-hydroxyacyl-ACP 98.1 7.9E-05 1.7E-09 55.4 10.9 59 97-156 84-146 (159)
47 PRK13691 (3R)-hydroxyacyl-ACP 98.0 0.0003 6.5E-09 52.7 12.8 57 99-156 86-146 (166)
48 COG4109 Predicted transcriptio 98.0 0.00023 5E-09 58.9 12.7 86 65-154 345-430 (432)
49 TIGR01750 fabZ beta-hydroxyacy 98.0 0.0011 2.3E-08 47.7 15.0 50 102-153 90-139 (140)
50 KOG2763 Acyl-CoA thioesterase 98.0 4.6E-05 9.9E-10 63.1 8.5 72 65-137 212-283 (357)
51 cd03452 MaoC_C MaoC_C The C-t 98.0 0.00016 3.5E-09 52.5 10.5 83 67-155 50-139 (142)
52 cd03444 Thioesterase_II_repeat 97.9 0.00062 1.3E-08 46.9 12.1 83 69-152 16-102 (104)
53 PRK08190 bifunctional enoyl-Co 97.9 0.00039 8.5E-09 60.0 13.0 84 67-156 58-143 (466)
54 cd01289 FabA_like Domain of un 97.9 0.0037 8.1E-08 45.2 16.1 103 51-155 19-137 (138)
55 cd00493 FabA_FabZ FabA/Z, beta 97.8 0.0042 9.2E-08 43.5 15.2 52 98-151 77-128 (131)
56 PLN02370 acyl-ACP thioesterase 97.7 0.0035 7.6E-08 53.4 16.2 93 65-157 152-257 (419)
57 PRK13188 bifunctional UDP-3-O- 97.6 0.0064 1.4E-07 52.5 16.2 149 5-156 285-461 (464)
58 TIGR00189 tesB acyl-CoA thioes 97.5 0.0029 6.3E-08 50.4 12.1 84 68-152 181-268 (271)
59 PF07977 FabA: FabA-like domai 97.4 0.022 4.7E-07 40.9 14.5 49 99-149 86-138 (138)
60 PF13622 4HBT_3: Thioesterase- 97.4 0.0018 3.8E-08 50.9 9.3 79 74-154 174-255 (255)
61 cd03450 NodN NodN (nodulation 97.3 0.0073 1.6E-07 44.3 10.9 85 67-154 56-147 (149)
62 PRK13693 (3R)-hydroxyacyl-ACP 97.2 0.01 2.3E-07 43.1 11.3 81 66-153 53-140 (142)
63 PF01643 Acyl-ACP_TE: Acyl-ACP 97.1 0.043 9.2E-07 43.7 14.6 93 65-158 16-122 (261)
64 PRK10526 acyl-CoA thioesterase 97.1 0.017 3.7E-07 46.8 12.1 86 68-154 192-282 (286)
65 PF13452 MaoC_dehydrat_N: N-te 97.0 0.0039 8.5E-08 44.1 7.3 52 95-147 73-131 (132)
66 cd01287 FabA FabA, beta-hydrox 97.0 0.079 1.7E-06 39.0 15.0 84 68-153 50-145 (150)
67 PF01575 MaoC_dehydratas: MaoC 97.0 0.0052 1.1E-07 43.2 7.7 67 66-136 49-115 (122)
68 COG1946 TesB Acyl-CoA thioeste 97.0 0.0032 6.9E-08 50.9 7.0 99 49-155 12-111 (289)
69 COG2030 MaoC Acyl dehydratase 97.0 0.027 5.8E-07 41.7 11.5 84 69-156 69-156 (159)
70 COG0764 FabA 3-hydroxymyristoy 96.9 0.037 8.1E-07 40.6 11.5 56 100-157 90-146 (147)
71 KOG3016 Acyl-CoA thioesterase 96.8 0.018 3.9E-07 46.6 10.3 102 47-156 12-118 (294)
72 cd03448 HDE_HSD HDE_HSD The R 96.8 0.028 6.1E-07 39.8 10.1 73 67-148 44-116 (122)
73 TIGR02278 PaaN-DH phenylacetic 96.8 0.011 2.4E-07 53.3 9.4 81 68-154 574-661 (663)
74 COG1946 TesB Acyl-CoA thioeste 96.7 0.0093 2E-07 48.2 7.5 87 68-155 192-283 (289)
75 PLN02868 acyl-CoA thioesterase 96.5 0.021 4.6E-07 48.4 9.4 83 68-151 325-410 (413)
76 KOG2763 Acyl-CoA thioesterase 96.4 0.061 1.3E-06 44.9 10.8 92 65-156 21-126 (357)
77 PRK11563 bifunctional aldehyde 96.3 0.027 5.8E-07 50.9 9.1 81 68-154 586-673 (675)
78 PF03756 AfsA: A-factor biosyn 96.1 0.29 6.4E-06 34.7 13.3 83 69-153 42-131 (132)
79 TIGR01749 fabA beta-hydroxyacy 96.0 0.47 1E-05 35.6 14.6 47 102-150 107-157 (169)
80 PLN02864 enoyl-CoA hydratase 95.9 0.16 3.5E-06 41.7 11.1 78 67-153 227-304 (310)
81 PRK05174 3-hydroxydecanoyl-(ac 95.8 0.56 1.2E-05 35.3 14.7 49 100-150 108-160 (172)
82 PF02551 Acyl_CoA_thio: Acyl-C 95.8 0.095 2E-06 37.8 8.1 56 95-150 73-128 (131)
83 PLN02864 enoyl-CoA hydratase 95.0 0.27 5.8E-06 40.3 9.4 61 96-156 93-157 (310)
84 KOG3016 Acyl-CoA thioesterase 92.7 0.69 1.5E-05 37.6 7.5 81 67-148 207-291 (294)
85 PF14765 PS-DH: Polyketide syn 92.1 3 6.6E-05 32.9 10.7 77 77-154 206-287 (295)
86 COG3884 FatA Acyl-ACP thioeste 90.6 3.7 8.1E-05 32.5 9.3 61 95-157 54-114 (250)
87 PF01643 Acyl-ACP_TE: Acyl-ACP 89.9 3.7 8.1E-05 32.6 9.2 82 65-153 178-260 (261)
88 TIGR02813 omega_3_PfaA polyket 70.2 38 0.00083 35.8 9.8 55 100-155 2519-2573(2582)
89 COG3884 FatA Acyl-ACP thioeste 68.6 54 0.0012 26.1 8.4 59 65-129 165-223 (250)
90 PLN02370 acyl-ACP thioesterase 60.7 1.1E+02 0.0024 26.4 10.7 84 65-155 314-403 (419)
91 PF10648 Gmad2: Immunoglobulin 58.0 32 0.0007 22.8 4.8 44 103-151 2-49 (88)
92 PF11684 DUF3280: Protein of u 41.5 1.2E+02 0.0026 22.0 6.0 40 113-152 80-119 (140)
93 COG3777 Uncharacterized conser 40.3 76 0.0016 25.5 5.0 74 65-151 198-272 (273)
94 PF13313 DUF4082: Domain of un 34.8 1.9E+02 0.004 21.3 7.4 49 99-151 18-66 (149)
95 PF10989 DUF2808: Protein of u 33.2 1.8E+02 0.004 20.8 7.7 38 100-137 89-128 (146)
96 PF04775 Bile_Hydr_Trans: Acyl 32.2 1.8E+02 0.0039 20.4 5.9 41 101-144 6-46 (126)
97 PF11293 DUF3094: Protein of u 29.7 82 0.0018 19.1 2.9 22 8-29 2-23 (55)
98 smart00634 BID_1 Bacterial Ig- 28.4 93 0.002 20.2 3.4 23 126-149 16-38 (92)
99 TIGR03786 strep_pil_rpt strept 28.3 1.5E+02 0.0033 18.3 4.4 24 126-149 29-52 (64)
100 PF11141 DUF2914: Protein of u 28.1 1.5E+02 0.0032 18.4 4.1 35 116-151 30-64 (66)
101 PF07210 DUF1416: Protein of u 27.2 1.9E+02 0.0042 19.2 4.7 40 112-152 4-47 (85)
102 PF12988 DUF3872: Domain of un 26.7 66 0.0014 23.4 2.5 21 107-127 41-61 (137)
103 PF08670 MEKHLA: MEKHLA domain 26.3 1.3E+02 0.0027 22.1 4.0 30 119-148 108-139 (148)
104 PF08496 Peptidase_S49_N: Pept 25.5 55 0.0012 24.2 2.0 17 56-72 131-147 (155)
105 PF11355 DUF3157: Protein of u 24.3 3.4E+02 0.0073 21.0 7.0 51 102-153 100-153 (199)
106 TIGR00074 hypC_hupF hydrogenas 23.9 1.8E+02 0.0038 18.8 3.9 24 97-120 23-46 (76)
107 KOG1206 Peroxisomal multifunct 22.7 2.1E+02 0.0045 23.0 4.8 44 68-118 192-235 (272)
108 PF01835 A2M_N: MG2 domain; I 21.9 2.3E+02 0.0051 18.3 5.9 42 108-150 8-55 (99)
109 PF14765 PS-DH: Polyketide syn 20.2 4.2E+02 0.009 20.5 11.8 55 97-152 62-124 (295)
No 1
>PRK10293 acyl-CoA esterase; Provisional
Probab=99.95 E-value=1.3e-26 Score=168.37 Aligned_cols=111 Identities=19% Similarity=0.285 Sum_probs=101.7
Q ss_pred hhhhhhcceEEEEEeCCeEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCC
Q 031399 41 YSNILGRHIKVHKIQRGRLICHLS------NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNA 114 (160)
Q Consensus 41 ~~~~~~~gl~~~~~~~g~~~~~~~------n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~ 114 (160)
|.+++ |+++.++++|+++++|| |+.|++|||++++|+|.++++++.+..+.+...+|+++++||++|++.|
T Consensus 20 ~~~~L--Gi~i~~~~~g~~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel~infl~p~~~g- 96 (136)
T PRK10293 20 MVGLL--DIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREG- 96 (136)
T ss_pred HHHhc--CcEEEEEeCCEEEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEEEeEEecccCCc-
Confidence 55555 99999999999999999 9999999999999999999988877665567789999999999999965
Q ss_pred EEEEEEEEEEeCCcEEEEEEEEEECCCCCEEEEEEEEEEec
Q 031399 115 ELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFYNT 155 (160)
Q Consensus 115 ~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva~a~~~~~~~ 155 (160)
+|+++|++++.||++++++++++ |++|+++|.++++++++
T Consensus 97 ~l~a~a~vv~~Gr~~~~~~~~v~-d~~g~l~A~~~~t~~i~ 136 (136)
T PRK10293 97 RVRGVCKPLHLGSRHQVWQIEIF-DEKGRLCCSSRLTTAIL 136 (136)
T ss_pred eEEEEEEEEecCCCEEEEEEEEE-eCCCCEEEEEEEEEEEC
Confidence 89999999999999999999999 88999999999999874
No 2
>PRK10254 thioesterase; Provisional
Probab=99.95 E-value=2.2e-26 Score=167.29 Aligned_cols=111 Identities=16% Similarity=0.194 Sum_probs=102.5
Q ss_pred hhhhhhcceEEEEEeCCeEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCC
Q 031399 41 YSNILGRHIKVHKIQRGRLICHLS------NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNA 114 (160)
Q Consensus 41 ~~~~~~~gl~~~~~~~g~~~~~~~------n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~ 114 (160)
|.+++ |+++.++++|++++++| |+.|++|||++++|+|.++++++.+..+++...+|+++++||++|++. +
T Consensus 20 ~~~~L--Gi~i~ei~~g~~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp~~~-g 96 (137)
T PRK10254 20 MVAHL--GIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRPVSE-G 96 (137)
T ss_pred hHHhh--CcEEEEEeCCEEEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEeccCcC-C
Confidence 55665 99999999999999999 999999999999999999999888766667888999999999999995 4
Q ss_pred EEEEEEEEEEeCCcEEEEEEEEEECCCCCEEEEEEEEEEec
Q 031399 115 ELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFYNT 155 (160)
Q Consensus 115 ~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva~a~~~~~~~ 155 (160)
.|+++|++++.||++.+++++++ +++|+++|.++++..++
T Consensus 97 ~l~a~a~vi~~Gr~~~v~~~~v~-d~~g~l~a~~~~t~~i~ 136 (137)
T PRK10254 97 KVRGVCQPLHLGRQNQSWEIVVF-DEQGRRCCTCRLGTAVL 136 (137)
T ss_pred eEEEEEEEEecCcCEEEEEEEEE-cCCCCEEEEEEEEEEEe
Confidence 89999999999999999999999 88999999999999875
No 3
>PRK11688 hypothetical protein; Provisional
Probab=99.94 E-value=1.4e-24 Score=160.62 Aligned_cols=127 Identities=17% Similarity=0.248 Sum_probs=105.5
Q ss_pred ChHHHHHHHHHHHhhCCCCCCCCCCCCCcchhhhhhcceEEEEEeCCeEEEEEe------C--CCCcccHHHHHHHHHHH
Q 031399 11 DPEDVSKVIVFLKEVGASSSIPDDCCTNDSYSNILGRHIKVHKIQRGRLICHLS------N--FFGGIHGGAIAAFSERM 82 (160)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~g~~~~~~~------n--~~g~vHGG~~~~l~D~~ 82 (160)
++|..+++.+++... .+ |.+++ |+++.++++|.++++|+ | +.|.+|||++++|+|.+
T Consensus 6 ~~~~~~~~~~~~~~~------------~p-f~~~l--G~~~~~~~~g~~~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a 70 (154)
T PRK11688 6 QEEALKLVGEIFVYH------------MP-FNRLL--GLELERLEPDFVELSFKMQPELVGNIAQSILHGGVIASVLDVA 70 (154)
T ss_pred HHHHHHHHHHHHHhc------------CC-HHHHh--CcEEEEEeCCEEEEEeeCCHHHcCCCCcCeeeHHHHHHHHHHH
Confidence 345677777755322 12 55555 89999999999999999 3 57999999999999999
Q ss_pred HHHHHHhcccC-------------CceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCEEEEEE
Q 031399 83 AIACARTVVAE-------------DKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASH 149 (160)
Q Consensus 83 ~~~~~~~~~~~-------------~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva~a~ 149 (160)
+++++.+.... ...++|++++++|++|++ |+.|+++|+++|.||++++++++++ +++|+++|+++
T Consensus 71 ~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~-g~~l~a~a~v~~~g~r~~~~~~~i~-~~~g~lvA~a~ 148 (154)
T PRK11688 71 GGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVDYLRPGR-GERFTATSSVLRAGNKVAVARMELH-NEQGVHIASGT 148 (154)
T ss_pred HHHHHHhhcccccccccccccccccccceEEEEEEEeeccCC-CCeEEEEEEEEEccCCEEEEEEEEE-CCCCCEEEEEE
Confidence 99988764211 124579999999999997 9999999999999999999999999 78899999999
Q ss_pred EEEEe
Q 031399 150 ATFYN 154 (160)
Q Consensus 150 ~~~~~ 154 (160)
++|++
T Consensus 149 ~t~~v 153 (154)
T PRK11688 149 ATYLV 153 (154)
T ss_pred EEEEe
Confidence 99986
No 4
>PLN02322 acyl-CoA thioesterase
Probab=99.93 E-value=2.6e-24 Score=158.82 Aligned_cols=112 Identities=22% Similarity=0.247 Sum_probs=97.6
Q ss_pred hhhhhhcceEEEEEeCCeEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCC
Q 031399 41 YSNILGRHIKVHKIQRGRLICHLS------NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNA 114 (160)
Q Consensus 41 ~~~~~~~gl~~~~~~~g~~~~~~~------n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~ 114 (160)
|.+.+ |+++.++++|+++++++ |+.|++|||++++|+|.++++++.... .+..++|++++++|++|++.|+
T Consensus 12 f~~~L--Gi~l~ei~~G~~~~~m~v~~~~~N~~G~vHGGv~atLaDta~g~A~~~~~-~~~~~vTiel~infLrpa~~G~ 88 (154)
T PLN02322 12 PLHML--GFEFDELSPTRVTGRLPVSPMCCQPFKVLHGGVSALIAESLASLGAHMAS-GFKRVAGIQLSINHLKSADLGD 88 (154)
T ss_pred HHHHC--CCEEEEEECCEEEEEEECCHHHcCCCCCccHHHHHHHHHHHHHHHHhhcc-CCCceEEEEEEEEEeccCCCCC
Confidence 44444 99999999999999999 999999999999999999888765432 2346789999999999999888
Q ss_pred EEEEEEEEEEeCCcEEEEEEEEEEC----C-CCCEEEEEEEEEEec
Q 031399 115 ELIMEASVVRSGRNVTVVAVEFKFN----D-TGKLVCASHATFYNT 155 (160)
Q Consensus 115 ~v~~~a~v~~~gr~~~~~~~~i~~~----~-~g~lva~a~~~~~~~ 155 (160)
.|+++|++++.||++.+++++|++. + +|++++.+++|+++.
T Consensus 89 ~L~Aea~vv~~Gr~~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~~ 134 (154)
T PLN02322 89 LVFAEATPVSTGKTIQVWEVKLWKTTDKDKANKILISSSRVTLICN 134 (154)
T ss_pred EEEEEEEEEecCCCEEEEEEEEEECCCCcccCCeEEEEEEEEEEEc
Confidence 9999999999999999999999952 2 379999999999664
No 5
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=99.93 E-value=2.7e-24 Score=151.78 Aligned_cols=105 Identities=25% Similarity=0.340 Sum_probs=97.3
Q ss_pred ceEEEEEeCCeEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEE
Q 031399 48 HIKVHKIQRGRLICHLS------NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEAS 121 (160)
Q Consensus 48 gl~~~~~~~g~~~~~~~------n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~ 121 (160)
|+++.++++|+++++++ |+.|++|||++++++|.++++++....+.+...+|++++++|++|++.| +|+++++
T Consensus 7 g~~~~~~~~g~~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g-~l~a~a~ 85 (117)
T TIGR00369 7 GIEIEELGDGFLEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREG-KVRAIAQ 85 (117)
T ss_pred CeEEEEecCCEEEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCC-EEEEEEE
Confidence 89999999999999999 8999999999999999999887766555577889999999999999987 9999999
Q ss_pred EEEeCCcEEEEEEEEEECCCCCEEEEEEEEEEe
Q 031399 122 VVRSGRNVTVVAVEFKFNDTGKLVCASHATFYN 154 (160)
Q Consensus 122 v~~~gr~~~~~~~~i~~~~~g~lva~a~~~~~~ 154 (160)
+++.||++.+++++++ +++|++||+++++|++
T Consensus 86 v~~~gr~~~~~~~~i~-~~~g~~va~~~~t~~~ 117 (117)
T TIGR00369 86 VVHLGRQTGVAEIEIV-DEQGRLCALSRGTTAV 117 (117)
T ss_pred EEecCceEEEEEEEEE-CCCCCEEEEEEEEEcC
Confidence 9999999999999999 8899999999999974
No 6
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=6.7e-24 Score=154.66 Aligned_cols=110 Identities=29% Similarity=0.386 Sum_probs=102.0
Q ss_pred ceEEEEEeCCeEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEE
Q 031399 48 HIKVHKIQRGRLICHLS------NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEAS 121 (160)
Q Consensus 48 gl~~~~~~~g~~~~~~~------n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~ 121 (160)
|+++..+++|+++++++ |+.|++|||++++++|.++++++....+.....+|+++|+||+||++.|+ ++++|+
T Consensus 25 g~~~~~~~~g~~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~~~g~-v~a~a~ 103 (141)
T COG2050 25 GIEIEEIEEGEAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPVKEGD-VTAEAR 103 (141)
T ss_pred CcEEEEEecceEEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCCCCCe-EEEEEE
Confidence 78999999999999999 88999999999999999999999988766666789999999999999876 999999
Q ss_pred EEEeCCcEEEEEEEEEECCCCCEEEEEEEEEEecccC
Q 031399 122 VVRSGRNVTVVAVEFKFNDTGKLVCASHATFYNTPIA 158 (160)
Q Consensus 122 v~~~gr~~~~~~~~i~~~~~g~lva~a~~~~~~~~~~ 158 (160)
+++.|+++.++++++++++.++++|++++++++.+..
T Consensus 104 v~~~G~~~~v~~i~v~~~~~~~lva~~~~t~~v~~~~ 140 (141)
T COG2050 104 VLHLGRRVAVVEIEVKNDEGGRLVAKGTGTYAVLRKR 140 (141)
T ss_pred EEeeCCEEEEEEEEEEECCCCeEEEEEEEEEEEecCC
Confidence 9999999999999999667779999999999998764
No 7
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=99.92 E-value=2.2e-24 Score=155.89 Aligned_cols=118 Identities=33% Similarity=0.516 Sum_probs=107.5
Q ss_pred hhhhhhcceEEEEEeCCeEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCC
Q 031399 41 YSNILGRHIKVHKIQRGRLICHLS------NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNA 114 (160)
Q Consensus 41 ~~~~~~~gl~~~~~~~g~~~~~~~------n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~ 114 (160)
|+..+ .++++...+||++.|+|+ |+.+++|||++|+|+|.++++++.... ..++.++++||++|++|+++|+
T Consensus 22 Fd~~~-~~i~~~~~~~Grv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~~-~~~~gvsvdLsvsyL~~AklGe 99 (148)
T KOG3328|consen 22 FDRVL-NNIRIVSAEPGRVSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMTS-GFKPGVSVDLSVSYLSSAKLGE 99 (148)
T ss_pred hhhhc-CceEEeeccCceEEEEEEeCHHHcCccccccccchhhHHHHHhhHHHHhcc-CCCCceEEEEEhhhccccCCCC
Confidence 55555 779999999999999999 999999999999999999998765543 3678899999999999999999
Q ss_pred EEEEEEEEEEeCCcEEEEEEEEEECCCCCEEEEEEEEEEecccCCC
Q 031399 115 ELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFYNTPIAKL 160 (160)
Q Consensus 115 ~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva~a~~~~~~~~~~~~ 160 (160)
+|+++++++|.|+++.+++|++|.+.+|+++|.++++++.-|.+++
T Consensus 100 ~l~i~a~~vr~Gk~la~t~v~l~~K~t~kiia~grhtk~~~~~~~~ 145 (148)
T KOG3328|consen 100 ELEIEATVVRVGKTLAFTDVELRRKSTGKIIAKGRHTKYFRPASKL 145 (148)
T ss_pred eEEEEEEEeecCceEEEEEEEEEEcCCCeEEEecceEEEeecCCCC
Confidence 9999999999999999999999988899999999999999887754
No 8
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=99.92 E-value=2.3e-23 Score=146.55 Aligned_cols=104 Identities=20% Similarity=0.239 Sum_probs=95.1
Q ss_pred ceEEEEEeCCeEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEE
Q 031399 48 HIKVHKIQRGRLICHLS------NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEAS 121 (160)
Q Consensus 48 gl~~~~~~~g~~~~~~~------n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~ 121 (160)
|+++.++++|+++++++ |+.|++|||++++++|.+++.++... +...+|++++++|++|++.|+.|+++++
T Consensus 5 g~~i~~~~~g~~~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~~---~~~~~t~~~~i~f~rp~~~G~~l~~~a~ 81 (114)
T TIGR02286 5 GIDILELGPGFARVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNSY---GDAAVAAQCTIDFLRPGRAGERLEAEAV 81 (114)
T ss_pred CeEEEEecCCEEEEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcCC---CCceEEEEEEEEEecCCCCCCEEEEEEE
Confidence 89999999999999999 89999999999999999987766433 3446799999999999999999999999
Q ss_pred EEEeCCcEEEEEEEEEECCCCCEEEEEEEEEEec
Q 031399 122 VVRSGRNVTVVAVEFKFNDTGKLVCASHATFYNT 155 (160)
Q Consensus 122 v~~~gr~~~~~~~~i~~~~~g~lva~a~~~~~~~ 155 (160)
+++.|+++.+++++++ +++|+++|+++++|+++
T Consensus 82 v~~~g~~~~~~~~~i~-~~~~~~va~~~~t~~~~ 114 (114)
T TIGR02286 82 EVSRGGRTGTYDVEVV-NQEGELVALFRGTSRRL 114 (114)
T ss_pred EEEeCCcEEEEEEEEE-cCCCCEEEEEEEEEEEC
Confidence 9999999999999999 78999999999999874
No 9
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.84 E-value=4.6e-19 Score=122.92 Aligned_cols=104 Identities=33% Similarity=0.489 Sum_probs=95.2
Q ss_pred ceEEEEEeCCeEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEE
Q 031399 48 HIKVHKIQRGRLICHLS------NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEAS 121 (160)
Q Consensus 48 gl~~~~~~~g~~~~~~~------n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~ 121 (160)
|+.+...+++.++++++ |+.|.+|||++++++|.+++..+....+++...++++++++|++|++. ++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~-~~v~~~~~ 81 (113)
T cd03443 3 GIRVVEVGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARG-GDLTARAR 81 (113)
T ss_pred cEEEEEecCCeEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCC-CeEEEEEE
Confidence 67888899999999988 889999999999999999998887765456778899999999999999 89999999
Q ss_pred EEEeCCcEEEEEEEEEECCCCCEEEEEEEEEE
Q 031399 122 VVRSGRNVTVVAVEFKFNDTGKLVCASHATFY 153 (160)
Q Consensus 122 v~~~gr~~~~~~~~i~~~~~g~lva~a~~~~~ 153 (160)
+.+.|++...++++++ +++|+++|+++++++
T Consensus 82 v~~~g~~~~~~~~~~~-~~~~~~~a~a~~~~~ 112 (113)
T cd03443 82 VVKLGRRLAVVEVEVT-DEDGKLVATARGTFA 112 (113)
T ss_pred EEecCceEEEEEEEEE-CCCCCEEEEEEEEEe
Confidence 9999999999999999 667999999999986
No 10
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=99.83 E-value=2.1e-19 Score=130.69 Aligned_cols=110 Identities=18% Similarity=0.317 Sum_probs=90.2
Q ss_pred hhhhhhcceEEEEEeCCeEEEEEe-----CCCCcccHHHHHHHHHHHHHHHHHh---cccCCceeEEEEEEEEEeecCCC
Q 031399 41 YSNILGRHIKVHKIQRGRLICHLS-----NFFGGIHGGAIAAFSERMAIACART---VVAEDKEIFLGELGISYLSAAPH 112 (160)
Q Consensus 41 ~~~~~~~gl~~~~~~~g~~~~~~~-----n~~g~vHGG~~~~l~D~~~~~~~~~---~~~~~~~~vT~~l~i~fl~p~~~ 112 (160)
|.+.+ |+++.++++|++++++| |+.|++|||++++|+|.+++.++.. ....+..++|.+++|+|++|++
T Consensus 8 ~~~~l--Gi~v~e~~~g~~~v~~pl~~n~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl~P~~- 84 (138)
T TIGR02447 8 LSEAM--GIAVSSYTGGELRLSAPLAANINHHGTMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADSHIRYLAPVT- 84 (138)
T ss_pred HHHHc--CCEEEEeeCCEEEEEeECCCCcCCCCceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeeeEEcCCcC-
Confidence 44444 99999999999999999 8999999999999999775543422 2222357889999999999998
Q ss_pred CCEEEEEEEE-------------EEeCCcEEEEEEEEEECCCCCEEEEEEEEEEecc
Q 031399 113 NAELIMEASV-------------VRSGRNVTVVAVEFKFNDTGKLVCASHATFYNTP 156 (160)
Q Consensus 113 g~~v~~~a~v-------------~~~gr~~~~~~~~i~~~~~g~lva~a~~~~~~~~ 156 (160)
+ .+.+++++ .+.||+.++++++|+ ++|+++|+++++|++++
T Consensus 85 ~-~~~a~~~~~~~~~~~~~~~~l~~~gr~~~~~~~~v~--~~~~lvA~~~g~~~~~~ 138 (138)
T TIGR02447 85 G-DPVANCEAPDLESWEAFLATLQRGGKARVKLEAQIS--SDGKLAATFSGEYVALP 138 (138)
T ss_pred C-CeEEEEEcCCHHHHHHHHHHHHhCCceEEEEEEEEE--ECCEEEEEEEEEEEEeC
Confidence 4 47777777 788999999999998 46799999999998764
No 11
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=99.71 E-value=2.4e-16 Score=102.53 Aligned_cols=79 Identities=30% Similarity=0.437 Sum_probs=71.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCEEE
Q 031399 67 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVC 146 (160)
Q Consensus 67 ~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva 146 (160)
+|++|||.+++|+|.++..++......+...++++++++|++|++.|++|++++++.+.|+++++++++++ ++++++||
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~~~v~-~~~~~~~~ 79 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVEVEVY-SEDGRLCA 79 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEEEEEE-ETTSCEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEEEEEE-ECCCcEEC
Confidence 58999999999999999998888765456788999999999999999999999999999999999999999 77888776
No 12
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=99.69 E-value=1.5e-15 Score=109.71 Aligned_cols=105 Identities=22% Similarity=0.393 Sum_probs=82.4
Q ss_pred cceEEEEEeCCeEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEE
Q 031399 47 RHIKVHKIQRGRLICHLS------NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEA 120 (160)
Q Consensus 47 ~gl~~~~~~~g~~~~~~~------n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a 120 (160)
.|+++.+++++++++++| |+.|++|||++++++|.++++.+....+.+..++..+++++|+||++ +.|++++
T Consensus 19 ~g~~i~~~~~~~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~~~~~~~k~~~i~f~kpa~--g~v~a~~ 96 (132)
T PF14539_consen 19 AGIRIEEVDPGRVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGDKYRVWDKSAEIDFLKPAR--GDVTATA 96 (132)
T ss_dssp CT-EEEEEETTEEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-TTEEEEEEEEEEEE-S-----S-EEEEE
T ss_pred ceeEEEEEcCCEEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHhCCCcEEEEEEeeEEEEEeccC--CcEEEEE
Confidence 589999999999999999 89999999999999999999988888777777888999999999998 4899999
Q ss_pred EEEEe---CCcEEEEEEEEEECCCCCEEEEEEEEEEe
Q 031399 121 SVVRS---GRNVTVVAVEFKFNDTGKLVCASHATFYN 154 (160)
Q Consensus 121 ~v~~~---gr~~~~~~~~i~~~~~g~lva~a~~~~~~ 154 (160)
++... .+....++++++ |++|++||+++.++++
T Consensus 97 ~~~~e~~~~~~~~~~~v~i~-D~~G~~Va~~~~t~~V 132 (132)
T PF14539_consen 97 ELTEEQIGERGELTVPVEIT-DADGEVVAEATITWYV 132 (132)
T ss_dssp E-TCCHCCHEEEEEEEEEEE-ETTC-EEEEEEEEEEE
T ss_pred EcCHHHhCCCcEEEEEEEEE-ECCCCEEEEEEEEEEC
Confidence 88543 356677899998 8999999999999875
No 13
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.66 E-value=7.9e-15 Score=102.87 Aligned_cols=100 Identities=23% Similarity=0.287 Sum_probs=83.2
Q ss_pred eCCeEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEE-EEEEeecCCCCCEEEEEEEEEEeCC
Q 031399 55 QRGRLICHLS------NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGEL-GISYLSAAPHNAELIMEASVVRSGR 127 (160)
Q Consensus 55 ~~g~~~~~~~------n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l-~i~fl~p~~~g~~v~~~a~v~~~gr 127 (160)
++++++++++ |+.|.+|||.+++++|.+++.++.... +...++..+ +++|++|++.|+.|.+++++.+.|+
T Consensus 4 ~~~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~--~~~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~g~ 81 (123)
T cd03442 4 EDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHA--GGRVVTASVDRIDFLKPVRVGDVVELSARVVYTGR 81 (123)
T ss_pred CccceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHh--CCcEEEEEECceEEcCccccCcEEEEEEEEEEecC
Confidence 4566666666 899999999999999999887765443 234556677 7999999999999999999999999
Q ss_pred cEEEEEEEEEECC----CCCEEEEEEEEEEecc
Q 031399 128 NVTVVAVEFKFND----TGKLVCASHATFYNTP 156 (160)
Q Consensus 128 ~~~~~~~~i~~~~----~g~lva~a~~~~~~~~ 156 (160)
+++.+++++++++ ++++++++..++..+.
T Consensus 82 ~~~~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~ 114 (123)
T cd03442 82 TSMEVGVEVEAEDPLTGERRLVTSAYFTFVALD 114 (123)
T ss_pred CeEEEEEEEEEecCCCCcEEEEEEEEEEEEEEC
Confidence 9999999999543 3479999999998874
No 14
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=99.64 E-value=8.9e-15 Score=108.02 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=79.3
Q ss_pred EEEEEe---CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEE-EEEeecCCCCCEEEEEEEEEEeCCcEEEEEE
Q 031399 59 LICHLS---NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELG-ISYLSAAPHNAELIMEASVVRSGRNVTVVAV 134 (160)
Q Consensus 59 ~~~~~~---n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~-i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~ 134 (160)
..+.|| |+.|.+|||.+++++|.++++++.... +..+||+.++ ++|++|+++|+.|.+.+++++.||+++.+.+
T Consensus 17 ~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a--~~~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~GrTSm~V~V 94 (157)
T COG1607 17 RTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHA--GGRVVTASVDSVDFKKPVRVGDIVCLYARVVYTGRTSMEVGV 94 (157)
T ss_pred EEEecCCccCcccccccHHHHHHHHHHHHHHHHHHh--CCeEEEEEeceEEEccccccCcEEEEEEEEeecCcccEEEEE
Confidence 344466 999999999999999999999988775 4578888665 9999999999999999999999999999999
Q ss_pred EEEECC--CC--CEEEEEEEEEEecc
Q 031399 135 EFKFND--TG--KLVCASHATFYNTP 156 (160)
Q Consensus 135 ~i~~~~--~g--~lva~a~~~~~~~~ 156 (160)
++|.++ ++ +.++.+..+|+-+.
T Consensus 95 ev~~~~~~~~~~~~~t~~~ft~VAvd 120 (157)
T COG1607 95 EVWAEDIRSGERRLATSAYFTFVAVD 120 (157)
T ss_pred EEEEecccCCcceEeeeEEEEEEEEC
Confidence 999652 22 35566666666554
No 15
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.64 E-value=3.6e-15 Score=101.14 Aligned_cols=85 Identities=20% Similarity=0.224 Sum_probs=76.3
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCEEE
Q 031399 67 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVC 146 (160)
Q Consensus 67 ~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva 146 (160)
.+.+|||++++++|.+++.++....+ ....+|++++++|++|++.++++++++++++.|++..+.+++++ +++|+++|
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~-~~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~-~~~G~lva 91 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHG-ASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAY-QRDGKLVA 91 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccC-CCCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEE-CCCCcEEE
Confidence 68999999999999998887765433 34567999999999999998999999999999999999999999 77899999
Q ss_pred EEEEEEE
Q 031399 147 ASHATFY 153 (160)
Q Consensus 147 ~a~~~~~ 153 (160)
+++.+|.
T Consensus 92 ~~~~~~~ 98 (99)
T cd00556 92 SATQSFL 98 (99)
T ss_pred EEEEeEc
Confidence 9999885
No 16
>PRK10694 acyl-CoA esterase; Provisional
Probab=99.63 E-value=3e-14 Score=103.10 Aligned_cols=90 Identities=16% Similarity=0.223 Sum_probs=76.7
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEE-EEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECC---
Q 031399 65 NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGEL-GISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFND--- 140 (160)
Q Consensus 65 n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l-~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~--- 140 (160)
|+.|.+|||.++.++|+++++++.... +..++|+.+ .++|++|+++|+.|++++++++.|++++.++++++.+.
T Consensus 24 N~~g~lfGG~ll~~~D~~a~i~a~~~~--~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~g~sS~~v~v~v~~~~~~~ 101 (133)
T PRK10694 24 NANGDIFGGWLMSQMDIGGAILAKEIA--HGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKTGTTSISINIEVWVKKVAS 101 (133)
T ss_pred CCCCcEeHHHHHHHHHHHHHHHHHHHc--CCceEEEEECceEECCCcccCcEEEEEEEEEEccCceEEEEEEEEEeeccc
Confidence 999999999999999999998887654 356788988 67999999999999999999999999999999998521
Q ss_pred --CC--CEEEEEEEEEEecc
Q 031399 141 --TG--KLVCASHATFYNTP 156 (160)
Q Consensus 141 --~g--~lva~a~~~~~~~~ 156 (160)
.| ++++++..+|..++
T Consensus 102 ~~~g~~~~~~~~~~tfVavd 121 (133)
T PRK10694 102 EPIGQRYKATEALFTYVAVD 121 (133)
T ss_pred CCCCcEEEEEEEEEEEEEEC
Confidence 12 35778888887764
No 17
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=99.42 E-value=1.9e-11 Score=93.08 Aligned_cols=98 Identities=20% Similarity=0.265 Sum_probs=81.2
Q ss_pred EEEEEeCC-eEEEEEe-------CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEE
Q 031399 50 KVHKIQRG-RLICHLS-------NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEAS 121 (160)
Q Consensus 50 ~~~~~~~g-~~~~~~~-------n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~ 121 (160)
++.++++| .+++.+. |..+++|||++++++|.++..+ . .+...++...+++|++|+.+|+.|+++++
T Consensus 76 ~i~eie~g~~a~~~k~Vt~ne~fn~~~i~hG~f~~aqa~~la~~~---~--~~~~~~~~i~~irF~kPV~pGD~L~~ea~ 150 (185)
T PRK04424 76 ELIDLELGRSAISILEITEEMVFSKTGIARGHHLFAQANSLAVAV---I--DAELALTGVANIRFKRPVKLGERVVAKAE 150 (185)
T ss_pred eEEEecCCcEEEEEEecChhhccCCCCeecHHHHHHHHHHHHHHh---c--CCcEEEEEeeeEEEccCCCCCCEEEEEEE
Confidence 46778898 5666655 6678999999999999864332 1 24456778889999999999999999999
Q ss_pred EEEeCCcEEEEEEEEEECCCCCEEEEEEEEEEe
Q 031399 122 VVRSGRNVTVVAVEFKFNDTGKLVCASHATFYN 154 (160)
Q Consensus 122 v~~~gr~~~~~~~~i~~~~~g~lva~a~~~~~~ 154 (160)
+++.+++...++++++ .+|+++++|..+++.
T Consensus 151 v~~~~~~~~~v~~~~~--v~g~~V~ege~~~~~ 181 (185)
T PRK04424 151 VVRKKGNKYIVEVKSY--VGDELVFRGKFIMYR 181 (185)
T ss_pred EEEccCCEEEEEEEEE--ECCEEEEEEEEEEEE
Confidence 9999999999999998 578999999999876
No 18
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.34 E-value=7.3e-11 Score=79.82 Aligned_cols=90 Identities=19% Similarity=0.271 Sum_probs=78.5
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcc-------cCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEE
Q 031399 65 NFFGGIHGGAIAAFSERMAIACARTVV-------AEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFK 137 (160)
Q Consensus 65 n~~g~vHGG~~~~l~D~~~~~~~~~~~-------~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~ 137 (160)
|+.|.+|+|.+..++|.+....+.... ..+...++.+.+++|++|++.|+.|++++++.+.+++....+++++
T Consensus 13 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 92 (110)
T cd00586 13 DAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRLGRKSFTFEQEIF 92 (110)
T ss_pred CCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEEEEEecCcEEEEEEEEEE
Confidence 899999999999999999887665432 2244567889999999999999999999999999999999999998
Q ss_pred ECCCCCEEEEEEEEEEec
Q 031399 138 FNDTGKLVCASHATFYNT 155 (160)
Q Consensus 138 ~~~~g~lva~a~~~~~~~ 155 (160)
+++|+++|++...+..+
T Consensus 93 -~~~g~~~a~~~~~~~~~ 109 (110)
T cd00586 93 -REDGELLATAETVLVCV 109 (110)
T ss_pred -CCCCeEEEEEEEEEEEe
Confidence 56899999999988764
No 19
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=99.20 E-value=2.1e-09 Score=68.69 Aligned_cols=87 Identities=33% Similarity=0.442 Sum_probs=75.4
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCE
Q 031399 65 NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKL 144 (160)
Q Consensus 65 n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~l 144 (160)
+..+.+|||.+..++|.+....+..........+..+++++|.+|++.|+.|.++.++.+.+++...+++.++ +++|++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 91 (100)
T cd03440 13 DGGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGRSSVTVEVEVR-NEDGKL 91 (100)
T ss_pred CcCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEEEEEeccccEEEEEEEEE-CCCCCE
Confidence 6789999999999999988877665433345667889999999999999999999999999999999999998 667999
Q ss_pred EEEEEEEE
Q 031399 145 VCASHATF 152 (160)
Q Consensus 145 va~a~~~~ 152 (160)
++.+..++
T Consensus 92 ~~~~~~~~ 99 (100)
T cd03440 92 VATATATF 99 (100)
T ss_pred EEEEEEEe
Confidence 99987654
No 20
>PLN02647 acyl-CoA thioesterase
Probab=99.19 E-value=4.4e-10 Score=95.38 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=78.0
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcccCC------ceeEEEEEE-EEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEE
Q 031399 65 NFFGGIHGGAIAAFSERMAIACARTVVAED------KEIFLGELG-ISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFK 137 (160)
Q Consensus 65 n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~------~~~vT~~l~-i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~ 137 (160)
|+.|.+|||.++.++|.++++++..+...+ ..+||+.++ |+|++|+++|+.|.+.|+|...|++++.+.++++
T Consensus 106 N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~~~~~~p~~vVTAsVD~i~F~~Pi~~g~~v~l~g~Vt~vGrSSMEV~v~V~ 185 (437)
T PLN02647 106 NPWNEVRIGKLLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVDKIVLKKPIRVDVDLKIVGAVTWVGRSSMEIQLEVI 185 (437)
T ss_pred CCCCcEeHhHHHHHHHHHHHHHHHHHhCCCcccCCcceEEEEEECcEEEcCCCcCCcEEEEEEEEEEecCCeEEEEEEEE
Confidence 999999999999999999999988775321 157888665 9999999999999999999999999999999999
Q ss_pred ECC------CCCEEEEEEEEEEeccc
Q 031399 138 FND------TGKLVCASHATFYNTPI 157 (160)
Q Consensus 138 ~~~------~g~lva~a~~~~~~~~~ 157 (160)
.+. +..++++|..+|+.+..
T Consensus 186 ~~~~~~~~~~~~~~~~a~FtfVA~D~ 211 (437)
T PLN02647 186 QPTKDESNTSDSVALTANFTFVARDS 211 (437)
T ss_pred EccccCCCCcEEEEEEEEEEEEEEcC
Confidence 542 22467888888877653
No 21
>PLN02647 acyl-CoA thioesterase
Probab=99.11 E-value=2.1e-09 Score=91.33 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=71.0
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEE-EEEeecCCCCCEEEEEEEEEEeCCc-----EEEEEEEEEE
Q 031399 65 NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELG-ISYLSAAPHNAELIMEASVVRSGRN-----VTVVAVEFKF 138 (160)
Q Consensus 65 n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~-i~fl~p~~~g~~v~~~a~v~~~gr~-----~~~~~~~i~~ 138 (160)
|.+|.+|||.++.++|+++++++..+. +..++|+.++ ++|++|+++|+.|.++|.|+..|.+ .+.+++.++.
T Consensus 303 N~~g~iFGG~LM~~~De~A~i~A~r~a--~~~~vt~svd~v~F~~PV~vGdil~l~A~V~yt~~~s~g~~~i~veV~v~v 380 (437)
T PLN02647 303 NIHGRIFGGFLMRRAFELAFSTAYAFA--GLRPYFLEVDHVDFLRPVDVGDFLRFKSCVLYTELENSEQPLINVEVVAHV 380 (437)
T ss_pred CCCCcEeHHHHHHHHHHHHHHHHHHHc--CCceEEEEecceEecCccccCcEEEEEEEEEEEeEEecCceEEEEEEEEEE
Confidence 999999999999999999999888775 3456777655 9999999999999999999877654 4555555442
Q ss_pred -C---CCCCEEEEEEEEEEecc
Q 031399 139 -N---DTGKLVCASHATFYNTP 156 (160)
Q Consensus 139 -~---~~g~lva~a~~~~~~~~ 156 (160)
+ .+++++.++..||...+
T Consensus 381 ~~~~~~~~~~~n~~~fTfva~d 402 (437)
T PLN02647 381 TRPELRSSEVSNTFYFTFTVRP 402 (437)
T ss_pred EcCCCCcceEEEEEEEEEEEec
Confidence 2 24567888888887765
No 22
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=99.08 E-value=9.7e-09 Score=75.13 Aligned_cols=105 Identities=20% Similarity=0.308 Sum_probs=72.6
Q ss_pred cceEEEEEeCCeEEEEEe-----CCCCcccHHHHHHHHHHHHHHHHHhcc---cCCceeEEEEEEEEEeecCCCCCEEEE
Q 031399 47 RHIKVHKIQRGRLICHLS-----NFFGGIHGGAIAAFSERMAIACARTVV---AEDKEIFLGELGISYLSAAPHNAELIM 118 (160)
Q Consensus 47 ~gl~~~~~~~g~~~~~~~-----n~~g~vHGG~~~~l~D~~~~~~~~~~~---~~~~~~vT~~l~i~fl~p~~~g~~v~~ 118 (160)
+|+++...++++++++.| |+.|+++||-+++++=-++...+.-.. +....+|-.+.+|+|++|+. +++++
T Consensus 18 Mgi~v~~~~~~~l~~~APL~pN~N~~~T~FgGSl~slatLaGW~lv~l~l~e~~~~~~IVi~~~~i~Y~~Pv~--~d~~A 95 (144)
T PF09500_consen 18 MGIKVTSYTGQRLELSAPLAPNINHHGTMFGGSLYSLATLAGWGLVWLQLKEAGLNGDIVIADSNIRYLKPVT--GDFTA 95 (144)
T ss_dssp TT-EEEEEETTEEEEE--SGGGB-TTSSB-HHHHHHHHHHHHHHHHHHHHHHHT---EEEEEEEEEEE-S-----S--EE
T ss_pred cCcEEEEEcCCEEEEeccCCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeCceEEcCCCC--CCcEE
Confidence 489999999999999999 889999999999998775544333221 22356788899999999998 46888
Q ss_pred EEEEE-------------EeCCcEEEEEEEEEECCCCCEEEEEEEEEEec
Q 031399 119 EASVV-------------RSGRNVTVVAVEFKFNDTGKLVCASHATFYNT 155 (160)
Q Consensus 119 ~a~v~-------------~~gr~~~~~~~~i~~~~~g~lva~a~~~~~~~ 155 (160)
++++- +.||-.+.++++++ .+|+++++.++.|++.
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~grari~l~~~i~--~~~~~~a~f~G~yv~l 143 (144)
T PF09500_consen 96 RCSLPEPEDWERFLQTLARGGRARITLEVEIY--SGGELAAEFTGRYVAL 143 (144)
T ss_dssp EEE-------S---GGGGCTS-EEEEEEEEEE--ETTEEEEEEEEEEEEE
T ss_pred EEeccccchhHHHHHHHHcCCcEEEEEEEEEE--ECCEEEEEEEEEEEEE
Confidence 88875 66888888999998 5788999999999875
No 23
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=99.06 E-value=2.5e-08 Score=71.07 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=79.0
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcc-------cCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEE
Q 031399 65 NFFGGIHGGAIAAFSERMAIACARTVV-------AEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFK 137 (160)
Q Consensus 65 n~~g~vHGG~~~~l~D~~~~~~~~~~~-------~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~ 137 (160)
++.|.+|-+.+..+++.+......... ..+...+.++.+++|++|+..|++|+++..+.+.|++.+.+..+++
T Consensus 15 D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~~~s~~~~~~i~ 94 (130)
T PRK10800 15 DAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDDMLEVQSEITSMRGTSLTFTQRIV 94 (130)
T ss_pred CCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCCEEEEEEEEEeeCcEEEEEEEEEE
Confidence 899999999999999998765543332 1245667889999999999999999999999999999999999998
Q ss_pred ECCCCCEEEEEEEEEEeccc
Q 031399 138 FNDTGKLVCASHATFYNTPI 157 (160)
Q Consensus 138 ~~~~g~lva~a~~~~~~~~~ 157 (160)
+++|++++++..+++++..
T Consensus 95 -~~~g~~~a~~~~~~v~~d~ 113 (130)
T PRK10800 95 -NAEGTLLNEAEVLIVCVDP 113 (130)
T ss_pred -cCCCeEEEEEEEEEEEEEC
Confidence 6789999999999988864
No 24
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=1.3e-09 Score=84.33 Aligned_cols=87 Identities=21% Similarity=0.326 Sum_probs=72.0
Q ss_pred eCCeEEEEEe------CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCc
Q 031399 55 QRGRLICHLS------NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRN 128 (160)
Q Consensus 55 ~~g~~~~~~~------n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~ 128 (160)
+.++.++-+. ++.|.+|||++++++|++..+|.+...+ .+..+|++++++|.+|+++...+.+++...+..++
T Consensus 123 s~~e~v~i~h~G~~L~gy~~~iHgG~IATllde~L~~c~fl~~p-nk~~vTanLsisy~~pip~~~f~vi~t~~~~~~Gr 201 (237)
T KOG4781|consen 123 SHREMVVIFHLGKDLTGYPGLVHGGAIATLLDEALAMCAFLALP-NKIGVTANLSISYKRPIPTNHFVVIRTQLDKVEGR 201 (237)
T ss_pred CCCeEEEEEeccccccCCCCccchHHHHHHHHHHHHHhhcccCC-chhheeeecccccCCCcccceEEEEecchhhhcCc
Confidence 3445555544 7889999999999999999999887655 56788999999999999999899999999999888
Q ss_pred EEEEEEEEEECCCCC
Q 031399 129 VTVVAVEFKFNDTGK 143 (160)
Q Consensus 129 ~~~~~~~i~~~~~g~ 143 (160)
.+...+++. ..+++
T Consensus 202 k~~~~g~l~-~~~~d 215 (237)
T KOG4781|consen 202 KCKTFGELN-VQSGD 215 (237)
T ss_pred ccceeeEEE-EecCC
Confidence 887888887 44443
No 25
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.00 E-value=9.5e-09 Score=69.96 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=67.1
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCEE
Q 031399 66 FFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLV 145 (160)
Q Consensus 66 ~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lv 145 (160)
+.+.+|||.+++++..++...+ +.+.. ..+++..|++|+..+.+++++.++++.||++.+.+++++ ++|+++
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~~----~~~~~--~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~--Q~g~~~ 85 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAARTV----PDDRV--PHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAV--QNGKVI 85 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhhC----CCCCC--eEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEE--ECCEEE
Confidence 4689999999999888665432 22223 468999999999988899999999999999999999998 569999
Q ss_pred EEEEEEEE
Q 031399 146 CASHATFY 153 (160)
Q Consensus 146 a~a~~~~~ 153 (160)
..++++|.
T Consensus 86 ~~a~~sf~ 93 (94)
T cd03445 86 FTATASFQ 93 (94)
T ss_pred EEEEEEEe
Confidence 99998874
No 26
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=98.94 E-value=1e-07 Score=67.17 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=78.8
Q ss_pred EEEEe--CCCCcccHHHHHHHHHHHHHHHHHhcc-------c-CCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcE
Q 031399 60 ICHLS--NFFGGIHGGAIAAFSERMAIACARTVV-------A-EDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNV 129 (160)
Q Consensus 60 ~~~~~--n~~g~vHGG~~~~l~D~~~~~~~~~~~-------~-~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~ 129 (160)
.+++. ++.|.+|.+.+..+++.+....+.... . .+...+.++.+++|++|++.|++|.+++++.+.|++.
T Consensus 6 ~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v~~~v~~~~~~~ 85 (126)
T TIGR02799 6 RVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDDLLTVTTRVVELKGAS 85 (126)
T ss_pred EEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCCEEEEEEEEEecCceE
Confidence 34444 899999999999999987665443321 1 1344677899999999999999999999999999999
Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEeccc
Q 031399 130 TVVAVEFKFNDTGKLVCASHATFYNTPI 157 (160)
Q Consensus 130 ~~~~~~i~~~~~g~lva~a~~~~~~~~~ 157 (160)
+.+..+++ .+|+++|.+..++..+..
T Consensus 86 ~~~~~~i~--~~g~~~a~~~~~~v~vd~ 111 (126)
T TIGR02799 86 LVFAQEVR--RGDTLLCEATVEVACVDA 111 (126)
T ss_pred EEEEEEEE--eCCEEEEEEEEEEEEEEC
Confidence 99999998 368999999998887753
No 27
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=98.88 E-value=9e-08 Score=67.43 Aligned_cols=82 Identities=11% Similarity=0.071 Sum_probs=65.3
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCC--cEEEEEEEEEECCCCC
Q 031399 66 FFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGR--NVTVVAVEFKFNDTGK 143 (160)
Q Consensus 66 ~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr--~~~~~~~~i~~~~~g~ 143 (160)
+.-++||..++++++.++.. .. .+...+....+++|++|+..|++|++++++++... .++.++++++ +++|+
T Consensus 44 ~~~i~~g~~~~~~~~~~~~~----~~-~g~~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~-~~~g~ 117 (128)
T cd03449 44 GGRIAHGMLTASLISAVLGT----LL-PGPGTIYLSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCT-NQNGE 117 (128)
T ss_pred CCceecHHHHHHHHHHHHhc----cC-CCceEEEEEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEE-eCCCC
Confidence 34689999999988764321 11 13344567889999999999999999999987755 7888999998 77899
Q ss_pred EEEEEEEEEE
Q 031399 144 LVCASHATFY 153 (160)
Q Consensus 144 lva~a~~~~~ 153 (160)
++++++.+.+
T Consensus 118 ~v~~g~~~~~ 127 (128)
T cd03449 118 VVIEGEAVVL 127 (128)
T ss_pred EEEEEEEEEe
Confidence 9999998875
No 28
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=98.88 E-value=3.5e-08 Score=77.72 Aligned_cols=82 Identities=24% Similarity=0.334 Sum_probs=62.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCEEE
Q 031399 67 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVC 146 (160)
Q Consensus 67 ~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva 146 (160)
.+.+|||.+++++-.++.... + +......+++++|++|++.| +++++.+++|.||+..+++++++ ++|++++
T Consensus 9 g~~~~GG~~a~~~~~A~~~~~----~-~~~~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~--q~~~~~~ 80 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAARTHA----P-PPGFDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELS--QDGKVVA 80 (255)
T ss_dssp TTCE-HHHHHHHHHHHHHHCH----T-TTSSEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEE--ETTEEEE
T ss_pred CCcChhHHHHHHHHHHHHHhc----c-CCCCceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEE--ECCcCEE
Confidence 678999988877665433322 1 12244579999999999998 99999999999999999999998 6788999
Q ss_pred EEEEEEEecc
Q 031399 147 ASHATFYNTP 156 (160)
Q Consensus 147 ~a~~~~~~~~ 156 (160)
+++++|....
T Consensus 81 ~a~~~f~~~~ 90 (255)
T PF13622_consen 81 TATASFGRPE 90 (255)
T ss_dssp EEEEEEE--T
T ss_pred EEEEEEccCc
Confidence 9999997654
No 29
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=98.86 E-value=3.2e-07 Score=63.46 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=73.8
Q ss_pred EEEe--CCCCcccHHHHHHHHHHHHHHHHHhcc-------cCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEE
Q 031399 61 CHLS--NFFGGIHGGAIAAFSERMAIACARTVV-------AEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTV 131 (160)
Q Consensus 61 ~~~~--n~~g~vHGG~~~~l~D~~~~~~~~~~~-------~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~ 131 (160)
+++. ++.|.+|.+.++.+++.+......... ..+...+.++.+++|++|++.|+.|+++.++.+.|++.+.
T Consensus 4 V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~~~~~~~s~~ 83 (117)
T TIGR00051 4 VYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQIEELNGFSFV 83 (117)
T ss_pred EEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEEEecCcEEEE
Confidence 4444 899999999999999998665443321 1234567889999999999999999999999999999999
Q ss_pred EEEEEEECCCCCEEEEEEEEEEec
Q 031399 132 VAVEFKFNDTGKLVCASHATFYNT 155 (160)
Q Consensus 132 ~~~~i~~~~~g~lva~a~~~~~~~ 155 (160)
++.+++ ++++++++.+..+...+
T Consensus 84 ~~~~i~-~~~~~~~~~~~~~~v~~ 106 (117)
T TIGR00051 84 FSQEIF-NEDEALLKAATVIVVCV 106 (117)
T ss_pred EEEEEE-eCCCcEEEeeEEEEEEE
Confidence 999998 56677766665544344
No 30
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=98.82 E-value=3.6e-07 Score=66.27 Aligned_cols=91 Identities=18% Similarity=0.236 Sum_probs=77.6
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcc-------cCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEE
Q 031399 65 NFFGGIHGGAIAAFSERMAIACARTVV-------AEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFK 137 (160)
Q Consensus 65 n~~g~vHGG~~~~l~D~~~~~~~~~~~-------~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~ 137 (160)
+..|.+|-+.+..+++.+-.-.+.... ..+...+.++++++|++|++.|+.++++.++.+.|++...+.-+|+
T Consensus 18 D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d~l~v~~~v~~~~~~s~~~~~~i~ 97 (137)
T COG0824 18 DAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGDVLTVRTRVEELGGKSLTLGYEIV 97 (137)
T ss_pred CcccEEecchHHHHHHHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCCEEEEEEEEEeecCeEEEEEEEEE
Confidence 789999999999999998665554421 1124577899999999999999999999999999999999999999
Q ss_pred ECCCCCEEEEEEEEEEeccc
Q 031399 138 FNDTGKLVCASHATFYNTPI 157 (160)
Q Consensus 138 ~~~~g~lva~a~~~~~~~~~ 157 (160)
+++ +++++++.+...+..
T Consensus 98 -~~~-~l~a~~~~~~V~v~~ 115 (137)
T COG0824 98 -NED-ELLATGETTLVCVDL 115 (137)
T ss_pred -eCC-EEEEEEEEEEEEEEC
Confidence 444 999999999988863
No 31
>COG5496 Predicted thioesterase [General function prediction only]
Probab=98.72 E-value=4.1e-07 Score=64.54 Aligned_cols=92 Identities=13% Similarity=0.123 Sum_probs=82.8
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCEE
Q 031399 66 FFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLV 145 (160)
Q Consensus 66 ~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lv 145 (160)
..+.+-=+++..+++.++.-++..+++.+...+..+.++++++|+++|..|.+.+++.+..++...++.+.. ++|.++
T Consensus 27 ~~~VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~~V~i~~~l~~v~Gr~v~f~i~a~--~~~~~I 104 (130)
T COG5496 27 MLNVLATPAMIGFMENASYELLQPYLDNGETTVGTEVLVRHLAATPPGLTVTIGARLEKVEGRKVKFRIIAM--EGGDKI 104 (130)
T ss_pred ccceeehHHHHHHHHHHHHHHHHhhCcCCcceeeEEEEeeeccCCCCCCeEEEEEEEEEEeccEEEEEEEEe--eCCcEE
Confidence 346677789999999999999999998888888899999999999999999999999999888888888886 789999
Q ss_pred EEEEEEEEecccCC
Q 031399 146 CASHATFYNTPIAK 159 (160)
Q Consensus 146 a~a~~~~~~~~~~~ 159 (160)
.+++++-.++|.++
T Consensus 105 g~g~h~R~iv~~~k 118 (130)
T COG5496 105 GEGTHTRVIVPREK 118 (130)
T ss_pred eeeEEEEEEecHHH
Confidence 99999999998764
No 32
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=98.67 E-value=2.7e-06 Score=59.44 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=70.4
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHh------cccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEE
Q 031399 65 NFFGGIHGGAIAAFSERMAIACART------VVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKF 138 (160)
Q Consensus 65 n~~g~vHGG~~~~l~D~~~~~~~~~------~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~ 138 (160)
+ .|.+|-+.+..++|.+-...+.. ....+...+.++.+++|++|++.++.++++.++.+.|++.+.++.+++.
T Consensus 7 D-~ghv~n~~Y~~~~e~ar~~~~~~~g~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~~s~~~~~~i~~ 85 (121)
T PF13279_consen 7 D-NGHVNNARYLRYFEEAREEFLEELGLYDELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEIGGKSFRFEQEIFR 85 (121)
T ss_dssp --TSSB-HHHHHHHHHHHHHHHHHHHTSCHHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEEESSEEEEEEEEEE
T ss_pred c-CCeEcHHHHHHHHHHHHHHHHHhcchhhHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEECCcEEEEEEEEEE
Confidence 6 79999999999999975544421 1123456778999999999999999999999999999999999999996
Q ss_pred CCCCC--EEEEEEEEEEeccc
Q 031399 139 NDTGK--LVCASHATFYNTPI 157 (160)
Q Consensus 139 ~~~g~--lva~a~~~~~~~~~ 157 (160)
..+|+ ++|++..++..+..
T Consensus 86 ~~~g~~~~~a~~~~~~v~~d~ 106 (121)
T PF13279_consen 86 PADGKGELAATGRTVMVFVDY 106 (121)
T ss_dssp CSTTEEEEEEEEEEEEEEEET
T ss_pred cCCCceEEEEEEEEEEEEEeC
Confidence 34555 49999988887754
No 33
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=98.50 E-value=2.1e-05 Score=55.56 Aligned_cols=85 Identities=19% Similarity=0.136 Sum_probs=66.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccc--CCce-eEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCE
Q 031399 68 GGIHGGAIAAFSERMAIACARTVVA--EDKE-IFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKL 144 (160)
Q Consensus 68 g~vHGG~~~~l~D~~~~~~~~~~~~--~~~~-~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~l 144 (160)
..++|=.+.-++..+++........ .+.. .....-++.|.+|+++|+.+++++++++.+++...++++++ .+|++
T Consensus 43 pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pgd~l~i~~~v~~~~~~~~~~~~~~~--~~g~~ 120 (131)
T cd01288 43 PIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGDQLILEVELLKLRRGIGKFKGKAY--VDGKL 120 (131)
T ss_pred CcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEE--ECCEE
Confidence 7788877777777776665432211 1223 23445789999999999999999999999999999999997 57899
Q ss_pred EEEEEEEEEe
Q 031399 145 VCASHATFYN 154 (160)
Q Consensus 145 va~a~~~~~~ 154 (160)
+++++.+|+.
T Consensus 121 v~~~~~~~~~ 130 (131)
T cd01288 121 VAEAELMFAI 130 (131)
T ss_pred EEEEEEEEEE
Confidence 9999998875
No 34
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.47 E-value=1e-05 Score=70.05 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=78.3
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcc------cCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEE
Q 031399 65 NFFGGIHGGAIAAFSERMAIACARTVV------AEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKF 138 (160)
Q Consensus 65 n~~g~vHGG~~~~l~D~~~~~~~~~~~------~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~ 138 (160)
+..|.+|-+.+..++|.+......... ..+...+.++.+++|++|++.|+.|+++.++.+.|++.+.++.+++
T Consensus 358 D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~~~~~~~~vvv~~~i~y~rp~~~gD~v~I~t~v~~~~~~s~~~~~~i~- 436 (495)
T PRK07531 358 DYNGHMTEHRYLQVFGDTTDALLRLIGVDAAYVAAGHSYYTVETHIRHLGEAKAGQALHVETQLLSGDEKRLHLFHTLY- 436 (495)
T ss_pred CCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCcEEEEEEEEEEcccCCCCCEEEEEEEEEecCCcEEEEEEEEE-
Confidence 899999999999999998665443321 1233456789999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEEEEeccc
Q 031399 139 NDTGKLVCASHATFYNTPI 157 (160)
Q Consensus 139 ~~~g~lva~a~~~~~~~~~ 157 (160)
+++|+++|++..++..+..
T Consensus 437 ~~~g~l~A~g~~~~v~vD~ 455 (495)
T PRK07531 437 DAGGELIATAEHMLLHVDL 455 (495)
T ss_pred CCCCcEEEEEEEEEEEEEC
Confidence 6789999999999888764
No 35
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=98.46 E-value=3.4e-05 Score=56.10 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=64.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcc-cCCceeEEE-EEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCE
Q 031399 67 FGGIHGGAIAAFSERMAIACARTVV-AEDKEIFLG-ELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKL 144 (160)
Q Consensus 67 ~g~vHGG~~~~l~D~~~~~~~~~~~-~~~~~~vT~-~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~l 144 (160)
...++|=.+.-++-.++++.+.... ..+...... .-+++|++|+++|++|++++++.+.+++++.++++++ .+|++
T Consensus 57 ~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd~l~i~~~i~~~~~~~v~~~~~~~--~~g~~ 134 (147)
T PRK00006 57 YPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGDQLILEVELLKQRRGIWKFKGVAT--VDGKL 134 (147)
T ss_pred CCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEE--ECCEE
Confidence 3567887776666665555332221 112222222 3479999999999999999999999999999999997 57999
Q ss_pred EEEEEEEEEec
Q 031399 145 VCASHATFYNT 155 (160)
Q Consensus 145 va~a~~~~~~~ 155 (160)
+++++.++++.
T Consensus 135 v~~~~~~~~~~ 145 (147)
T PRK00006 135 VAEAELMFAIR 145 (147)
T ss_pred EEEEEEEEEEE
Confidence 99999999864
No 36
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=98.45 E-value=2.4e-06 Score=68.13 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=65.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCEEEE
Q 031399 68 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCA 147 (160)
Q Consensus 68 g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva~ 147 (160)
+.++||.+++.+=.++...+ +.+... .+++++|++|+..+.+++++.+++|.||++...+++++ ++|+++++
T Consensus 21 ~~~fGG~~~Aqal~Aa~~tv----~~~~~~--~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~--Q~g~~~~~ 92 (271)
T TIGR00189 21 NRVFGGQVVGQALAAASKTV----PEEFIP--HSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAV--QHGKTIFT 92 (271)
T ss_pred CceEccHHHHHHHHHHHhcC----CCCCCc--ceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEE--ECCEEEEE
Confidence 58999999998766544332 323333 58999999999988899999999999999999999998 67899999
Q ss_pred EEEEEE
Q 031399 148 SHATFY 153 (160)
Q Consensus 148 a~~~~~ 153 (160)
++++|.
T Consensus 93 a~asf~ 98 (271)
T TIGR00189 93 LQASFQ 98 (271)
T ss_pred EEEEcc
Confidence 999987
No 37
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=98.42 E-value=9.3e-06 Score=57.33 Aligned_cols=78 Identities=17% Similarity=0.139 Sum_probs=59.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCc-EEEEEEEEEECCCCCEEE
Q 031399 68 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRN-VTVVAVEFKFNDTGKLVC 146 (160)
Q Consensus 68 g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~-~~~~~~~i~~~~~g~lva 146 (160)
-++||...++++.....- ..+ .......++++|.+|+.+|++|+++++|....+. ++.+++++. +++|+++.
T Consensus 44 ~ia~G~~~~~~~~~~~~~----~~~--~~~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~-nq~G~~v~ 116 (123)
T cd03455 44 LYVNGPTLAGLVIRYVTD----WAG--PDARVKSFAFRLGAPLYAGDTLRFGGRVTAKRDDEVVTVELWAR-NSEGDHVM 116 (123)
T ss_pred eEEEHHHHHHHHHHHHHH----ccC--CcceEEEEEEEeeccccCCCEEEEEEEEEeeccCcEEEEEEEEE-cCCCCEEE
Confidence 468999999998764322 112 1222357899999999999999999999865332 777888888 89999999
Q ss_pred EEEEEE
Q 031399 147 ASHATF 152 (160)
Q Consensus 147 ~a~~~~ 152 (160)
++++++
T Consensus 117 ~g~a~v 122 (123)
T cd03455 117 AGTATV 122 (123)
T ss_pred eEEEEE
Confidence 998775
No 38
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=98.37 E-value=1.2e-05 Score=56.25 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=62.1
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCC----cEEEEEEEEEECCC
Q 031399 66 FFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGR----NVTVVAVEFKFNDT 141 (160)
Q Consensus 66 ~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr----~~~~~~~~i~~~~~ 141 (160)
+.-++||..+++++..+..... +..........+++|.+|+.+|++|++++++..... ....++.++. +++
T Consensus 41 ~~~i~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~-n~~ 115 (127)
T cd03441 41 GGRIAHGMLTLSLASGLLVQWL----PGTDGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEAR-NQG 115 (127)
T ss_pred CCceechHHHHHHHHhhhhhhc----cCcccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEE-eCC
Confidence 3578999999999887543321 111344457899999999999999999999987743 4778888888 778
Q ss_pred CCEEEEEEEE
Q 031399 142 GKLVCASHAT 151 (160)
Q Consensus 142 g~lva~a~~~ 151 (160)
|+++..++.+
T Consensus 116 g~~v~~g~~~ 125 (127)
T cd03441 116 GEVVLSGEAT 125 (127)
T ss_pred CCEEEEEEEE
Confidence 9998887654
No 39
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=98.36 E-value=5.2e-06 Score=67.17 Aligned_cols=99 Identities=16% Similarity=0.245 Sum_probs=76.3
Q ss_pred eEEEEEeCCeEEEEEe-CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCC
Q 031399 49 IKVHKIQRGRLICHLS-NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGR 127 (160)
Q Consensus 49 l~~~~~~~g~~~~~~~-n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr 127 (160)
+.++.++++..+...+ .....++||.+++.+=.++...+ ++++. -.++++.|++|+..+.+|+.+.+.+|.||
T Consensus 12 l~l~~~~~~~f~g~~~~~~~r~~fGGqv~AQal~AA~~tv----~~~~~--~hSlh~~Fl~pg~~~~pi~y~Ve~lRdGR 85 (286)
T PRK10526 12 LNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETV----PEERL--VHSFHSYFLRPGDSQKPIIYDVETLRDGN 85 (286)
T ss_pred cCcEEccCCeEECcCCCCCCCceechHHHHHHHHHHHhcC----CCCCC--ceEEEEEcCCCCCCCCCEEEEEEEEeCCC
Confidence 5555666654443333 45678999999988766544332 33333 36899999999998889999999999999
Q ss_pred cEEEEEEEEEECCCCCEEEEEEEEEEec
Q 031399 128 NVTVVAVEFKFNDTGKLVCASHATFYNT 155 (160)
Q Consensus 128 ~~~~~~~~i~~~~~g~lva~a~~~~~~~ 155 (160)
+.+..+++++ ++|+++.+++++|...
T Consensus 86 Sfstr~V~a~--Q~g~~if~~~~sF~~~ 111 (286)
T PRK10526 86 SFSARRVAAI--QNGKPIFYMTASFQAP 111 (286)
T ss_pred ceEeEEEEEE--ECCEEEEEEEEEeccC
Confidence 9999999998 6789999999999743
No 40
>PLN02868 acyl-CoA thioesterase family protein
Probab=98.22 E-value=1.1e-05 Score=68.22 Aligned_cols=100 Identities=19% Similarity=0.262 Sum_probs=77.6
Q ss_pred ceEEEEEeCCeEEEEEe-C--CCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEE
Q 031399 48 HIKVHKIQRGRLICHLS-N--FFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVR 124 (160)
Q Consensus 48 gl~~~~~~~g~~~~~~~-n--~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~ 124 (160)
-+.++.++++..+...+ . ..+.+|||.+++.+=.++.. ..+++..+ .+++..|++|...+.+++.+.+++|
T Consensus 135 ~~~l~~~~~~~f~~~~~~~~~~~~~~fGG~~~aqal~Aa~~----~~~~~~~~--~s~~~~Fl~~~~~~~pv~~~V~~lr 208 (413)
T PLN02868 135 ILHLEPLEVDIFRGITLPDAPTFGKVFGGQLVGQALAAASK----TVDPLKLV--HSLHAYFLLVGDINLPIIYQVERIR 208 (413)
T ss_pred hcCcEeccCCeEECCcCCCCcccccccchHHHHHHHHHHHc----cCCCCCCc--eEeeeeecCCCCCCCCEEEEEEEEc
Confidence 36677777776665555 2 35889999999976554433 22323333 6899999999998889999999999
Q ss_pred eCCcEEEEEEEEEECCCCCEEEEEEEEEEec
Q 031399 125 SGRNVTVVAVEFKFNDTGKLVCASHATFYNT 155 (160)
Q Consensus 125 ~gr~~~~~~~~i~~~~~g~lva~a~~~~~~~ 155 (160)
.||+....+++++ ++|+++.++.++|...
T Consensus 209 ~Grs~~~r~v~~~--Q~g~~~~~~~~sf~~~ 237 (413)
T PLN02868 209 DGHNFATRRVDAI--QKGKVIFTLFASFQKE 237 (413)
T ss_pred CCCceEeeEEEEE--ECCeeEEEEeeccccC
Confidence 9999999999998 6789999999998654
No 41
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=98.21 E-value=6.3e-05 Score=53.70 Aligned_cols=82 Identities=21% Similarity=0.160 Sum_probs=60.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCC-CCEE
Q 031399 67 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDT-GKLV 145 (160)
Q Consensus 67 ~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~-g~lv 145 (160)
.-++||-..++++-.+..- .. ..+.......++++|++|+.+|++|+++.+++........++.+++ +++ |+++
T Consensus 42 ~~iahG~l~~~~~~~~~~~---~~-~~~~~~~~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~-nq~~g~~V 116 (126)
T cd03447 42 GTITHGMYTSAAVRALVET---WA-ADNDRSRVRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEAR-NEETGELV 116 (126)
T ss_pred CCeechhHHHHHHHHHHHH---hc-cCCCcceEEEEEEEEcccCcCCCEEEEEEEEEEEeCCeEEEEEEEE-ECCCCCEE
Confidence 4578998888887554321 12 1122333456899999999999999999999887666778888998 566 8999
Q ss_pred EEEEEEEE
Q 031399 146 CASHATFY 153 (160)
Q Consensus 146 a~a~~~~~ 153 (160)
..++..+.
T Consensus 117 ~~g~~~v~ 124 (126)
T cd03447 117 LRGEAEVE 124 (126)
T ss_pred EEEEEEEe
Confidence 88887654
No 42
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=98.20 E-value=2e-05 Score=56.91 Aligned_cols=85 Identities=13% Similarity=0.037 Sum_probs=59.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCC-------cEEEEEEEEEEC
Q 031399 67 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGR-------NVTVVAVEFKFN 139 (160)
Q Consensus 67 ~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr-------~~~~~~~~i~~~ 139 (160)
.-++||..+++++-. ...... ...........+++|.+|+.+|++|+++++|+..-. .++.++++++ +
T Consensus 53 ~~ia~G~l~~~~~~~---~~~~~~-~~~~~~~~~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~-n 127 (146)
T cd03451 53 RRLVNSLFTLSLALG---LSVNDT-SLTAVANLGYDEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGY-N 127 (146)
T ss_pred CccccHHhHHHHHhh---heehhc-cccceeccCccEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEE-C
Confidence 357899888876532 111111 100111112248999999999999999999986532 4888899998 8
Q ss_pred CCCCEEEEEEEEEEecc
Q 031399 140 DTGKLVCASHATFYNTP 156 (160)
Q Consensus 140 ~~g~lva~a~~~~~~~~ 156 (160)
++|++|++++.+..+..
T Consensus 128 q~g~~V~~~~~~~~~~~ 144 (146)
T cd03451 128 QDGEPVLSFERTALVPK 144 (146)
T ss_pred CCCCEEEEEEehhEEEc
Confidence 99999999999887654
No 43
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.19 E-value=6.2e-05 Score=53.43 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=58.6
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEe----CCcEEEEEEEEEECCCC
Q 031399 67 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRS----GRNVTVVAVEFKFNDTG 142 (160)
Q Consensus 67 ~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~----gr~~~~~~~~i~~~~~g 142 (160)
.-++||-.+++++..... ... +..... .+++++|++|+.+|++|+++++|+.. |+.++.++.+++ +++|
T Consensus 44 ~~i~~G~~~~~~~~~~~~---~~~-~~~~~i--~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~-nq~g 116 (127)
T cd03453 44 GVIAHGMLTMGLLGRLVT---DWV-GDPGRV--VSFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDAT-DQAG 116 (127)
T ss_pred CcEecHHHHHHHHHHHHH---HHc-CCccce--EEEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEE-EcCC
Confidence 457899988888754322 122 212222 57889999999999999999999643 456888999998 8899
Q ss_pred CEEEEEEEEE
Q 031399 143 KLVCASHATF 152 (160)
Q Consensus 143 ~lva~a~~~~ 152 (160)
+++.++++..
T Consensus 117 ~~v~~g~a~v 126 (127)
T cd03453 117 GKKVLGRAIV 126 (127)
T ss_pred CEEEEEEEEE
Confidence 9998888654
No 44
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.15 E-value=3.5e-05 Score=55.25 Aligned_cols=82 Identities=21% Similarity=0.240 Sum_probs=56.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHhcccCCcee-EEEEEEEEEeecCCCCCEEEEEEEEEEeC------CcEEEEEEEEEECC
Q 031399 68 GGIHGGAIAAFSERMAIACARTVVAEDKEI-FLGELGISYLSAAPHNAELIMEASVVRSG------RNVTVVAVEFKFND 140 (160)
Q Consensus 68 g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~-vT~~l~i~fl~p~~~g~~v~~~a~v~~~g------r~~~~~~~~i~~~~ 140 (160)
-++||..+++++..+.. .......... ....-+++|++|+++|++|+++++|++.. +.++.++.+++ ++
T Consensus 51 ~ia~G~~~~a~~~~~~~---~~~~~~~~~~~~~g~~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~-nq 126 (140)
T cd03446 51 RIAHGLLTLSIATGLLQ---RLGVFERTVVAFYGIDNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVV-NQ 126 (140)
T ss_pred ceeccccHHHHHhhHhh---hcccccceeeEEeccceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEE-cC
Confidence 47888888776644221 1111111111 11233899999999999999999998653 23677888888 88
Q ss_pred CCCEEEEEEEEEE
Q 031399 141 TGKLVCASHATFY 153 (160)
Q Consensus 141 ~g~lva~a~~~~~ 153 (160)
+|++|++++.+..
T Consensus 127 ~g~~v~~~~~~~l 139 (140)
T cd03446 127 RGEVVQSGEMSLL 139 (140)
T ss_pred CCCEEEEEEEeee
Confidence 9999999988765
No 45
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.12 E-value=6.9e-05 Score=53.88 Aligned_cols=83 Identities=17% Similarity=0.092 Sum_probs=56.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHhcccCCceeEEE-EEEEEEeecCCCCCEEEEEEEEEEe-------CCcEEEEEEEEEEC
Q 031399 68 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLG-ELGISYLSAAPHNAELIMEASVVRS-------GRNVTVVAVEFKFN 139 (160)
Q Consensus 68 g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~-~l~i~fl~p~~~g~~v~~~a~v~~~-------gr~~~~~~~~i~~~ 139 (160)
-++||..+++++-. +............... ..+++|.+|+.+|++|+++.+|.+. ++.++.+++++. +
T Consensus 49 ~ia~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~-n 124 (140)
T cd03454 49 LAASGWHTAAITMR---LLVDAGLSGSASGGSPGIDELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETL-N 124 (140)
T ss_pred eeechHHHHHHHHH---hhhhhccccceEEEEcceeeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEE-c
Confidence 36788777766532 1111111111112222 3499999999999999999999755 344788899998 8
Q ss_pred CCCCEEEEEEEEEEe
Q 031399 140 DTGKLVCASHATFYN 154 (160)
Q Consensus 140 ~~g~lva~a~~~~~~ 154 (160)
++|++|++++.+.++
T Consensus 125 q~g~~v~~~~~~~~~ 139 (140)
T cd03454 125 QRGEVVLTFEATVLV 139 (140)
T ss_pred CCCCEEEEEEehhee
Confidence 999999999987654
No 46
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=98.07 E-value=7.9e-05 Score=55.37 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=50.4
Q ss_pred eEEEEEEEEEeecCCCCCEEEEEEEEEEe----CCcEEEEEEEEEECCCCCEEEEEEEEEEecc
Q 031399 97 IFLGELGISYLSAAPHNAELIMEASVVRS----GRNVTVVAVEFKFNDTGKLVCASHATFYNTP 156 (160)
Q Consensus 97 ~vT~~l~i~fl~p~~~g~~v~~~a~v~~~----gr~~~~~~~~i~~~~~g~lva~a~~~~~~~~ 156 (160)
.+-.+.+++|++|+.+|++|+++.+|+.. ++.++.++++++ +++|++|.+++.+++..+
T Consensus 84 ~~~~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~-Nq~Ge~V~~~~~~~~~r~ 146 (159)
T PRK13692 84 IVQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVT-NEEGDVVQETYTTLAGRA 146 (159)
T ss_pred eEeeeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEE-cCCCCEEEEEEEEEEEec
Confidence 44456799999999999999999999733 457899999999 899999999999998764
No 47
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=97.99 E-value=0.0003 Score=52.66 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=48.7
Q ss_pred EEEEEEEEeecCCCCCEEEEEEEEEEe----CCcEEEEEEEEEECCCCCEEEEEEEEEEecc
Q 031399 99 LGELGISYLSAAPHNAELIMEASVVRS----GRNVTVVAVEFKFNDTGKLVCASHATFYNTP 156 (160)
Q Consensus 99 T~~l~i~fl~p~~~g~~v~~~a~v~~~----gr~~~~~~~~i~~~~~g~lva~a~~~~~~~~ 156 (160)
-.+-+++|++|+.+|++|+++.+|... ++.++.++.+++ |++|++|+++..++++.+
T Consensus 86 ~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~-NQ~Ge~V~~~~~~~~~~~ 146 (166)
T PRK13691 86 QVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCT-NDDGELVMEAYTTLMGQQ 146 (166)
T ss_pred eeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEE-CCCCCEEEEEEEEEEEec
Confidence 345688999999999999999998744 446888999998 899999999999987765
No 48
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.98 E-value=0.00023 Score=58.91 Aligned_cols=86 Identities=19% Similarity=0.324 Sum_probs=72.9
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCE
Q 031399 65 NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKL 144 (160)
Q Consensus 65 n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~l 144 (160)
|+.|++--|++..++-++.-..+...- ....+.=++++-|++|+..++.+++..+++..||+...++++++ -+|..
T Consensus 345 n~~Gtis~gv~~~ll~e~~qr~l~k~~--~~niiIE~i~iyflk~vqid~~l~I~prIl~~gR~~a~idvei~--~~~~i 420 (432)
T COG4109 345 NSLGTISNGVFTELLTEVVQRVLRKKK--KRNIIIENITIYFLKPVQIDSVLEIYPRILEEGRKFAKIDVEIY--HDGQI 420 (432)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHhc--CCceEEEeeeeeeecceecccEEEEeeeeeccccccceeEEEEe--eCcch
Confidence 999999999999999998777666542 34555569999999999999999999999999999999999999 45677
Q ss_pred EEEEEEEEEe
Q 031399 145 VCASHATFYN 154 (160)
Q Consensus 145 va~a~~~~~~ 154 (160)
++.|..+..+
T Consensus 421 vaKAiv~~ql 430 (432)
T COG4109 421 VAKAIVTVQL 430 (432)
T ss_pred hhhheeeeec
Confidence 8887766543
No 49
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=97.97 E-value=0.0011 Score=47.68 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=46.0
Q ss_pred EEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCEEEEEEEEEE
Q 031399 102 LGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFY 153 (160)
Q Consensus 102 l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva~a~~~~~ 153 (160)
-+++|.+|+++|++|++.+++.+..++...++++++ .+|+++++++.++.
T Consensus 90 ~~~kF~~~v~pGd~l~i~~~i~~~~~~~~~~~~~~~--~~g~~va~~~~~~~ 139 (140)
T TIGR01750 90 DKAKFRRPVVPGDQLILHAEFLKKRRKIGKFKGEAT--VDGKVVAEAEITFA 139 (140)
T ss_pred ceeEECCccCCCCEEEEEEEEEEccCCEEEEEEEEE--ECCEEEEEEEEEEE
Confidence 489999999999999999999999999999999996 67999999999875
No 50
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=97.96 E-value=4.6e-05 Score=63.14 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=58.1
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEE
Q 031399 65 NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFK 137 (160)
Q Consensus 65 n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~ 137 (160)
|..|.+|||+++-.+++.+...+..+.........++ .|+|.+|+.+|..|.+.+.+....++...+++++.
T Consensus 212 N~~G~iFGGflMrka~ElA~~~A~~f~~~~p~~rsVD-~i~F~~pVdvG~~L~f~s~V~yT~~k~~~vqv~~~ 283 (357)
T KOG2763|consen 212 NIHGTIFGGFLMRKALELAEITAKLFCKGRPATRSVD-DIEFQKPVDVGCVLTFSSFVTYTDNKSIYVQVKAV 283 (357)
T ss_pred CccCceehHHHHHHHHHHHHHHHHHHcCCCceEEEec-hhhccCcceeeeEEEEeeEEEEecCCceeEEEEEe
Confidence 9999999999999999999998887764333333333 59999999999999999999999877555555554
No 51
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=97.96 E-value=0.00016 Score=52.46 Aligned_cols=83 Identities=14% Similarity=0.100 Sum_probs=59.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcccCCceeEE-EEEEEEEeecCCCCCEEEEEEEEEEeC------CcEEEEEEEEEEC
Q 031399 67 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFL-GELGISYLSAAPHNAELIMEASVVRSG------RNVTVVAVEFKFN 139 (160)
Q Consensus 67 ~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT-~~l~i~fl~p~~~g~~v~~~a~v~~~g------r~~~~~~~~i~~~ 139 (160)
.-++||...++++..... .. ..+..... ..-+++|++|+.+|++|+++.+|+..- +.++.+++++. +
T Consensus 50 ~~ia~G~l~~s~~~~l~~----~~-~~~~~~~~~g~~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~-n 123 (142)
T cd03452 50 KRVAHGYFVLSAAAGLFV----DP-APGPVLANYGLENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVT-N 123 (142)
T ss_pred CeeecHHHHHHHHhhhCc----cC-CcccEEEEeccceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEE-e
Confidence 357888888887766321 11 11222211 134999999999999999999997652 13777899998 8
Q ss_pred CCCCEEEEEEEEEEec
Q 031399 140 DTGKLVCASHATFYNT 155 (160)
Q Consensus 140 ~~g~lva~a~~~~~~~ 155 (160)
++|++|.+++...++.
T Consensus 124 q~g~~V~~~~~~~~~~ 139 (142)
T cd03452 124 QNGELVASYDILTLVA 139 (142)
T ss_pred cCCCEEEEEEehHeeE
Confidence 9999999999877654
No 52
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=97.90 E-value=0.00062 Score=46.93 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=68.8
Q ss_pred cccHHHHHHHHHHHHHHHHHhcccC----CceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCE
Q 031399 69 GIHGGAIAAFSERMAIACARTVVAE----DKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKL 144 (160)
Q Consensus 69 ~vHGG~~~~l~D~~~~~~~~~~~~~----~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~l 144 (160)
.+|=.+++-+.|......+....+. .....|++-+|.|..|....+++..+.+..+.++.....++++| +++|++
T Consensus 16 ~~~~a~lA~~SD~~~l~~~~~~~~~~~~~~~~~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~-~~~G~L 94 (104)
T cd03444 16 RLHAAALAYLSDSLLLGTALRPHGLPLFDASASASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIF-TRDGEL 94 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcccCcceEeeeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEE-CCCCCE
Confidence 6888999999999776555443321 12567899999999999988999999999999999999999999 899999
Q ss_pred EEEEEEEE
Q 031399 145 VCASHATF 152 (160)
Q Consensus 145 va~a~~~~ 152 (160)
||+....-
T Consensus 95 vAs~~Q~~ 102 (104)
T cd03444 95 VASVAQEG 102 (104)
T ss_pred EEEEEEee
Confidence 99987653
No 53
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=97.87 E-value=0.00039 Score=59.97 Aligned_cols=84 Identities=12% Similarity=0.107 Sum_probs=63.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEe--CCcEEEEEEEEEECCCCCE
Q 031399 67 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRS--GRNVTVVAVEFKFNDTGKL 144 (160)
Q Consensus 67 ~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~--gr~~~~~~~~i~~~~~g~l 144 (160)
.-++||-.+++++..+.. ... + +...+-...+++|.+|+.+|++|+++.+++.. ++.++.++++++ +++|++
T Consensus 58 ~~IahG~l~~s~~~~l~~---~~~-~-g~~~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~-nq~G~~ 131 (466)
T PRK08190 58 HVVAHGMWGGALISAVLG---TRL-P-GPGTIYLGQSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCT-NQDGEV 131 (466)
T ss_pred CceeCHHHHHHHHHHHHh---hhC-C-CcceEEEEEEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEE-eCCCCE
Confidence 357899888887653221 112 2 23344567899999999999999999999754 666788888998 799999
Q ss_pred EEEEEEEEEecc
Q 031399 145 VCASHATFYNTP 156 (160)
Q Consensus 145 va~a~~~~~~~~ 156 (160)
|.+++.++.+..
T Consensus 132 V~~g~~~~l~~~ 143 (466)
T PRK08190 132 VITGTAEVIAPT 143 (466)
T ss_pred EEEEEEEeeccc
Confidence 999999887654
No 54
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=97.85 E-value=0.0037 Score=45.16 Aligned_cols=103 Identities=12% Similarity=0.189 Sum_probs=69.2
Q ss_pred EEEEeCCeEEEEEe---C------CCCcccHHHHHHHHHHHHHHHH-H-hc-cc-CCc-eeEEEEEEEEEeecCCC-CCE
Q 031399 51 VHKIQRGRLICHLS---N------FFGGIHGGAIAAFSERMAIACA-R-TV-VA-EDK-EIFLGELGISYLSAAPH-NAE 115 (160)
Q Consensus 51 ~~~~~~g~~~~~~~---n------~~g~vHGG~~~~l~D~~~~~~~-~-~~-~~-~~~-~~vT~~l~i~fl~p~~~-g~~ 115 (160)
+.+.+++.+++... | +.+.+-|=.+.-.+=.+++... . .. .+ +++ .....-=+++|.+|+.. |+.
T Consensus 19 v~~~~~~~~~~~~~v~~~~~f~~~~~~~~P~~l~iE~mAQa~a~~~g~~~~~~~~~~~~g~l~~i~~~~f~~~v~p~Gd~ 98 (138)
T cd01289 19 VISWDDDSIHCRATVHPDPLFPLRAHGRLPAWVGIEYMAQAIAAHGGLLARQQGNPPRPGFLLGSRKYEAHVDRFDLGST 98 (138)
T ss_pred EEEEcCCEEEEEEEeCCCCcCccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEEEEEcceeCCCCe
Confidence 44556777777765 1 2245656555555555544432 1 11 11 222 22333348999999755 999
Q ss_pred EEEEEEEEEeCC-cEEEEEEEEEECCCCCEEEEEEEEEEec
Q 031399 116 LIMEASVVRSGR-NVTVVAVEFKFNDTGKLVCASHATFYNT 155 (160)
Q Consensus 116 v~~~a~v~~~gr-~~~~~~~~i~~~~~g~lva~a~~~~~~~ 155 (160)
++++++..+..+ .+..++++++ -+|+++|+|+.+++..
T Consensus 99 l~i~~~~~~~~~~~~~~~~~~~~--v~~~~va~a~l~~~~p 137 (138)
T cd01289 99 LLIVVAELLQGDSGLGVFECTIE--DQGGVLASGRLNVYQP 137 (138)
T ss_pred eEEEeeeeeeCCCcEEEEEEEEE--ECCEEEEEEEEEEEcC
Confidence 999999998874 9999999998 5689999999988764
No 55
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=97.79 E-value=0.0042 Score=43.48 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=45.0
Q ss_pred EEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCEEEEEEEE
Q 031399 98 FLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHAT 151 (160)
Q Consensus 98 vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva~a~~~ 151 (160)
....-+++|.+|+.+|+.++++.++...+.....++++++ . +|+++++++.+
T Consensus 77 l~~~~~~kf~~~v~pgd~l~i~~~i~~~~~~~~~~~~~~~-~-~g~~v~~~~~~ 128 (131)
T cd00493 77 LAGVRKVKFRGPVLPGDTLTLEVELLKVRRGLGKFDGRAY-V-DGKLVAEAELM 128 (131)
T ss_pred EEEcceeEECCCcCCCCEEEEEEEEEEeeCCEEEEEEEEE-E-CCEEEEEEEEE
Confidence 3445689999999999999999999999888999999998 3 59999999843
No 56
>PLN02370 acyl-ACP thioesterase
Probab=97.72 E-value=0.0035 Score=53.43 Aligned_cols=93 Identities=9% Similarity=-0.023 Sum_probs=76.4
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcc-------------cCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEE
Q 031399 65 NFFGGIHGGAIAAFSERMAIACARTVV-------------AEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTV 131 (160)
Q Consensus 65 n~~g~vHGG~~~~l~D~~~~~~~~~~~-------------~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~ 131 (160)
+..|.+.=..++.++-+++...+.... ..+...|-..++|+|.|+.+.|+.|+++.++...++..+.
T Consensus 152 D~~g~lsl~~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLtr~~I~~~R~P~~gD~V~V~Twv~~~~k~~~~ 231 (419)
T PLN02370 152 GADRTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTRMQVLVDRYPTWGDVVQVDTWVSASGKNGMR 231 (419)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEEEEEEEEeCcCCCCCCEEEEEEEEeeCCCCEEE
Confidence 788999988899888887766543321 1233456679999999999999999999999999999999
Q ss_pred EEEEEEECCCCCEEEEEEEEEEeccc
Q 031399 132 VAVEFKFNDTGKLVCASHATFYNTPI 157 (160)
Q Consensus 132 ~~~~i~~~~~g~lva~a~~~~~~~~~ 157 (160)
-+.+|+..++|++++++..+++++..
T Consensus 232 Rdf~I~D~~~Ge~la~A~SvWV~mD~ 257 (419)
T PLN02370 232 RDWLVRDCKTGETLTRASSVWVMMNK 257 (419)
T ss_pred EEEEEEECCCCeEEEEEEEEEEEEEC
Confidence 99999833489999999999998864
No 57
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=97.60 E-value=0.0064 Score=52.45 Aligned_cols=149 Identities=11% Similarity=0.062 Sum_probs=90.3
Q ss_pred CCCCCCChHHHHHHHHHHHhhCCCCCCCCCCC----CC---cchhhhhh-cc-e---EEEEEeCCeEEEEEe--------
Q 031399 5 SSAKEVDPEDVSKVIVFLKEVGASSSIPDDCC----TN---DSYSNILG-RH-I---KVHKIQRGRLICHLS-------- 64 (160)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~---~~~~~~~~-~g-l---~~~~~~~g~~~~~~~-------- 64 (160)
+|+-.+|.+.+..+.+|+.+..... .|.... .. ...+-+.. .. + ++.+++++.+++...
T Consensus 285 k~gH~ln~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~m~~~~I~~lLPHR~PmLLVDrIl~~e~~~i~a~k~Vs~De~ff 363 (464)
T PRK13188 285 RPGHAINVEFAKKLKKYIKRNKIAQ-APVYDPNKEPILDINRIMKILPHRYPFLLVDKIIELGDTKIVGIKNVTMNEPFF 363 (464)
T ss_pred CCchHHHHHHHHHHHHHHHHhhhcc-CCCcCCCCCCccCHHHHHHhCCCCCCeEEEEEEeEEeCCEEEEEEEcCCCcHHh
Confidence 3455678888888888887776532 221100 00 00000000 01 1 233445666666654
Q ss_pred -C---CCCcccHHHHHHHHHHHHHHHHHhccc--CCceeEEEE-EEEEEeecCCCCCEEEEEEEEEE-eCCcEEEEEEEE
Q 031399 65 -N---FFGGIHGGAIAAFSERMAIACARTVVA--EDKEIFLGE-LGISYLSAAPHNAELIMEASVVR-SGRNVTVVAVEF 136 (160)
Q Consensus 65 -n---~~g~vHGG~~~~l~D~~~~~~~~~~~~--~~~~~vT~~-l~i~fl~p~~~g~~v~~~a~v~~-~gr~~~~~~~~i 136 (160)
+ ..+.++|=.+.-++=.++++.+....+ .++...-.. -+++|.+|+.+|++|++++++++ ..+.++.+++++
T Consensus 364 ~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGDtL~I~veI~~~~~~giv~f~g~~ 443 (464)
T PRK13188 364 QGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGDTLIFKVELLSPIRRGICQMQGKA 443 (464)
T ss_pred hccCCCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCCEEEEEEEEEEEecCCEEEEEEEE
Confidence 1 246678776665555555544332211 122222233 38999999999999999999986 557788999999
Q ss_pred EECCCCCEEEEEEEEEEecc
Q 031399 137 KFNDTGKLVCASHATFYNTP 156 (160)
Q Consensus 137 ~~~~~g~lva~a~~~~~~~~ 156 (160)
+ .+|++++++...+++..
T Consensus 444 ~--vdGelVaeael~~~v~~ 461 (464)
T PRK13188 444 Y--VNGKLVCEAELMAQIVK 461 (464)
T ss_pred E--ECCEEEEEEEEEEEEec
Confidence 7 68999999999998754
No 58
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=97.50 E-value=0.0029 Score=50.35 Aligned_cols=84 Identities=12% Similarity=0.028 Sum_probs=64.5
Q ss_pred CcccHHHHHHHHHHHH-HHHHHhcccCC---ceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCC
Q 031399 68 GGIHGGAIAAFSERMA-IACARTVVAED---KEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGK 143 (160)
Q Consensus 68 g~vHGG~~~~l~D~~~-~~~~~~~~~~~---~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~ 143 (160)
-..|=-.++.+.|... ..++....... ....+++.++.|+++.+.++++..+.+....+.-....++++| +++|+
T Consensus 181 ~~~~~~~la~~sD~~~l~~~l~~~~~~~~~~~~~aSldhtv~fh~~~~~~~W~l~~~~s~~~~~Grg~~~~~l~-d~~G~ 259 (271)
T TIGR00189 181 PRLHQCALAYLSDLTLLPTALNPHNKAGFDGSMAASLDHSIWFHRPFRADDWLLYKCSSPSASGSRGLVEGKIF-TRDGV 259 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcEEEeeeeeEEEeCCCCCCeeEEEEEEeccccCCceEEEEEEE-CCCCC
Confidence 4457788999999832 23333322111 2346899999999998889999999999988888888899999 99999
Q ss_pred EEEEEEEEE
Q 031399 144 LVCASHATF 152 (160)
Q Consensus 144 lva~a~~~~ 152 (160)
+||+.+..-
T Consensus 260 lvAs~~Qe~ 268 (271)
T TIGR00189 260 LIASTVQEG 268 (271)
T ss_pred EEEEEEeee
Confidence 999987653
No 59
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=97.39 E-value=0.022 Score=40.86 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=40.4
Q ss_pred EEEEEEEEeecCCCCC-EEEEEEEEEE---eCCcEEEEEEEEEECCCCCEEEEEE
Q 031399 99 LGELGISYLSAAPHNA-ELIMEASVVR---SGRNVTVVAVEFKFNDTGKLVCASH 149 (160)
Q Consensus 99 T~~l~i~fl~p~~~g~-~v~~~a~v~~---~gr~~~~~~~~i~~~~~g~lva~a~ 149 (160)
...-+++|++|+.+|+ .+++++++.+ ..+..+.++++++ -+|++++++.
T Consensus 86 ~~~~~~kF~~~v~Pg~~~l~~~v~i~~~~~~~~~~~~~~~~~~--vdg~~v~~~~ 138 (138)
T PF07977_consen 86 AGIRNVKFRGPVYPGDKTLRIEVEIKKIRRREGGMAIFDGTAY--VDGELVAEAE 138 (138)
T ss_dssp EEEEEEEE-S-B-TTE-EEEEEEEEEEEEEEETTEEEEEEEEE--ETTEEEEEEE
T ss_pred ccccEEEECccEeCCCcEEEEEEEEEEeecccCCEEEEEEEEE--ECCEEEEEEC
Confidence 4466899999999999 9999999999 8999999999998 5689998863
No 60
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=97.37 E-value=0.0018 Score=50.90 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHhcccCC--ceeEEEEEEEEE-eecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCEEEEEEE
Q 031399 74 AIAAFSERMAIACARTVVAED--KEIFLGELGISY-LSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHA 150 (160)
Q Consensus 74 ~~~~l~D~~~~~~~~~~~~~~--~~~vT~~l~i~f-l~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva~a~~ 150 (160)
.++.++|........... .. ...+|++++|.| ..|...++++.++++....++-....+++|| +++|++||+++.
T Consensus 174 ~l~~~~D~~~~~~~~~~~-~~~~~~~~tld~ti~f~~~p~~~~~Wl~~~~~~~~~~~Gr~~~~~~l~-d~~G~lvA~~~Q 251 (255)
T PF13622_consen 174 ALAFLSDAFPPATLRAFS-GPEWWFPATLDHTIHFHRLPFDGDEWLLLEARSPRAGNGRALMEGRLW-DEDGRLVASSRQ 251 (255)
T ss_dssp HHHHHCTCCHHHHHHCHT-SS--B-EEEEEEEEEECSHCCTTTS-EEEEEEEEEEETTEEEEEEEEE-ETTS-EEEEEEE
T ss_pred HHHHHHHhcchhhccccC-CccccccccceeEEEEEeCCccCCceEEEEEEEeEeCCCEEEEEEEEE-CCCCCEEEEEEE
Confidence 377888887433333332 12 345599999997 5566668899999999999888899999999 899999999988
Q ss_pred EEEe
Q 031399 151 TFYN 154 (160)
Q Consensus 151 ~~~~ 154 (160)
..++
T Consensus 252 ~~lv 255 (255)
T PF13622_consen 252 EALV 255 (255)
T ss_dssp EEE-
T ss_pred EeeC
Confidence 7653
No 61
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=97.26 E-value=0.0073 Score=44.32 Aligned_cols=85 Identities=9% Similarity=0.039 Sum_probs=56.3
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcccCCce--eEEEEEEEEEeecCCCCCEEEEEEEEEEe---CC--cEEEEEEEEEEC
Q 031399 67 FGGIHGGAIAAFSERMAIACARTVVAEDKE--IFLGELGISYLSAAPHNAELIMEASVVRS---GR--NVTVVAVEFKFN 139 (160)
Q Consensus 67 ~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~--~vT~~l~i~fl~p~~~g~~v~~~a~v~~~---gr--~~~~~~~~i~~~ 139 (160)
.-++||-.+++++.....-. ....+.. ..-...+++|++|+.+|++|+++.+|... .+ ..++.++++...
T Consensus 56 ~~Ia~G~~t~sl~~~l~~~~---~~~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~~~~~~~ 132 (149)
T cd03450 56 GTIAHGFLTLSLLPALTPQL---FRVEGVKMGVNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVEIE 132 (149)
T ss_pred CeEECHHHHHHHHHHHHHhc---ccCCCceEEEEeeccEEEeCcceeCCcEEEEEEEEEEEEEcCCCeEEEEEEEEEEEe
Confidence 35689999888876643221 1111221 11234589999999999999999999743 22 377777777655
Q ss_pred CCCCEEEEEEEEEEe
Q 031399 140 DTGKLVCASHATFYN 154 (160)
Q Consensus 140 ~~g~lva~a~~~~~~ 154 (160)
...++++.++..++.
T Consensus 133 ~~~~p~~~~~~~~~~ 147 (149)
T cd03450 133 GEDKPACVAEWISRL 147 (149)
T ss_pred CCCCceEEEEEEEee
Confidence 667888777766543
No 62
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=97.22 E-value=0.01 Score=43.08 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=56.0
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCC-----CEEEEEEEEEEe--CCcEEEEEEEEEE
Q 031399 66 FFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHN-----AELIMEASVVRS--GRNVTVVAVEFKF 138 (160)
Q Consensus 66 ~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g-----~~v~~~a~v~~~--gr~~~~~~~~i~~ 138 (160)
+.-++||-..++++-.+..- .. + +...+ .+++++|.+|+.+| ++++++++|... ++..+.+++.+.
T Consensus 53 ~~~iahG~~~~a~~~~~~~~---~~-~-~~~~~-~~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~~~~~- 125 (142)
T PRK13693 53 DTAIAHGMLTMGLGGGYVTS---WV-G-DPGAV-TEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTAT- 125 (142)
T ss_pred CCcEecHHHHHHHHHHHHHH---hc-C-CCcce-EEEEEEecccEECCCCccceEEEEEEEEEEeccCCcEEEEEEEEE-
Confidence 34679999998888764322 12 2 22222 37899999999864 389999999854 667788888887
Q ss_pred CCCCCEEEEEEEEEE
Q 031399 139 NDTGKLVCASHATFY 153 (160)
Q Consensus 139 ~~~g~lva~a~~~~~ 153 (160)
+++++++..+++.+.
T Consensus 126 ~~~~~~~~~~~~~~~ 140 (142)
T PRK13693 126 TGGKKIFGRAIASAK 140 (142)
T ss_pred ECCcEEEEEEEEEEE
Confidence 556666777766654
No 63
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=97.09 E-value=0.043 Score=43.73 Aligned_cols=93 Identities=12% Similarity=0.117 Sum_probs=68.5
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcc-------------cCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEE
Q 031399 65 NFFGGIHGGAIAAFSERMAIACARTVV-------------AEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTV 131 (160)
Q Consensus 65 n~~g~vHGG~~~~l~D~~~~~~~~~~~-------------~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~ 131 (160)
+..|.+.=-.++.++-+++...+.... ..+...+-....+++.++...|++|++++.+...++-.+.
T Consensus 16 d~~~~l~l~~l~~~~qe~a~~h~~~lG~~~~~~~~~~~l~~~~~~Wvl~r~~i~i~r~P~~~e~i~i~Tw~~~~~~~~~~ 95 (261)
T PF01643_consen 16 DPNGRLKLSALLNYFQEAATEHAESLGFGMDYFGSTPELKKQGLAWVLSRYQIEIHRYPRWGEKITIETWPSGFKRFFAY 95 (261)
T ss_dssp -TTSBB-HHHHHHHHHHHHHHHHHHTT-SHHH------HHCTTEEEEEEEEEEEESS--BTT-EEEEEEEEEEE-SSEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCCcccchhhhhHhhcCcEEEEEEEEEEEEecCCCCCEEEEEEEeccCCCcEEE
Confidence 677888888888888777776554332 1233455678899999999999999999999999998888
Q ss_pred EEEEEEEC-CCCCEEEEEEEEEEecccC
Q 031399 132 VAVEFKFN-DTGKLVCASHATFYNTPIA 158 (160)
Q Consensus 132 ~~~~i~~~-~~g~lva~a~~~~~~~~~~ 158 (160)
=+.+++ + ++|+++++|+..+.++...
T Consensus 96 R~f~i~-d~~~G~~l~~a~s~WvliD~~ 122 (261)
T PF01643_consen 96 RDFEIY-DAEDGELLARATSIWVLIDLE 122 (261)
T ss_dssp EEEEEE---TTS-EEEEEEEEEEEEETT
T ss_pred EEEEEE-ECCCCcEEEEEEEEEEEEEhh
Confidence 888998 7 8999999999999988653
No 64
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=97.06 E-value=0.017 Score=46.76 Aligned_cols=86 Identities=13% Similarity=-0.004 Sum_probs=66.4
Q ss_pred CcccHHHHHHHHHHHH-HHHHHhcccC----CceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCC
Q 031399 68 GGIHGGAIAAFSERMA-IACARTVVAE----DKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTG 142 (160)
Q Consensus 68 g~vHGG~~~~l~D~~~-~~~~~~~~~~----~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g 142 (160)
..+|=.+++-+.|.-. ..++..+... .....+++-+|.|++|.+.++++..+.+....|....+.++++| +++|
T Consensus 192 ~~~~~~~lay~sD~~~l~~al~~~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a~~gr~~~~g~i~-~~~G 270 (286)
T PRK10526 192 LRVHQYLLGYASDLNFLPVALQPHGIGFLEPGMQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFY-TQDG 270 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccCCcceEEeeeEeEEEeCCCCCCceEEEEEECCcccCCceEEEEEEE-CCCC
Confidence 4688888887777532 3333333211 23456889999999999999999999999988888888999999 9999
Q ss_pred CEEEEEEEEEEe
Q 031399 143 KLVCASHATFYN 154 (160)
Q Consensus 143 ~lva~a~~~~~~ 154 (160)
++||++...-++
T Consensus 271 ~LvAs~~Qegl~ 282 (286)
T PRK10526 271 VLVASTVQEGVM 282 (286)
T ss_pred CEEEEEEeeEEE
Confidence 999999876544
No 65
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=97.03 E-value=0.0039 Score=44.13 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=37.7
Q ss_pred ceeEEEEEEEEEeecCCCCCEEEEEEEEEEe----C---CcEEEEEEEEEECCCCCEEEE
Q 031399 95 KEIFLGELGISYLSAAPHNAELIMEASVVRS----G---RNVTVVAVEFKFNDTGKLVCA 147 (160)
Q Consensus 95 ~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~----g---r~~~~~~~~i~~~~~g~lva~ 147 (160)
...+=.+.++.|.+|+++|++|+++++|... | ..++.++.+++ |++|++|++
T Consensus 73 ~~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~-~~~Ge~v~t 131 (132)
T PF13452_consen 73 TRLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYT-DQDGELVAT 131 (132)
T ss_dssp GGEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE--CTTEEEEE
T ss_pred hhEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEE-CCCCCEEEe
Confidence 4566678999999999999999999998533 2 23345577787 899999986
No 66
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=97.01 E-value=0.079 Score=38.96 Aligned_cols=84 Identities=8% Similarity=-0.023 Sum_probs=57.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccc--C--C-c--eeEEEEEEEEEeecCCCCC-EEEEEEEEEEeC----CcEEEEEEE
Q 031399 68 GGIHGGAIAAFSERMAIACARTVVA--E--D-K--EIFLGELGISYLSAAPHNA-ELIMEASVVRSG----RNVTVVAVE 135 (160)
Q Consensus 68 g~vHGG~~~~l~D~~~~~~~~~~~~--~--~-~--~~vT~~l~i~fl~p~~~g~-~v~~~a~v~~~g----r~~~~~~~~ 135 (160)
.++-|=.+.-.+-.++++.+..... . . . ......-+++|.+++.+|+ .|++++++.+.+ +.++.+++.
T Consensus 50 pvmPG~L~iEamaQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kfr~~v~Pgd~~l~~e~~i~~~~~~~~~~~~~~~~~ 129 (150)
T cd01287 50 PVMPGSLGLEAMIQLLQFYLIWLGLGTGVDNPRFQGAPGGPGEWKYRGQITPHNKKVTYEVHIKEVGRDGPRPYIIADAS 129 (150)
T ss_pred CcCchHHHHHHHHHHHHHHHhhcccccccCcccceeEeccceEEEECccCcCCCEEEEEEEEEEEEEccCCccEEEEEEE
Confidence 4555655555555555554433221 0 1 1 1123344799999999998 899999999886 499999999
Q ss_pred EEECCCCCEEEEEEEEEE
Q 031399 136 FKFNDTGKLVCASHATFY 153 (160)
Q Consensus 136 i~~~~~g~lva~a~~~~~ 153 (160)
++ -+|+++++++..-.
T Consensus 130 ~~--vdg~~v~~a~~~~~ 145 (150)
T cd01287 130 LW--VDGLRIYEAKDIAV 145 (150)
T ss_pred EE--ECCEEEEEEEccEE
Confidence 98 57999999876544
No 67
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=97.00 E-value=0.0052 Score=43.19 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=42.7
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEE
Q 031399 66 FFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEF 136 (160)
Q Consensus 66 ~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i 136 (160)
+.-++||-.+++++-....- .. +.........++++|++|+.+|++|.++++++......-.+.+++
T Consensus 49 ~~~ivhG~~~~a~~~~~~~~---~~-~~~~~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~~~~~~~~v~~ 115 (122)
T PF01575_consen 49 GGPIVHGMLTLALASGLLGD---WL-GPNPPARLGRFNVRFRAPVFPGDTLTAEVEVTEKREGKERVRVTV 115 (122)
T ss_dssp SSSB-BHHHHHHHHHHHHHH---HH-STTECEEEEEEEEEESS--BTTEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred CCEEEccHHHHHHHHHHHHH---hc-cCccceEEEEEEEEEeccccCCCEEEEEEEEEEEEEcCceEEEEE
Confidence 45789999999887653322 22 112234457899999999999999999999986533333333333
No 68
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=96.96 E-value=0.0032 Score=50.91 Aligned_cols=99 Identities=19% Similarity=0.310 Sum_probs=72.8
Q ss_pred eEEEEEeCCeEEEEEe-CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCC
Q 031399 49 IKVHKIQRGRLICHLS-NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGR 127 (160)
Q Consensus 49 l~~~~~~~g~~~~~~~-n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr 127 (160)
+.++.++++-.+..-+ -+.--++||.+++-+=.+ +....+.+..+ -++..-|++|.....+|....+.+|.||
T Consensus 12 L~Le~le~~lfrG~s~~~g~~~vFGGqvvaQAL~A----a~~TV~~~r~v--hSlh~yFl~pgd~~~pi~y~Ve~lRdG~ 85 (289)
T COG1946 12 LDLERLESNLFRGSSPDSGLRRVFGGQVVAQALVA----ALRTVPEDRVV--HSLHSYFLRPGDPEQPIIYDVERLRDGR 85 (289)
T ss_pred hhcccccccceecCCCCcCCccccccchHHHHHHH----HHhhcCCCCCc--ceehhhhcCCCCcCCceEEEEEeccCCC
Confidence 3444444443333333 345678899888766543 33333434333 4778899999999999999999999999
Q ss_pred cEEEEEEEEEECCCCCEEEEEEEEEEec
Q 031399 128 NVTVVAVEFKFNDTGKLVCASHATFYNT 155 (160)
Q Consensus 128 ~~~~~~~~i~~~~~g~lva~a~~~~~~~ 155 (160)
+...-+++.+ ++|++|..+++.|-+.
T Consensus 86 sfs~rrV~ai--Q~g~~If~~~ASF~~~ 111 (289)
T COG1946 86 SFSTRRVDAI--QHGKLIFSATASFQVP 111 (289)
T ss_pred ceEeEEEEEE--ECCEEEEEEEeeccCC
Confidence 9999999998 8899999999999764
No 69
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=96.96 E-value=0.027 Score=41.66 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=57.1
Q ss_pred cccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeC----CcEEEEEEEEEECCCCCE
Q 031399 69 GIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSG----RNVTVVAVEFKFNDTGKL 144 (160)
Q Consensus 69 ~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~g----r~~~~~~~~i~~~~~g~l 144 (160)
+.||-..++++=- +............--.--+++|.+|+.+|++|+++.++...- +.+..++.+.+ +++|++
T Consensus 69 iahG~~t~a~~~~---~~~~~~~~~~~~~~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~-~~~g~~ 144 (159)
T COG2030 69 IAHGMLTLALAMG---LVVAALGDPSVGANLGGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETV-NQEGEL 144 (159)
T ss_pred ehhHHHHHHHHHH---HHHHhccCcceeeeccccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEE-ccCCcE
Confidence 7788777665432 222222111111122355899999999999999999997542 26777888888 889999
Q ss_pred EEEEEEEEEecc
Q 031399 145 VCASHATFYNTP 156 (160)
Q Consensus 145 va~a~~~~~~~~ 156 (160)
+........+..
T Consensus 145 v~~~~~~~~~~~ 156 (159)
T COG2030 145 VLTLEATVLVLR 156 (159)
T ss_pred EEEEEEeEeEee
Confidence 988888876653
No 70
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=96.88 E-value=0.037 Score=40.64 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=48.5
Q ss_pred EEEEEEEeecCCCCCEEEEEEEEEEeC-CcEEEEEEEEEECCCCCEEEEEEEEEEeccc
Q 031399 100 GELGISYLSAAPHNAELIMEASVVRSG-RNVTVVAVEFKFNDTGKLVCASHATFYNTPI 157 (160)
Q Consensus 100 ~~l~i~fl~p~~~g~~v~~~a~v~~~g-r~~~~~~~~i~~~~~g~lva~a~~~~~~~~~ 157 (160)
.--++.|.+|+.+|+.+.++.++++.+ +......++.. -+|+++++++..++....
T Consensus 90 gid~~kF~~~V~PGd~l~l~~~~~~~~~~~~~~~~~~a~--Vdg~~v~~a~~~~~~~~~ 146 (147)
T COG0764 90 GIDNAKFKRPVLPGDQLELEVKLLKSRRLGIGKAKGVAT--VDGKVVAEAELLFAGVEK 146 (147)
T ss_pred EecceeecCccCCCCEEEEEEEEEEecccceEEEEEEEE--ECCEEEEEEEEEEEEeec
Confidence 344999999999999999999999998 88888888886 679999999999987653
No 71
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=96.84 E-value=0.018 Score=46.59 Aligned_cols=102 Identities=18% Similarity=0.269 Sum_probs=78.6
Q ss_pred cceEEEEEeCCeEEEEEe-----CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEE
Q 031399 47 RHIKVHKIQRGRLICHLS-----NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEAS 121 (160)
Q Consensus 47 ~gl~~~~~~~g~~~~~~~-----n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~ 121 (160)
.-++++.++++--+.+-. ++.+.++||.+++-+=.++ ..+. + ...+.-+|+..|++.+....+|.-..+
T Consensus 12 ~~l~l~~lD~n~f~~~~l~~g~~~~~~~~fGG~i~sQaLaAA---~~TV-~--e~f~p~SlH~YFI~~gd~~~pI~Y~V~ 85 (294)
T KOG3016|consen 12 TFLNLERLDKNLYLTRHLPKGREIPSNHAYGGQIASQALAAA---SKTV-E--EMFIPHSLHCYFILVGDPNIPIIYDVK 85 (294)
T ss_pred HhheeeecCCCceecccCCccccccCcccccceehHHHHHHH---Hhcc-c--cccccceeeeeeeecCCCCCceEEEee
Confidence 346677777775555533 6789999999887665543 3333 2 223346899999999999899999999
Q ss_pred EEEeCCcEEEEEEEEEECCCCCEEEEEEEEEEecc
Q 031399 122 VVRSGRNVTVVAVEFKFNDTGKLVCASHATFYNTP 156 (160)
Q Consensus 122 v~~~gr~~~~~~~~i~~~~~g~lva~a~~~~~~~~ 156 (160)
-+|.||+.++=.++.+ ++|++|.++...|-...
T Consensus 86 rirdGr~F~~R~V~Av--Q~~k~If~~qiSF~~~~ 118 (294)
T KOG3016|consen 86 RIRDGRNFATRSVDAV--QKGKTIFTLQISFQQSE 118 (294)
T ss_pred eecCCceeEEEEEEEE--ECCeEEEEEEEEEcccc
Confidence 9999999999999998 78999999999998443
No 72
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=96.80 E-value=0.028 Score=39.76 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=47.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCEEE
Q 031399 67 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVC 146 (160)
Q Consensus 67 ~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva 146 (160)
.-++||-.+++++..+..- ...+ +....-..++++|.+|+.+|++|+++.+. .++ .+.+++++. ++|+++.
T Consensus 44 ~~iahG~~t~a~~~~~~~~---~~~~-~~~~~~~~~~~rF~~PV~~gDtl~~~~~~--~~~-~v~~~~~~~--~~g~~v~ 114 (122)
T cd03448 44 RPILHGLCTYGFAARAVLE---AFAD-GDPARFKAIKVRFSSPVFPGETLRTEMWK--EGN-RVIFQTKVV--ERDVVVL 114 (122)
T ss_pred CceehhHHHHHHHHHHHHH---HhcC-CCcceeEEEEEEEcCCccCCCEEEEEEEE--eCC-EEEEEEEEc--cCCcEEE
Confidence 4678998888877654321 1111 22233356799999999999999998874 444 556677664 4677655
Q ss_pred EE
Q 031399 147 AS 148 (160)
Q Consensus 147 ~a 148 (160)
.+
T Consensus 115 ~g 116 (122)
T cd03448 115 SN 116 (122)
T ss_pred EC
Confidence 43
No 73
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=96.75 E-value=0.011 Score=53.27 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=57.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHhcccCCceeE-EEEEEEEEeecCCCCCEEEEEEEEEEeC------CcEEEEEEEEEECC
Q 031399 68 GGIHGGAIAAFSERMAIACARTVVAEDKEIF-LGELGISYLSAAPHNAELIMEASVVRSG------RNVTVVAVEFKFND 140 (160)
Q Consensus 68 g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~v-T~~l~i~fl~p~~~g~~v~~~a~v~~~g------r~~~~~~~~i~~~~ 140 (160)
-++||-..++++..... .. . .+.... ....+++|++|+++|++|+++.+|+... ..++.++++++ ++
T Consensus 574 ~Ia~G~l~~sl~~~l~~---~~-~-~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~-nq 647 (663)
T TIGR02278 574 RVAHGYFVLSAAAGLFV---DP-A-PGPVLANYGLENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVV-NQ 647 (663)
T ss_pred ceeCHHHHHHHHHHHhh---cc-C-ccchhhhcccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEE-cC
Confidence 48899988888854321 11 1 111111 1234899999999999999999997541 12778899998 88
Q ss_pred CCCEEEEEEEEEEe
Q 031399 141 TGKLVCASHATFYN 154 (160)
Q Consensus 141 ~g~lva~a~~~~~~ 154 (160)
+|++|.++...+++
T Consensus 648 ~G~~Vl~~~~~~lv 661 (663)
T TIGR02278 648 NGEPVATYDVLTLV 661 (663)
T ss_pred CCCEEEEEEEHHhc
Confidence 99999999877654
No 74
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=96.66 E-value=0.0093 Score=48.24 Aligned_cols=87 Identities=9% Similarity=0.043 Sum_probs=65.7
Q ss_pred CcccHHHHHHHHHHHHHHHH-Hhcc----cCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCC
Q 031399 68 GGIHGGAIAAFSERMAIACA-RTVV----AEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTG 142 (160)
Q Consensus 68 g~vHGG~~~~l~D~~~~~~~-~~~~----~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g 142 (160)
-.+|--.++-+-|......+ ..+. .++-.+++++=++-|+||.+.+++|....+.-........++++++ +++|
T Consensus 192 ~~~~~~lLay~SD~~ll~tal~~Hg~~~~~~~~~~aSLDHs~wFhrp~~~ddWlLy~~~sp~A~~~rgl~~G~lf-~r~G 270 (289)
T COG1946 192 PRLHQALLAYLSDFTLLDTALQPHGLGFLTPGIQVASLDHSMWFHRPFRLDDWLLYAQESPSASGGRGLVRGQLF-DRDG 270 (289)
T ss_pred HHHHHHHHHHhccchhhhhhhccCCCccccCcceEeeccceEEEeccccCCCEEEEEeeCCcccCCcceeeeEEE-cCCC
Confidence 56676677766666543332 2232 1344677889999999999999999999998888777888999999 8999
Q ss_pred CEEEEEEEEEEec
Q 031399 143 KLVCASHATFYNT 155 (160)
Q Consensus 143 ~lva~a~~~~~~~ 155 (160)
+|+|.....-.+.
T Consensus 271 ~LiA~~~QEG~~r 283 (289)
T COG1946 271 QLIASVVQEGLIR 283 (289)
T ss_pred CEEEEEeeeEEEe
Confidence 9999887655544
No 75
>PLN02868 acyl-CoA thioesterase family protein
Probab=96.54 E-value=0.021 Score=48.39 Aligned_cols=83 Identities=10% Similarity=0.041 Sum_probs=64.6
Q ss_pred CcccHHHHHHHHHHHHHHHH-HhcccCCc--eeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCE
Q 031399 68 GGIHGGAIAAFSERMAIACA-RTVVAEDK--EIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKL 144 (160)
Q Consensus 68 g~vHGG~~~~l~D~~~~~~~-~~~~~~~~--~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~l 144 (160)
..+|-.+++-+.|......+ ..+...+. ..++++-++.|++|.+.++++..+.+....+......++++| +++|++
T Consensus 325 ~~~~~a~lay~sD~~~l~~~l~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~l~~~~s~~a~~gr~~~~g~l~-~~~G~L 403 (413)
T PLN02868 325 QALHRCVAAYASDLIFLGTSLNPHRTKGLKFAALSLDHSMWFHRPFRADDWLLFVIVSPAAHNGRGFATGHMF-NRKGEL 403 (413)
T ss_pred HHHHHHHHHHHhhhhhhHhhhccccCCCCceEEEEcceeEEEecCCCCCceEEEEEECCccCCCcceEEEEEE-CCCCCE
Confidence 46788889999997544333 22221122 256788899999999999999999999999888888899999 999999
Q ss_pred EEEEEEE
Q 031399 145 VCASHAT 151 (160)
Q Consensus 145 va~a~~~ 151 (160)
||+...-
T Consensus 404 vAs~~Qe 410 (413)
T PLN02868 404 VVSLTQE 410 (413)
T ss_pred EEEEEee
Confidence 9988653
No 76
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=96.38 E-value=0.061 Score=44.87 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=69.6
Q ss_pred CCCCcccHH-HHHHHHHHHHHHHHHhcccC-----C--ceeEEEEE-EEEEeecCCCC-CEEEEEEEEEEeCCcEEEEEE
Q 031399 65 NFFGGIHGG-AIAAFSERMAIACARTVVAE-----D--KEIFLGEL-GISYLSAAPHN-AELIMEASVVRSGRNVTVVAV 134 (160)
Q Consensus 65 n~~g~vHGG-~~~~l~D~~~~~~~~~~~~~-----~--~~~vT~~l-~i~fl~p~~~g-~~v~~~a~v~~~gr~~~~~~~ 134 (160)
|..|..|+| -+.-|+|++..++.+.+... . ..+||+.. .|+|.+|...| ..+.+.|.|...|++++.+.+
T Consensus 21 ~~s~~~~~~prigk~lE~ld~~a~~~hc~~~~~~~~~p~~~VtAsV~~i~f~~~~~~~~~d~i~~a~Vt~a~~sSMEv~i 100 (357)
T KOG2763|consen 21 NHSGNTFVGPRIGKILEDLDALAVYRHCSEAEEGATLPRTIVTASVDRIDFEKPSEVGQVDIIIVAKVTWAGKSSMEVSI 100 (357)
T ss_pred ccccceecchHHHHHHHHhhhhhheeecccccccCccceEEEEeeEEEEEeeccccccceeEEEEEEEEeccccceEEEE
Confidence 777999999 69999999887776543321 1 34566644 59999987766 578888999999999999999
Q ss_pred EEEE--CC--CCCEEEEEEEEEEecc
Q 031399 135 EFKF--ND--TGKLVCASHATFYNTP 156 (160)
Q Consensus 135 ~i~~--~~--~g~lva~a~~~~~~~~ 156 (160)
.+.. .. +..++.+|..+|...+
T Consensus 101 ~V~q~~~~~~~~~~~~kA~f~fVard 126 (357)
T KOG2763|consen 101 YVMQEDLATGEKSLVLKATFTFVARD 126 (357)
T ss_pred EEEEehhccchhhheeeeEEEEEEec
Confidence 9986 12 3357788888887663
No 77
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=96.31 E-value=0.027 Score=50.87 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=55.6
Q ss_pred CcccHHHHHHHHHHHHHHHHHhcccCCceeEE-EEEEEEEeecCCCCCEEEEEEEEEEeC------CcEEEEEEEEEECC
Q 031399 68 GGIHGGAIAAFSERMAIACARTVVAEDKEIFL-GELGISYLSAAPHNAELIMEASVVRSG------RNVTVVAVEFKFND 140 (160)
Q Consensus 68 g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT-~~l~i~fl~p~~~g~~v~~~a~v~~~g------r~~~~~~~~i~~~~ 140 (160)
-++||-..++++-.... . ..+ ...... ..-+++|.+|+.+|++|+++.+|.... ..++.++++++ ++
T Consensus 586 ~ia~G~l~~sl~~~l~~---~-~~~-~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~-nq 659 (675)
T PRK11563 586 RVAHGYFVLSAAAGLFV---D-PAP-GPVLANYGLENLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVT-NQ 659 (675)
T ss_pred ceeCHHHHHHHHHHHhh---c-cCc-cchhhhcccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEE-EC
Confidence 47888887777654321 1 111 111111 113799999999999999999998652 24788899998 78
Q ss_pred CCCEEEEEEEEEEe
Q 031399 141 TGKLVCASHATFYN 154 (160)
Q Consensus 141 ~g~lva~a~~~~~~ 154 (160)
+|++|.++...+++
T Consensus 660 ~G~~V~~~~~~~lv 673 (675)
T PRK11563 660 DGELVATYDILTLV 673 (675)
T ss_pred CCCEEEEEEEHHhc
Confidence 99999998876654
No 78
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=96.12 E-value=0.29 Score=34.65 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=54.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhcc--cCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeC-----CcEEEEEEEEEECCC
Q 031399 69 GIHGGAIAAFSERMAIACARTVV--AEDKEIFLGELGISYLSAAPHNAELIMEASVVRSG-----RNVTVVAVEFKFNDT 141 (160)
Q Consensus 69 ~vHGG~~~~l~D~~~~~~~~~~~--~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~g-----r~~~~~~~~i~~~~~ 141 (160)
-+.|=.++-.+=.++.+...... +.+...+-.+++++|.+++..+.++.++.++.... .+-..++++++ ++
T Consensus 42 h~~gmll~Ea~RQa~~~~~h~~~~vp~~~~~~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~--q~ 119 (132)
T PF03756_consen 42 HVPGMLLLEAARQAGIALAHRFYGVPLDHQFVLTSLDFTFSRFAELDVPADLTVRITCRDRRGGRPRGLRFRVTVS--QG 119 (132)
T ss_pred ccChHHHHHHHHHHHHHhhccccCCCCCceEEEEEEEEEEccccccCCCEEEEEEEEeccccCCccceEEEEEEEE--EC
Confidence 34444444344444444333322 23344556799999999998777888887776433 34667788887 78
Q ss_pred CCEEEEEEEEEE
Q 031399 142 GKLVCASHATFY 153 (160)
Q Consensus 142 g~lva~a~~~~~ 153 (160)
|+++++++.++-
T Consensus 120 g~~~a~~~~~~t 131 (132)
T PF03756_consen 120 GRVVATASMTFT 131 (132)
T ss_pred CEEEEEEEEEEE
Confidence 999999998875
No 79
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=95.97 E-value=0.47 Score=35.59 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=38.9
Q ss_pred EEEEEeecCCCCCEE-EEEEEEEEe---CCcEEEEEEEEEECCCCCEEEEEEE
Q 031399 102 LGISYLSAAPHNAEL-IMEASVVRS---GRNVTVVAVEFKFNDTGKLVCASHA 150 (160)
Q Consensus 102 l~i~fl~p~~~g~~v-~~~a~v~~~---gr~~~~~~~~i~~~~~g~lva~a~~ 150 (160)
-+.+|.+++.+|+.+ +++.++.+. .+.+..++++++ -+|++|++++-
T Consensus 107 ~~~kfr~~v~Pgd~~~~l~v~i~~~~~~~~~~~~~~~~i~--v~g~~va~a~~ 157 (169)
T TIGR01749 107 GEVKFTGQVLPTAKKVTYRIHFKRVINRRLVMGIADGEVL--VDGRLIYTASD 157 (169)
T ss_pred cEEEEccCEecCCeEEEEEEEEEEEeecCCcEEEEEEEEE--ECCEEEEEEEC
Confidence 389999999999886 888888774 456899999998 67899998653
No 80
>PLN02864 enoyl-CoA hydratase
Probab=95.91 E-value=0.16 Score=41.69 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=50.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCEEE
Q 031399 67 FGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVC 146 (160)
Q Consensus 67 ~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva 146 (160)
.-++||-+.++++-.+. +....+ +....-.+++++|.+|+.+|++|+++.+. .+ ..+.+++.+ +++|+++.
T Consensus 227 ~~IaHGm~t~g~~~~~~---~~~~~~-~~~~~~~~~~~rF~~PV~pGdtl~~~~~~--~~-~~v~~~~~~--~~~g~~vl 297 (310)
T PLN02864 227 RPILHGLCTLGFAVRAV---IKCFCN-GDPTAVKTISGRFLLHVYPGETLVTEMWL--EG-LRVIYQTKV--KERNKAVL 297 (310)
T ss_pred CceeccHHHHHHHHHHH---HhhhcC-CCCceEEEEEEEEcCCccCCCEEEEEEEe--CC-CEEEEEEEE--ecCCeEEE
Confidence 46799977777654422 111111 11122357899999999999999877653 34 345566666 46788888
Q ss_pred EEEEEEE
Q 031399 147 ASHATFY 153 (160)
Q Consensus 147 ~a~~~~~ 153 (160)
.+..++.
T Consensus 298 ~G~a~~~ 304 (310)
T PLN02864 298 SGYVDLR 304 (310)
T ss_pred EEEEEEe
Confidence 8877765
No 81
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=95.81 E-value=0.56 Score=35.27 Aligned_cols=49 Identities=10% Similarity=0.115 Sum_probs=40.7
Q ss_pred EEEEEEEeecCCCCCE-EEEEEEEEEe---CCcEEEEEEEEEECCCCCEEEEEEE
Q 031399 100 GELGISYLSAAPHNAE-LIMEASVVRS---GRNVTVVAVEFKFNDTGKLVCASHA 150 (160)
Q Consensus 100 ~~l~i~fl~p~~~g~~-v~~~a~v~~~---gr~~~~~~~~i~~~~~g~lva~a~~ 150 (160)
..-+.+|.+++.+|+. ++++.++.+. .+.+..++++++ -+|+++++++-
T Consensus 108 g~~~~kfr~~v~Pgd~~l~l~v~i~~~~~~~~~~~~~~~~i~--v~g~~va~a~~ 160 (172)
T PRK05174 108 GVGEVKFTGQVLPTAKKVTYEIDIKRVINRKLVMGIADGRVL--VDGEEIYTAKD 160 (172)
T ss_pred eccEEEECccCcCCCEEEEEEEEEEEEecCCCCEEEEEEEEE--ECCEEEEEEEe
Confidence 3457999999999988 8999988885 467899999998 56899999843
No 82
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=95.79 E-value=0.095 Score=37.75 Aligned_cols=56 Identities=13% Similarity=0.032 Sum_probs=43.8
Q ss_pred ceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCEEEEEEE
Q 031399 95 KEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHA 150 (160)
Q Consensus 95 ~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva~a~~ 150 (160)
...+|++=++=|++|.+.++++....+--+.......++++++++++|++||++..
T Consensus 73 ~~~vSlDHs~wFHrpfr~ddWlLY~~~sp~A~~~Rgl~~G~~f~~q~G~Lvas~~Q 128 (131)
T PF02551_consen 73 KFQVSLDHSMWFHRPFRADDWLLYAIESPSASGGRGLVRGRFFDTQDGELVASVVQ 128 (131)
T ss_dssp CEEEEEEEEEEE-S--BTTS-EEEEEEEEEEETTEEEEEECCEEECTTEEEEEEEE
T ss_pred ccEEecceeEEEcCCCCCCCCEEEEEEcCccccCcccccCceEecCCCCEEEEEec
Confidence 34458999999999999999999888887777777889999997789999998653
No 83
>PLN02864 enoyl-CoA hydratase
Probab=94.98 E-value=0.27 Score=40.35 Aligned_cols=61 Identities=18% Similarity=0.299 Sum_probs=46.7
Q ss_pred eeEEEEEEEEEeecCCCCCEEEEEEEEEEe---CC-cEEEEEEEEEECCCCCEEEEEEEEEEecc
Q 031399 96 EIFLGELGISYLSAAPHNAELIMEASVVRS---GR-NVTVVAVEFKFNDTGKLVCASHATFYNTP 156 (160)
Q Consensus 96 ~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~---gr-~~~~~~~~i~~~~~g~lva~a~~~~~~~~ 156 (160)
.++=.+-++.|.||++.++.+++++++... |+ .++.++.++...++|+++++.+.++++..
T Consensus 93 ~lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~Rg 157 (310)
T PLN02864 93 LLLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFLRG 157 (310)
T ss_pred heeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEEeC
Confidence 455567789999999999999999998644 32 23556777763368999999999988753
No 84
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=92.70 E-value=0.69 Score=37.59 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=62.0
Q ss_pred CCcccHHHHHHHHHHHHHHHH-HhcccCCc--eeEEEEEEEEEeec-CCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCC
Q 031399 67 FGGIHGGAIAAFSERMAIACA-RTVVAEDK--EIFLGELGISYLSA-APHNAELIMEASVVRSGRNVTVVAVEFKFNDTG 142 (160)
Q Consensus 67 ~g~vHGG~~~~l~D~~~~~~~-~~~~~~~~--~~vT~~l~i~fl~p-~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g 142 (160)
--.+|--+++-+-|..+...+ +.+...+. ..++++=+|-|+++ .++++++.-++.....++...++++++| +++|
T Consensus 207 D~r~h~~~vaylSD~~ll~Ta~~~h~~~g~~s~~~SLdHsiwfH~~e~~iddwilye~~s~~a~~sr~~i~Grlw-~rdG 285 (294)
T KOG3016|consen 207 DERLHRWVVAYLSDLILLTTALNPHNREGMSSMALSLDHSIWFHRPEVRADDWLLYECVSPIATGSRGFIEGKLW-NRDG 285 (294)
T ss_pred hhhhceehHhhhhhHHHHHhcccchhhccceeeecccceeEEEecccccccceEEEEEEeccccCcceeEeeeEE-ccCC
Confidence 355677788888888654433 33322222 33566778999998 8999999999999999999999999999 7999
Q ss_pred CEEEEE
Q 031399 143 KLVCAS 148 (160)
Q Consensus 143 ~lva~a 148 (160)
++++..
T Consensus 286 ~l~~s~ 291 (294)
T KOG3016|consen 286 RLICST 291 (294)
T ss_pred cEEEEe
Confidence 999865
No 85
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=92.06 E-value=3 Score=32.87 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhc---ccCCceeE-EEEEEEEEee-cCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCEEEEEEEE
Q 031399 77 AFSERMAIACARTV---VAEDKEIF-LGELGISYLS-AAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHAT 151 (160)
Q Consensus 77 ~l~D~~~~~~~~~~---~~~~~~~v-T~~l~i~fl~-p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva~a~~~ 151 (160)
+++|.+.-.+.... .......+ ..-=++.+.+ |.+.++.+.+.++..+.+.....+++.++ |++|++++..++.
T Consensus 206 ~llD~~lq~~~~~~~~~~~~~~~~lP~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~v~-d~~G~~~~~~~gl 284 (295)
T PF14765_consen 206 ALLDAALQAAGLALWEDDDRGRVFLPVSIERIRIFRAPPPPGDRLYVYARLVKSDDDTITGDVTVF-DEDGRVVAELEGL 284 (295)
T ss_dssp HHHHHHHHGHGCCHTSTTTTTSEEEEEEEEEEEESSS--SSTSEEEEEEEEESTTTTEEEEEEEEE-ETTSBEEEEEEEE
T ss_pred HHHHHHHHHHHHHhccccCCCCEEcccEeCEEEEEeccCCCCCEEEEEEEEecccceEEEEEEEEE-CCCCCEEEEEccE
Confidence 56777655331111 11222222 3333688884 66778999999999888889999999999 8999999988776
Q ss_pred EEe
Q 031399 152 FYN 154 (160)
Q Consensus 152 ~~~ 154 (160)
.+.
T Consensus 285 ~~~ 287 (295)
T PF14765_consen 285 TFR 287 (295)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 86
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=90.58 E-value=3.7 Score=32.49 Aligned_cols=61 Identities=7% Similarity=-0.032 Sum_probs=53.2
Q ss_pred ceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCEEEEEEEEEEeccc
Q 031399 95 KEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFYNTPI 157 (160)
Q Consensus 95 ~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva~a~~~~~~~~~ 157 (160)
...+.....+.+.||...++.++++.++....+.-|..++++. + .|..+....+.|+++..
T Consensus 54 l~WiV~~~~i~~ir~pef~e~iti~t~~~s~~~ffcyrrf~~~-~-~gg~Lie~~a~wilmn~ 114 (250)
T COG3884 54 LLWIVRRTEIDVIRPPEFGEMITIETWCSSISNFFCYRRFRLD-G-RGGGLIEIEAFWILMNR 114 (250)
T ss_pred ceEEEEEEEEEEeeccccCCcceEEEeeccccceEEEEEEEEe-c-CCCcEEEEEEEEEEEcc
Confidence 3445679999999999999999999999999999999999998 5 77778888888888754
No 87
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=89.86 E-value=3.7 Score=32.56 Aligned_cols=82 Identities=10% Similarity=0.133 Sum_probs=54.1
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEe-CCcEEEEEEEEEECCCCC
Q 031399 65 NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRS-GRNVTVVAVEFKFNDTGK 143 (160)
Q Consensus 65 n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~-gr~~~~~~~~i~~~~~g~ 143 (160)
+..|-|+--.+..++-++....... ... -.++.|+|.+.++.|+.|.+...+... +.....+.-.|. .++|+
T Consensus 178 D~N~HVNN~~Yl~w~~d~lp~~~~~----~~~--~~~i~I~y~~E~~~gd~i~~~~~~~~~~~~~~~~~~h~i~-~~~g~ 250 (261)
T PF01643_consen 178 DMNGHVNNARYLDWALDALPEEFLE----KYQ--IKSIDINYKKEIRYGDTITSYTEVEKDEEEDGLSTLHEIR-NEDGE 250 (261)
T ss_dssp ETTTCE-HHHHHHHHHCCS-HHHHC----CEE--EEEEEEEE-S--BTT-EEEEEEEEEEECCTTEEEEEEEEE-CT-TC
T ss_pred CCCCCcCHHHHHHHHHHhCcchhhc----cCC--cEEEEEEEccccCCCCEEEEEEEEcccccCCceEEEEEEE-cCCCc
Confidence 6778888888888876644332221 122 358999999999999999999887544 445556677787 55599
Q ss_pred EEEEEEEEEE
Q 031399 144 LVCASHATFY 153 (160)
Q Consensus 144 lva~a~~~~~ 153 (160)
.+|+++..+.
T Consensus 251 ~~~~~~~~W~ 260 (261)
T PF01643_consen 251 EVARARTEWQ 260 (261)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEEEEEc
Confidence 9999987763
No 88
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=70.24 E-value=38 Score=35.78 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=47.0
Q ss_pred EEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCEEEEEEEEEEec
Q 031399 100 GELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATFYNT 155 (160)
Q Consensus 100 ~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva~a~~~~~~~ 155 (160)
.--++...+|.+.|+...+..++++...+...+++.++ +++|++++.-.+.-..+
T Consensus 2519 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~-~~~g~~~~~~~~~~~~~ 2573 (2582)
T TIGR02813 2519 SIGEFVSYRPVSLGEKFYLKLDVVKSSGRSLVANIELY-HQDGRLSSEMKSAKVTI 2573 (2582)
T ss_pred ccceEEEecCCCCCCceEEEEEEEeccCCeEEEEEEEE-CCCCcEEEEEeCCeEEE
Confidence 34477888888889999999999999999999999999 99999998877655543
No 89
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=68.65 E-value=54 Score=26.12 Aligned_cols=59 Identities=10% Similarity=0.110 Sum_probs=42.7
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcE
Q 031399 65 NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNV 129 (160)
Q Consensus 65 n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~ 129 (160)
+.+|-+..-.+-.++.+..+.-.... .. ...+++.|.+|+..|+.|++..++...+.+=
T Consensus 165 D~f~HvNNskY~~wi~e~l~~~~~~~----~~--p~r~~l~y~keva~G~~iti~~e~~~~~s~~ 223 (250)
T COG3884 165 DMFGHVNNSKYWSWIEEVLGSEFLKL----YG--PLRLTLEYVKEVAPGEKITIVYEVHPLESKH 223 (250)
T ss_pred ccccccccceehHHHHHHHhhhhHhh----cc--cceeEEEEEcccCCCCeEEEEEEEcccCcee
Confidence 56677777777777777665433332 11 2578999999999999999999997666543
No 90
>PLN02370 acyl-ACP thioesterase
Probab=60.71 E-value=1.1e+02 Score=26.37 Aligned_cols=84 Identities=8% Similarity=0.047 Sum_probs=54.1
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEE-----Ee-CCcEEEEEEEEEE
Q 031399 65 NFFGGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVV-----RS-GRNVTVVAVEFKF 138 (160)
Q Consensus 65 n~~g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~-----~~-gr~~~~~~~~i~~ 138 (160)
+.+|.|.-..+..++-+..-.-... ... ...++|+|.+.++.|+.|.....+. .. ......+...+.
T Consensus 314 D~NgHVNNvkYi~Wild~lP~e~l~----~~~--l~~i~I~Y~kE~~~gd~V~s~~~~~~~~~~~~~~~~~~~~~h~~~- 386 (419)
T PLN02370 314 DVNQHVNNVKYIGWILESAPPPIME----SHE--LAAITLEYRRECGRDSVLQSLTAVSGTGIGNLGTAGDVECQHLLR- 386 (419)
T ss_pred cccCccccHHHHHHHHhhCchhhhh----cce--EEEEEEEEcccCCCCCEEEEEEeecccccccccCCCcceEEEEEE-
Confidence 6677788888887776533322111 122 3589999999999999999876642 11 111112333444
Q ss_pred CCCCCEEEEEEEEEEec
Q 031399 139 NDTGKLVCASHATFYNT 155 (160)
Q Consensus 139 ~~~g~lva~a~~~~~~~ 155 (160)
.++|+.++.++..+.-.
T Consensus 387 ~~dG~e~a~a~t~Wr~~ 403 (419)
T PLN02370 387 LEDGAEIVRGRTEWRPK 403 (419)
T ss_pred cCCCeEEEEEEEEEEEC
Confidence 68899999999887644
No 91
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=58.02 E-value=32 Score=22.79 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=24.9
Q ss_pred EEEEeecCCCCCEE----EEEEEEEEeCCcEEEEEEEEEECCCCCEEEEEEEE
Q 031399 103 GISYLSAAPHNAEL----IMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHAT 151 (160)
Q Consensus 103 ~i~fl~p~~~g~~v----~~~a~v~~~gr~~~~~~~~i~~~~~g~lva~a~~~ 151 (160)
+|.-..|.+ |+.| ++.++-.- --..+..+|. |.+|++++.+..+
T Consensus 2 ~I~V~~P~p-g~~V~sp~~V~G~A~~---FEgtv~~rv~-D~~g~vl~e~~~~ 49 (88)
T PF10648_consen 2 NIWVTAPAP-GDTVSSPVKVSGKARV---FEGTVNIRVR-DGHGEVLAEGFVT 49 (88)
T ss_pred ceEEcCCCC-cCCcCCCEEEEEEEEE---eeeEEEEEEE-cCCCcEEEEeeEE
Confidence 466667776 4444 44444221 1123566776 8889988555443
No 92
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=41.50 E-value=1.2e+02 Score=21.98 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=31.5
Q ss_pred CCEEEEEEEEEEeCCcEEEEEEEEEECCCCCEEEEEEEEE
Q 031399 113 NAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHATF 152 (160)
Q Consensus 113 g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva~a~~~~ 152 (160)
|-.+.+.+.|-|..+-+..+.+.++.-++|+++......+
T Consensus 80 GAd~~lvG~VqKvS~Lil~~~~~v~Dv~tg~~v~~~~~di 119 (140)
T PF11684_consen 80 GADYVLVGEVQKVSNLILNMNVYVRDVETGKVVRGRSVDI 119 (140)
T ss_pred CCCEEEEEEEechhhhheeeeEEEEECCCCCEEeeeeeeE
Confidence 5567788888888888888888888557888888776654
No 93
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=40.34 E-value=76 Score=25.54 Aligned_cols=74 Identities=19% Similarity=0.153 Sum_probs=50.6
Q ss_pred CCC-CcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCC
Q 031399 65 NFF-GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGK 143 (160)
Q Consensus 65 n~~-g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~ 143 (160)
|.. =++||-.+++++=.++- ...+ +. -..+...=++|+-.++++++.+.....|+--.+ .. +.++.
T Consensus 198 gYpgLVvhGPl~atlll~~~~----~~~p--q~--~~Rf~fR~L~p~f~~~~lti~~~l~~~g~~~~w----~~-~~~~p 264 (273)
T COG3777 198 GYPGLVVHGPLIATLLLRAFQ----PFLP--QP--IRRFRFRNLSPAFPNETLTICGSLSGSGGAELW----TI-RGDGP 264 (273)
T ss_pred CCCCceecchHHHHHHHHHhh----hhcc--cc--chheeccccccccCCCCeeEeeEecCCCceEEE----Ee-cCCcc
Confidence 544 57899999998877332 2211 22 357788889999999999999999877653322 11 45677
Q ss_pred EEEEEEEE
Q 031399 144 LVCASHAT 151 (160)
Q Consensus 144 lva~a~~~ 151 (160)
+..+|+..
T Consensus 265 v~mrarV~ 272 (273)
T COG3777 265 VAMRARVF 272 (273)
T ss_pred hhheeeec
Confidence 77777654
No 94
>PF13313 DUF4082: Domain of unknown function (DUF4082)
Probab=34.79 E-value=1.9e+02 Score=21.34 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=34.1
Q ss_pred EEEEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCEEEEEEEE
Q 031399 99 LGELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHAT 151 (160)
Q Consensus 99 T~~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva~a~~~ 151 (160)
.++|-++|..-+. | .|+..---...+.+-. -.+.|| ..+|+++|+++.+
T Consensus 18 ~vELG~kF~~~~~-G-~vtgvrfYk~~~ntgt-htgsLW-sa~G~lLAt~tft 66 (149)
T PF13313_consen 18 AVELGVKFRSSVA-G-QVTGVRFYKGAGNTGT-HTGSLW-SADGTLLATATFT 66 (149)
T ss_pred ceEEEeEEEecCC-c-EEEEEEEEeCCCCCCc-eEEEEE-CCCCCEEEEEEEc
Confidence 4688999988886 4 5555433333344433 488999 8999999988754
No 95
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=33.24 E-value=1.8e+02 Score=20.82 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=30.9
Q ss_pred EEEEEEEeecCCCCCEEEEEEEEEEeC--CcEEEEEEEEE
Q 031399 100 GELGISYLSAAPHNAELIMEASVVRSG--RNVTVVAVEFK 137 (160)
Q Consensus 100 ~~l~i~fl~p~~~g~~v~~~a~v~~~g--r~~~~~~~~i~ 137 (160)
..++|.|-.|++.|+++++.-+-++.- .-+..+.+.++
T Consensus 89 ~~i~I~f~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 89 RTITITFDEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CEEEEEeCCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 468899999999999999999777553 35677788887
No 96
>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []. This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.
Probab=32.19 E-value=1.8e+02 Score=20.39 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=26.3
Q ss_pred EEEEEEeecCCCCCEEEEEEEEEEeCCcEEEEEEEEEECCCCCE
Q 031399 101 ELGISYLSAAPHNAELIMEASVVRSGRNVTVVAVEFKFNDTGKL 144 (160)
Q Consensus 101 ~l~i~fl~p~~~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~l 144 (160)
++.++-+.| ++.|++.++.....+......+...+|++|.+
T Consensus 6 ~I~v~GL~p---~~~vtl~a~~~~~~g~~w~S~A~f~Ad~~G~V 46 (126)
T PF04775_consen 6 DIRVSGLPP---GQEVTLRARLTDDNGVQWQSYATFRADENGIV 46 (126)
T ss_dssp EEEEES--T---T-EEEEEEEEE-TTS-EEEEEEEEE--TTS-E
T ss_pred EEEEeCCCC---CCEEEEEEEEEeCCCCEEEEEEEEEcCCCCeE
Confidence 455555555 56999999999887888888888888888875
No 97
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=29.67 E-value=82 Score=19.13 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.7
Q ss_pred CCCChHHHHHHHHHHHhhCCCC
Q 031399 8 KEVDPEDVSKVIVFLKEVGASS 29 (160)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~ 29 (160)
.+++||.-+++-+||+...+.-
T Consensus 2 ~rL~pEDQ~~Vd~yL~a~~~~V 23 (55)
T PF11293_consen 2 SRLNPEDQQRVDEYLQAGVNQV 23 (55)
T ss_pred CCCCHHHHHHHHHHHhCCCCcc
Confidence 4789999999999998887653
No 98
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=28.38 E-value=93 Score=20.24 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=10.1
Q ss_pred CCcEEEEEEEEEECCCCCEEEEEE
Q 031399 126 GRNVTVVAVEFKFNDTGKLVCASH 149 (160)
Q Consensus 126 gr~~~~~~~~i~~~~~g~lva~a~ 149 (160)
|....++.+++. |++|.++....
T Consensus 16 g~d~~~i~v~v~-D~~Gnpv~~~~ 38 (92)
T smart00634 16 GSDAITLTATVT-DANGNPVAGQE 38 (92)
T ss_pred CcccEEEEEEEE-CCCCCCcCCCE
Confidence 344444444444 44444443333
No 99
>TIGR03786 strep_pil_rpt streptococcal pilin isopeptide linkage domain. This model describes a domain that occurs once in the major pilin of Streptococcus pyogenes, Spy0128, but in higher copy numbers in other streptococcal proteins. The domain occurs nine times in a surface-anchored protein of Bifidobacterium longum. All members of this family have LPXTG-type sortase target sequences. The S. pyogenes major pilin has been shown to undergo isopeptide bond cross-linking, mediated by sortases, that are critical to maintaining pilus structural integrity. One such Lys-to-Asn isopeptide bond is to a near-invariant Asn near the C-terminal end of this domain (column 81 of the seed alignment). A Glu in the S. pyogenes major pilin (column 25 of the seed alignment), invariant as Glu or Gln, is described as catalytic for isopeptide bond formation.
Probab=28.34 E-value=1.5e+02 Score=18.33 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=17.5
Q ss_pred CCcEEEEEEEEEECCCCCEEEEEE
Q 031399 126 GRNVTVVAVEFKFNDTGKLVCASH 149 (160)
Q Consensus 126 gr~~~~~~~~i~~~~~g~lva~a~ 149 (160)
..+...+.+.+..+.+|+|+|...
T Consensus 29 D~~~~~vtV~V~~~~~G~L~A~v~ 52 (64)
T TIGR03786 29 DTTVHTVTVTVTDDEQGKLVATVI 52 (64)
T ss_pred cCCEEEEEEEEEECCCCcEEEEEE
Confidence 355667888888667899987654
No 100
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=28.05 E-value=1.5e+02 Score=18.39 Aligned_cols=35 Identities=11% Similarity=-0.014 Sum_probs=23.3
Q ss_pred EEEEEEEEEeCCcEEEEEEEEEECCCCCEEEEEEEE
Q 031399 116 LIMEASVVRSGRNVTVVAVEFKFNDTGKLVCASHAT 151 (160)
Q Consensus 116 v~~~a~v~~~gr~~~~~~~~i~~~~~g~lva~a~~~ 151 (160)
-+.-+...-.....-.++++|. +++|++++.....
T Consensus 30 ~Rt~S~k~~~~~~~G~WrV~V~-~~~G~~l~~~~F~ 64 (66)
T PF11141_consen 30 WRTWSSKQNFPDQPGDWRVEVV-DEDGQVLGSLRFS 64 (66)
T ss_pred EEEEEEeecCCCCCcCEEEEEE-cCCCCEEEEEEEE
Confidence 3333433333346666999998 8999999877654
No 101
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=27.23 E-value=1.9e+02 Score=19.18 Aligned_cols=40 Identities=23% Similarity=0.401 Sum_probs=28.5
Q ss_pred CCCEEEEEEEEEEeCCcEEEEEEEEEECCCCC----EEEEEEEEE
Q 031399 112 HNAELIMEASVVRSGRNVTVVAVEFKFNDTGK----LVCASHATF 152 (160)
Q Consensus 112 ~g~~v~~~a~v~~~gr~~~~~~~~i~~~~~g~----lva~a~~~~ 152 (160)
+..+..+.++|.+.|.-+.-.-+.+. |.+|+ +++.+++.|
T Consensus 4 ~~ke~VItG~V~~~G~Pv~gAyVRLL-D~sgEFtaEvvts~~G~F 47 (85)
T PF07210_consen 4 VEKETVITGRVTRDGEPVGGAYVRLL-DSSGEFTAEVVTSATGDF 47 (85)
T ss_pred ccceEEEEEEEecCCcCCCCeEEEEE-cCCCCeEEEEEecCCccE
Confidence 45678889999988888877778887 77776 444444444
No 102
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=26.73 E-value=66 Score=23.35 Aligned_cols=21 Identities=10% Similarity=0.185 Sum_probs=15.4
Q ss_pred eecCCCCCEEEEEEEEEEeCC
Q 031399 107 LSAAPHNAELIMEASVVRSGR 127 (160)
Q Consensus 107 l~p~~~g~~v~~~a~v~~~gr 127 (160)
-+-+..|++++|+++++|.|+
T Consensus 41 pk~I~~GeTvEIR~~l~reG~ 61 (137)
T PF12988_consen 41 PKKIKKGETVEIRCELKREGN 61 (137)
T ss_dssp -SS--TTEEEEEEEEEEESS-
T ss_pred ccccCCCCEEEEEEEEecCce
Confidence 355667999999999999984
No 103
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=26.34 E-value=1.3e+02 Score=22.12 Aligned_cols=30 Identities=10% Similarity=0.206 Sum_probs=22.9
Q ss_pred EEEEEEeCCcEEEEEEEEEE--CCCCCEEEEE
Q 031399 119 EASVVRSGRNVTVVAVEFKF--NDTGKLVCAS 148 (160)
Q Consensus 119 ~a~v~~~gr~~~~~~~~i~~--~~~g~lva~a 148 (160)
--+|.+.||+...=++.+|+ |++|..+..|
T Consensus 108 GiRiss~Grrf~ie~a~vW~l~D~~g~~~GqA 139 (148)
T PF08670_consen 108 GIRISSTGRRFRIERATVWNLIDEDGNYCGQA 139 (148)
T ss_pred eEEEcCCCCeEEEeceEEEEEEcCCCCEEEEE
Confidence 35677889999998999986 4677776555
No 104
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=25.48 E-value=55 Score=24.17 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=14.8
Q ss_pred CCeEEEEEeCCCCcccH
Q 031399 56 RGRLICHLSNFFGGIHG 72 (160)
Q Consensus 56 ~g~~~~~~~n~~g~vHG 72 (160)
++.+.++++.|+|.+||
T Consensus 131 ~DeV~~rLES~GG~Vh~ 147 (155)
T PF08496_consen 131 EDEVLVRLESPGGMVHG 147 (155)
T ss_pred CCeEEEEEecCCceeec
Confidence 46788889999999998
No 105
>PF11355 DUF3157: Protein of unknown function (DUF3157); InterPro: IPR021501 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=24.33 E-value=3.4e+02 Score=21.00 Aligned_cols=51 Identities=14% Similarity=0.266 Sum_probs=37.8
Q ss_pred EEEEEeecCCCCCEEEEEEEEEEeCCcE-EE--EEEEEEECCCCCEEEEEEEEEE
Q 031399 102 LGISYLSAAPHNAELIMEASVVRSGRNV-TV--VAVEFKFNDTGKLVCASHATFY 153 (160)
Q Consensus 102 l~i~fl~p~~~g~~v~~~a~v~~~gr~~-~~--~~~~i~~~~~g~lva~a~~~~~ 153 (160)
.++.|.++---|+.+.+...+...+... +. ++++++ +++|+++.+-+..++
T Consensus 100 VdV~l~~~~y~~~~L~l~~~ltnqSsqsVv~Vel~v~l~-d~~G~~L~~e~v~vW 153 (199)
T PF11355_consen 100 VDVSLGASQYEDGQLGLPFSLTNQSSQSVVLVELEVTLF-DDSGQLLKTETVKVW 153 (199)
T ss_pred eeEEEeccceeCCeEEEEEEEecCCCceEEEEEEEEEEE-cCCCCEeeEeeeehh
Confidence 4566777766688999999998886544 33 456666 899999998877664
No 106
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=23.95 E-value=1.8e+02 Score=18.79 Aligned_cols=24 Identities=0% Similarity=0.077 Sum_probs=19.3
Q ss_pred eEEEEEEEEEeecCCCCCEEEEEE
Q 031399 97 IFLGELGISYLSAAPHNAELIMEA 120 (160)
Q Consensus 97 ~vT~~l~i~fl~p~~~g~~v~~~a 120 (160)
-++.+.++.++.++++|+.|.+.+
T Consensus 23 G~~~~v~l~lv~~~~vGD~VLVH~ 46 (76)
T TIGR00074 23 GIKRDVSLDLVGEVKVGDYVLVHV 46 (76)
T ss_pred CeEEEEEEEeeCCCCCCCEEEEec
Confidence 356788999998899999887654
No 107
>KOG1206 consensus Peroxisomal multifunctional beta-oxidation protein and related enzymes [Lipid transport and metabolism]
Probab=22.65 E-value=2.1e+02 Score=22.99 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=29.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHhcccCCceeEEEEEEEEEeecCCCCCEEEE
Q 031399 68 GGIHGGAIAAFSERMAIACARTVVAEDKEIFLGELGISYLSAAPHNAELIM 118 (160)
Q Consensus 68 g~vHGG~~~~l~D~~~~~~~~~~~~~~~~~vT~~l~i~fl~p~~~g~~v~~ 118 (160)
.++||=+..++.--+.+. ..+ +.+-.+.++.|.+|+-+|++|..
T Consensus 192 pilHGlc~lg~~~riv~a----~~~---~a~y~~~kvrF~spV~pGdtll~ 235 (272)
T KOG1206|consen 192 PILHGLCTLGFSARIVGA----QFP---PAVYKAQKVRFSSPVGPGDTLLV 235 (272)
T ss_pred chhhhHHHhhhhHHHHHH----hcC---chhhheeeeeecCCCCCchhHHH
Confidence 569998777765543332 222 22345789999999999987753
No 108
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=21.87 E-value=2.3e+02 Score=18.26 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=26.8
Q ss_pred ecC-CCCCEEEEEEEEEEeCCc-----EEEEEEEEEECCCCCEEEEEEE
Q 031399 108 SAA-PHNAELIMEASVVRSGRN-----VTVVAVEFKFNDTGKLVCASHA 150 (160)
Q Consensus 108 ~p~-~~g~~v~~~a~v~~~gr~-----~~~~~~~i~~~~~g~lva~a~~ 150 (160)
||+ ++|++|.+.+-+.....+ -.-+.++|. +.+|+.+.+-..
T Consensus 8 r~iYrPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~-dp~g~~v~~~~~ 55 (99)
T PF01835_consen 8 RPIYRPGETVHFRAIVRDLDNDFKPPANSPVTVTIK-DPSGNEVFRWSV 55 (99)
T ss_dssp SSEE-TTSEEEEEEEEEEECTTCSCESSEEEEEEEE-ETTSEEEEEEEE
T ss_pred ccCcCCCCEEEEEEEEeccccccccccCCceEEEEE-CCCCCEEEEEEe
Confidence 444 468888888887766521 134667777 778887765544
No 109
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=20.21 E-value=4.2e+02 Score=20.50 Aligned_cols=55 Identities=4% Similarity=-0.010 Sum_probs=33.0
Q ss_pred eEEEEEEEEEeecCCC--CCEEEEEEEEEEe-CCc-EEEEEEEEEECC--CC--CEEEEEEEEE
Q 031399 97 IFLGELGISYLSAAPH--NAELIMEASVVRS-GRN-VTVVAVEFKFND--TG--KLVCASHATF 152 (160)
Q Consensus 97 ~vT~~l~i~fl~p~~~--g~~v~~~a~v~~~-gr~-~~~~~~~i~~~~--~g--~lva~a~~~~ 152 (160)
.+.++ ++.|.+|+.+ ++..++..++... ++. ...+++++++.. ++ .+.++|+..+
T Consensus 62 ~~~l~-~~~~~~pl~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~s~~~~~~~~~~h~~g~v~~ 124 (295)
T PF14765_consen 62 VVELR-DLRFHRPLVLDEGEPRELRVELDPEEDGSGSMEWRFEIFSRNKDDSGWTLHASGQVSL 124 (295)
T ss_dssp EEEEE-EEEE-S-EEE-TTTEEEEEEEEEEETTTTEEEEEEEEEEEEESTCCGEEEEEEEEEEE
T ss_pred cceEE-EeEecccEEecCCCcEEEEEEEEEccCCCCccceEEEEEEecCCCcceEEeeeeEEEe
Confidence 55555 8999999953 5688888888777 443 355667776532 22 3445555543
Done!