BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031401
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 91/143 (63%), Gaps = 3/143 (2%)
Query: 13 EYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISI 72
+YD FLSFRG DTR FI LY L + I F+DDK+LE G SP L IE SR ++
Sbjct: 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 73 IVLSKNYASSTWCLDELLKIVECKNRED-QIFPIFYEVEPTVVRKQTASFGEAFAKYEEF 131
+V+S+NYA+S+WCLDEL+ I++ + + + PIFY VEP VR QT E F K+
Sbjct: 68 VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS- 126
Query: 132 FRDNIEKVQKWRYALKVVANISG 154
R++ EKV KWR AL A +SG
Sbjct: 127 -REDPEKVLKWRQALTNFAQLSG 148
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 132 bits (333), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 99/159 (62%), Gaps = 9/159 (5%)
Query: 2 ASTSFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNL 61
S SF +V EY+ FLSFRG DTR++F LY +L I+ FRDD +L KG I PNL
Sbjct: 27 PSGSFPSV---EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNL 83
Query: 62 LKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQ---IFPIFYEVEPTVVRKQT 118
L+ I++S+I + ++S YA S WCL EL +IV + ED I PIFY V+P+ VR QT
Sbjct: 84 LRAIDQSKIYVPIISSGYADSKWCLMELAEIVR-RQEEDPRRIILPIFYMVDPSDVRHQT 142
Query: 119 ASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWEL 157
+ +AF K+ F + + +Q W+ ALK V ++ GW +
Sbjct: 143 GCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHI 179
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 13 EYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISI 72
++ AF+S+ G D+ L L +G + ++ G SI N++ IE+S SI
Sbjct: 12 QFHAFISYSGHDSF-WVKNELLPNLEKEGXQICLHERNFVPGKSIVENIITCIEKSYKSI 70
Query: 73 IVLSKNYASSTWCLDEL 89
VLS N+ S WC EL
Sbjct: 71 FVLSPNFVQSEWCHYEL 87
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 1 MASTSFQNVSHGEYDAFLSFRGEDT---RKRFIGHLYTALNNKGIYVFRDDKQLEKGGSI 57
M +T Q + + AF+S+ D+ + I +L + I + + + G SI
Sbjct: 23 MKTTQEQLKRNVRFHAFISYSEHDSLWVKNELIPNLEK--EDGSILICLYESYFDPGKSI 80
Query: 58 SPNLLKTIEESRISIIVLSKNYASSTWC 85
S N++ IE+S SI VLS N+ + WC
Sbjct: 81 SENIVSFIEKSYKSIFVLSPNFVQNEWC 108
>pdb|1FYX|A Chain A, Crystal Structure Of P681h Mutant Of Tir Domain Of Human
Tlr2
Length = 149
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 54 GGSISPNLLKTIEESRISIIVLSKNYASSTWCLDEL 89
G I N++ +IE+S ++ VLS+N+ S W EL
Sbjct: 47 GKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYEL 82
>pdb|1O77|A Chain A, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|B Chain B, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|C Chain C, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|D Chain D, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|E Chain E, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
Length = 146
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 14 YDAFLSFRGED---TRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRI 70
YDAF+S+ D + L N + + G I N++ +IE+S
Sbjct: 3 YDAFVSYSERDAYWVENLMVQELENF--NPPFKLCLHKRDFIPGKWIIDNIIDSIEKSHK 60
Query: 71 SIIVLSKNYASSTWCLDEL 89
++ VLS+N+ S W EL
Sbjct: 61 TVFVLSENFVKSEWSKYEL 79
>pdb|1FYW|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr2
Length = 149
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 54 GGSISPNLLKTIEESRISIIVLSKNYASSTWCLDEL 89
G I N++ +IE+S ++ VLS+N+ S W EL
Sbjct: 47 GKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYEL 82
>pdb|2Y92|A Chain A, Crystal Structure Of Mal Adaptor Protein
Length = 145
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 38 NNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDELLK-IVECK 96
+ + F + GG+I L + + S +++++ + WC ++L+ + E
Sbjct: 34 STASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAP 93
Query: 97 NREDQIFPIF 106
E P+
Sbjct: 94 GAEGCTIPLL 103
>pdb|1WRU|A Chain A, Structure Of Central Hub Elucidated By X-Ray Analysis Of
Gene Product 44; Baseplate Component Of Bacteriophage Mu
Length = 379
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 59 PNLLKTIEESRISIIVLSKNYASSTWCL---DELLKIVECKNREDQIFPIFYEVEPTVVR 115
PNLL TI+ S+ +I + T L D L V RE + P+ + + R
Sbjct: 294 PNLLVTIDASKYAIKTTELLVSKVTLILNDQDGLKTRVSLAPREGFLVPVESDRKN---R 350
Query: 116 KQTASFGEAFAKYEEFFRDNIEKVQKWR 143
K S G A E+++R + EK W+
Sbjct: 351 KGGDSNGGIDALVEDYYRRHPEKTPPWK 378
>pdb|3UB3|A Chain A, D96n Variant Of Tir Domain Of MalTIRAP
Length = 146
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 34 YTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDELLK-I 92
Y + + F + GG+I L + + S +++++ + WC ++L+ +
Sbjct: 31 YLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQAL 90
Query: 93 VECKNREDQIFPIF 106
E E P+
Sbjct: 91 TEAPGAEGCTIPLL 104
>pdb|3UB2|A Chain A, Tir Domain Of MalTIRAP
Length = 146
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 34 YTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDELLK-I 92
Y + + F + GG+I L + + S +++++ + WC ++L+ +
Sbjct: 31 YLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQAL 90
Query: 93 VECKNREDQIFPIF 106
E E P+
Sbjct: 91 TEAPGAEGCTIPLL 104
>pdb|3UB4|A Chain A, S180l Variant Of Tir Domain Of MalTIRAP
Length = 146
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 38 NNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDELLK-IVECK 96
+ + F + GG+I L + + S +++++ + WC ++L+ + E
Sbjct: 35 STASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAP 94
Query: 97 NREDQIFPIF 106
E P+
Sbjct: 95 GAEGCTIPLL 104
>pdb|2DIE|A Chain A, Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1378
Length = 485
Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 4 TSFQNVSHGEYDAF----LSFRGE-----DTRKRFIGHLYTALNNKGIYVFRDDKQLEKG 54
TS +V +G YD + + +G TR + G + T+L N GI V+ D KG
Sbjct: 51 TSQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQGAV-TSLKNNGIQVYGDVVMNHKG 109
Query: 55 GSISPNLLKTIEESR 69
G+ ++ +E +R
Sbjct: 110 GADGTEMVNAVEVNR 124
>pdb|3GUE|A Chain A, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
pdb|3GUE|B Chain B, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
Length = 484
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 88 ELLKIVECKNREDQIFPIFYEVEPT 112
EL++ K R+D FP+ YE +PT
Sbjct: 159 ELMQNRVPKIRQDNFFPVTYEADPT 183
>pdb|1T3G|A Chain A, Crystal Structure Of The TollINTERLEUKIN-1 Receptor
(Tir) Domain Of Human Il-1rapl
pdb|1T3G|B Chain B, Crystal Structure Of The TollINTERLEUKIN-1 Receptor
(Tir) Domain Of Human Il-1rapl
Length = 159
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 13 EYDAFLSFRGEDT---------RKRFIGHLYTALNNK--GIYVFRDDKQLEKGGSISPNL 61
+YDA+LS+ D +RF + K G +F D+ L G+ ++
Sbjct: 2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDXLEKHYGYKLFIPDRDLIPTGTYIEDV 61
Query: 62 LKTIEESRISIIVLSKNY-ASSTWCLDEL 89
+ +++S+ IIV + NY W + EL
Sbjct: 62 ARCVDQSKRLIIVXTPNYVVRRGWSIFEL 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,611,218
Number of Sequences: 62578
Number of extensions: 174657
Number of successful extensions: 544
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 25
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)