BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031405
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XN0|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN0|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN1|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|C Chain C, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|D Chain D, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
Length = 732
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 21/75 (28%)
Query: 52 YRPVRLAKLATDKI--LTPQYGTSILYPKSGGNMHCFTAVTPCAVLDILTPPYNEDAGRK 109
Y P A TD I L QYGTS++YP+S H +V+P NE GR
Sbjct: 544 YTPQIWASDNTDAIERLKIQYGTSLVYPQSMMTSH--VSVSP-----------NEQNGRI 590
Query: 110 CTYYVDYPFSTFSAV 124
PF+T AV
Sbjct: 591 T------PFNTRGAV 599
>pdb|2XN2|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Galactose
Length = 732
Score = 29.3 bits (64), Expect = 1.1, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 21/75 (28%)
Query: 52 YRPVRLAKLATDKI--LTPQYGTSILYPKSGGNMHCFTAVTPCAVLDILTPPYNEDAGRK 109
Y P A TD I L QYGTS++YP+S H +V+P NE GR
Sbjct: 544 YTPQIWASDNTDAIERLKIQYGTSLVYPQSMMTSH--VSVSP-----------NEQNGRI 590
Query: 110 CTYYVDYPFSTFSAV 124
PF+T AV
Sbjct: 591 T------PFNTRGAV 599
>pdb|2ATF|A Chain A, X-Ray Structure Of Cysteine Dioxygenase Type I From Mus
Musculus Mm.241056
pdb|2Q4S|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cysteine Dioxygenase Type I From Mus Musculus Mm.241056
Length = 200
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 1 MCIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDW 38
+ I C+ +HDH F K+L G++ +DW
Sbjct: 72 LXILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDW 109
>pdb|2B5H|A Chain A, 1.5 A Resolution Crystal Structure Of Recombinant R.
Norvegicus Cysteine Dioxygenase
pdb|2GH2|A Chain A, 1.5 A Resolution R. Norvegicus Cysteine Dioxygenase
Structure Crystallized In The Presence Of Cysteine
pdb|3ELN|A Chain A, A Putative Fe2+-Bound Persulfenate Intermediate In
Cysteine Dioxygenase
Length = 200
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 1 MCIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDW 38
+ I C+ +HDH F K+L G++ +DW
Sbjct: 72 LMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDW 109
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 17 HPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYG-TSIL 75
HP +T VL + H++ V +F E GPG + +A AT + P+YG T+
Sbjct: 271 HPLVTSTDIVLTITKHLRQVGVV--GKFVEFFGPGVAQLSIADRATIANMCPEYGATATF 328
Query: 76 YP 77
+P
Sbjct: 329 FP 330
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 17 HPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYG-TSIL 75
HP +T VL + H++ V +F E GPG + +A AT + P+YG T+
Sbjct: 251 HPLVTSTDIVLTITKHLRQVGVV--GKFVEFFGPGVAQLSIADRATIANMCPEYGATAAF 308
Query: 76 YP 77
+P
Sbjct: 309 FP 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,733,020
Number of Sequences: 62578
Number of extensions: 240578
Number of successful extensions: 323
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 7
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)