Query 031402
Match_columns 160
No_of_seqs 201 out of 1164
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 21:54:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031402.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031402hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gcca_ d.10.1.2 (A:) GCC-box 99.9 3.3E-27 2.4E-31 158.4 6.3 62 23-84 2-63 (63)
2 d1zj8a1 d.58.36.1 (A:327-406) 36.5 40 0.0029 20.3 5.6 39 23-71 4-42 (80)
3 d1utaa_ d.58.52.1 (A:) Cell di 32.5 14 0.00098 22.5 2.5 25 45-69 40-64 (77)
4 d1qnaa1 d.129.1.1 (A:17-115) T 28.3 63 0.0046 20.6 5.5 49 20-72 37-86 (99)
5 d1aisa1 d.129.1.1 (A:1-92) TAT 24.0 71 0.0051 20.0 5.0 49 19-71 38-87 (92)
6 d2j01q1 d.41.4.2 (Q:6-141) Rib 23.5 50 0.0036 22.7 4.4 34 35-72 88-121 (136)
7 d1mp9a1 d.129.1.1 (A:5-96) TAT 18.9 1E+02 0.0076 19.1 5.7 49 19-71 38-87 (92)
8 d1vqoh1 d.41.4.1 (H:1-163) Rib 17.6 62 0.0045 22.9 3.9 33 35-71 123-157 (163)
9 d1mp9a2 d.129.1.1 (A:97-197) T 15.8 1.3E+02 0.0097 18.9 5.2 49 20-72 38-87 (101)
10 d1aisa2 d.129.1.1 (A:93-181) T 14.8 1.3E+02 0.0097 18.5 5.3 49 19-71 37-86 (89)
No 1
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.93 E-value=3.3e-27 Score=158.38 Aligned_cols=62 Identities=69% Similarity=1.227 Sum_probs=59.0
Q ss_pred ceeeeEECCCCeEEEEEecCCCCCeEeeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCCc
Q 031402 23 RYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPNEG 84 (160)
Q Consensus 23 ~yrGV~~r~~Gkw~A~I~~~~~~gkri~LGtF~t~eeAA~AYd~aa~~~~G~~a~~NFp~~~ 84 (160)
+||||+++++|||.|+|+++..+++++|||+|+|+||||+|||.|++.++|.++.+|||.++
T Consensus 2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~~ 63 (63)
T d1gcca_ 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCccC
Confidence 59999999999999999998888999999999999999999999999999999999999763
No 2
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=36.47 E-value=40 Score=20.28 Aligned_cols=39 Identities=15% Similarity=0.046 Sum_probs=26.4
Q ss_pred ceeeeEECCCCeEEEEEecCCCCCeEeeccCCCCHHHHHHHHHHHHHhh
Q 031402 23 RYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAF 71 (160)
Q Consensus 23 ~yrGV~~r~~Gkw~A~I~~~~~~gkri~LGtF~t~eeAA~AYd~aa~~~ 71 (160)
-+.||+..+.|+|..+|+.+ .|.- |.+.....-| .+.+|
T Consensus 4 dh~Gv~~q~dG~~~vri~~p--~G~i-------t~~ql~~la~-ia~~y 42 (80)
T d1zj8a1 4 DHVGVQRLKNGLNAVGVAPI--AGRV-------SGTILTAVAD-LMARA 42 (80)
T ss_dssp CCCEEEECTTSSEEEEEBCB--TTEE-------EHHHHHHHHH-HHHHH
T ss_pred CcceEeeecCCcEEEEEecc--CcEE-------CHHHHHHHHH-HHHHh
Confidence 46799988889999999975 4432 6666654444 44444
No 3
>d1utaa_ d.58.52.1 (A:) Cell division protein FtsN {Escherichia coli [TaxId: 562]}
Probab=32.47 E-value=14 Score=22.49 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=20.2
Q ss_pred CCeEeeccCCCCHHHHHHHHHHHHH
Q 031402 45 NGTRLWLGTFSTAEEAARAYDRAAF 69 (160)
Q Consensus 45 ~gkri~LGtF~t~eeAA~AYd~aa~ 69 (160)
.-.||.+|-|.+.++|..+.++...
T Consensus 40 ~~yRV~vGpf~~~~~A~~~~~~L~~ 64 (77)
T d1utaa_ 40 GWNRVVIGPVKGKENADSTLNRLKM 64 (77)
T ss_dssp SSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHH
Confidence 3478999999999999988776543
No 4
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=28.33 E-value=63 Score=20.63 Aligned_cols=49 Identities=18% Similarity=0.128 Sum_probs=37.2
Q ss_pred CCCceeeeEECCC-CeEEEEEecCCCCCeEeeccCCCCHHHHHHHHHHHHHhhc
Q 031402 20 SEVRYRGIRRRAW-GKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFR 72 (160)
Q Consensus 20 ~~S~yrGV~~r~~-Gkw~A~I~~~~~~gkri~LGtF~t~eeAA~AYd~aa~~~~ 72 (160)
+..+|.|+.+|-. -+=.+-|. ..||-+-.|.- +.|+|..|..+.+..+.
T Consensus 37 ePe~fpgli~R~~~P~~t~lIF---~SGKivitGak-s~~~~~~a~~~i~~~l~ 86 (99)
T d1qnaa1 37 NPKRFAAVIMRIREPKTTALIF---ASGKMVCTGAK-SEDFSKMAARKYARIVQ 86 (99)
T ss_dssp CTTTCSEEEEEETTTTEEEEEE---TTSEEEEEEES-SHHHHHHHHHHHHHHHH
T ss_pred CcccCCEEEEEeCCCcEEEEEE---cCCEEEEeccC-CHHHHHHHHHHHHHHHH
Confidence 4568899876644 35566666 47898888886 89999999988887775
No 5
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=24.00 E-value=71 Score=20.00 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=35.1
Q ss_pred CCCCceeeeEECCC-CeEEEEEecCCCCCeEeeccCCCCHHHHHHHHHHHHHhh
Q 031402 19 VSEVRYRGIRRRAW-GKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAF 71 (160)
Q Consensus 19 ~~~S~yrGV~~r~~-Gkw~A~I~~~~~~gkri~LGtF~t~eeAA~AYd~aa~~~ 71 (160)
=+..+|.|+.+|-. -+-..-|. ..||-+-.|. .|.|||..|+......+
T Consensus 38 YePe~fpgl~~R~~~p~~~~lIF---~sGkivitGa-kS~~~~~~a~~~i~~~l 87 (92)
T d1aisa1 38 YNPEEFPGIICHLDDPKVALLIF---SSGKLVVTGA-KSVQDIERAVAKLAQKL 87 (92)
T ss_dssp CCTTTCSSEEEECSSSCCEEEEC---TTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred ECcccCCeEEEEeCCCcEEEEEE---CCCEEEEEcc-CCHHHHHHHHHHHHHHH
Confidence 35568999986644 34445555 4688887776 48999999998877655
No 6
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]}
Probab=23.47 E-value=50 Score=22.67 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=26.8
Q ss_pred EEEEEecCCCCCeEeeccCCCCHHHHHHHHHHHHHhhc
Q 031402 35 FAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFR 72 (160)
Q Consensus 35 w~A~I~~~~~~gkri~LGtF~t~eeAA~AYd~aa~~~~ 72 (160)
|++.|.. |+-++=-.--++++|..|...|+.++-
T Consensus 88 wv~~Vk~----G~ilfEi~gv~~~~a~~al~~a~~KLP 121 (136)
T d2j01q1 88 YVAVVKP----GRVMFEVAGVTEEQAMEALRIAGHKLP 121 (136)
T ss_dssp EEEEECT----TCEEEEEESSCHHHHHHHHHHHHHHSS
T ss_pred EEEEecC----CcEEEEEcCCCHHHHHHHHHHHHhhCC
Confidence 9999994 666654334789999999999998873
No 7
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=18.87 E-value=1e+02 Score=19.08 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=35.5
Q ss_pred CCCCceeeeEECCC-CeEEEEEecCCCCCeEeeccCCCCHHHHHHHHHHHHHhh
Q 031402 19 VSEVRYRGIRRRAW-GKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAF 71 (160)
Q Consensus 19 ~~~S~yrGV~~r~~-Gkw~A~I~~~~~~gkri~LGtF~t~eeAA~AYd~aa~~~ 71 (160)
=+..+|.|+.+|-. -+-.+-|. ..||-+-.|. .+.+||..|+.+....+
T Consensus 38 YePe~fpgli~R~~~p~~t~lIF---~SGkivitGa-ks~~~~~~a~~~~~~~L 87 (92)
T d1mp9a1 38 YDPDQFPGLIFRLESPKITSLIF---KSGKMVVTGA-KSTDELIKAVKRIIKTL 87 (92)
T ss_dssp CCTTTCSSEEEEETTTTEEEEEC---TTSEEEEECC-SSHHHHHHHHHHHHHHH
T ss_pred ECCccCceEEEEECCCcEEEEEE---cCCEEEEEcc-CCHHHHHHHHHHHHHHH
Confidence 34578999876643 45555666 4788888886 48999999998877655
No 8
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=17.55 E-value=62 Score=22.87 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=24.9
Q ss_pred EEEEEecCCCCCeEeec--cCCCCHHHHHHHHHHHHHhh
Q 031402 35 FAAEIRDPTRNGTRLWL--GTFSTAEEAARAYDRAAFAF 71 (160)
Q Consensus 35 w~A~I~~~~~~gkri~L--GtF~t~eeAA~AYd~aa~~~ 71 (160)
|+|+|.. |+.++- |.-.+++.|..|..+|+.+|
T Consensus 123 ~aArVk~----G~ilfei~~~~~~~~~akeALr~A~~KL 157 (163)
T d1vqoh1 123 TAARVQA----GEQLFTAYCNVEDAEHVKEAFRRAYNKI 157 (163)
T ss_dssp EEEEECT----TCEEEEEEECSTTHHHHHHHHHHHGGGS
T ss_pred EEEEECC----CCEEEEEEeccccHHHHHHHHHHHhccC
Confidence 9999994 666654 34456788999999988775
No 9
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=15.77 E-value=1.3e+02 Score=18.93 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=35.8
Q ss_pred CCCceeeeEECCC-CeEEEEEecCCCCCeEeeccCCCCHHHHHHHHHHHHHhhc
Q 031402 20 SEVRYRGIRRRAW-GKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFR 72 (160)
Q Consensus 20 ~~S~yrGV~~r~~-Gkw~A~I~~~~~~gkri~LGtF~t~eeAA~AYd~aa~~~~ 72 (160)
+...|.|+.+|-. -+-.+.|. ..||-+-.|.= |.+++..|+.+....+.
T Consensus 38 ePe~fpgli~R~~~pk~t~lIF---~SGKivitGak-s~~~~~~a~~~i~~~L~ 87 (101)
T d1mp9a2 38 EPEQFPGLIYRMDEPRVVLLIF---SSGKMVITGAK-REDEVHKAVKKIFDKLV 87 (101)
T ss_dssp CTTTCSSEEEEETTTTEEEEEC---TTSEEEEEEES-SHHHHHHHHHHHHHHHH
T ss_pred CcccCCeEEEEecCCcEEEEEE---cCCEEEEEccC-CHHHHHHHHHHHHHHHH
Confidence 4568999876543 35566666 46888888864 89999999988766654
No 10
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=14.79 E-value=1.3e+02 Score=18.47 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=35.0
Q ss_pred CCCCceeeeEECCC-CeEEEEEecCCCCCeEeeccCCCCHHHHHHHHHHHHHhh
Q 031402 19 VSEVRYRGIRRRAW-GKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAF 71 (160)
Q Consensus 19 ~~~S~yrGV~~r~~-Gkw~A~I~~~~~~gkri~LGtF~t~eeAA~AYd~aa~~~ 71 (160)
=+...|.||.+|-. -+=.+-|. ..|+-+-.|.= +.++|..|+......+
T Consensus 37 Y~Pe~fpgli~R~~~p~~t~lIF---~SGKivitGak-s~~~~~~a~~~i~~~L 86 (89)
T d1aisa2 37 YEPEQFPGVIYRVKEPKSVILLF---SSGKIVCSGAK-SEADAWEAVRKLLREL 86 (89)
T ss_dssp CCTTTCSSEEEEETTTTEEEEEC---TTSEEEEEEES-SHHHHHHHHHHHHHHH
T ss_pred ECcccCceEEEEEcCCcEEEEEE---cCCEEEEEccC-CHHHHHHHHHHHHHHH
Confidence 34568999876643 34455555 47899888874 8999999998876654
Done!