Query 031401
Match_columns 160
No_of_seqs 130 out of 1393
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 21:52:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 5.3E-50 1.8E-54 303.2 12.7 154 5-160 27-182 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 5.3E-49 1.8E-53 292.8 11.3 148 10-159 5-153 (176)
3 3h16_A TIR protein; bacteria T 100.0 1.7E-35 5.9E-40 216.2 0.8 135 9-149 16-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 2E-31 6.7E-36 193.3 2.3 133 5-146 2-145 (146)
5 1t3g_A X-linked interleukin-1 99.9 6.1E-27 2.1E-31 171.8 6.7 102 12-113 1-116 (159)
6 2js7_A Myeloid differentiation 99.9 2.4E-27 8.1E-32 174.2 3.7 101 9-111 12-117 (160)
7 1fyx_A TOLL-like receptor 2; b 99.9 8.8E-28 3E-32 174.5 1.0 100 10-111 2-106 (149)
8 2j67_A TOLL like receptor 10; 99.9 1.8E-27 6E-32 177.6 2.6 103 8-112 30-137 (178)
9 3j0a_A TOLL-like receptor 5; m 99.8 1.4E-21 4.9E-26 173.7 6.9 103 9-113 666-776 (844)
10 1eiw_A Hypothetical protein MT 98.4 1.7E-07 5.7E-12 64.3 3.9 73 12-107 3-75 (111)
11 3hyn_A Putative signal transdu 97.8 6.2E-05 2.1E-09 55.5 7.6 92 13-108 5-118 (189)
12 2f62_A Nucleoside 2-deoxyribos 94.2 0.49 1.7E-05 33.8 9.5 73 28-106 27-105 (161)
13 2khz_A C-MYC-responsive protei 92.7 1.9 6.4E-05 30.7 10.7 88 11-105 9-109 (165)
14 4fyk_A Deoxyribonucleoside 5'- 88.7 3.9 0.00013 28.9 8.8 72 28-106 19-101 (152)
15 3ehd_A Uncharacterized conserv 84.4 9 0.00031 27.2 9.2 77 28-108 20-106 (162)
16 1s2d_A Purine trans deoxyribos 70.4 26 0.00088 24.8 8.0 87 15-105 9-115 (167)
17 2yvq_A Carbamoyl-phosphate syn 67.0 14 0.00048 25.3 5.7 62 16-79 27-106 (143)
18 2jug_A TUBC protein; docking d 60.7 7.4 0.00025 23.9 3.0 38 30-67 7-47 (78)
19 1byr_A Protein (endonuclease); 55.2 17 0.00058 24.4 4.4 16 30-45 16-31 (155)
20 4a6h_A Phosphatidylinositol 4, 42.5 16 0.00056 24.2 2.5 20 134-153 101-120 (120)
21 1f8y_A Nucleoside 2-deoxyribos 41.0 42 0.0014 23.4 4.6 75 28-106 19-113 (157)
22 1sc3_B Interleukin-1 beta conv 40.8 8.6 0.0003 24.3 0.8 25 17-41 21-45 (88)
23 3net_A Histidyl-tRNA synthetas 40.2 60 0.0021 26.6 6.1 63 11-78 369-431 (465)
24 1wu7_A Histidyl-tRNA synthetas 39.8 91 0.0031 25.0 7.1 58 13-76 332-390 (434)
25 2ql9_B Caspase-7; cysteine pro 38.4 7.7 0.00026 24.9 0.3 30 12-41 9-47 (97)
26 2fzv_A Putative arsenical resi 38.1 1.1E+02 0.0038 23.4 7.0 65 28-95 76-148 (279)
27 3lc0_A Histidyl-tRNA synthetas 36.8 1.1E+02 0.0036 25.1 7.1 60 12-76 360-419 (456)
28 1qtn_B Caspase-8; apoptosis, d 36.5 7.4 0.00025 25.0 -0.0 31 11-41 10-49 (95)
29 1evl_A Threonyl-tRNA synthetas 36.3 96 0.0033 24.6 6.6 60 12-76 297-356 (401)
30 1v95_A Nuclear receptor coacti 36.1 1E+02 0.0034 20.9 5.8 45 27-73 21-66 (130)
31 2i4l_A Proline-tRNA ligase; al 35.0 42 0.0014 27.4 4.4 61 12-77 364-427 (458)
32 2q62_A ARSH; alpha/beta, flavo 34.7 1.4E+02 0.0048 22.1 8.8 65 28-95 52-123 (247)
33 2dko_B Caspase-3; low barrier 34.5 9.6 0.00033 24.8 0.3 31 11-41 14-53 (103)
34 4g84_A Histidine--tRNA ligase, 34.2 1E+02 0.0035 24.8 6.6 60 11-75 364-424 (464)
35 1pyo_B Caspase-2; apoptosis, c 33.9 9.9 0.00034 24.8 0.3 24 18-41 28-51 (105)
36 2coc_A FYVE, rhogef and PH dom 32.3 31 0.0011 22.5 2.6 18 134-151 89-106 (112)
37 4g85_A Histidine-tRNA ligase, 32.1 1.8E+02 0.0062 23.9 7.9 62 11-76 417-478 (517)
38 1nj1_A PROR, proline-tRNA synt 31.9 52 0.0018 27.4 4.5 61 12-77 313-378 (501)
39 1htt_A Histidyl-tRNA synthetas 31.3 96 0.0033 24.7 5.9 59 12-76 326-387 (423)
40 2yry_A Pleckstrin homology dom 30.9 35 0.0012 21.7 2.7 18 135-152 104-121 (122)
41 1v5p_A Pleckstrin homology dom 30.3 35 0.0012 22.6 2.6 20 134-153 103-122 (126)
42 3pid_A UDP-glucose 6-dehydroge 29.5 45 0.0015 27.3 3.6 50 23-72 347-400 (432)
43 3ro3_B Minsc, peptide of prote 29.0 43 0.0015 15.4 1.9 13 137-149 8-20 (22)
44 2xzd_B Caspase-3; hydrolase-pr 28.2 15 0.00053 24.5 0.5 25 17-41 28-52 (118)
45 2cof_A Protein KIAA1914; PH do 27.4 44 0.0015 20.9 2.6 19 134-152 84-102 (107)
46 3rjm_B Caspase-2; caspase-2, c 26.6 15 0.00052 24.5 0.2 31 11-41 13-52 (117)
47 4e51_A Histidine--tRNA ligase; 26.5 1E+02 0.0035 25.3 5.3 64 12-76 353-416 (467)
48 1hc7_A Prolyl-tRNA synthetase; 26.5 81 0.0028 26.0 4.7 43 12-54 286-333 (477)
49 1qe0_A Histidyl-tRNA synthetas 26.2 80 0.0027 25.1 4.5 60 12-76 328-387 (420)
50 3hjn_A DTMP kinase, thymidylat 25.1 1.2E+02 0.0042 21.3 5.0 31 17-47 2-34 (197)
51 1bax_A M-PMV MA, M-PMV matrix 25.1 41 0.0014 21.7 2.1 17 28-44 10-26 (94)
52 1tu9_A Hypothetical protein PA 24.9 45 0.0015 22.0 2.4 44 108-153 85-128 (134)
53 2d9v_A Pleckstrin homology dom 24.3 56 0.0019 21.3 2.8 21 134-154 97-117 (130)
54 4a7p_A UDP-glucose dehydrogena 23.7 80 0.0028 25.8 4.1 60 22-81 336-403 (446)
55 3ozi_A L6TR; plant TIR domain, 23.7 55 0.0019 24.1 2.8 66 40-108 34-99 (204)
56 2i5f_A Pleckstrin; PH domain, 23.5 56 0.0019 20.1 2.6 17 134-150 92-108 (109)
57 3aj4_A Pleckstrin homology dom 23.3 56 0.0019 20.3 2.6 17 134-150 94-110 (112)
58 3zyz_A Beta-D-glucoside glucoh 23.1 3.7E+02 0.013 23.3 8.8 77 30-114 396-488 (713)
59 3ikl_A DNA polymerase subunit 23.1 2.7E+02 0.0092 22.9 7.2 54 24-81 361-417 (459)
60 1jdp_A NPR-C, atrial natriuret 22.6 1.6E+02 0.0056 22.9 5.8 57 16-73 157-217 (441)
61 1wgq_A FYVE, rhogef and PH dom 22.3 59 0.002 20.2 2.5 18 134-151 86-103 (109)
62 1upq_A PEPP1; PH domain, phosp 22.3 60 0.002 20.5 2.6 22 134-155 92-113 (123)
63 2dkp_A Pleckstrin homology dom 21.7 83 0.0028 20.0 3.2 19 134-152 102-120 (128)
64 2pw6_A Uncharacterized protein 21.2 1.6E+02 0.0053 22.3 5.1 76 27-106 95-171 (271)
65 1nyr_A Threonyl-tRNA synthetas 21.1 84 0.0029 26.9 3.9 60 12-76 544-604 (645)
66 2zt5_A Glycyl-tRNA synthetase; 21.0 1.5E+02 0.0051 25.8 5.4 62 13-78 559-621 (693)
67 3kkq_A RAS-related protein M-R 20.9 1.9E+02 0.0065 19.1 9.0 28 53-80 74-102 (183)
68 1qf6_A THRRS, threonyl-tRNA sy 20.7 1E+02 0.0034 26.5 4.3 63 12-79 538-600 (642)
69 3ojo_A CAP5O; rossmann fold, c 20.7 1.3E+02 0.0045 24.5 4.8 53 22-75 329-382 (431)
70 2d9y_A Pleckstrin homology dom 20.3 71 0.0024 19.9 2.6 18 135-152 93-110 (117)
71 4hde_A SCO1/SENC family lipopr 20.0 1.7E+02 0.0059 19.7 4.8 43 69-112 33-79 (170)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=5.3e-50 Score=303.21 Aligned_cols=154 Identities=42% Similarity=0.756 Sum_probs=141.0
Q ss_pred CCCCCCCCcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChh
Q 031401 5 SFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTW 84 (160)
Q Consensus 5 sss~~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~w 84 (160)
|+++.+.++|||||||+++|+++.|+.+|+++|+++||++|+|++++.+|+.+.++|.++|++|+++|+|+|++|+.|.|
T Consensus 27 ~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~W 106 (204)
T 3ozi_A 27 PSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKW 106 (204)
T ss_dssp -------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHH
T ss_pred CcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcH
Confidence 44555789999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-hh-cCCcceeEEeecCchhhhcccchHHHHHHHHHHhhccCHHHHHHHHHHHHHhhcccceeecCC
Q 031401 85 CLDELLKIVEC-KN-REDQIFPIFYEVEPTVVRKQTASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWELKDR 160 (160)
Q Consensus 85 c~~El~~~~~~-~~-~~~~IiPI~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~G~~~~~~ 160 (160)
|+.||..+++| +. .+++||||||+|+|++||.|+|.||++|.++.+.+. ++++++||.||+++++++||++.++
T Consensus 107 Cl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~ 182 (204)
T 3ozi_A 107 CLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKN 182 (204)
T ss_dssp HHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTT
T ss_pred HHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCC
Confidence 99999999999 54 678999999999999999999999999999998875 5899999999999999999999764
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=5.3e-49 Score=292.77 Aligned_cols=148 Identities=48% Similarity=0.780 Sum_probs=126.9
Q ss_pred CCCcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChhHHHHH
Q 031401 10 SHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDEL 89 (160)
Q Consensus 10 ~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~wc~~El 89 (160)
..++|||||||+++|++..|+.+|+++|+++|+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|++|.||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 46899999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-hhcCCcceeEEeecCchhhhcccchHHHHHHHHHHhhccCHHHHHHHHHHHHHhhcccceeecC
Q 031401 90 LKIVEC-KNREDQIFPIFYEVEPTVVRKQTASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANISGWELKD 159 (160)
Q Consensus 90 ~~~~~~-~~~~~~IiPI~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~G~~~~~ 159 (160)
..+++| +..+++||||||+++|++|+.|+|.||++|.++++. .+++++++||+||+++++++|+++.+
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~~ 153 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSGD 153 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECCS
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecCC
Confidence 999999 888999999999999999999999999999999987 45799999999999999999999853
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=1.7e-35 Score=216.18 Aligned_cols=135 Identities=25% Similarity=0.362 Sum_probs=118.0
Q ss_pred CCCCcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChhHHHH
Q 031401 9 VSHGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDE 88 (160)
Q Consensus 9 ~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~wc~~E 88 (160)
++.++|||||||+++| +..|+.+|..+|+++|+++|+|.+++.+|+.|.++|.++|++|+++|+|+|++|+.|.||+.|
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 4679999999999999 457999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-hhcCCcceeEEeecCchhhhcccchHHHHHHHHHHhhccCHHHHHHHHHHHHHh
Q 031401 89 LLKIVEC-KNREDQIFPIFYEVEPTVVRKQTASFGEAFAKYEEFFRDNIEKVQKWRYALKVV 149 (160)
Q Consensus 89 l~~~~~~-~~~~~~IiPI~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~ 149 (160)
+..++++ ...+.+||||||+++|++|+.+.|.||+.|...... +.+.++.+.|.++
T Consensus 95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~-----~~~~~ia~~l~~l 151 (154)
T 3h16_A 95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTST-----KSVDEIVADLMAI 151 (154)
T ss_dssp HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTT-----SCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCc-----ccHHHHHHHHHHH
Confidence 9999998 777889999999999999999999999877665443 2244454455443
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.96 E-value=2e-31 Score=193.27 Aligned_cols=133 Identities=16% Similarity=0.282 Sum_probs=93.1
Q ss_pred CCCCCCCCcccEEEecccCCCchhHHHHHHHHHHc--CCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCC
Q 031401 5 SFQNVSHGEYDAFLSFRGEDTRKRFIGHLYTALNN--KGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASS 82 (160)
Q Consensus 5 sss~~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~--~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S 82 (160)
|.|+..++.|||||||+++|. .||.+|.++|++ .|+++|++++|+.||..+.++|.++|++|+++|+|+|++|++|
T Consensus 2 ~~~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S 79 (146)
T 3ub2_A 2 PGSSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQD 79 (146)
T ss_dssp --CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHC
T ss_pred CCCCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccC
Confidence 445677899999999999996 568999999998 5999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH-hhcCCcceeEEeecCchhhhcccch--------HHHHHHHHHHhhccCHHHHHHHHHHH
Q 031401 83 TWCLDELLKIVEC-KNREDQIFPIFYEVEPTVVRKQTAS--------FGEAFAKYEEFFRDNIEKVQKWRYAL 146 (160)
Q Consensus 83 ~wc~~El~~~~~~-~~~~~~IiPI~~~~~p~~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~~w~~al 146 (160)
.||+.|+..|+++ .....+||||++++.++++....+. ....|..+ .+.+.+|++||
T Consensus 80 ~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~ 145 (146)
T 3ub2_A 80 PWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence 9999999999998 3344478899998876665432221 12233333 36788888875
No 5
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.93 E-value=6.1e-27 Score=171.81 Aligned_cols=102 Identities=25% Similarity=0.399 Sum_probs=90.7
Q ss_pred CcccEEEecccCCCc---------hhHHHHHHH-HHH-cCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCc
Q 031401 12 GEYDAFLSFRGEDTR---------KRFIGHLYT-ALN-NKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYA 80 (160)
Q Consensus 12 ~~yDVFISy~~~D~~---------~~fv~~L~~-~L~-~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~ 80 (160)
+.|||||||+++|.+ ..||.+|.+ .|+ +.||++|+|++|+.||..+.++|.++|++|+++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 579999999999963 568888555 699 689999999999999999999999999999999999999997
Q ss_pred -CChhHHHHHHHHHHH--hhcCCcceeEEeecCchh
Q 031401 81 -SSTWCLDELLKIVEC--KNREDQIFPIFYEVEPTV 113 (160)
Q Consensus 81 -~S~wc~~El~~~~~~--~~~~~~IiPI~~~~~p~~ 113 (160)
.|.||..|++.|+++ ...+.+||||++...+..
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~~ 116 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRGI 116 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCSH
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccccc
Confidence 999999999999998 666789999999866643
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.93 E-value=2.4e-27 Score=174.16 Aligned_cols=101 Identities=19% Similarity=0.318 Sum_probs=92.3
Q ss_pred CCCCcccEEEecccCCCchhHHHHHHHHHHcC--CceEEeeCCCCCCCCCchHHHHHHHH-hcceEEEEeecCCcCChhH
Q 031401 9 VSHGEYDAFLSFRGEDTRKRFIGHLYTALNNK--GIYVFRDDKQLEKGGSISPNLLKTIE-ESRISIIVLSKNYASSTWC 85 (160)
Q Consensus 9 ~~~~~yDVFISy~~~D~~~~fv~~L~~~L~~~--g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~I~vlS~~~~~S~wc 85 (160)
..++.|||||||+++|. .||.+|.++|++. |+++|++++|+.||..+.++|.++|+ +|+++|+|+|++|++|.||
T Consensus 12 ~~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 12 HMPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CCTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 34789999999999994 7999999999985 79999999999999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHH--hhcCCcceeEEeecCc
Q 031401 86 LDELLKIVEC--KNREDQIFPIFYEVEP 111 (160)
Q Consensus 86 ~~El~~~~~~--~~~~~~IiPI~~~~~p 111 (160)
+.|+..|+++ ...+.+||||+|+..+
T Consensus 90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 90 DFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 9999999998 4556799999998654
No 7
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.93 E-value=8.8e-28 Score=174.51 Aligned_cols=100 Identities=25% Similarity=0.361 Sum_probs=91.7
Q ss_pred CCCcccEEEecccCCCchhHHHH-HHHHHHcC--CceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChhHH
Q 031401 10 SHGEYDAFLSFRGEDTRKRFIGH-LYTALNNK--GIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCL 86 (160)
Q Consensus 10 ~~~~yDVFISy~~~D~~~~fv~~-L~~~L~~~--g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~wc~ 86 (160)
.++.|||||||+++|. .||.+ |.++|++. |+++|+|++|+.||..+.++|.++|++|+++|+|+|++|+.|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4688999999999996 78986 99999986 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--hhcCCcceeEEeecCc
Q 031401 87 DELLKIVEC--KNREDQIFPIFYEVEP 111 (160)
Q Consensus 87 ~El~~~~~~--~~~~~~IiPI~~~~~p 111 (160)
.|+..|+++ ...+.+||||+++..+
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~ 106 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIE 106 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence 999999865 5677899999996443
No 8
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.93 E-value=1.8e-27 Score=177.62 Aligned_cols=103 Identities=28% Similarity=0.442 Sum_probs=89.8
Q ss_pred CCCCCcccEEEecccCCCchhHHHH-HHHHHHc--CCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChh
Q 031401 8 NVSHGEYDAFLSFRGEDTRKRFIGH-LYTALNN--KGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTW 84 (160)
Q Consensus 8 ~~~~~~yDVFISy~~~D~~~~fv~~-L~~~L~~--~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~w 84 (160)
...++.|||||||+++|. .||.+ |.++|++ .|+++|+|++|+.||..+.++|.++|++|+++|+|+|++|+.|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 456889999999999995 78975 9999998 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hhcCCcceeEEeecCch
Q 031401 85 CLDELLKIVEC--KNREDQIFPIFYEVEPT 112 (160)
Q Consensus 85 c~~El~~~~~~--~~~~~~IiPI~~~~~p~ 112 (160)
|+.|+..|+++ ...+.+||||+++..|.
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~ 137 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIPF 137 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCCG
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCCh
Confidence 99999999976 55677999999975444
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=1.4e-21 Score=173.72 Aligned_cols=103 Identities=17% Similarity=0.335 Sum_probs=93.8
Q ss_pred CCCCcccEEEecccCCCchhHH-HHHHHHHHc-----CCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCC
Q 031401 9 VSHGEYDAFLSFRGEDTRKRFI-GHLYTALNN-----KGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASS 82 (160)
Q Consensus 9 ~~~~~yDVFISy~~~D~~~~fv-~~L~~~L~~-----~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S 82 (160)
..++.|||||||+++|. .|| .+|.+.||+ .|+++|+++||+.||..+.++|.++|++||++|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 35789999999999996 567 669999996 4899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH--hhcCCcceeEEeecCchh
Q 031401 83 TWCLDELLKIVEC--KNREDQIFPIFYEVEPTV 113 (160)
Q Consensus 83 ~wc~~El~~~~~~--~~~~~~IiPI~~~~~p~~ 113 (160)
.||..|++.|+++ ++.+++|||||++..|..
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~~ 776 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQY 776 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCCSS
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCChH
Confidence 9999999999988 677889999999876643
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.42 E-value=1.7e-07 Score=64.27 Aligned_cols=73 Identities=11% Similarity=0.038 Sum_probs=56.9
Q ss_pred CcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHH
Q 031401 12 GEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDELLK 91 (160)
Q Consensus 12 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~wc~~El~~ 91 (160)
++|.+||||+.+| . .+.|...|.+.|+...- ..|+.|.++|++.++....|+||.+|+..
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~~----------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWRP----------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEEE----------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCeeec----------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 5799999999998 2 45666666533554331 67899999999999999999999999987
Q ss_pred HHHHhhcCCcceeEEe
Q 031401 92 IVECKNREDQIFPIFY 107 (160)
Q Consensus 92 ~~~~~~~~~~IiPI~~ 107 (160)
|.+ .+++||-|.-
T Consensus 63 A~~---~gkpIigV~~ 75 (111)
T 1eiw_A 63 ARK---SSKPIITVRP 75 (111)
T ss_dssp HTT---TTCCEEEECC
T ss_pred HHH---cCCCEEEEEc
Confidence 765 5677777764
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.83 E-value=6.2e-05 Score=55.47 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=69.1
Q ss_pred cccEEEec--------------ccCCCchhHHHHHHHHHHcCCceEEeeCCCCC-------C-CCCchHHHHHHHHhcce
Q 031401 13 EYDAFLSF--------------RGEDTRKRFIGHLYTALNNKGIYVFRDDKQLE-------K-GGSISPNLLKTIEESRI 70 (160)
Q Consensus 13 ~yDVFISy--------------~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~-------~-G~~~~~~i~~~i~~S~~ 70 (160)
+--+||+| +.+| ....+.|..--++...--|.|..++. . -..|.+.|.+.|.+|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 34578888 3444 34567777666666665577765552 2 23577899999999999
Q ss_pred EEEEeecCCcCChhHHHHHHHHHHHhhcCCcceeEEee
Q 031401 71 SIIVLSKNYASSTWCLDELLKIVECKNREDQIFPIFYE 108 (160)
Q Consensus 71 ~I~vlS~~~~~S~wc~~El~~~~~~~~~~~~IiPI~~~ 108 (160)
+|+++|++...+.|..+|++.|++ ..+.+||-|..+
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~--~~~~PII~Vy~~ 118 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG--TKGLPVIVIYPD 118 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT--TTCCCEEEEETT
T ss_pred EEEEEecCccccchhHHHHHHHHH--hcCCcEEEEECC
Confidence 999999999999999999998882 257788888765
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=94.23 E-value=0.49 Score=33.84 Aligned_cols=73 Identities=8% Similarity=0.085 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHH----HHHHHhcceEEEEeec--CCcCChhHHHHHHHHHHHhhcCCc
Q 031401 28 RFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNL----LKTIEESRISIIVLSK--NYASSTWCLDELLKIVECKNREDQ 101 (160)
Q Consensus 28 ~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i----~~~i~~S~~~I~vlS~--~~~~S~wc~~El~~~~~~~~~~~~ 101 (160)
.+...+...|++.|+.+++-..+ ...+...| .++|++|+++|.+++| .-..+.-...|+..|.. .++.
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~---~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~A---lgKP 100 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDN---EATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAA---LNKM 100 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTT---CCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHH---TTCE
T ss_pred HHHHHHHHHHHHCCCEEECCCcc---CcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHH---CCCE
Confidence 56888999999999998873211 11244444 6899999999999997 44456678999998887 4555
Q ss_pred ceeEE
Q 031401 102 IFPIF 106 (160)
Q Consensus 102 IiPI~ 106 (160)
|+-+.
T Consensus 101 Vi~l~ 105 (161)
T 2f62_A 101 VLTFT 105 (161)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 55543
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=92.75 E-value=1.9 Score=30.66 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=56.3
Q ss_pred CCcccEEEecccC-CCc-hhHHHHHHHHHHcCCceEEeeCCCC----CCCCC-------chHHHHHHHHhcceEEEEeec
Q 031401 11 HGEYDAFLSFRGE-DTR-KRFIGHLYTALNNKGIYVFRDDKQL----EKGGS-------ISPNLLKTIEESRISIIVLSK 77 (160)
Q Consensus 11 ~~~yDVFISy~~~-D~~-~~fv~~L~~~L~~~g~~v~~d~~dl----~~G~~-------~~~~i~~~i~~S~~~I~vlS~ 77 (160)
++...|||+=.-. +.. ......+...|++.| .|..+..-. ..|.. +...-.+.|++|+++|++++
T Consensus 9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~- 86 (165)
T 2khz_A 9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT- 86 (165)
T ss_dssp CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS-
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC-
Confidence 3346799985433 211 224578999999999 886543211 11211 11222478999999999997
Q ss_pred CCcCChhHHHHHHHHHHHhhcCCcceeE
Q 031401 78 NYASSTWCLDELLKIVECKNREDQIFPI 105 (160)
Q Consensus 78 ~~~~S~wc~~El~~~~~~~~~~~~IiPI 105 (160)
-.+.-+..|+..|.. .++.|+-+
T Consensus 87 --~~d~Gt~~EiGyA~a---lgKPVi~l 109 (165)
T 2khz_A 87 --QPSLGVGYELGRAVA---LGKPILCL 109 (165)
T ss_dssp --SCCHHHHHHHHHHHH---TCSSEEEE
T ss_pred --CCCCCHHHHHHHHHH---CCCEEEEE
Confidence 567889999998887 45566554
No 14
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=88.66 E-value=3.9 Score=28.86 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHcCCceEEeeCC---CC-CCCCC-------chHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHHh
Q 031401 28 RFIGHLYTALNNKGIYVFRDDK---QL-EKGGS-------ISPNLLKTIEESRISIIVLSKNYASSTWCLDELLKIVECK 96 (160)
Q Consensus 28 ~fv~~L~~~L~~~g~~v~~d~~---dl-~~G~~-------~~~~i~~~i~~S~~~I~vlS~~~~~S~wc~~El~~~~~~~ 96 (160)
.+...+...|++.| .|+...- ++ ..|.. +.+.-.+.|++|+++|.+++ ..|.-...|+..|..
T Consensus 19 ~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~d~Gt~~EiG~A~a-- 92 (152)
T 4fyk_A 19 ALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QPSLGVGYELGRAVA-- 92 (152)
T ss_dssp HHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SCCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CCCCCHHHHHHHHHH--
Confidence 45788999999999 6643211 11 01111 33444578999999999998 567788999998887
Q ss_pred hcCCcceeEE
Q 031401 97 NREDQIFPIF 106 (160)
Q Consensus 97 ~~~~~IiPI~ 106 (160)
.+++|+-++
T Consensus 93 -lgkPV~~l~ 101 (152)
T 4fyk_A 93 -LGKPILCLF 101 (152)
T ss_dssp -TTCCEEEEE
T ss_pred -cCCeEEEEE
Confidence 345555444
No 15
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=84.42 E-value=9 Score=27.22 Aligned_cols=77 Identities=9% Similarity=0.113 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHcC--CceEEeeCCCC----CCCCCchHHHH----HHHHhcceEEEEeecCCcCChhHHHHHHHHHHHhh
Q 031401 28 RFIGHLYTALNNK--GIYVFRDDKQL----EKGGSISPNLL----KTIEESRISIIVLSKNYASSTWCLDELLKIVECKN 97 (160)
Q Consensus 28 ~fv~~L~~~L~~~--g~~v~~d~~dl----~~G~~~~~~i~----~~i~~S~~~I~vlS~~~~~S~wc~~El~~~~~~~~ 97 (160)
.+...+..+|+.. |+.++.=.++- .++..+...|. ++|++|+++|.++. ....+..+..|+..|..
T Consensus 20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a--- 95 (162)
T 3ehd_A 20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYA--- 95 (162)
T ss_dssp HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHH---
Confidence 4577799999875 88887632221 12333444444 57999999999995 34467889999998887
Q ss_pred cCCcceeEEee
Q 031401 98 REDQIFPIFYE 108 (160)
Q Consensus 98 ~~~~IiPI~~~ 108 (160)
.+++|+.+.-+
T Consensus 96 ~gkPVi~~~~D 106 (162)
T 3ehd_A 96 KGIPVVALYTD 106 (162)
T ss_dssp TTCCEEEECCC
T ss_pred CCCEEEEEEcC
Confidence 45566665433
No 16
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=70.39 E-value=26 Score=24.81 Aligned_cols=87 Identities=10% Similarity=0.011 Sum_probs=55.1
Q ss_pred cEEEecccCCC-chhHHHHHHHHHHcC--CceEEeeCCC-C--------CCC----CCch----HHHHHHHHhcceEEEE
Q 031401 15 DAFLSFRGEDT-RKRFIGHLYTALNNK--GIYVFRDDKQ-L--------EKG----GSIS----PNLLKTIEESRISIIV 74 (160)
Q Consensus 15 DVFISy~~~D~-~~~fv~~L~~~L~~~--g~~v~~d~~d-l--------~~G----~~~~----~~i~~~i~~S~~~I~v 74 (160)
.||+.=.--.. .......+...|++. |+.++.=.++ . ..+ ..+. +.-.++|++|+++|.+
T Consensus 9 kIYLAGP~F~~~~~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vVA~ 88 (167)
T 1s2d_A 9 KIYLGSPFYSDAQRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVFL 88 (167)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEEEE
Confidence 47775332111 134678899999999 8888763321 1 111 1122 3334689999999999
Q ss_pred eecCCcCChhHHHHHHHHHHHhhcCCcceeE
Q 031401 75 LSKNYASSTWCLDELLKIVECKNREDQIFPI 105 (160)
Q Consensus 75 lS~~~~~S~wc~~El~~~~~~~~~~~~IiPI 105 (160)
+...- .+.-+..|+..|.. .++.|+-+
T Consensus 89 ldg~~-~D~GTa~EiGyA~a---lgKPVv~l 115 (167)
T 1s2d_A 89 YDMDQ-LDDGSAFXIGFMRA---MHKPVILV 115 (167)
T ss_dssp EESSS-CCHHHHHHHHHHHH---TTCCEEEE
T ss_pred CCCCC-CCCCceeehhhHhh---CCCeEEEE
Confidence 98744 45678999998887 45566555
No 17
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=67.02 E-value=14 Score=25.34 Aligned_cols=62 Identities=13% Similarity=0.176 Sum_probs=39.9
Q ss_pred EEEecccCCCchhHHHHHHHHHHcCCceEEee--------CCC--------CCCC-C-CchHHHHHHHHhcceEEEEeec
Q 031401 16 AFLSFRGEDTRKRFIGHLYTALNNKGIYVFRD--------DKQ--------LEKG-G-SISPNLLKTIEESRISIIVLSK 77 (160)
Q Consensus 16 VFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d--------~~d--------l~~G-~-~~~~~i~~~i~~S~~~I~vlS~ 77 (160)
||||.+..|. .-+..+...|...|++++-- +.. +..| . .-.++|...|.+-++-++|.+|
T Consensus 27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 9999988775 33556788898889887721 111 1112 1 0004678888888888888887
Q ss_pred CC
Q 031401 78 NY 79 (160)
Q Consensus 78 ~~ 79 (160)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 18
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=60.73 E-value=7.4 Score=23.87 Aligned_cols=38 Identities=18% Similarity=0.411 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCceEEeeCCCCC---CCCCchHHHHHHHHh
Q 031401 30 IGHLYTALNNKGIYVFRDDKQLE---KGGSISPNLLKTIEE 67 (160)
Q Consensus 30 v~~L~~~L~~~g~~v~~d~~dl~---~G~~~~~~i~~~i~~ 67 (160)
+..|...|+++|+.+|.+...+. |-..+..++...+..
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~ 47 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGG 47 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHH
Confidence 45688999999999999987764 444566677666644
No 19
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=55.20 E-value=17 Score=24.42 Aligned_cols=16 Identities=6% Similarity=0.000 Sum_probs=7.3
Q ss_pred HHHHHHHHHcCCceEE
Q 031401 30 IGHLYTALNNKGIYVF 45 (160)
Q Consensus 30 v~~L~~~L~~~g~~v~ 45 (160)
...+...+++..-.++
T Consensus 16 ~~~~~~~i~~A~~~I~ 31 (155)
T 1byr_A 16 RVLVLSAIDSAKTSIR 31 (155)
T ss_dssp HHHHHHHHHHCSSEEE
T ss_pred HHHHHHHHHHHhhEEE
Confidence 3445555554433333
No 20
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=42.55 E-value=16 Score=24.20 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=15.7
Q ss_pred cCHHHHHHHHHHHHHhhccc
Q 031401 134 DNIEKVQKWRYALKVVANIS 153 (160)
Q Consensus 134 ~~~~~~~~w~~al~~~~~~~ 153 (160)
++.+..+.|.+||..+++++
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 35788999999999998763
No 21
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=41.01 E-value=42 Score=23.37 Aligned_cols=75 Identities=12% Similarity=0.011 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHcCCc----eEEeeCCCCC---------C---CCCch----HHHHHHHHhcceEEEEeecCCcCChhHHH
Q 031401 28 RFIGHLYTALNNKGI----YVFRDDKQLE---------K---GGSIS----PNLLKTIEESRISIIVLSKNYASSTWCLD 87 (160)
Q Consensus 28 ~fv~~L~~~L~~~g~----~v~~d~~dl~---------~---G~~~~----~~i~~~i~~S~~~I~vlS~~~~~S~wc~~ 87 (160)
....++...|+..|. .++.=.++-. . +..+. +.-.++|++|+++|.++...- .+.-+..
T Consensus 19 ~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vvA~ldg~~-~D~GT~~ 97 (157)
T 1f8y_A 19 KAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIPDE-EDVGLGM 97 (157)
T ss_dssp HHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCGGG-CCHHHHH
T ss_pred HHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEEEEEcCCCC-CCccHHH
Confidence 457889999998885 5544322111 1 11122 333468999999999998433 4567899
Q ss_pred HHHHHHHHhhcCCcceeEE
Q 031401 88 ELLKIVECKNREDQIFPIF 106 (160)
Q Consensus 88 El~~~~~~~~~~~~IiPI~ 106 (160)
|+..|.. .++.|+-+.
T Consensus 98 EiGyA~A---~gkPVv~~~ 113 (157)
T 1f8y_A 98 ELGYALS---QGKYVLLVI 113 (157)
T ss_dssp HHHHHHH---TTCEEEEEE
T ss_pred HHHHHHH---CCCeEEEEE
Confidence 9998887 455655543
No 22
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=40.80 E-value=8.6 Score=24.31 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=17.8
Q ss_pred EEecccCCCchhHHHHHHHHHHcCC
Q 031401 17 FLSFRGEDTRKRFIGHLYTALNNKG 41 (160)
Q Consensus 17 FISy~~~D~~~~fv~~L~~~L~~~g 41 (160)
|+||++...+.-|+..|+..|++.+
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 4555655545568999999998754
No 23
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=40.21 E-value=60 Score=26.56 Aligned_cols=63 Identities=5% Similarity=0.046 Sum_probs=41.7
Q ss_pred CCcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecC
Q 031401 11 HGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKN 78 (160)
Q Consensus 11 ~~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~ 78 (160)
...+||+|..-+++. ...+..+...|.+.|++|-+|.++ ..+...+..+-..--..++|+.++
T Consensus 369 ~~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~~----~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 369 PTPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFEK----RQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp SCSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCSC----CCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeCC----CCHHHHHHHHHHcCCCEEEEECch
Confidence 345899987655443 355788999999999999998653 345555565544433455555544
No 24
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=39.82 E-value=91 Score=25.01 Aligned_cols=58 Identities=10% Similarity=0.206 Sum_probs=37.9
Q ss_pred cccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHH-hcceEEEEee
Q 031401 13 EYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIE-ESRISIIVLS 76 (160)
Q Consensus 13 ~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~I~vlS 76 (160)
.++|+|..-+++. ...+..|...|...|+++-+|.++ ..+...+..+-. .+.. ++|+.
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~~~-~iiiG 390 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIME----RGLSAQLKYASAIGADF-AVIFG 390 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCSC----CCHHHHHHHHHHTTCSE-EEEEE
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecCC----CCHHHHHHHHHHCCCCE-EEEEC
Confidence 4899876555443 355788999999999999998753 344445555433 4444 44444
No 25
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=38.36 E-value=7.7 Score=24.91 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=19.1
Q ss_pred CcccEEEecc---------cCCCchhHHHHHHHHHHcCC
Q 031401 12 GEYDAFLSFR---------GEDTRKRFIGHLYTALNNKG 41 (160)
Q Consensus 12 ~~yDVFISy~---------~~D~~~~fv~~L~~~L~~~g 41 (160)
..=|.+++|+ +...+.-|+..|+..|++.+
T Consensus 9 ~~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 9 VEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp TTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHhC
Confidence 3445555554 44444458889999998754
No 26
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=38.08 E-value=1.1e+02 Score=23.37 Aligned_cols=65 Identities=12% Similarity=-0.041 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHcCCceE-EeeCCCCCC--CC-----CchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHH
Q 031401 28 RFIGHLYTALNNKGIYV-FRDDKQLEK--GG-----SISPNLLKTIEESRISIIVLSKNYASSTWCLDELLKIVEC 95 (160)
Q Consensus 28 ~fv~~L~~~L~~~g~~v-~~d~~dl~~--G~-----~~~~~i~~~i~~S~~~I~vlS~~~~~S~wc~~El~~~~~~ 95 (160)
..++.+...|+..|..+ .+|-.++.. .+ .-..++.+.|..++ .|++.||.|..+- .-.+..++++
T Consensus 76 ~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~AD-giV~aSP~Yn~si--pg~LKn~IDr 148 (279)
T 2fzv_A 76 LAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSE-GQVWCSPERHGQI--TSVMKAQIDH 148 (279)
T ss_dssp HHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCS-EEEEEEEEETTEE--CHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCC-eEEEEcCccccCc--CHHHHHHHHH
Confidence 34566777777778765 345444431 11 11346778888998 5567888887652 2234444544
No 27
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=36.76 E-value=1.1e+02 Score=25.11 Aligned_cols=60 Identities=8% Similarity=-0.047 Sum_probs=39.8
Q ss_pred CcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEee
Q 031401 12 GEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLS 76 (160)
Q Consensus 12 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS 76 (160)
...||||...+++.. ..+-.+...|.+.|+++-++.. +.++...+..|-+.--..++++.
T Consensus 360 ~~~~v~v~~~~~~~~-~~a~~la~~LR~~Gi~ve~~~~----~~slkkq~k~A~k~ga~~vviiG 419 (456)
T 3lc0_A 360 HVVDDVVIPFDESMR-PHALAVLRRLRDAGRSADIILD----KKKVVQAFNYADRVGAVRAVLVA 419 (456)
T ss_dssp CCEEEEEEESSGGGH-HHHHHHHHHHHHTTCCEEECCS----CCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CCCcEEEEEcCHHHH-HHHHHHHHHHHHCCCeEEEecC----CCCHHHHHHHHHHcCCCEEEEEC
Confidence 457888876665542 3467799999999999988752 23465666666554444555554
No 28
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=36.50 E-value=7.4 Score=24.97 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=19.7
Q ss_pred CCcccEEEecc---------cCCCchhHHHHHHHHHHcCC
Q 031401 11 HGEYDAFLSFR---------GEDTRKRFIGHLYTALNNKG 41 (160)
Q Consensus 11 ~~~yDVFISy~---------~~D~~~~fv~~L~~~L~~~g 41 (160)
+..=|.+++|+ +.+.+.-|+..|++.|++.+
T Consensus 10 P~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 10 PDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp CTTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHG
T ss_pred CCCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHhC
Confidence 34557777665 33333458888999888644
No 29
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=36.26 E-value=96 Score=24.60 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=39.3
Q ss_pred CcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEee
Q 031401 12 GEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLS 76 (160)
Q Consensus 12 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS 76 (160)
..++|+|.--+++. ...+..|...|.+.|+++-+|.++ ..+...+..+-..---.++++.
T Consensus 297 ap~~v~vi~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~k~~~A~~~g~p~~iiiG 356 (401)
T 1evl_A 297 APVQVVIMNITDSQ-SEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVPYMLVCG 356 (401)
T ss_dssp CSSCEEEEESSGGG-HHHHHHHHHHHHHTTCCEEEECCS----SCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCeEEEEEecCHHH-HHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHhcCCCEEEEEC
Confidence 45899887555433 456788999999999999998753 3455566655443333444443
No 30
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=36.10 E-value=1e+02 Score=20.93 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHH-HhcceEEE
Q 031401 27 KRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTI-EESRISII 73 (160)
Q Consensus 27 ~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i-~~S~~~I~ 73 (160)
..++..+...|...|+++=+|.+ .+++.+...|.++- ++.-+.|+
T Consensus 21 ~~YA~~V~~~L~~~GiRvevD~~--r~~e~Lg~kIR~a~~~kvPy~lV 66 (130)
T 1v95_A 21 KDYAESVGRKVRDLGMVVDLIFL--NTEVSLSQALEDVSRGGSPFAIV 66 (130)
T ss_dssp GHHHHHHHHHHHTTTCCEEEEEC--TTSSCHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEecC--CCCCcHHHHHHHHHHcCCCEEEE
Confidence 57899999999999999998863 12455656666553 34444444
No 31
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=35.04 E-value=42 Score=27.42 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=37.3
Q ss_pred CcccEEEeccc-CC-CchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHH-hcceEEEEeec
Q 031401 12 GEYDAFLSFRG-ED-TRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIE-ESRISIIVLSK 77 (160)
Q Consensus 12 ~~yDVFISy~~-~D-~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~I~vlS~ 77 (160)
..++|+|.--. ++ .....+..|+..|...|+.|.+|.++-. +...+..+-. ... .++++.+
T Consensus 364 ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~----~g~k~~~ad~~g~p-~~iivG~ 427 (458)
T 2i4l_A 364 APFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQR----AGAKFATADLIGIP-WQIHVGP 427 (458)
T ss_dssp CSCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCC----HHHHHHHHHHHTCS-EEEEECH
T ss_pred CCceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCC----HHHHHHHHHhcCCC-EEEEECC
Confidence 35788876432 22 1235578899999999999999986533 3344444432 333 4444443
No 32
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=34.68 E-value=1.4e+02 Score=22.15 Aligned_cols=65 Identities=12% Similarity=-0.046 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHcCCceEE-eeCCCCCCC--C----CchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHH
Q 031401 28 RFIGHLYTALNNKGIYVF-RDDKQLEKG--G----SISPNLLKTIEESRISIIVLSKNYASSTWCLDELLKIVEC 95 (160)
Q Consensus 28 ~fv~~L~~~L~~~g~~v~-~d~~dl~~G--~----~~~~~i~~~i~~S~~~I~vlS~~~~~S~wc~~El~~~~~~ 95 (160)
..++.+...|+..|+.+- +|-.++..- + .-..++.+.|..++ .|++.||.|..+- .-.|..++++
T Consensus 52 ~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD-~iI~~sP~Yn~si--pa~LKn~iD~ 123 (247)
T 2q62_A 52 LLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSE-GQVWVSPERHGAM--TGIMKAQIDW 123 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCS-EEEEEEECSSSSC--CHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCC-EEEEEeCCCCCCc--cHHHHHHHHH
Confidence 446667777777787663 343333211 1 01356778888999 5667899887663 2334445554
No 33
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=34.49 E-value=9.6 Score=24.79 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=19.7
Q ss_pred CCcccEEEecc---------cCCCchhHHHHHHHHHHcCC
Q 031401 11 HGEYDAFLSFR---------GEDTRKRFIGHLYTALNNKG 41 (160)
Q Consensus 11 ~~~yDVFISy~---------~~D~~~~fv~~L~~~L~~~g 41 (160)
+..=|.+++|+ +...+.-|+..|+..|++.+
T Consensus 14 P~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 14 PVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp CTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 34456666665 33333458888999998654
No 34
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=34.21 E-value=1e+02 Score=24.77 Aligned_cols=60 Identities=15% Similarity=0.013 Sum_probs=38.7
Q ss_pred CCcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHH-hcceEEEEe
Q 031401 11 HGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIE-ESRISIIVL 75 (160)
Q Consensus 11 ~~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~I~vl 75 (160)
....||+|...+++. ...+..|...|.+.|+++-+|.. .+..+...+..|=. ... .++|+
T Consensus 364 ~~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~-~~vii 424 (464)
T 4g84_A 364 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIP-LVAII 424 (464)
T ss_dssp SCCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCSC---SSCCHHHHHHHHHHHTCC-EEEEC
T ss_pred cccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCC-EEEEE
Confidence 346789998766654 34477899999999999977642 23345555655544 344 34444
No 35
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=33.88 E-value=9.9 Score=24.81 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=15.5
Q ss_pred EecccCCCchhHHHHHHHHHHcCC
Q 031401 18 LSFRGEDTRKRFIGHLYTALNNKG 41 (160)
Q Consensus 18 ISy~~~D~~~~fv~~L~~~L~~~g 41 (160)
+||++...+.-|+..|+..|++.+
T Consensus 28 ~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 28 AAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp CCEEETTTEEHHHHHHHHHHHHHT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHC
Confidence 334444444458999999998754
No 36
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=32.26 E-value=31 Score=22.48 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.2
Q ss_pred cCHHHHHHHHHHHHHhhc
Q 031401 134 DNIEKVQKWRYALKVVAN 151 (160)
Q Consensus 134 ~~~~~~~~w~~al~~~~~ 151 (160)
++++..++|.+||..++.
T Consensus 89 ~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 89 SSAELQQQWLETLSTAAH 106 (112)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 357899999999998765
No 37
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=32.14 E-value=1.8e+02 Score=23.90 Aligned_cols=62 Identities=15% Similarity=0.008 Sum_probs=39.2
Q ss_pred CCcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEee
Q 031401 11 HGEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLS 76 (160)
Q Consensus 11 ~~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS 76 (160)
...+||||...+++. ...+..|...|.+.|+++-++.. .+..+...+..|=..--..++|+.
T Consensus 417 ~~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~~viiG 478 (517)
T 4g85_A 417 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIPLVAIIG 478 (517)
T ss_dssp SCCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECSS---SSCCHHHHHHHHHHHCCCEEEEEC
T ss_pred CCCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCCEEEEEC
Confidence 456899997665554 34577899999999999977642 233455566655443233444443
No 38
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=31.88 E-value=52 Score=27.36 Aligned_cols=61 Identities=11% Similarity=0.055 Sum_probs=38.4
Q ss_pred CcccEEEecc-c-CC--CchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHH-hcceEEEEeec
Q 031401 12 GEYDAFLSFR-G-ED--TRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIE-ESRISIIVLSK 77 (160)
Q Consensus 12 ~~yDVFISy~-~-~D--~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~I~vlS~ 77 (160)
..|+|+|--- . .+ .-...+..|...|...|++|-+|.++-.+| ..+..+-. ... .++++.+
T Consensus 313 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g----~k~~~a~~~G~p-~~iiiG~ 378 (501)
T 1nj1_A 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAG----RKYYEWEMRGVP-LRVEIGP 378 (501)
T ss_dssp SSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHH----HHHHHHHHEECS-EEEEECH
T ss_pred cCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHH----HHHHHHHhcCCC-EEEEECc
Confidence 4588887654 3 31 224568889999999999999998654334 44444433 333 4444444
No 39
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=31.27 E-value=96 Score=24.67 Aligned_cols=59 Identities=20% Similarity=0.357 Sum_probs=38.6
Q ss_pred CcccEEEecccCCCchhHHHHHHHHHHcC--CceEEeeCCCCCCCCCchHHHHHHHH-hcceEEEEee
Q 031401 12 GEYDAFLSFRGEDTRKRFIGHLYTALNNK--GIYVFRDDKQLEKGGSISPNLLKTIE-ESRISIIVLS 76 (160)
Q Consensus 12 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~--g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~I~vlS 76 (160)
..++|+|..-+++. ...+..|...|.+. |+++-+|.++ ..+...+..+-. ..... +++.
T Consensus 326 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p~~-iiiG 387 (423)
T 1htt_A 326 PVVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHGG----GNFKKQFARADKWGARVA-VVLG 387 (423)
T ss_dssp CSCSEEEEECSTTH-HHHHHHHHHHHHHHSTTCCEEECCSC----CCHHHHHHHHHHHTCSEE-EEEC
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHcCCCCcEEEEeCCC----CCHHHHHHHHHHcCCCEE-EEEC
Confidence 45799888755443 45578899999999 9999998754 344455555433 44444 4443
No 40
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.89 E-value=35 Score=21.69 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHhhcc
Q 031401 135 NIEKVQKWRYALKVVANI 152 (160)
Q Consensus 135 ~~~~~~~w~~al~~~~~~ 152 (160)
+++....|..||..++.+
T Consensus 104 s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 104 SPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 468899999999998865
No 41
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=30.33 E-value=35 Score=22.59 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=16.9
Q ss_pred cCHHHHHHHHHHHHHhhccc
Q 031401 134 DNIEKVQKWRYALKVVANIS 153 (160)
Q Consensus 134 ~~~~~~~~w~~al~~~~~~~ 153 (160)
++++..+.|.+||..++.+.
T Consensus 103 ~s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 103 NDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SSHHHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 35788999999999998874
No 42
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=29.51 E-value=45 Score=27.33 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=31.6
Q ss_pred CCCchhHHHHHHHHHHcCCceEEeeCCCCC----CCCCchHHHHHHHHhcceEE
Q 031401 23 EDTRKRFIGHLYTALNNKGIYVFRDDKQLE----KGGSISPNLLKTIEESRISI 72 (160)
Q Consensus 23 ~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~----~G~~~~~~i~~~i~~S~~~I 72 (160)
.|.|.+-+..|.+.|..+|+.|.+.+-.+. .|..+.+++.++++.|+++|
T Consensus 347 dD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv 400 (432)
T 3pid_A 347 DNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVII 400 (432)
T ss_dssp -----CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEE
T ss_pred cchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEE
Confidence 455555577899999999998877654433 23334467788888888754
No 43
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=28.97 E-value=43 Score=15.37 Aligned_cols=13 Identities=38% Similarity=0.813 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHh
Q 031401 137 EKVQKWRYALKVV 149 (160)
Q Consensus 137 ~~~~~w~~al~~~ 149 (160)
|.+++|.+-|...
T Consensus 8 DSV~rWmeDLr~M 20 (22)
T 3ro3_B 8 DSVQRWMEDLKLM 20 (26)
T ss_pred HHHHHHHHHHHhh
Confidence 7789999988754
No 44
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=28.17 E-value=15 Score=24.54 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=15.8
Q ss_pred EEecccCCCchhHHHHHHHHHHcCC
Q 031401 17 FLSFRGEDTRKRFIGHLYTALNNKG 41 (160)
Q Consensus 17 FISy~~~D~~~~fv~~L~~~L~~~g 41 (160)
|+||+....+.-|+..|+..|++.+
T Consensus 28 ~vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 28 YYSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEeCCCCCccHHHHHHHHHHhC
Confidence 3344444334458999999998654
No 45
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=27.42 E-value=44 Score=20.86 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=15.3
Q ss_pred cCHHHHHHHHHHHHHhhcc
Q 031401 134 DNIEKVQKWRYALKVVANI 152 (160)
Q Consensus 134 ~~~~~~~~w~~al~~~~~~ 152 (160)
++++...+|..||..++..
T Consensus 84 ~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 84 KSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp SSHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 3578899999999988753
No 46
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=26.60 E-value=15 Score=24.54 Aligned_cols=31 Identities=10% Similarity=0.208 Sum_probs=19.6
Q ss_pred CCcccEEEecc---------cCCCchhHHHHHHHHHHcCC
Q 031401 11 HGEYDAFLSFR---------GEDTRKRFIGHLYTALNNKG 41 (160)
Q Consensus 11 ~~~yDVFISy~---------~~D~~~~fv~~L~~~L~~~g 41 (160)
+..=|.+++|+ ....+.-|+..|+..|++.+
T Consensus 13 P~eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 13 PTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp CSSCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHhC
Confidence 34456666665 33334458888999998654
No 47
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=26.53 E-value=1e+02 Score=25.25 Aligned_cols=64 Identities=11% Similarity=0.176 Sum_probs=40.6
Q ss_pred CcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEee
Q 031401 12 GEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLS 76 (160)
Q Consensus 12 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS 76 (160)
...||+|..-+++. ...+..+...|.+.|++|-+|...=..+..+...+..+-..--..++|+.
T Consensus 353 ~p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG 416 (467)
T 4e51_A 353 EGVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFG 416 (467)
T ss_dssp CCCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 34789876544432 34578899999999999999864100245666677766544333444544
No 48
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=26.47 E-value=81 Score=25.98 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=30.4
Q ss_pred CcccEEEecccC-C---CchhHHHHHHHHHHcCCceEEeeCC-CCCCC
Q 031401 12 GEYDAFLSFRGE-D---TRKRFIGHLYTALNNKGIYVFRDDK-QLEKG 54 (160)
Q Consensus 12 ~~yDVFISy~~~-D---~~~~fv~~L~~~L~~~g~~v~~d~~-dl~~G 54 (160)
..++|+|---.+ | .-...+..|...|...|++|-+|.+ +-.+|
T Consensus 286 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~s~g 333 (477)
T 1hc7_A 286 APIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPG 333 (477)
T ss_dssp CSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHH
T ss_pred CCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCHH
Confidence 457888875443 2 1235678899999999999999986 44444
No 49
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=26.23 E-value=80 Score=25.09 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=37.5
Q ss_pred CcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEee
Q 031401 12 GEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLS 76 (160)
Q Consensus 12 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS 76 (160)
..++|+|..-+++. ...+..|...|...|++|-+|.++ ..+...+..+-..---.++++.
T Consensus 328 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p~~iiig 387 (420)
T 1qe0_A 328 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYLQ----RKIKGQMKQADRLGAKFTIVIG 387 (420)
T ss_dssp CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCSC----CCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecCC----CCHHHHHHHHHHcCCCEEEEEC
Confidence 45789877544332 345778999999999999998743 3444555554332222444444
No 50
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=25.15 E-value=1.2e+02 Score=21.34 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=23.5
Q ss_pred EEecccCCCc--hhHHHHHHHHHHcCCceEEee
Q 031401 17 FLSFRGEDTR--KRFIGHLYTALNNKGIYVFRD 47 (160)
Q Consensus 17 FISy~~~D~~--~~fv~~L~~~L~~~g~~v~~d 47 (160)
||.+-|-|.. ..-+..|.+.|+.+|+.+.+-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 8888777754 334677999999999988654
No 51
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=25.14 E-value=41 Score=21.69 Aligned_cols=17 Identities=35% Similarity=0.718 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHcCCceE
Q 031401 28 RFIGHLYTALNNKGIYV 44 (160)
Q Consensus 28 ~fv~~L~~~L~~~g~~v 44 (160)
.|+..|...|.++|++|
T Consensus 10 ~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 10 RYVEQLKQALKTRGVKV 26 (94)
T ss_pred HHHHHHHHHHHHcCeee
Confidence 68999999999999999
No 52
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=24.88 E-value=45 Score=21.98 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=26.4
Q ss_pred ecCchhhhcccchHHHHHHHHHHhhccCHHHHHHHHHHHHHhhccc
Q 031401 108 EVEPTVVRKQTASFGEAFAKYEEFFRDNIEKVQKWRYALKVVANIS 153 (160)
Q Consensus 108 ~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~ 153 (160)
++.|.........+-.++.++... -+++...-|.+++..+++.-
T Consensus 85 gV~p~~f~~~~~~Ll~~l~~lg~~--~t~e~~~AW~~~~~~~a~~l 128 (134)
T 1tu9_A 85 DIRPELYDLWLDALLMAVAEHDRD--CDAETRDAWRDVMGRGIAVI 128 (134)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHHH
Confidence 456666555433333444441111 24788899999999888653
No 53
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.29 E-value=56 Score=21.33 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=16.8
Q ss_pred cCHHHHHHHHHHHHHhhcccc
Q 031401 134 DNIEKVQKWRYALKVVANISG 154 (160)
Q Consensus 134 ~~~~~~~~w~~al~~~~~~~G 154 (160)
++++..+.|.+||..+...+.
T Consensus 97 ~s~~e~~~Wi~al~~a~~~~~ 117 (130)
T 2d9v_A 97 ETRDDAIAWKTALMEANSTPA 117 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCC
Confidence 357889999999999887553
No 54
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=23.71 E-value=80 Score=25.80 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=39.8
Q ss_pred cCCCchhHHHHHHHHHHcCCceEEeeCCCCC-------CCCCchHHHHHHHHhcceEEEEee-cCCcC
Q 031401 22 GEDTRKRFIGHLYTALNNKGIYVFRDDKQLE-------KGGSISPNLLKTIEESRISIIVLS-KNYAS 81 (160)
Q Consensus 22 ~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~-------~G~~~~~~i~~~i~~S~~~I~vlS-~~~~~ 81 (160)
..|.|.+-+-.|...|.+.|..|...+-... ++-.+.+...++++.++.+|++.. +.|..
T Consensus 336 ~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~ 403 (446)
T 4a7p_A 336 TDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTEWDAFRA 403 (446)
T ss_dssp SCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSCCTTTTS
T ss_pred CcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeCCHHhhc
Confidence 3555655577899999999999977653331 344555677889999987554433 33544
No 55
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=23.68 E-value=55 Score=24.06 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=47.1
Q ss_pred CCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHHhhcCCcceeEEee
Q 031401 40 KGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDELLKIVECKNREDQIFPIFYE 108 (160)
Q Consensus 40 ~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~wc~~El~~~~~~~~~~~~IiPI~~~ 108 (160)
..|.||+-.+.-.....+...|..++++..+.+++=..++..+.....++..+++ .....|.||-.
T Consensus 34 ~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe---~Sri~IvV~S~ 99 (204)
T 3ozi_A 34 VEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAID---QSKIYVPIISS 99 (204)
T ss_dssp CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHH---HCSEEEEEECT
T ss_pred cCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHH---hCcEeeEEEEc
Confidence 4688999765333344677899999998887777766777777766678888887 35566777643
No 56
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=23.51 E-value=56 Score=20.07 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=14.0
Q ss_pred cCHHHHHHHHHHHHHhh
Q 031401 134 DNIEKVQKWRYALKVVA 150 (160)
Q Consensus 134 ~~~~~~~~w~~al~~~~ 150 (160)
++++....|..||..++
T Consensus 92 ~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 92 ATPKERTEWIKAIQMAS 108 (109)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 34688999999999875
No 57
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=23.31 E-value=56 Score=20.32 Aligned_cols=17 Identities=12% Similarity=0.546 Sum_probs=14.0
Q ss_pred cCHHHHHHHHHHHHHhh
Q 031401 134 DNIEKVQKWRYALKVVA 150 (160)
Q Consensus 134 ~~~~~~~~w~~al~~~~ 150 (160)
++++....|..||.++.
T Consensus 94 ~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 94 ESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 34788999999999875
No 58
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=23.09 E-value=3.7e+02 Score=23.34 Aligned_cols=77 Identities=10% Similarity=0.182 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecC----C------------cCChhHHHHHHHHH
Q 031401 30 IGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKN----Y------------ASSTWCLDELLKIV 93 (160)
Q Consensus 30 v~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~----~------------~~S~wc~~El~~~~ 93 (160)
.+-|..++...|..+.++..+ ...+..++.++++++|+++... + +.=+..+.||..++
T Consensus 396 ~~~i~~~~~~~g~~v~~~~~~------~~~~a~~~A~~aDv~Iv~vg~~~gEg~~~~~g~~gDR~~l~Lp~~Q~~Li~~v 469 (713)
T 3zyz_A 396 YDAINTRASSQGTQVTLSNTD------NTSSGASAARGKDVAIVFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQAV 469 (713)
T ss_dssp HHHHHHHHHTTTCEEEEECSC------CHHHHHHHHTTCSEEEEEEEECCBCTTCCBTTBCSSCSCSSCSTTHHHHHHHH
T ss_pred HHHHHHHhccCCeEEEEeCCc------cHHHHHHHhhcCCEEEEEecccCCCCccccccCCCCcccccCChhHHHHHHHH
Confidence 455777777778877765432 2345566778999999999532 2 22234566776666
Q ss_pred HHhhcCCcceeEEeecCchhh
Q 031401 94 ECKNREDQIFPIFYEVEPTVV 114 (160)
Q Consensus 94 ~~~~~~~~IiPI~~~~~p~~v 114 (160)
.. .+.++|.|+....|-++
T Consensus 470 ~~--~~~~~VVVl~sG~p~~~ 488 (713)
T 3zyz_A 470 AG--ANSNVIVVVHSVGAIIL 488 (713)
T ss_dssp HH--HCSCEEEEEEESSCCCC
T ss_pred HH--hCCCeEEEEecCCcccc
Confidence 53 45677777776666554
No 59
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=23.08 E-value=2.7e+02 Score=22.94 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=33.1
Q ss_pred CCchhHHHHHHHHHHcCCceEE--eeCC-CCCCCCCchHHHHHHHHhcceEEEEeecCCcC
Q 031401 24 DTRKRFIGHLYTALNNKGIYVF--RDDK-QLEKGGSISPNLLKTIEESRISIIVLSKNYAS 81 (160)
Q Consensus 24 D~~~~fv~~L~~~L~~~g~~v~--~d~~-dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~ 81 (160)
+.-..++..|...|++.|++|. +|++ +-.+| ..+..+=..---.++++.++-+.
T Consensus 361 e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr~~~siG----kK~r~Ad~iGiPy~IiVG~kEle 417 (459)
T 3ikl_A 361 LELRQVCQGLFNELLENGISVWPGYLETMQSSLE----QLYSKYDEMSILFTVLVTETTLE 417 (459)
T ss_dssp TTHHHHHHHHHHHHHHTSCCEECGGGSSSCCTTH----HHHHHHGGGTCSEEEEECTTSTT
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeecCCcCCCHH----HHHHHHHHcCCCEEEEECchhhh
Confidence 3335678899999999999999 7765 44444 34444433222355556655443
No 60
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=22.59 E-value=1.6e+02 Score=22.92 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=30.2
Q ss_pred EEEecccCCCchh---HHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHH-hcceEEE
Q 031401 16 AFLSFRGEDTRKR---FIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIE-ESRISII 73 (160)
Q Consensus 16 VFISy~~~D~~~~---fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~I~ 73 (160)
|.|-|...+-... +...|...|++.|+.+-... -...+..-...+.+.|+ +++++|+
T Consensus 157 v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~d~~~~l~~i~~~~~vii~ 217 (441)
T 1jdp_A 157 AALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYS-FDETKDLDLEDIVRNIQASERVVIM 217 (441)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEEE-ECTTSCCCHHHHHHHHHHHCSEEEE
T ss_pred EEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEEEE-ecCCcccCHHHHHHHhhcCCcEEEE
Confidence 5555555443445 67778888888888765432 12223222334445554 4444443
No 61
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=22.32 E-value=59 Score=20.16 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=14.8
Q ss_pred cCHHHHHHHHHHHHHhhc
Q 031401 134 DNIEKVQKWRYALKVVAN 151 (160)
Q Consensus 134 ~~~~~~~~w~~al~~~~~ 151 (160)
++++....|..||..++.
T Consensus 86 ~s~~e~~~Wi~al~~a~~ 103 (109)
T 1wgq_A 86 DDAHSTQRWIDAFQEGTV 103 (109)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 346889999999998864
No 62
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=22.32 E-value=60 Score=20.50 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=15.4
Q ss_pred cCHHHHHHHHHHHHHhhcccce
Q 031401 134 DNIEKVQKWRYALKVVANISGW 155 (160)
Q Consensus 134 ~~~~~~~~w~~al~~~~~~~G~ 155 (160)
++++....|..||..+....+-
T Consensus 92 ~s~~e~~~Wi~al~~a~~~~~~ 113 (123)
T 1upq_A 92 DTLEDLRGWLRALGRASRAEGD 113 (123)
T ss_dssp SSHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHHHhcccC
Confidence 3468899999999999876543
No 63
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=21.67 E-value=83 Score=19.95 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=15.5
Q ss_pred cCHHHHHHHHHHHHHhhcc
Q 031401 134 DNIEKVQKWRYALKVVANI 152 (160)
Q Consensus 134 ~~~~~~~~w~~al~~~~~~ 152 (160)
++++..+.|.+||..++..
T Consensus 102 ~s~~e~~~Wi~al~~a~~~ 120 (128)
T 2dkp_A 102 DTGKEMELWMKAMLDAALV 120 (128)
T ss_dssp SSHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 3478899999999988764
No 64
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=21.19 E-value=1.6e+02 Score=22.32 Aligned_cols=76 Identities=13% Similarity=0.147 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCCcCChhHHHHHHHHHHH-hhcCCcceeE
Q 031401 27 KRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNYASSTWCLDELLKIVEC-KNREDQIFPI 105 (160)
Q Consensus 27 ~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~~~S~wc~~El~~~~~~-~~~~~~IiPI 105 (160)
-.++.++...|...|+.+-...+.+..|.-. -+...-.+.++=||-+|-+...+.--..++..++.. +. +.|+.|
T Consensus 95 peLA~~i~~~l~~~g~~~~~~~~glDHG~~v--PL~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lrd--~~VlIi 170 (271)
T 2pw6_A 95 PALAQRLVELLAPIPVTLDKEAWGFDHGSWG--VLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRD--EGIMLV 170 (271)
T ss_dssp HHHHHHHHHHHTTSCEEEESSCCCCCHHHHH--HHHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGGG--GTEEEE
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchhh--hHHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH--cCcEEE
Confidence 4788999999999999776555566655422 233333456677888888866677666788888876 43 345554
Q ss_pred E
Q 031401 106 F 106 (160)
Q Consensus 106 ~ 106 (160)
=
T Consensus 171 g 171 (271)
T 2pw6_A 171 A 171 (271)
T ss_dssp E
T ss_pred E
Confidence 3
No 65
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=21.08 E-value=84 Score=26.87 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=38.0
Q ss_pred CcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHH-hcceEEEEee
Q 031401 12 GEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIE-ESRISIIVLS 76 (160)
Q Consensus 12 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~I~vlS 76 (160)
..++|+|---.++.....+..|...|.+.|++|-+|.++ ..+...+..+-. ... .++|+.
T Consensus 544 ap~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~----~~~g~k~~~a~~~g~p-~~iivG 604 (645)
T 1nyr_A 544 APKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRN----EKMGYKIREAQMQKIP-YQIVVG 604 (645)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSS----CCHHHHHHHHHHHTCS-EEEEEC
T ss_pred CCceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECCC----CCHHHHHHHHHhcCCC-EEEEEc
Confidence 347887764331222456888999999999999999764 345555555533 444 444444
No 66
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=20.97 E-value=1.5e+02 Score=25.82 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=40.5
Q ss_pred cccEEEecccCC-CchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecC
Q 031401 13 EYDAFLSFRGED-TRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKN 78 (160)
Q Consensus 13 ~yDVFISy~~~D-~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~ 78 (160)
.++|+|---+++ .-...+..|...|.+.|+++.+|.++ .++...+..+=..---.++++.++
T Consensus 559 P~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~~----~sigkk~k~Ad~~G~p~~IiIG~~ 621 (693)
T 2zt5_A 559 PFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSS----GSIGRRYARTDEIGVAFGVTIDFD 621 (693)
T ss_dssp SCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCCC----SCHHHHHHHHHHTTCCEEEEECHH
T ss_pred CCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEEcch
Confidence 488987765543 22466888999999999999999754 345555555544333345555443
No 67
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=20.87 E-value=1.9e+02 Score=19.08 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=19.5
Q ss_pred CCC-CchHHHHHHHHhcceEEEEeecCCc
Q 031401 53 KGG-SISPNLLKTIEESRISIIVLSKNYA 80 (160)
Q Consensus 53 ~G~-~~~~~i~~~i~~S~~~I~vlS~~~~ 80 (160)
+|. .+.......++.++.+|+|++-.-.
T Consensus 74 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 102 (183)
T 3kkq_A 74 AGQEEFSAMREQYMRTGDGFLIVYSVTDK 102 (183)
T ss_dssp CSCGGGCSSHHHHHHHCSEEEEEEETTCH
T ss_pred CCchhhHHHHHHHHhcCCEEEEEEECCCH
Confidence 443 3334455678899999999987643
No 68
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=20.72 E-value=1e+02 Score=26.47 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=40.3
Q ss_pred CcccEEEecccCCCchhHHHHHHHHHHcCCceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEeecCC
Q 031401 12 GEYDAFLSFRGEDTRKRFIGHLYTALNNKGIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVLSKNY 79 (160)
Q Consensus 12 ~~yDVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vlS~~~ 79 (160)
..++|+|---..+ ....+..|...|...|++|-+|.++ ..+...+.++-..---.++|+.++-
T Consensus 538 aP~qv~vipi~~~-~~~~a~~v~~~L~~~Gi~v~~D~~~----~~~g~kir~a~~~g~p~~ivvG~~E 600 (642)
T 1qf6_A 538 APVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVPYMLVCGDKE 600 (642)
T ss_dssp CSSCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEECCS----SCHHHHHHHHHHTTCSEEEEECTTT
T ss_pred CCceEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEECchh
Confidence 3578877643322 2456888999999999999999864 3444555555333333455555543
No 69
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=20.67 E-value=1.3e+02 Score=24.45 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=36.7
Q ss_pred cCCCchhHHHHHHHHHHcC-CceEEeeCCCCCCCCCchHHHHHHHHhcceEEEEe
Q 031401 22 GEDTRKRFIGHLYTALNNK-GIYVFRDDKQLEKGGSISPNLLKTIEESRISIIVL 75 (160)
Q Consensus 22 ~~D~~~~fv~~L~~~L~~~-g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~I~vl 75 (160)
..|.|.+-+-.|...|.++ |+.|.+.+-..... .....+.++++.++.+|+..
T Consensus 329 tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~ad~vvi~t 382 (431)
T 3ojo_A 329 VDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-FVEHDMSHAVKDASLVLILS 382 (431)
T ss_dssp SCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-TBCSTTHHHHTTCSEEEECS
T ss_pred CcchhcChHHHHHHHHHhhcCCEEEEECCCcccc-cccCCHHHHHhCCCEEEEec
Confidence 3566666678899999999 99998776444332 23355678899998755443
No 70
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.31 E-value=71 Score=19.88 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHhhcc
Q 031401 135 NIEKVQKWRYALKVVANI 152 (160)
Q Consensus 135 ~~~~~~~w~~al~~~~~~ 152 (160)
+++....|.+||..+...
T Consensus 93 s~~e~~~Wi~al~~~~~~ 110 (117)
T 2d9y_A 93 SPEEQEAWIQAMGEAARV 110 (117)
T ss_dssp SHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 468899999999998764
No 71
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=20.04 E-value=1.7e+02 Score=19.73 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=24.0
Q ss_pred ceEEEEeecCCcCChhHHHHHH---HHHHH-hhcCCcceeEEeecCch
Q 031401 69 RISIIVLSKNYASSTWCLDELL---KIVEC-KNREDQIFPIFYEVEPT 112 (160)
Q Consensus 69 ~~~I~vlS~~~~~S~wc~~El~---~~~~~-~~~~~~IiPI~~~~~p~ 112 (160)
+++|+.+--... ..||..++. .+.+. ...+..|..|+..++|.
T Consensus 33 k~vll~F~~t~C-p~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 33 KVWVADFMFTNC-QTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp SCEEEEEECTTC-SSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CEEEEEEECCCC-CCcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 455554432222 247865554 44444 44566788888877764
Done!