Query 031403
Match_columns 160
No_of_seqs 113 out of 773
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 21:55:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_A Vesicle-associated memb 100.0 6E-50 2.1E-54 293.6 7.6 153 3-157 1-153 (189)
2 2nut_C Vesicle-trafficking pro 100.0 3E-42 1E-46 254.3 11.9 150 5-157 2-162 (196)
3 4afi_A AP-3 complex subunit de 100.0 2.5E-39 8.6E-44 233.2 15.0 120 3-123 53-172 (173)
4 2vx8_A Nucleoporin-like protei 100.0 2.4E-34 8.1E-39 206.6 12.6 121 3-124 43-163 (169)
5 3kyq_A YKT6, synaptobrevin hom 100.0 2.6E-34 8.8E-39 211.6 4.7 149 3-156 1-165 (199)
6 3bw6_A Synaptobrevin homolog Y 100.0 5E-28 1.7E-32 170.0 12.3 123 4-130 5-144 (144)
7 1gl2_A Endobrevin; membrane pr 99.0 1.9E-10 6.6E-15 69.5 3.1 34 124-157 4-37 (65)
8 1n7s_A Vesicle-associated memb 98.9 6E-10 2.1E-14 66.9 3.8 30 128-157 3-32 (63)
9 3b5n_A Synaptobrevin homolog 1 98.9 1.5E-09 5.3E-14 64.7 4.0 29 129-157 2-30 (61)
10 2nps_A VAMP-4, vesicle-associa 98.9 2.5E-10 8.6E-15 70.8 0.3 34 124-157 3-36 (74)
11 1l4a_A Synaptobrevin; snare, s 98.8 1.1E-09 3.8E-14 68.8 2.6 33 125-157 11-43 (80)
12 1sfc_A VAMP 2, protein (synapt 98.8 4.8E-09 1.6E-13 68.1 3.7 30 128-157 29-58 (96)
13 3hd7_A Vesicle-associated memb 98.7 9.6E-09 3.3E-13 66.1 3.9 29 128-156 4-32 (91)
14 3fie_C Fragment of vesicle-ass 98.6 7E-12 2.4E-16 67.6 -10.7 29 129-157 9-37 (38)
15 2kog_A Vesicle-associated memb 98.6 1.2E-08 4E-13 68.7 1.8 30 128-157 32-61 (119)
16 1urq_A M-tomosyn isoform; tran 98.4 1.4E-07 4.7E-12 56.3 2.9 29 129-157 4-32 (63)
17 3zym_A Phosphatidylinositol-bi 98.4 9E-08 3.1E-12 74.5 1.9 52 106-157 243-308 (310)
18 2fh5_A Signal recognition part 97.9 1.9E-05 6.6E-10 56.7 5.8 87 6-94 12-104 (185)
19 2fz0_A R-snare NYV1P, V-snare 96.3 0.011 3.7E-07 39.9 5.9 87 1-87 1-114 (149)
20 1w63_M Adaptor-related protein 91.5 0.98 3.3E-05 36.1 8.5 90 4-93 1-95 (423)
21 1w63_Q Adapter-related protein 90.8 2.9 9.8E-05 28.7 11.0 49 46-94 48-96 (158)
22 2vgl_M AP-2 complex subunit MU 90.1 5.4 0.00019 31.9 11.7 49 46-94 46-94 (435)
23 3tjz_C Coatomer subunit zeta-1 89.8 3.5 0.00012 28.2 11.5 88 5-93 12-105 (153)
24 2vgl_S AP-2 complex subunit si 86.0 5.9 0.0002 26.5 12.4 48 46-93 48-95 (142)
25 1ccd_A Clara cell 17 KD protei 85.8 1.4 4.8E-05 26.7 4.4 46 112-157 21-66 (77)
26 1utg_A Uteroglobin; steroid bi 84.8 1.2 4.1E-05 26.5 3.7 46 112-157 19-64 (70)
27 3cue_C Transport protein parti 83.4 8 0.00028 26.6 8.0 86 33-121 52-156 (159)
28 3cue_A Transport protein parti 76.4 20 0.00067 26.1 9.3 77 44-121 118-218 (219)
29 2j3t_D Trafficking protein par 75.3 21 0.00072 26.0 11.1 87 33-122 119-210 (219)
30 4a4y_A Protein MXIG; protein b 74.1 5.9 0.0002 25.3 4.5 41 6-58 86-126 (146)
31 1utr_A Uteroglobin; clara cell 73.5 2.2 7.4E-05 27.0 2.4 45 113-157 41-85 (96)
32 2j3w_A Sedlin, trafficking pro 73.2 18 0.00061 24.2 10.2 74 45-121 64-139 (142)
33 1zkr_A Major allergen I polype 72.7 7.6 0.00026 26.6 5.0 44 112-155 20-64 (153)
34 2j3t_C Trafficking protein par 71.3 20 0.0007 24.0 10.5 86 33-121 46-137 (145)
35 2ygg_A Sodium/hydrogen exchang 65.5 6.1 0.00021 23.4 2.9 23 135-157 6-28 (70)
36 1txp_A HnRNP C, heterogeneous 60.4 8.1 0.00028 18.4 2.3 18 134-155 4-21 (28)
37 3lcn_C MRNA transport factor G 58.5 14 0.00048 17.6 3.5 20 129-148 6-25 (29)
38 1y4m_A HERV-FRD_6P24.1 proviru 41.5 39 0.0013 18.8 3.5 20 129-148 7-26 (53)
39 3r8n_T 30S ribosomal protein S 37.1 40 0.0014 20.6 3.4 23 138-160 45-67 (85)
40 2ca5_A MXIH; transport protein 37.0 71 0.0024 19.5 4.7 60 82-155 12-81 (85)
41 2vqe_T 30S ribosomal protein S 35.7 38 0.0013 21.7 3.3 24 137-160 51-74 (106)
42 1mof_A Moloney murine leukemia 35.5 54 0.0018 18.3 3.5 20 129-148 9-28 (55)
43 3k4t_A Virion-associated prote 33.4 66 0.0023 19.9 3.9 26 130-155 3-31 (95)
44 2xus_A Breast cancer metastasi 33.1 25 0.00086 19.2 1.8 15 129-143 32-46 (49)
45 1bm4_A Protein (moloney murine 31.6 41 0.0014 16.6 2.3 18 74-91 11-28 (32)
46 3f4m_A Tumor necrosis factor, 29.2 1.4E+02 0.0048 20.5 5.5 41 114-157 120-160 (161)
47 2kfe_A Meucin-24; alpha-helix, 29.0 46 0.0016 15.5 2.1 18 129-146 5-22 (26)
48 1naf_A ADP-ribosylation factor 28.1 1.3E+02 0.0044 20.6 5.2 41 101-145 29-69 (158)
49 1z21_A YOP proteins translocat 26.6 96 0.0033 19.7 3.9 71 80-157 30-104 (112)
50 4ftx_A Protein SLM4; EGO compl 25.3 1.7E+02 0.0057 20.1 5.8 33 62-94 126-158 (170)
51 2ejs_A Autocrine motility fact 24.5 56 0.0019 18.4 2.3 44 108-157 11-54 (58)
52 4b1v_M Phosphatase and actin r 24.4 20 0.00069 17.4 0.4 21 139-159 8-28 (32)
53 2vqe_M 30S ribosomal protein S 23.0 82 0.0028 20.7 3.3 26 129-154 51-83 (126)
No 1
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=6e-50 Score=293.61 Aligned_cols=153 Identities=32% Similarity=0.536 Sum_probs=139.1
Q ss_pred ccceEEEEEEeCCeeEEEEeccCCCHHHHHHHHhcCCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 031403 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (160)
Q Consensus 3 ~~~I~Ya~Iar~~~iLae~~~~~~n~~~~~~~vL~~i~~~~~k~s~~~~~~~~h~l~~~~l~~~citd~~~~~~~af~fL 82 (160)
.|+|+|||||||++|||||+..+|||..+++.+|+++|+.++|++++.++|.|||++++|++|+||||++||+++||.||
T Consensus 1 ~M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL 80 (189)
T 4b93_A 1 SMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 80 (189)
T ss_dssp CCSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence 48999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCccchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 031403 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVGMLCL 157 (160)
Q Consensus 83 ~~i~~~F~~~~~~~~~~~~~~~~l~~~f~~~l~~~m~~yn~~p~~~dki~~i~~~v~evk~im~~Nid~iL~Rg~ 157 (160)
++|+++|.+.|+ ..+.++.|++++.+|++.|+++|++|+ +|.+.|++.+++++|+||++||++|||++|+||=
T Consensus 81 ~~i~~eF~~~~~-~~~~~~~~~~~~~~f~~~l~~~~~~y~-d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge 153 (189)
T 4b93_A 81 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHS-ENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGE 153 (189)
T ss_dssp HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHHHH-CC-------CCHHHHHTTTTCCEECCCCBCTTSS
T ss_pred HHHHHHHHhhcc-ccccccCCccccchhhHHHHHHHHhhh-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999994 566778889998999999999999996 6666699999999999999999999999999994
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=3e-42 Score=254.31 Aligned_cols=150 Identities=24% Similarity=0.407 Sum_probs=116.6
Q ss_pred ceEEEEEEeC--CeeEEEEeccC---CC----HHHHHHHHhcCCCC-CCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCC
Q 031403 5 SLIYAFVARG--NVVLAEYTEFS---GN----FNSIAYQCLQKLPA-SNNKFTYNCDAHTFNYLVDNGYTYCVVADESSG 74 (160)
Q Consensus 5 ~I~Ya~Iar~--~~iLae~~~~~---~n----~~~~~~~vL~~i~~-~~~k~s~~~~~~~~h~l~~~~l~~~citd~~~~ 74 (160)
||+|+||||+ ++|||++++.+ |+ |..+++.+++++++ .++|.+++.++|.|||+.++|++|+||||++||
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp 81 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP 81 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcc
Confidence 6999999999 79999998643 44 89999999999997 579999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhhCCCCCCC-CCCCccchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 031403 75 RQIPMAFLERVKDEFVSKYGGGKAAT-APANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVG 153 (160)
Q Consensus 75 ~~~af~fL~~i~~~F~~~~~~~~~~~-~~~~~l~~~f~~~l~~~m~~yn~~p~~~dki~~i~~~v~evk~im~~Nid~iL 153 (160)
+++||.||++|+++|...|+ ..|.. +.|+++ .+|++.|+++|++|| ||.+.|++.+++.+|+||++||++||+++|
T Consensus 82 ~r~af~fL~~i~~~F~~~~~-~~~~~~~~~~~~-~~f~~~l~~~~~~y~-~~~~~d~l~~~~~~l~ev~~im~~ni~~vl 158 (196)
T 2nut_C 82 KKLAFAYLEDLHSEFDEQHG-KKVPTVSRPYSF-IEFDTFIQKTKKLYI-DSRARRNLGSINTELQDVQRIMVANIEEVL 158 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TTTTTCCSTTTT-GGGHHHHHHHHTTTS-CCC-----------------CCEEEHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhcc-chhccccCCCch-HHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999995 45543 578999 599999999999995 776679999999999999999999999999
Q ss_pred hccc
Q 031403 154 MLCL 157 (160)
Q Consensus 154 ~Rg~ 157 (160)
+||=
T Consensus 159 ~Rge 162 (196)
T 2nut_C 159 QRGE 162 (196)
T ss_dssp ----
T ss_pred Hccc
Confidence 9994
No 3
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=233.22 Aligned_cols=120 Identities=32% Similarity=0.554 Sum_probs=115.1
Q ss_pred ccceEEEEEEeCCeeEEEEeccCCCHHHHHHHHhcCCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 031403 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (160)
Q Consensus 3 ~~~I~Ya~Iar~~~iLae~~~~~~n~~~~~~~vL~~i~~~~~k~s~~~~~~~~h~l~~~~l~~~citd~~~~~~~af~fL 82 (160)
-|+|+|||||||++|||||+..+|||..+++.+|+++|+.++|++++.++|+|||++++|++|+||||++||+++||.||
T Consensus 53 ~M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL 132 (173)
T 4afi_A 53 AMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 132 (173)
T ss_dssp CCCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred cccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence 37799999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCccchhhHHHHHHHHHHhcC
Q 031403 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVD 123 (160)
Q Consensus 83 ~~i~~~F~~~~~~~~~~~~~~~~l~~~f~~~l~~~m~~yn~ 123 (160)
++|+++|.+.|+ .+|.+++||+++.+|++.|+++|++||+
T Consensus 133 edI~~eF~~~yg-~~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 133 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-hhhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 999999999994 6788999999999999999999999984
No 4
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=100.00 E-value=2.4e-34 Score=206.64 Aligned_cols=121 Identities=31% Similarity=0.550 Sum_probs=108.8
Q ss_pred ccceEEEEEEeCCeeEEEEeccCCCHHHHHHHHhcCCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 031403 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (160)
Q Consensus 3 ~~~I~Ya~Iar~~~iLae~~~~~~n~~~~~~~vL~~i~~~~~k~s~~~~~~~~h~l~~~~l~~~citd~~~~~~~af~fL 82 (160)
.|.|+|+||+||++|||||++.++||..+++.+++++++.++|.+++.++|.|||+.+||++|+||||++||+++||.||
T Consensus 43 ~M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 43 GMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp SSCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 48899999999999999999989999999999999999977999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCccchhhHHHHHHHHHHhcCC
Q 031403 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDH 124 (160)
Q Consensus 83 ~~i~~~F~~~~~~~~~~~~~~~~l~~~f~~~l~~~m~~yn~~ 124 (160)
++|+++|.+.|+ ..|..+.|++++.+|++.|++.|++||++
T Consensus 123 edI~~eF~~~y~-~~~~~a~pysf~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 123 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp HHHHHHHHHHHT-TGGGTCCTTTTHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHhh-hhhhccCCcchhHHHHHHHHHHHHHhcCc
Confidence 999999999995 57777789999789999999999999754
No 5
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=2.6e-34 Score=211.63 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=123.7
Q ss_pred ccceEEEEEEeC----CeeEEEEeccC----------CCHHHH-HHHHhcCCCCCCCeeEEEeCCeEEE-EEEeCCEEEE
Q 031403 3 QKSLIYAFVARG----NVVLAEYTEFS----------GNFNSI-AYQCLQKLPASNNKFTYNCDAHTFN-YLVDNGYTYC 66 (160)
Q Consensus 3 ~~~I~Ya~Iar~----~~iLae~~~~~----------~n~~~~-~~~vL~~i~~~~~k~s~~~~~~~~h-~l~~~~l~~~ 66 (160)
+|.|++.+|.+. .++|+...+.+ ++|... ++.+++++++ ++|.+++.++|.|| |+.++|++|+
T Consensus 1 ~mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~-~~r~s~~~~~y~fH~y~~~~gl~yl 79 (199)
T 3kyq_A 1 LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK-GSRASVKEQEYLCHVYVRSDSLAGV 79 (199)
T ss_dssp CCCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT-TEEEEEECSSEEEEEEECTTSEEEE
T ss_pred CceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC-CCeEEEEeCCEEEEEEEecCCEEEE
Confidence 477999999983 25777554422 456664 4689999988 59999999999999 8999999999
Q ss_pred EEecCCCCcccHHHHHHHHHHHHHhhhCCCCCCCCCCCccchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Q 031403 67 VVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMM 146 (160)
Q Consensus 67 citd~~~~~~~af~fL~~i~~~F~~~~~~~~~~~~~~~~l~~~f~~~l~~~m~~yn~~p~~~dki~~i~~~v~evk~im~ 146 (160)
||||++||+++||.||++|+++|.+.|+...|....+... .| +.|++.|++| +||.+.|++.+++++|+||++||+
T Consensus 80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~--~f-~~l~~~m~~Y-~dp~~~d~l~~~q~el~evk~iM~ 155 (199)
T 3kyq_A 80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATI--HY-TALDGHLSRY-QNPREADPMSKVQAELDETKIILH 155 (199)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTC--CC-CTHHHHHHHT-TSGGGCCCCHHHHHHHHTCCCEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhccchhhhccccccc--cc-HHHHHHHHHh-CCchhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999996555643322221 35 6788899999 488877999999999999999999
Q ss_pred HhHHHHHhcc
Q 031403 147 ENIEKVGMLC 156 (160)
Q Consensus 147 ~Nid~iL~Rg 156 (160)
+|||++|+||
T Consensus 156 ~NI~~vl~Rg 165 (199)
T 3kyq_A 156 NTMESLLERG 165 (199)
T ss_dssp SSGGGTSCTT
T ss_pred HHHHHHHHcc
Confidence 9999999999
No 6
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.95 E-value=5e-28 Score=169.99 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=98.8
Q ss_pred cceEEEEEEeC----CeeEEEEeccC----------CCH-HHHHHHHhcCCCCCCCeeEEEeCCeEEEEE-EeCCEEEEE
Q 031403 4 KSLIYAFVARG----NVVLAEYTEFS----------GNF-NSIAYQCLQKLPASNNKFTYNCDAHTFNYL-VDNGYTYCV 67 (160)
Q Consensus 4 ~~I~Ya~Iar~----~~iLae~~~~~----------~n~-~~~~~~vL~~i~~~~~k~s~~~~~~~~h~l-~~~~l~~~c 67 (160)
|.|+|++|+|+ .++|+++++.+ ++| ..+++.+++|++++ +|++++.++|+|||+ .++|++|+|
T Consensus 5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~-~R~sv~~~~y~fH~~~~~~gl~~l~ 83 (144)
T 3bw6_A 5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG-QRQSIEEGNYIGHVYARSEGICGVL 83 (144)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTT-EEEEEEETTEEEEEEECTTSEEEEE
T ss_pred EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCC-ceEEEEeCCEEEEEEEecCCEEEEE
Confidence 55777779998 58999998766 555 77899999999994 999999999999999 789999999
Q ss_pred EecCCCCcccHHHHHHHHHHHHHhhhCCCCCCC-CCCCccchhhHHHHHHHHHHhcCChHHHHH
Q 031403 68 VADESSGRQIPMAFLERVKDEFVSKYGGGKAAT-APANGLNKEFGPKLKELMQYCVDHPEEISK 130 (160)
Q Consensus 68 itd~~~~~~~af~fL~~i~~~F~~~~~~~~~~~-~~~~~l~~~f~~~l~~~m~~yn~~p~~~dk 130 (160)
|||++||+|+||.||++|+++|.+.|+...|.+ ..+++ +..| +.|++.|++| +||.+.|+
T Consensus 84 i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~-~~~f-~~l~~~i~kY-qdp~~aD~ 144 (144)
T 3bw6_A 84 ITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETND-ALKM-KQLDTYISKY-QDPSQADA 144 (144)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCG-GGCC-THHHHHHHHT-SCC-----
T ss_pred EECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccC-Ccch-HHHHHHHHHh-CchhhcCC
Confidence 999999999999999999999999996443765 33111 2344 7888999889 68877664
No 7
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.00 E-value=1.9e-10 Score=69.49 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 031403 124 HPEEISKLAKVKAQVSEVKGVMMENIEKVGMLCL 157 (160)
Q Consensus 124 ~p~~~dki~~i~~~v~evk~im~~Nid~iL~Rg~ 157 (160)
+|.+.|++.+++.+|+||+.||++||+++|+||=
T Consensus 4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~Rge 37 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGE 37 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3545699999999999999999999999999993
No 8
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=98.94 E-value=6e-10 Score=66.93 Aligned_cols=30 Identities=33% Similarity=0.307 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 031403 128 ISKLAKVKAQVSEVKGVMMENIEKVGMLCL 157 (160)
Q Consensus 128 ~dki~~i~~~v~evk~im~~Nid~iL~Rg~ 157 (160)
.|++.+++.+|+||+.||++||+++|+||=
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGe 32 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQ 32 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 399999999999999999999999999993
No 9
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.88 E-value=1.5e-09 Score=64.68 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 031403 129 SKLAKVKAQVSEVKGVMMENIEKVGMLCL 157 (160)
Q Consensus 129 dki~~i~~~v~evk~im~~Nid~iL~Rg~ 157 (160)
|++.+++.+|+||+.||++||+++|+||=
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~Rge 30 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGE 30 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 89999999999999999999999999993
No 10
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=98.87 E-value=2.5e-10 Score=70.77 Aligned_cols=34 Identities=38% Similarity=0.278 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 031403 124 HPEEISKLAKVKAQVSEVKGVMMENIEKVGMLCL 157 (160)
Q Consensus 124 ~p~~~dki~~i~~~v~evk~im~~Nid~iL~Rg~ 157 (160)
+|.+.|++.+++.+|+||++||++||+++|+||=
T Consensus 3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~Rge 36 (74)
T 2nps_A 3 MGPRNDKIKHVQNQVDEVIDVMQENITKVIERGE 36 (74)
T ss_dssp ---CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555699999999999999999999999999993
No 11
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=98.84 E-value=1.1e-09 Score=68.82 Aligned_cols=33 Identities=30% Similarity=0.301 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 031403 125 PEEISKLAKVKAQVSEVKGVMMENIEKVGMLCL 157 (160)
Q Consensus 125 p~~~dki~~i~~~v~evk~im~~Nid~iL~Rg~ 157 (160)
|.+.|+|.+++.+|+||+.||++||+++|+||=
T Consensus 11 ~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGe 43 (80)
T 1l4a_A 11 VQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDS 43 (80)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334599999999999999999999999999993
No 12
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=98.77 E-value=4.8e-09 Score=68.06 Aligned_cols=30 Identities=33% Similarity=0.307 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 031403 128 ISKLAKVKAQVSEVKGVMMENIEKVGMLCL 157 (160)
Q Consensus 128 ~dki~~i~~~v~evk~im~~Nid~iL~Rg~ 157 (160)
.|+|.+++.+|+||++||++||+++|+||=
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI~kvLeRGE 58 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQ 58 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 499999999999999999999999999993
No 13
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=98.71 E-value=9.6e-09 Score=66.05 Aligned_cols=29 Identities=34% Similarity=0.397 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcc
Q 031403 128 ISKLAKVKAQVSEVKGVMMENIEKVGMLC 156 (160)
Q Consensus 128 ~dki~~i~~~v~evk~im~~Nid~iL~Rg 156 (160)
.|++.+++++++||++||++|||++|+||
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~Rg 32 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERD 32 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 39999999999999999999999999999
No 14
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.63 E-value=7e-12 Score=67.57 Aligned_cols=29 Identities=34% Similarity=0.351 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 031403 129 SKLAKVKAQVSEVKGVMMENIEKVGMLCL 157 (160)
Q Consensus 129 dki~~i~~~v~evk~im~~Nid~iL~Rg~ 157 (160)
|++.++|++|+||++||++||+++|+||-
T Consensus 9 d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 9 RRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 89999999999999999999999999993
No 15
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=98.60 E-value=1.2e-08 Score=68.74 Aligned_cols=30 Identities=33% Similarity=0.307 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 031403 128 ISKLAKVKAQVSEVKGVMMENIEKVGMLCL 157 (160)
Q Consensus 128 ~dki~~i~~~v~evk~im~~Nid~iL~Rg~ 157 (160)
.|++.+++++|+||++||++|||++|+||=
T Consensus 32 ~d~l~~vq~evdeVk~IM~~NIdkvLeRGE 61 (119)
T 2kog_A 32 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQ 61 (119)
T ss_dssp CSHHHHSSHHHHHHHHHHHHHHHHHHCCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 499999999999999999999999999994
No 16
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=98.42 E-value=1.4e-07 Score=56.31 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 031403 129 SKLAKVKAQVSEVKGVMMENIEKVGMLCL 157 (160)
Q Consensus 129 dki~~i~~~v~evk~im~~Nid~iL~Rg~ 157 (160)
.++..++.++++|++||.+||++++|||=
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGe 32 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQ 32 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999993
No 17
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.38 E-value=9e-08 Score=74.51 Aligned_cols=52 Identities=15% Similarity=0.326 Sum_probs=34.0
Q ss_pred cchhhHHHHHHHHHHhcC----------Ch----HHHHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 031403 106 LNKEFGPKLKELMQYCVD----------HP----EEISKLAKVKAQVSEVKGVMMENIEKVGMLCL 157 (160)
Q Consensus 106 l~~~f~~~l~~~m~~yn~----------~p----~~~dki~~i~~~v~evk~im~~Nid~iL~Rg~ 157 (160)
+...|.....++.++|.. -| ...|.+.++|+||+||++||++|||++|+||=
T Consensus 243 iykrf~~Q~e~L~~Fy~~ck~l~l~~~~iP~L~~~p~d~l~~lq~~i~ev~~im~~ni~~vl~rge 308 (310)
T 3zym_A 243 IYKKFLTRMTRISEFLKVAEQVGIDRGDISGSGSGHMDRVRNLQSEVEGVKNIMTQNVERILARGE 308 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC------------------CHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhHHHHHhccC
Confidence 345566666666666641 01 12489999999999999999999999999993
No 18
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=97.91 E-value=1.9e-05 Score=56.71 Aligned_cols=87 Identities=18% Similarity=0.278 Sum_probs=61.6
Q ss_pred eEEEEEEeCCeeEEEEeccCC----CHHHHHHHHhcCCCCCCCeeEEEeCCeEEEEEEeC--CEEEEEEecCCCCcccHH
Q 031403 6 LIYAFVARGNVVLAEYTEFSG----NFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQIPM 79 (160)
Q Consensus 6 I~Ya~Iar~~~iLae~~~~~~----n~~~~~~~vL~~i~~~~~k~s~~~~~~~~h~l~~~--~l~~~citd~~~~~~~af 79 (160)
=+.+.+.+|++||+.|+.... ....+++.||-.=.. ...+|.+++|...+...| +++|++|=..-.+-.-.=
T Consensus 12 D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~--~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD 89 (185)
T 2fh5_A 12 DFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERG--GNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVD 89 (185)
T ss_dssp SEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHH
T ss_pred eEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhcccc--CCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHH
Confidence 367888999999999954332 366677776544332 234688899999998765 799999976665555556
Q ss_pred HHHHHHHHHHHhhhC
Q 031403 80 AFLERVKDEFVSKYG 94 (160)
Q Consensus 80 ~fL~~i~~~F~~~~~ 94 (160)
.||+.++..|...|.
T Consensus 90 ~LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 90 KLIDDVHRLFRDKYR 104 (185)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999999984
No 19
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.011 Score=39.91 Aligned_cols=87 Identities=18% Similarity=0.276 Sum_probs=59.9
Q ss_pred CCccceEEEEEEeCCeeEEE-E-ec-c--------CC--C-----HHH-HHHHHhcCCCCC-C---CeeEEE-eCCeEEE
Q 031403 1 MSQKSLIYAFVARGNVVLAE-Y-TE-F--------SG--N-----FNS-IAYQCLQKLPAS-N---NKFTYN-CDAHTFN 56 (160)
Q Consensus 1 ~~~~~I~Ya~Iar~~~iLae-~-~~-~--------~~--n-----~~~-~~~~vL~~i~~~-~---~k~s~~-~~~~~~h 56 (160)
|-+-++-|.=|..+...++. | .. . ++ + |.. +-..|+.++-+- + +|+|.. .+||-++
T Consensus 1 MK~fnvSYvEvi~~g~~~sscy~~~~~~s~YGs~~~~~~~~tp~~Fh~Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCY 80 (149)
T 2fz0_A 1 MKRFNVSYVEVIKNGETISSCFQPFQKNENYGTITSANEQITPVIFHNLIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCF 80 (149)
T ss_dssp CCCCCCSEEEEEESSSCCCEEECCCSSSSSCSCCSSTTSSCCHHHHHHHHHHTTGGGCCCCSSCSSEECCSCCSSSEEEE
T ss_pred CCccceEEEEEEeCCeeEEEEeeccCCCcccccccccccccCHHHHHHHHHheecceEEecCCCeEEEEeeeccccceee
Confidence 44456778877776654443 4 11 0 11 1 444 345577887654 3 355555 5899998
Q ss_pred EEE---eCCEEEEEEecCCCCcccHHHHHHHHHH
Q 031403 57 YLV---DNGYTYCVVADESSGRQIPMAFLERVKD 87 (160)
Q Consensus 57 ~l~---~~~l~~~citd~~~~~~~af~fL~~i~~ 87 (160)
|.. +++.+++|+|..+.|+-.|...|.+++.
T Consensus 81 YtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 81 YSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp ECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred eeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 876 3578999999999999999999999977
No 20
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.47 E-value=0.98 Score=36.15 Aligned_cols=90 Identities=12% Similarity=0.149 Sum_probs=59.9
Q ss_pred cceEEEEEEe--CCeeEEEE-ec-cCCC-HHHHHHHHhcCCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcccH
Q 031403 4 KSLIYAFVAR--GNVVLAEY-TE-FSGN-FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIP 78 (160)
Q Consensus 4 ~~I~Ya~Iar--~~~iLae~-~~-~~~n-~~~~~~~vL~~i~~~~~k~s~~~~~~~~h~l~~~~l~~~citd~~~~~~~a 78 (160)
|||...+|.. |..+|+-+ .. ...+ .+..-+.++.+......--.+..+++.|.|...+++-|+|+++.+...-..
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 80 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV 80 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 6777777765 34566643 32 2222 333334444432211122355678999888888999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 031403 79 MAFLERVKDEFVSKY 93 (160)
Q Consensus 79 f~fL~~i~~~F~~~~ 93 (160)
+.||..+.+-+..-+
T Consensus 81 le~L~~~v~~l~~yf 95 (423)
T 1w63_M 81 FSFLYKVVQVFSEYF 95 (423)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988887766
No 21
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=90.76 E-value=2.9 Score=28.73 Aligned_cols=49 Identities=10% Similarity=0.205 Sum_probs=42.7
Q ss_pred eEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhC
Q 031403 46 FTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (160)
Q Consensus 46 ~s~~~~~~~~h~l~~~~l~~~citd~~~~~~~af~fL~~i~~~F~~~~~ 94 (160)
-.+..+++.|-|...+++-|+|+++.+...-..+.||..+-+-+..-++
T Consensus 48 ~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 48 SFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG 96 (158)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred CeEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 3556788888888889999999999999999999999999998888773
No 22
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=90.13 E-value=5.4 Score=31.90 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=42.9
Q ss_pred eEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhC
Q 031403 46 FTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (160)
Q Consensus 46 ~s~~~~~~~~h~l~~~~l~~~citd~~~~~~~af~fL~~i~~~F~~~~~ 94 (160)
-.+..+++.|-|...+++-|+|+++.+...-..+.||..+.+-+..-++
T Consensus 46 ~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 46 PVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3566789988888889999999999999999999999999988888773
No 23
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=89.82 E-value=3.5 Score=28.25 Aligned_cols=88 Identities=11% Similarity=0.154 Sum_probs=61.3
Q ss_pred ceEEEEEEe--CCeeEEEEeccC-CCH---HHHHHHHhcCCCCCCCeeEEEeCCeEEEEEEeCCEEEEEEecCCCCcccH
Q 031403 5 SLIYAFVAR--GNVVLAEYTEFS-GNF---NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIP 78 (160)
Q Consensus 5 ~I~Ya~Iar--~~~iLae~~~~~-~n~---~~~~~~vL~~i~~~~~k~s~~~~~~~~h~l~~~~l~~~citd~~~~~~~a 78 (160)
||...+|.. |.++|+-|-... .+. ....+.+..++...+ .-.+..+++.+.|..-+++.|+++++.+...-..
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~-~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~i 90 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTD-SEIALLEGLTVVYKSSIDLYFYVIGSSYENELML 90 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCC-CCEEEETTEEEEEEECSSCEEEEEEETTSCHHHH
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-CCEEEECCEEEEEEEECCEEEEEEEcCCCChHHH
Confidence 566666664 568888664321 221 112222333332222 2456678999999888999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 031403 79 MAFLERVKDEFVSKY 93 (160)
Q Consensus 79 f~fL~~i~~~F~~~~ 93 (160)
+.||..+-+.+..-+
T Consensus 91 le~L~~~ve~l~~yf 105 (153)
T 3tjz_C 91 MTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988877
No 24
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=86.03 E-value=5.9 Score=26.50 Aligned_cols=48 Identities=8% Similarity=0.154 Sum_probs=42.3
Q ss_pred eEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhh
Q 031403 46 FTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKY 93 (160)
Q Consensus 46 ~s~~~~~~~~h~l~~~~l~~~citd~~~~~~~af~fL~~i~~~F~~~~ 93 (160)
-.+..+++.|-|...+++-|+|+++.+.+.-..+.||..+.+-+..-+
T Consensus 48 ~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf 95 (142)
T 2vgl_S 48 NFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYF 95 (142)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888999999999999999999999999999888877
No 25
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=85.78 E-value=1.4 Score=26.71 Aligned_cols=46 Identities=13% Similarity=0.024 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 031403 112 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVGMLCL 157 (160)
Q Consensus 112 ~~l~~~m~~yn~~p~~~dki~~i~~~v~evk~im~~Nid~iL~Rg~ 157 (160)
+..+..++.||.+|...+...++++-++....-=..||.++|++=+
T Consensus 21 ~~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~kI~ 66 (77)
T 1ccd_A 21 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEKIL 66 (77)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3466777899988888899999999999888888889988887644
No 26
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=84.81 E-value=1.2 Score=26.49 Aligned_cols=46 Identities=11% Similarity=0.024 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 031403 112 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVGMLCL 157 (160)
Q Consensus 112 ~~l~~~m~~yn~~p~~~dki~~i~~~v~evk~im~~Nid~iL~Rg~ 157 (160)
+..+..++.||.+|...+...++++-++....-=..||.++|++-+
T Consensus 19 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~kI~ 64 (70)
T 1utg_A 19 SSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEKIV 64 (70)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3456677899888888899999999999888888888888887644
No 27
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=83.44 E-value=8 Score=26.59 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=54.1
Q ss_pred HHHhcCCCCC---CCeeEEEeCCeEEEEEE-eCCEEEEEEecCCCCcccHHHHHHHHHH-HHHhhhCCCC-----CCCC-
Q 031403 33 YQCLQKLPAS---NNKFTYNCDAHTFNYLV-DNGYTYCVVADESSGRQIPMAFLERVKD-EFVSKYGGGK-----AATA- 101 (160)
Q Consensus 33 ~~vL~~i~~~---~~k~s~~~~~~~~h~l~-~~~l~~~citd~~~~~~~af~fL~~i~~-~F~~~~~~~~-----~~~~- 101 (160)
+.+.+++.|. +.-.+++-+.|..|+.. -.|+-|+++||...+ -.-.+|.+|.. -|.+-...+- +...
T Consensus 52 ~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~ 129 (159)
T 3cue_C 52 RSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQ--SYTQVLQYIYSHIYVKYVSNNLLSPYDFAENE 129 (159)
T ss_dssp HHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSS--CTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSC
T ss_pred HHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcc--hHHHHHHHHHHHHHHHHHHhCCCccccccccc
Confidence 4455666654 34567777888888764 579999999997744 45578899997 6666221221 1111
Q ss_pred --------CCCccchhhHHHHHHHHHHh
Q 031403 102 --------PANGLNKEFGPKLKELMQYC 121 (160)
Q Consensus 102 --------~~~~l~~~f~~~l~~~m~~y 121 (160)
.|-. ...|+..++++++.+
T Consensus 130 ~~~~~~~~~pI~-s~~Fd~~l~~~~~~~ 156 (159)
T 3cue_C 130 NEMRGQGTRKIT-NRNFISVLESFLAPM 156 (159)
T ss_dssp TTTTTSCCCCCC-CHHHHHHHHHHTSCC
T ss_pred cccccccCcCcc-cHHHHHHHHHHHHhc
Confidence 1222 256888888777654
No 28
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=76.41 E-value=20 Score=26.13 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=49.0
Q ss_pred CeeEEEeCCeEEEEE-EeCCEEEEEEecCCCCc----------------------ccHHHHHHHHHHHHHhhhCCCCCCC
Q 031403 44 NKFTYNCDAHTFNYL-VDNGYTYCVVADESSGR----------------------QIPMAFLERVKDEFVSKYGGGKAAT 100 (160)
Q Consensus 44 ~k~s~~~~~~~~h~l-~~~~l~~~citd~~~~~----------------------~~af~fL~~i~~~F~~~~~~~~~~~ 100 (160)
.-..+..+.|..|+. .-.|+=|++++|...+. ...-.||.+|..-|.+....+-+-.
T Consensus 118 g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~ 197 (219)
T 3cue_A 118 GLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYS 197 (219)
T ss_dssp SCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred ceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 345666788887754 56899999999987643 4467999999988887432222111
Q ss_pred -CCCCccchhhHHHHHHHHHHh
Q 031403 101 -APANGLNKEFGPKLKELMQYC 121 (160)
Q Consensus 101 -~~~~~l~~~f~~~l~~~m~~y 121 (160)
..|-. ...|+..++.+++.+
T Consensus 198 ~~~pI~-S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 198 MEMPIR-SNLFDEKVKKMVENL 218 (219)
T ss_dssp TTSCCC-CHHHHHHHHHHHHHH
T ss_pred CCCccc-cHHHHHHHHHHHHhc
Confidence 11221 155777777777654
No 29
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=75.27 E-value=21 Score=25.95 Aligned_cols=87 Identities=11% Similarity=0.097 Sum_probs=58.9
Q ss_pred HHHhcCCCCC---CCeeEEEeCCeEEEEE-EeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhCCCCCCC-CCCCccc
Q 031403 33 YQCLQKLPAS---NNKFTYNCDAHTFNYL-VDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAAT-APANGLN 107 (160)
Q Consensus 33 ~~vL~~i~~~---~~k~s~~~~~~~~h~l-~~~~l~~~citd~~~~~~~af~fL~~i~~~F~~~~~~~~~~~-~~~~~l~ 107 (160)
..+.+++.|. ..-.+++.+.|..|+. .-.|+-|++++|.. ..-.-.||.+|.+-|.+....+-+-. ..|-. .
T Consensus 119 d~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~-s 195 (219)
T 2j3t_D 119 FAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIR-C 195 (219)
T ss_dssp HHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCC-C
T ss_pred HHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHhccCCCCCCCCccc-h
Confidence 3344566653 2346777889988865 45799999999986 55677999999988877533332221 12222 2
Q ss_pred hhhHHHHHHHHHHhc
Q 031403 108 KEFGPKLKELMQYCV 122 (160)
Q Consensus 108 ~~f~~~l~~~m~~yn 122 (160)
..|+..++++++.++
T Consensus 196 ~~Fd~~v~~l~~~~~ 210 (219)
T 2j3t_D 196 ELFDQNLKLALEVAE 210 (219)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 669999999998775
No 30
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=74.15 E-value=5.9 Score=25.34 Aligned_cols=41 Identities=15% Similarity=0.467 Sum_probs=31.6
Q ss_pred eEEEEEEeCCeeEEEEeccCCCHHHHHHHHhcCCCCCCCeeEEEeCCeEEEEE
Q 031403 6 LIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYL 58 (160)
Q Consensus 6 I~Ya~Iar~~~iLae~~~~~~n~~~~~~~vL~~i~~~~~k~s~~~~~~~~h~l 58 (160)
|+|..|++++ +|++++..| +++.-+.+.-++++++..||..
T Consensus 86 iiyltiskdn--icqfsdekg----------eqidinsqfnsfeydgisfhlk 126 (146)
T 4a4y_A 86 IIYLTISKDN--ICQFSDEKG----------EQIDINSQFNSFEYDGISFHLK 126 (146)
T ss_dssp EEEEEECTTC--CEEEECTTS----------CEECCCSSSSEEEETTEEEEEE
T ss_pred EEEEEEecCc--ceecccccC----------cEeeccccccceeecceEeehh
Confidence 8898888875 688888665 3455445667999999999986
No 31
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=73.51 E-value=2.2 Score=26.95 Aligned_cols=45 Identities=13% Similarity=0.022 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 031403 113 KLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVGMLCL 157 (160)
Q Consensus 113 ~l~~~m~~yn~~p~~~dki~~i~~~v~evk~im~~Nid~iL~Rg~ 157 (160)
..+.-++.||.+|...+...++++-+++...-=..||.++|++-+
T Consensus 41 ~Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~I~ 85 (96)
T 1utr_A 41 NYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEKIL 85 (96)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 345566799888887899999999999888888888888887643
No 32
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=73.24 E-value=18 Score=24.18 Aligned_cols=74 Identities=11% Similarity=0.041 Sum_probs=50.4
Q ss_pred eeEEEeCCeEEEEE-EeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhhCCCCCCC-CCCCccchhhHHHHHHHHHHh
Q 031403 45 KFTYNCDAHTFNYL-VDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAAT-APANGLNKEFGPKLKELMQYC 121 (160)
Q Consensus 45 k~s~~~~~~~~h~l-~~~~l~~~citd~~~~~~~af~fL~~i~~~F~~~~~~~~~~~-~~~~~l~~~f~~~l~~~m~~y 121 (160)
+.+...++|..|+. .-.|+=|+.++|.. ...-.-.||.+|..-|.+... +-.-. ..|-. ...|+..++++++.|
T Consensus 64 ~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~-NPfy~~~~pI~-s~~Fd~~v~~~~~~~ 139 (142)
T 2j3w_A 64 KTVDKFNEWFVSAFVTAGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIR-SSAFDRKVQFLGKKH 139 (142)
T ss_dssp EEEEEETTEEEEEEECTTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHHHH-STTCCTTCCCC-CHHHHHHHHHHHHHH
T ss_pred EeeecccceEEEEEEcCCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhc-CCCCCCCCcee-cHHHHHHHHHHHHHh
Confidence 56666788887754 56899999999973 244566899999988887543 32211 11222 256888898888876
No 33
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=72.74 E-value=7.6 Score=26.60 Aligned_cols=44 Identities=14% Similarity=-0.013 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHH-HHHHHHHHhHHHHHhc
Q 031403 112 PKLKELMQYCVDHPEEISKLAKVKAQVS-EVKGVMMENIEKVGML 155 (160)
Q Consensus 112 ~~l~~~m~~yn~~p~~~dki~~i~~~v~-evk~im~~Nid~iL~R 155 (160)
+..+..++.||.+|.......++++-++ ....-=..||.++|++
T Consensus 20 eeYk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLek 64 (153)
T 1zkr_A 20 DEYVEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLDK 64 (153)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 3456677899888888899999999999 6555566666666665
No 34
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=71.34 E-value=20 Score=24.04 Aligned_cols=86 Identities=10% Similarity=0.154 Sum_probs=55.9
Q ss_pred HHHhcCCCCC---CCeeEEEeCCeEEEEE-EeCCEEEEEEecCCCCcccHHHHHHHHH-HHHHhhhCCCCCCC-CCCCcc
Q 031403 33 YQCLQKLPAS---NNKFTYNCDAHTFNYL-VDNGYTYCVVADESSGRQIPMAFLERVK-DEFVSKYGGGKAAT-APANGL 106 (160)
Q Consensus 33 ~~vL~~i~~~---~~k~s~~~~~~~~h~l-~~~~l~~~citd~~~~~~~af~fL~~i~-~~F~~~~~~~~~~~-~~~~~l 106 (160)
..+.+++.|. ....+++.++|..|+. .-.|+=|+.+||+..+ -.-.||.+|. +-|.+....+-.-. ..|-.
T Consensus 46 ~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~- 122 (145)
T 2j3t_C 46 RSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVG--PIRDVLHHIYSALYVEFVVKNPLCPLGQTVQ- 122 (145)
T ss_dssp HHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEEEECTTCC--CCHHHHHHHHHTTHHHHTTTCTTSCTTSCCC-
T ss_pred HHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEEEecCCcc--hHHHHHHHHHHHHHHHHHhcCCCCCCCCcee-
Confidence 3344555553 3467778889988865 4589999999998744 4668999999 67776432232211 12222
Q ss_pred chhhHHHHHHHHHHh
Q 031403 107 NKEFGPKLKELMQYC 121 (160)
Q Consensus 107 ~~~f~~~l~~~m~~y 121 (160)
...|+..++++++.+
T Consensus 123 s~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 123 SELFRSRLDSYVRSL 137 (145)
T ss_dssp CHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHhC
Confidence 256888888888654
No 35
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=65.50 E-value=6.1 Score=23.38 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhccc
Q 031403 135 KAQVSEVKGVMMENIEKVGMLCL 157 (160)
Q Consensus 135 ~~~v~evk~im~~Nid~iL~Rg~ 157 (160)
..+++++++|+..|+.++=+|.+
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~~ 28 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRLR 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 35789999999999999988754
No 36
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=60.43 E-value=8.1 Score=18.41 Aligned_cols=18 Identities=11% Similarity=0.366 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHhc
Q 031403 134 VKAQVSEVKGVMMENIEKVGML 155 (160)
Q Consensus 134 i~~~v~evk~im~~Nid~iL~R 155 (160)
++.++.++| ++||.+|+|
T Consensus 4 IkkELtQIK----~kvDsLLe~ 21 (28)
T 1txp_A 4 IKKELTQIK----QKVDSLLEN 21 (28)
T ss_dssp HHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHH
Confidence 444444443 345555543
No 37
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=58.46 E-value=14 Score=17.58 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 031403 129 SKLAKVKAQVSEVKGVMMEN 148 (160)
Q Consensus 129 dki~~i~~~v~evk~im~~N 148 (160)
+++.-++..|+|-++|..++
T Consensus 6 sKm~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 6 SKMKLLKKKIEEQREILQKT 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999998876
No 38
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=41.52 E-value=39 Score=18.77 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 031403 129 SKLAKVKAQVSEVKGVMMEN 148 (160)
Q Consensus 129 dki~~i~~~v~evk~im~~N 148 (160)
+.+..++++++-+.++..+|
T Consensus 7 ~sl~~l~~ql~sla~vvlQN 26 (53)
T 1y4m_A 7 KALTTMQEQIDSLAAVVLQN 26 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999998
No 39
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=37.14 E-value=40 Score=20.63 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhHHHHHhccccCC
Q 031403 138 VSEVKGVMMENIEKVGMLCLFHK 160 (160)
Q Consensus 138 v~evk~im~~Nid~iL~Rg~~~~ 160 (160)
..+.-..+..-||+.-..|++||
T Consensus 45 A~~~l~~a~~~iDkaa~KGviHk 67 (85)
T 3r8n_T 45 AQKAFNEMQPIVDRQAAKGLIHK 67 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTT
T ss_pred HHHHHHHHHHHHHHHHHCCCccH
Confidence 44445566778999999999997
No 40
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=37.00 E-value=71 Score=19.48 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhCCCCCCCCCCCccchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHH----------HHHHHHHhHHH
Q 031403 82 LERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSE----------VKGVMMENIEK 151 (160)
Q Consensus 82 L~~i~~~F~~~~~~~~~~~~~~~~l~~~f~~~l~~~m~~yn~~p~~~dki~~i~~~v~e----------vk~im~~Nid~ 151 (160)
|++|.+.|...- ..++.+....++.+-..- +|| ..+.+.|..+.| +...|.+.+..
T Consensus 12 Ld~v~~~f~~ga----------~~~~~~v~~Ai~~L~~~P-snP---a~LAeyQ~kl~eysl~rNaqSttiKa~KDi~~s 77 (85)
T 2ca5_A 12 LSSLSETFDDGT----------QTLQGELTLALDKLAKNP-SNP---QLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAA 77 (85)
T ss_dssp --------CCHH----------HHHHHHHHHHHHHHHHCT-TCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHHcCC-CCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777764432 133455666666665443 455 567777777776 45566677777
Q ss_pred HHhc
Q 031403 152 VGML 155 (160)
Q Consensus 152 iL~R 155 (160)
|||.
T Consensus 78 I~~~ 81 (85)
T 2ca5_A 78 ILEH 81 (85)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 7764
No 41
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=35.73 E-value=38 Score=21.67 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhHHHHHhccccCC
Q 031403 137 QVSEVKGVMMENIEKVGMLCLFHK 160 (160)
Q Consensus 137 ~v~evk~im~~Nid~iL~Rg~~~~ 160 (160)
+..+.-.....-||+.-.+|++||
T Consensus 51 ~A~~~l~~a~s~iDkaa~KGviHK 74 (106)
T 2vqe_T 51 EALKIMRKAESLIDKAAKGSTLHK 74 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSSCT
T ss_pred HHHHHHHHHHHHHHHHHHcCCccH
Confidence 344555667788999999999997
No 42
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=35.50 E-value=54 Score=18.32 Aligned_cols=20 Identities=10% Similarity=0.428 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 031403 129 SKLAKVKAQVSEVKGVMMEN 148 (160)
Q Consensus 129 dki~~i~~~v~evk~im~~N 148 (160)
+.+..++++++-+.++.-+|
T Consensus 9 ~si~~l~~ql~sla~vvlQN 28 (55)
T 1mof_A 9 KSISNLEKSLTSLSEVVLQN 28 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999998
No 43
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=33.36 E-value=66 Score=19.90 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHH---HHHHhHHHHHhc
Q 031403 130 KLAKVKAQVSEVKG---VMMENIEKVGML 155 (160)
Q Consensus 130 ki~~i~~~v~evk~---im~~Nid~iL~R 155 (160)
.+++++.+|+++.. -|..-|+.+|+|
T Consensus 3 nl~~i~~Ei~~~~~~~~~~~~~i~aiL~~ 31 (95)
T 3k4t_A 3 NLNQIQKEVSEILSDQKSMKADIKAILEL 31 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666633 345556666654
No 44
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=33.14 E-value=25 Score=19.22 Aligned_cols=15 Identities=20% Similarity=0.505 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHH
Q 031403 129 SKLAKVKAQVSEVKG 143 (160)
Q Consensus 129 dki~~i~~~v~evk~ 143 (160)
+++++++.++++|+.
T Consensus 32 ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 32 ERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 799999999999864
No 45
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=31.57 E-value=41 Score=16.57 Aligned_cols=18 Identities=39% Similarity=0.687 Sum_probs=14.6
Q ss_pred CcccHHHHHHHHHHHHHh
Q 031403 74 GRQIPMAFLERVKDEFVS 91 (160)
Q Consensus 74 ~~~~af~fL~~i~~~F~~ 91 (160)
+..-+..||+.++..|+.
T Consensus 11 ~~EsPs~FlerL~eayR~ 28 (32)
T 1bm4_A 11 PNESPSAFLERLKEAYRR 28 (32)
T ss_dssp GGGHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHh
Confidence 345688999999999875
No 46
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=29.17 E-value=1.4e+02 Score=20.51 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=25.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 031403 114 LKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVGMLCL 157 (160)
Q Consensus 114 l~~~m~~yn~~p~~~dki~~i~~~v~evk~im~~Nid~iL~Rg~ 157 (160)
++.....| .+|.=.+.+-.- +..+.-.-+.+-++++|++|-
T Consensus 120 i~~vF~~f-~~~efL~~lf~~--~~~~~L~kI~~~Lnklld~g~ 160 (161)
T 3f4m_A 120 IRHVFDHF-SDPGLLTALYGP--DFTQHLGKICDGLRKLLDEGK 160 (161)
T ss_dssp HHHHHHHH-TCHHHHHHHTSG--GGHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHh-CCHHHHHHHhCc--HHHHHHHHHHHHHHHHHhCCC
Confidence 45555666 466433333332 455556667788999999984
No 47
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=29.04 E-value=46 Score=15.54 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031403 129 SKLAKVKAQVSEVKGVMM 146 (160)
Q Consensus 129 dki~~i~~~v~evk~im~ 146 (160)
.-+.+|+..+.++++-|.
T Consensus 5 ei~~kiK~kl~~akdK~k 22 (26)
T 2kfe_A 5 EFMSNLKEKLSGVKEKMK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677777777777654
No 48
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=28.13 E-value=1.3e+02 Score=20.55 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=25.1
Q ss_pred CCCCccchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 031403 101 APANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVM 145 (160)
Q Consensus 101 ~~~~~l~~~f~~~l~~~m~~yn~~p~~~dki~~i~~~v~evk~im 145 (160)
..|..+ ..-.+.|+.+..+ +....+++.+...+|+.|++.|
T Consensus 29 ~~PeDL-~~AN~LiK~m~~~---d~~r~e~~~k~~seLe~V~~nv 69 (158)
T 1naf_A 29 SHPEDL-RAANKLIKEMVQE---DQKRMEKISKRVNAIEEVNNNV 69 (158)
T ss_dssp CSTTHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhH-HHHHHHHHHHhcc---chhhHHHHHHHHHHHHHHHHHH
Confidence 456555 4445556655553 2233488888888888886543
No 49
>1z21_A YOP proteins translocation protein H; plague, type III secretion, YOPR, cell invasion; 1.50A {Yersinia pestis} SCOP: a.243.1.2
Probab=26.62 E-value=96 Score=19.68 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCCCCccchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH----HHHHhHHHHHhc
Q 031403 80 AFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKG----VMMENIEKVGML 155 (160)
Q Consensus 80 ~fL~~i~~~F~~~~~~~~~~~~~~~~l~~~f~~~l~~~m~~yn~~p~~~dki~~i~~~v~evk~----im~~Nid~iL~R 155 (160)
....-+.++....|++-...-..+.+ -|.|+.+|++| +|-....=+-+-+-+.+++. .=.+=++.++.|
T Consensus 30 ~L~~PV~e~L~arFgg~q~pV~~aiD-----~pELRa~~ReF--dPlg~r~EtvLL~vL~~ik~~~~~~g~eyL~~LaRr 102 (112)
T 1z21_A 30 VLATPVREALLARFGQHQGSVVPAID-----LPELRSVLQQF--DSFGKRWEAILLQVLEGIKPNESQVGLPYLSELINK 102 (112)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCCHHHH-----HHHHHHHHHHH--SCSSHHHHHHHHHHHHTC--------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCCcccc-----cHHHHHHHHHh--CcchhHHHHHHHHHHHHcccCCCCCchHHHHHHHHH
Confidence 34445666666677432211111111 27899999998 45322222223333333333 333345555555
Q ss_pred cc
Q 031403 156 CL 157 (160)
Q Consensus 156 g~ 157 (160)
.|
T Consensus 103 EL 104 (112)
T 1z21_A 103 EL 104 (112)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 50
>4ftx_A Protein SLM4; EGO complex, EGO3, TOR signaling, protein binding; 2.10A {Saccharomyces cerevisiae} PDB: 3lgo_A 4fuw_A
Probab=25.31 E-value=1.7e+02 Score=20.09 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=26.8
Q ss_pred CEEEEEEecCCCCcccHHHHHHHHHHHHHhhhC
Q 031403 62 GYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (160)
Q Consensus 62 ~l~~~citd~~~~~~~af~fL~~i~~~F~~~~~ 94 (160)
++-.+-|+|.+||--..-.=++.....|...|+
T Consensus 126 DLLLLfIAd~~yPyGLLv~KmK~al~af~dlyG 158 (170)
T 4ftx_A 126 DLLLLFIAEGSFPYGLLVIKIERAMRELTDLFG 158 (170)
T ss_dssp SEEEEEEEETTSCHHHHHHHHHHHHGGGGGGTT
T ss_pred CeEEEEeecCCCchHHHHHHHHHHHHHHHHHhc
Confidence 899999999999976666666777778888774
No 51
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.53 E-value=56 Score=18.44 Aligned_cols=44 Identities=2% Similarity=-0.025 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 031403 108 KEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVGMLCL 157 (160)
Q Consensus 108 ~~f~~~l~~~m~~yn~~p~~~dki~~i~~~v~evk~im~~Nid~iL~Rg~ 157 (160)
.+....+.++.+-|=+- ....|..++..+. -+.-+++++|+.+|
T Consensus 11 ~q~~~mv~~V~~mfP~v-----p~~~I~~DL~~Tg-sVe~TienILeGrl 54 (58)
T 2ejs_A 11 SQLNAMAHQIQEMFPQV-----PYHLVLQDLQLTR-SVEITTDNILEGRI 54 (58)
T ss_dssp CHHHHHHHHHHHHCCSS-----CHHHHHHHHHHHC-SHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCC-----CHHHHHHHHHHhC-CHHHHHHHHHhcCC
Confidence 44455555555665333 3467888897777 77889999999886
No 52
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=24.42 E-value=20 Score=17.36 Aligned_cols=21 Identities=19% Similarity=0.017 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHHHHhccccC
Q 031403 139 SEVKGVMMENIEKVGMLCLFH 159 (160)
Q Consensus 139 ~evk~im~~Nid~iL~Rg~~~ 159 (160)
-|-|--|++.=+.++.||+..
T Consensus 8 lerkis~rqsreelikrgvlk 28 (32)
T 4b1v_M 8 LERKISMRQSREELIKRGVLK 28 (32)
T ss_dssp HHHHHHTCCCHHHHHHTTSCC
T ss_pred HHHHHHhcccHHHHHHhhhhh
Confidence 344667888889999999864
No 53
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=23.01 E-value=82 Score=20.71 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=17.1
Q ss_pred HHHHHHHHHHH-------HHHHHHHHhHHHHHh
Q 031403 129 SKLAKVKAQVS-------EVKGVMMENIEKVGM 154 (160)
Q Consensus 129 dki~~i~~~v~-------evk~im~~Nid~iL~ 154 (160)
+.+.++...|+ +.+..+.+||+.+++
T Consensus 51 ~ei~~l~~~i~~~~~ve~dLrr~~~~nIkRL~~ 83 (126)
T 2vqe_M 51 AEVVRLREYVENTWKLEGELRAEVAANIKRLMD 83 (126)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHH
Confidence 44444444444 567778888888887
Done!