Query 031405
Match_columns 160
No_of_seqs 106 out of 191
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 13:38:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07847 DUF1637: Protein of u 100.0 6.1E-64 1.3E-68 408.8 15.0 154 1-158 46-200 (200)
2 KOG4281 Uncharacterized conser 100.0 6.3E-62 1.4E-66 399.0 12.2 157 1-159 77-235 (236)
3 PF05995 CDO_I: Cysteine dioxy 98.4 2.4E-06 5.2E-11 68.2 9.3 94 2-115 78-174 (175)
4 PF07883 Cupin_2: Cupin domain 97.1 0.0023 5E-08 42.0 6.2 69 2-98 1-71 (71)
5 TIGR03404 bicupin_oxalic bicup 96.9 0.0074 1.6E-07 53.6 9.5 79 1-102 247-327 (367)
6 PRK13290 ectC L-ectoine syntha 96.8 0.017 3.7E-07 44.0 9.5 72 4-103 40-112 (125)
7 COG1917 Uncharacterized conser 95.3 0.023 5E-07 42.3 3.9 72 1-100 45-118 (131)
8 KOG4064 Cysteine dioxygenase C 94.3 0.045 9.7E-07 44.2 3.3 87 3-104 76-165 (196)
9 COG0662 {ManC} Mannose-6-phosp 93.4 1.1 2.4E-05 33.5 9.3 82 2-112 39-122 (127)
10 TIGR01479 GMP_PMI mannose-1-ph 90.8 2.3 4.9E-05 38.7 9.7 75 2-104 379-455 (468)
11 TIGR03404 bicupin_oxalic bicup 89.0 3.6 7.9E-05 36.6 9.4 75 3-101 71-146 (367)
12 TIGR02451 anti_sig_ChrR anti-s 88.5 0.59 1.3E-05 38.5 3.8 30 2-32 130-159 (215)
13 COG5553 Predicted metal-depend 86.8 1 2.2E-05 36.7 4.1 33 4-37 78-110 (191)
14 PF12973 Cupin_7: ChrR Cupin-l 84.3 0.59 1.3E-05 32.9 1.4 30 2-32 27-56 (91)
15 PRK15460 cpsB mannose-1-phosph 84.1 10 0.00022 35.1 9.8 76 3-106 389-466 (478)
16 smart00835 Cupin_1 Cupin. This 83.6 1.7 3.6E-05 33.0 3.8 36 2-37 33-68 (146)
17 PRK09943 DNA-binding transcrip 80.4 15 0.00033 28.8 8.3 28 73-102 155-184 (185)
18 PF00190 Cupin_1: Cupin; Inte 78.6 19 0.00041 27.1 8.1 33 4-37 39-71 (144)
19 TIGR03214 ura-cupin putative a 77.2 3.3 7.1E-05 34.9 3.9 32 1-33 181-213 (260)
20 TIGR01221 rmlC dTDP-4-dehydror 69.2 38 0.00082 27.2 8.0 93 7-114 52-147 (176)
21 COG1898 RfbC dTDP-4-dehydrorha 68.5 23 0.00049 28.7 6.6 83 8-105 54-138 (173)
22 PF05523 FdtA: WxcM-like, C-te 65.7 19 0.00041 27.3 5.4 85 6-113 40-126 (131)
23 PF01050 MannoseP_isomer: Mann 57.5 88 0.0019 24.5 8.0 72 4-103 68-141 (151)
24 PRK12335 tellurite resistance 54.8 43 0.00094 28.1 6.2 29 9-37 21-50 (287)
25 PRK11171 hypothetical protein; 53.9 21 0.00045 30.2 4.1 33 2-34 187-219 (266)
26 PF09313 DUF1971: Domain of un 52.4 73 0.0016 22.6 6.2 53 18-91 23-75 (82)
27 PF11142 DUF2917: Protein of u 45.9 24 0.00053 23.7 2.7 32 3-36 1-32 (63)
28 COG3822 ABC-type sugar transpo 39.6 1.5E+02 0.0033 25.0 6.9 35 3-37 90-125 (225)
29 PLN00212 glutelin; Provisional 36.0 47 0.001 31.1 3.9 34 4-37 353-386 (493)
30 PRK11171 hypothetical protein; 29.6 3.4E+02 0.0074 22.8 9.5 33 2-34 64-97 (266)
31 COG2140 Thermophilic glucose-6 29.2 3.4E+02 0.0075 22.7 9.5 78 2-102 83-164 (209)
32 PF11699 CENP-C_C: Mif2/CENP-C 27.5 68 0.0015 22.9 2.7 34 2-35 15-48 (85)
33 COG2957 Peptidylarginine deimi 27.4 34 0.00073 30.6 1.3 14 79-92 332-345 (346)
34 PF07385 DUF1498: Protein of u 26.5 2.1E+02 0.0045 24.4 5.8 106 3-116 91-202 (225)
35 PF00970 FAD_binding_6: Oxidor 25.0 2E+02 0.0043 19.5 4.8 29 14-42 28-57 (99)
36 PF01958 DUF108: Domain of unk 24.9 59 0.0013 23.7 2.0 21 77-97 49-69 (92)
37 PF00908 dTDP_sugar_isom: dTDP 23.0 3.9E+02 0.0085 21.3 7.9 92 7-113 51-146 (176)
38 PRK10371 DNA-binding transcrip 21.4 1.1E+02 0.0025 25.8 3.4 33 2-35 29-61 (302)
39 COG1531 Uncharacterized protei 20.6 47 0.001 23.7 0.8 13 3-15 47-59 (77)
40 PF04621 ETS_PEA3_N: PEA3 subf 20.1 33 0.00072 30.7 -0.1 28 133-160 54-87 (341)
No 1
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=100.00 E-value=6.1e-64 Score=408.83 Aligned_cols=154 Identities=56% Similarity=1.017 Sum_probs=135.3
Q ss_pred CeeEeecCCCcccCCCCCCCeeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCC
Q 031405 1 MCIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSG 80 (160)
Q Consensus 1 m~iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~g 80 (160)
||||+||+|++|||||||||||||||||||+||+||||+++..... ....+.++|+++.|.++++++++++|+|++|
T Consensus 46 i~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~---~~~~~~~~a~~~~d~~~~a~~~~~vL~P~~g 122 (200)
T PF07847_consen 46 IGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSI---EGQRQPRLARLVVDGEMTAPSDTCVLYPTSG 122 (200)
T ss_pred EEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccc---cccccceeeEEEecceecCCCCCeEEccCCC
Confidence 7999999999999999999999999999999999999998533211 1234578999999999999999999999999
Q ss_pred CceeEEEecC-CeeEEEEeCCCCCCCCCCcceeeeeCCCCCccccCCCCCCCCceeEEEEeCCCCCeeeeCccCCCCee
Q 031405 81 GNMHCFTAVT-PCAVLDILTPPYNEDAGRKCTYYVDYPFSTFSAVNGADNEKEEYAWLSEIDTPDDLHMRPGVYAGPAI 158 (160)
Q Consensus 81 gNlH~~~a~~-p~AflDiL~PPY~~~~~R~C~YY~~~p~~~~~~~~~~~~~~~~~~~L~ei~~P~df~~~~~~Y~GP~i 158 (160)
||||+|+|++ ||||||||+|||+.+.||+|+||++++..... ....+.++.+++||+||++|+||||++++|+||+|
T Consensus 123 gNiH~f~a~~~p~AflDIL~PPY~~~~gR~C~YY~~~~~~~~~-~~~~~~~~~~~~~L~ei~~P~df~~~~~~Y~GP~v 200 (200)
T PF07847_consen 123 GNIHEFTALTGPCAFLDILAPPYDPDDGRDCTYYRPVPFSSSS-EQLPSEQDEQYVWLEEIPPPDDFYCDSGPYRGPPV 200 (200)
T ss_pred CeeEEEEeCCCCeEEEEEccCCCCCCCCCCcEEEeecCCcccc-cccccccCCCeEEEEEcCCCCCEEEeeeeeCCCCC
Confidence 9999999998 99999999999999989999999999876653 11223444589999999999999999999999986
No 2
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.3e-62 Score=398.99 Aligned_cols=157 Identities=61% Similarity=1.104 Sum_probs=142.4
Q ss_pred CeeEeecCCCcccCCCCCCCeeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCC
Q 031405 1 MCIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSG 80 (160)
Q Consensus 1 m~iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~g 80 (160)
|||||||+|++||||||||||||||+|||+|||+||||+++.+.+... + ...+|+|+++.|..+|++|+++.|||+.|
T Consensus 77 igiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyDw~ePd~~~~~d-p-~q~~r~akl~~d~~~T~~s~~~~LyP~~g 154 (236)
T KOG4281|consen 77 IGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYDWVEPDEPQTED-P-HQPVRPAKLVSDKEFTAASPASTLYPKTG 154 (236)
T ss_pred EEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeeccccCCCCcccCC-C-CcceeeeeEeccceecCCCCCcEeeecCC
Confidence 799999999999999999999999999999999999999876643221 1 23489999999999999999999999999
Q ss_pred CceeEEEecCCeeEEEEeCCCCCCCCCCcceeeeeCCCCCccccCC--CCCCCCceeEEEEeCCCCCeeeeCccCCCCee
Q 031405 81 GNMHCFTAVTPCAVLDILTPPYNEDAGRKCTYYVDYPFSTFSAVNG--ADNEKEEYAWLSEIDTPDDLHMRPGVYAGPAI 158 (160)
Q Consensus 81 gNlH~~~a~~p~AflDiL~PPY~~~~~R~C~YY~~~p~~~~~~~~~--~~~~~~~~~~L~ei~~P~df~~~~~~Y~GP~i 158 (160)
||+|+|+|+++|||||||+|||+.+.||+|+|||+.+.++++.+.. .++...+++||+|+.+|+||||.+++|+||+|
T Consensus 155 gn~h~f~a~t~cAvlDILsPPY~~~~gR~C~Yyr~~p~~~~~~~~~~s~~~~~~~~~wL~E~~~~D~f~~~~~~Y~gp~i 234 (236)
T KOG4281|consen 155 GNHHCFTAITPCAVLDILSPPYDSDHGRHCTYYRDYPFSSLSGDCVVSSEEEKEDVAWLEERQPPDDFVCRGEPYRGPKI 234 (236)
T ss_pred CcEeeeeeccceeEEeeccCCCCCCCCcCceEEeccCccccCCceeecCccccccceeeeccCCcccceEeccccCCCcc
Confidence 9999999999999999999999999999999999999998874332 25666799999999999999999999999998
Q ss_pred c
Q 031405 159 Q 159 (160)
Q Consensus 159 ~ 159 (160)
+
T Consensus 235 ~ 235 (236)
T KOG4281|consen 235 R 235 (236)
T ss_pred C
Confidence 6
No 3
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=98.39 E-value=2.4e-06 Score=68.18 Aligned_cols=94 Identities=23% Similarity=0.489 Sum_probs=59.8
Q ss_pred eeEeecCCCcccCCCCCCCeeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCCC
Q 031405 2 CIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGG 81 (160)
Q Consensus 2 ~iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~gg 81 (160)
-+++.+||..-|.|||.+..++.+||.|.++-+-|.|.+... . .+.. .....+. +.+...+.+..
T Consensus 78 ~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~---------~--~~~~-~~~~~~~-~~g~~~~~~~~-- 142 (175)
T PF05995_consen 78 WLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGG---------A--PLEL-VGRERLL-PGGVTYIFDPH-- 142 (175)
T ss_dssp EEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS------------EEEE-CEEEEEE-TTTEEEEBTTT--
T ss_pred EEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCccc---------C--cccc-cCceEec-CCCeEEecCCC--
Confidence 367889999999999999999999999999999999875411 0 1111 1122222 33345455543
Q ss_pred ceeEEEec---CCeeEEEEeCCCCCCCCCCcceeeee
Q 031405 82 NMHCFTAV---TPCAVLDILTPPYNEDAGRKCTYYVD 115 (160)
Q Consensus 82 NlH~~~a~---~p~AflDiL~PPY~~~~~R~C~YY~~ 115 (160)
-||++.+. +++.=|=|.+||| +.|+.|.+
T Consensus 143 ~iH~v~n~s~~~~avSLHvYspPl-----~~~~~y~~ 174 (175)
T PF05995_consen 143 GIHRVENPSGDEPAVSLHVYSPPL-----EQCRIYDE 174 (175)
T ss_dssp BEEEEEES-SSS-EEEEEEEES-------SEEEEE-T
T ss_pred CeEEeccCCCCCCEEEEEEcCCCh-----hhcccccC
Confidence 59999643 5899999999996 46988864
No 4
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=97.09 E-value=0.0023 Score=42.01 Aligned_cols=69 Identities=32% Similarity=0.490 Sum_probs=50.1
Q ss_pred eeEeecCCCcccCCCCCCCeeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCCC
Q 031405 2 CIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGG 81 (160)
Q Consensus 2 ~iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~gg 81 (160)
|++.|+||+.+|.|-|++...+.-||.|++.++ .+ . . + ..+.+ +-+++.|. |
T Consensus 1 ~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~---~-----------~--~-------~~l~~--Gd~~~i~~--~ 52 (71)
T PF07883_consen 1 GLVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VD---G-----------E--R-------VELKP--GDAIYIPP--G 52 (71)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEEESEEEEE-ET---T-----------E--E-------EEEET--TEEEEEET--T
T ss_pred CEEEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ec---c-----------E--E-------eEccC--CEEEEECC--C
Confidence 578899999999999999999999999999987 43 0 0 0 01111 22344454 3
Q ss_pred ceeEEEec--CCeeEEEEe
Q 031405 82 NMHCFTAV--TPCAVLDIL 98 (160)
Q Consensus 82 NlH~~~a~--~p~AflDiL 98 (160)
--|.+.+. ++|.||.|.
T Consensus 53 ~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 53 VPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp SEEEEEEESSSEEEEEEEE
T ss_pred CeEEEEECCCCCEEEEEEC
Confidence 78999987 478898873
No 5
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=96.90 E-value=0.0074 Score=53.57 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=59.1
Q ss_pred CeeEeecCCCcccCCCCCCCeeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCC
Q 031405 1 MCIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSG 80 (160)
Q Consensus 1 m~iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~g 80 (160)
|+.+.|++|+..++|-||+..=|.-||.|+++++.+|- .. ..+. ..+.++ -.++.|.
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~---~g----------~~~~------~~l~~G--D~~~iP~-- 303 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAA---GG----------NART------FDYQAG--DVGYVPR-- 303 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEec---CC----------cEEE------EEECCC--CEEEECC--
Confidence 46788999999999999999999999999999988762 10 0011 122233 2555565
Q ss_pred CceeEEEec--CCeeEEEEeCCCC
Q 031405 81 GNMHCFTAV--TPCAVLDILTPPY 102 (160)
Q Consensus 81 gNlH~~~a~--~p~AflDiL~PPY 102 (160)
|-.|.|.+. +++-||-++..+.
T Consensus 304 g~~H~i~N~G~e~l~fL~if~s~~ 327 (367)
T TIGR03404 304 NMGHYVENTGDETLVFLEVFKADR 327 (367)
T ss_pred CCeEEEEECCCCCEEEEEEECCCC
Confidence 489999987 4899999998873
No 6
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=96.78 E-value=0.017 Score=43.99 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=52.0
Q ss_pred EeecCCCcccCCCCCCCeeEeeEeeeceEEEEe-eccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCCCc
Q 031405 4 FCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAY-DWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGGN 82 (160)
Q Consensus 4 F~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Sy-d~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~ggN 82 (160)
|.|+||+.+|.|-|... -+.-||.|++.++.+ +-. . ..+.+ +-++..|. +-
T Consensus 40 ~~l~pG~~~~~h~h~~~-E~~yVL~G~~~~~~i~~g~--------------~---------~~L~a--GD~i~~~~--~~ 91 (125)
T PRK13290 40 TTIYAGTETHLHYKNHL-EAVYCIEGEGEVEDLATGE--------------V---------HPIRP--GTMYALDK--HD 91 (125)
T ss_pred EEECCCCcccceeCCCE-EEEEEEeCEEEEEEcCCCE--------------E---------EEeCC--CeEEEECC--CC
Confidence 68899999999999876 599999999998743 200 0 01111 22333443 36
Q ss_pred eeEEEecCCeeEEEEeCCCCC
Q 031405 83 MHCFTAVTPCAVLDILTPPYN 103 (160)
Q Consensus 83 lH~~~a~~p~AflDiL~PPY~ 103 (160)
-|++.+.+++.||.|++||.-
T Consensus 92 ~H~~~N~e~~~~l~v~tP~~~ 112 (125)
T PRK13290 92 RHYLRAGEDMRLVCVFNPPLT 112 (125)
T ss_pred cEEEEcCCCEEEEEEECCCCC
Confidence 899999999999999999854
No 7
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=95.33 E-value=0.023 Score=42.28 Aligned_cols=72 Identities=29% Similarity=0.333 Sum_probs=50.0
Q ss_pred CeeEeecCCCcccCCCCCCCeeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCC
Q 031405 1 MCIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSG 80 (160)
Q Consensus 1 m~iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~g 80 (160)
+..|.+.+|+++|.|.||......-||.|.++++-=. +. +. -..+|. +.-|.
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g---~~-------------~~-l~~Gd~---------i~ip~-- 96 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEG---EK-------------KE-LKAGDV---------IIIPP-- 96 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEecC---Cc-------------eE-ecCCCE---------EEECC--
Confidence 3579999999999999998889999999999864321 00 00 111222 23343
Q ss_pred CceeEEEecCCe--eEEEEeCC
Q 031405 81 GNMHCFTAVTPC--AVLDILTP 100 (160)
Q Consensus 81 gNlH~~~a~~p~--AflDiL~P 100 (160)
|-.|.+.|.+.. ++|.|..+
T Consensus 97 g~~H~~~a~~~~~~~~l~v~~~ 118 (131)
T COG1917 97 GVVHGLKAVEDEPMVLLLVFPL 118 (131)
T ss_pred CCeeeeccCCCCceeEEEEeee
Confidence 388999998644 88888877
No 8
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=94.31 E-value=0.045 Score=44.21 Aligned_cols=87 Identities=20% Similarity=0.466 Sum_probs=59.9
Q ss_pred eEeecCCCcccCCCCCCCeeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCCCc
Q 031405 3 IFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGGN 82 (160)
Q Consensus 3 iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~ggN 82 (160)
|.|--+|----.|||-+-+-|+|+|.|.++=+-|.|-|..... +.+. .+.++. -.+++.+--.- -
T Consensus 76 ILCWGeGhgSSvHDHtdsHCF~KmL~G~L~Et~yawPd~ks~e-----------~v~i-sE~~~~-~N~vaYiND~l--G 140 (196)
T KOG4064|consen 76 ILCWGEGHGSSVHDHTDSHCFVKMLDGELTETKYAWPDRKSHE-----------PVDI-SEKTYG-MNGVAYINDEL--G 140 (196)
T ss_pred EEEecCCCCccccccccchhHHHHhcCcchhhcccCCCcccCc-----------cccc-cceeee-ccceEEecccc--c
Confidence 6677788777899999999999999999999999997542210 1111 112221 22333332222 5
Q ss_pred eeEEEecC---CeeEEEEeCCCCCC
Q 031405 83 MHCFTAVT---PCAVLDILTPPYNE 104 (160)
Q Consensus 83 lH~~~a~~---p~AflDiL~PPY~~ 104 (160)
||+..+++ ++.=|-+..|||+.
T Consensus 141 LHRvEN~SHs~~aVSLHLY~PPfdT 165 (196)
T KOG4064|consen 141 LHRVENLSHSNGAVSLHLYIPPFDT 165 (196)
T ss_pred ceeccccccCCCceEEEEecCCcch
Confidence 89998863 78899999999985
No 9
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=93.39 E-value=1.1 Score=33.50 Aligned_cols=82 Identities=20% Similarity=0.247 Sum_probs=57.2
Q ss_pred eeEeecCCCcccCCCCCCCeeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCCC
Q 031405 2 CIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGG 81 (160)
Q Consensus 2 ~iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~gg 81 (160)
+.+.+++|..+.+|-|..=--+--||.|.+.|.-=+ . . ..+.++ =+++-|. |
T Consensus 39 ~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~----~--------------~------~~v~~g--d~~~iP~--g 90 (127)
T COG0662 39 ARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG----E--------------E------VEVKAG--DSVYIPA--G 90 (127)
T ss_pred EEEEECCCcccCcccccCcceEEEEEeeEEEEEECC----E--------------E------EEecCC--CEEEECC--C
Confidence 567899999999999999778889999998864211 0 0 011111 2333454 4
Q ss_pred ceeEEEecC--CeeEEEEeCCCCCCCCCCccee
Q 031405 82 NMHCFTAVT--PCAVLDILTPPYNEDAGRKCTY 112 (160)
Q Consensus 82 NlH~~~a~~--p~AflDiL~PPY~~~~~R~C~Y 112 (160)
-.|.+.+.+ |-.|++|-+|+|..+ +.-|.+
T Consensus 91 ~~H~~~N~G~~~L~liei~~p~~~~e-~~~~~~ 122 (127)
T COG0662 91 TPHRVRNTGKIPLVLIEVQSPPYLGE-DDIVRT 122 (127)
T ss_pred CcEEEEcCCCcceEEEEEecCCcCCC-ceEEEe
Confidence 899999874 899999999999854 344443
No 10
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=90.82 E-value=2.3 Score=38.74 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=51.8
Q ss_pred eeEeecCCCcccCCCCCCCeeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCCC
Q 031405 2 CIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGG 81 (160)
Q Consensus 2 ~iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~gg 81 (160)
..+.++||+.+++|-|+.=.-..-||.|++.++ .| ... ..+.+ +-++..|. |
T Consensus 379 ~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~-~d---g~~--------------------~~l~~--GDsi~ip~--~ 430 (468)
T TIGR01479 379 KRITVKPGEKLSLQMHHHRAEHWIVVSGTARVT-IG---DET--------------------LLLTE--NESTYIPL--G 430 (468)
T ss_pred EEEEECCCCccCccccCCCceEEEEEeeEEEEE-EC---CEE--------------------EEecC--CCEEEECC--C
Confidence 467889999999888875555458999999975 21 110 11111 22444454 3
Q ss_pred ceeEEEec--CCeeEEEEeCCCCCC
Q 031405 82 NMHCFTAV--TPCAVLDILTPPYNE 104 (160)
Q Consensus 82 NlH~~~a~--~p~AflDiL~PPY~~ 104 (160)
--|.|.+. +|+-||-|.+|+|-.
T Consensus 431 ~~H~~~N~g~~~~~~i~v~~~~~~~ 455 (468)
T TIGR01479 431 VIHRLENPGKIPLELIEVQSGSYLG 455 (468)
T ss_pred CcEEEEcCCCCCEEEEEEEcCCCCC
Confidence 78999987 489999999999853
No 11
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=89.04 E-value=3.6 Score=36.60 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=52.0
Q ss_pred eEeecCCCcccCCCCCCCeeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCCCc
Q 031405 3 IFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGGN 82 (160)
Q Consensus 3 iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~ggN 82 (160)
..-|.+|+.+|+|.|.++- +.-||.|++++...|- . .+... + .+.++ -.++.|. |-
T Consensus 71 ~~~l~pG~~~~~HwH~~~E-~~yVl~G~~~v~~~d~---~----------g~~~~-----~-~L~~G--D~~~fP~--g~ 126 (367)
T TIGR03404 71 NMRLEPGAIRELHWHKEAE-WAYVLYGSCRITAVDE---N----------GRNYI-----D-DVGAG--DLWYFPP--GI 126 (367)
T ss_pred EEEEcCCCCCCcccCCCce-EEEEEeeEEEEEEEcC---C----------CcEEE-----e-EECCC--CEEEECC--CC
Confidence 4568999999999999986 9999999999987751 0 01110 0 12222 2345564 48
Q ss_pred eeEEEec-CCeeEEEEeCCC
Q 031405 83 MHCFTAV-TPCAVLDILTPP 101 (160)
Q Consensus 83 lH~~~a~-~p~AflDiL~PP 101 (160)
+|.+.+. +.+.|+=++.+.
T Consensus 127 ~H~~~n~~~~~~~l~vf~~~ 146 (367)
T TIGR03404 127 PHSLQGLDEGCEFLLVFDDG 146 (367)
T ss_pred eEEEEECCCCeEEEEEeCCc
Confidence 9999987 468888888776
No 12
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=88.52 E-value=0.59 Score=38.48 Aligned_cols=30 Identities=27% Similarity=0.530 Sum_probs=26.3
Q ss_pred eeEeecCCCcccCCCCCCCeeEeeEeeeceE
Q 031405 2 CIFCFPTSAVIPLHDHPGMTVFSKVLYGSMH 32 (160)
Q Consensus 2 ~iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~ 32 (160)
.++.+++|+.+|.|.|.|.- +.-||.|+..
T Consensus 130 ~Ll~i~pG~~~p~H~H~G~E-~tlVLeG~f~ 159 (215)
T TIGR02451 130 RLLYIEAGQSIPQHTHKGFE-LTLVLHGAFS 159 (215)
T ss_pred EEEEECCCCccCCCcCCCcE-EEEEEEEEEE
Confidence 46778999999999999988 7789999963
No 13
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=86.82 E-value=1 Score=36.71 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=27.9
Q ss_pred EeecCCCcccCCCCCCCeeEeeEeeeceEEEEee
Q 031405 4 FCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYD 37 (160)
Q Consensus 4 F~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd 37 (160)
|.+-||..-|.||| +|-++.-||.|.=.=.-|-
T Consensus 78 ~t~~PG~~~p~HnH-~~wglVgil~G~E~n~~y~ 110 (191)
T COG5553 78 ITLSPGVQYPPHNH-LMWGLVGILWGGETNFIYP 110 (191)
T ss_pred EEeCCCcccCCccc-chheeeeeeecccccceec
Confidence 78899999999999 7999999999987544443
No 14
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=84.27 E-value=0.59 Score=32.88 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=22.5
Q ss_pred eeEeecCCCcccCCCCCCCeeEeeEeeeceE
Q 031405 2 CIFCFPTSAVIPLHDHPGMTVFSKVLYGSMH 32 (160)
Q Consensus 2 ~iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~ 32 (160)
.+.-+.||+++|.|+|++---+ =||.|++.
T Consensus 27 ~L~r~~pG~~~p~H~H~g~ee~-~VLeG~~~ 56 (91)
T PF12973_consen 27 SLLRLEPGASLPRHRHPGGEEI-LVLEGELS 56 (91)
T ss_dssp EEEEE-TTEEEEEEEESS-EEE-EEEECEEE
T ss_pred EEEEECCCCCcCccCCCCcEEE-EEEEEEEE
Confidence 3455789999999999985544 78999887
No 15
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=84.14 E-value=10 Score=35.06 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=49.9
Q ss_pred eEeecCCCcccCCCCCCCeeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCCCc
Q 031405 3 IFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGGN 82 (160)
Q Consensus 3 iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~ggN 82 (160)
...++||+.+++|-|..-.=..-||.|++.+.-=+ ....-..+-++..|. |=
T Consensus 389 ~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg--------------------------~~~~L~~GDSi~ip~--g~ 440 (478)
T PRK15460 389 RITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG--------------------------DIKLLGENESIYIPL--GA 440 (478)
T ss_pred EEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC--------------------------EEEEecCCCEEEECC--CC
Confidence 45678998887777765544455888888764211 011111223445554 37
Q ss_pred eeEEEec--CCeeEEEEeCCCCCCCC
Q 031405 83 MHCFTAV--TPCAVLDILTPPYNEDA 106 (160)
Q Consensus 83 lH~~~a~--~p~AflDiL~PPY~~~~ 106 (160)
.|.+.+. +|+-||-|.+|+|..++
T Consensus 441 ~H~~~N~g~~~l~iI~V~~g~yl~ed 466 (478)
T PRK15460 441 THCLENPGKIPLDLIEVRSGSYLEED 466 (478)
T ss_pred cEEEEcCCCCCEEEEEEEcCCCCCCC
Confidence 9999997 49999999999997543
No 16
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=83.55 E-value=1.7 Score=32.98 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=30.6
Q ss_pred eeEeecCCCcccCCCCCCCeeEeeEeeeceEEEEee
Q 031405 2 CIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYD 37 (160)
Q Consensus 2 ~iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd 37 (160)
..+.+++|+..+.|-|++..-+.-||.|++.+..-+
T Consensus 33 ~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~ 68 (146)
T smart00835 33 ARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVD 68 (146)
T ss_pred EEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEe
Confidence 456789999999999998778889999999987443
No 17
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=80.44 E-value=15 Score=28.82 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=21.8
Q ss_pred eEEeeCCCCceeEEEec--CCeeEEEEeCCCC
Q 031405 73 SILYPKSGGNMHCFTAV--TPCAVLDILTPPY 102 (160)
Q Consensus 73 ~vL~P~~ggNlH~~~a~--~p~AflDiL~PPY 102 (160)
++.+|. +-.|.+.+. ++|.||-+.+||+
T Consensus 155 ~~~~~~--~~~H~~~n~~~~~~~~l~~~~p~~ 184 (185)
T PRK09943 155 SYAINT--GIPHSFSNTSAGICRIISAHTPTT 184 (185)
T ss_pred EEEEcC--CCCeeeeCCCCCCeEEEEEeCCCC
Confidence 445554 389999987 4899999999984
No 18
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=78.64 E-value=19 Score=27.09 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=29.8
Q ss_pred EeecCCCcccCCCCCCCeeEeeEeeeceEEEEee
Q 031405 4 FCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYD 37 (160)
Q Consensus 4 F~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd 37 (160)
..|.+|+.++.|-| .-+-+.=|+.|++++.-.+
T Consensus 39 ~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~ 71 (144)
T PF00190_consen 39 VLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVG 71 (144)
T ss_dssp EEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEE
T ss_pred eehhcCCccceeEe-eeeEEeeeeccceEEEEEe
Confidence 34599999999999 9999999999999987776
No 19
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=77.22 E-value=3.3 Score=34.95 Aligned_cols=32 Identities=25% Similarity=0.214 Sum_probs=26.7
Q ss_pred CeeEeecCCCcccC-CCCCCCeeEeeEeeeceEE
Q 031405 1 MCIFCFPTSAVIPL-HDHPGMTVFSKVLYGSMHV 33 (160)
Q Consensus 1 m~iF~l~~g~~IPL-HDHP~M~vlsKvL~Gs~~v 33 (160)
|.+|.|+||+.||. |-|..++++ -||.|+..+
T Consensus 181 ~~~~~~~PG~~~~~~~~H~~eh~~-yiL~G~G~~ 213 (260)
T TIGR03214 181 VHILSFEPGASHPYIETHVMEHGL-YVLEGKGVY 213 (260)
T ss_pred EEEEEECCCcccCCcccccceeEE-EEEeceEEE
Confidence 57899999999996 778866777 788888875
No 20
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=69.23 E-value=38 Score=27.24 Aligned_cols=93 Identities=17% Similarity=0.162 Sum_probs=65.1
Q ss_pred cCCCcccCCCC--CCCeeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCCCcee
Q 031405 7 PTSAVIPLHDH--PGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGGNMH 84 (160)
Q Consensus 7 ~~g~~IPLHDH--P~M~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~ggNlH 84 (160)
.+|..==||-| +++.=+.+|+.|++..-.+|.-..+. ...+... ..+++.....++-|. |--|
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~Sp-------TfG~~~~------~~L~~~~~~~l~IP~--G~aH 116 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSP-------TFGKWVG------VLLSAENKRQLWIPE--GFAH 116 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcC-------CCCeEEE------EEECCCCCCEEEeCC--ccee
Confidence 44666678888 78999999999999999999653221 0122222 256666666766675 4999
Q ss_pred EEEecCC-eeEEEEeCCCCCCCCCCcceeee
Q 031405 85 CFTAVTP-CAVLDILTPPYNEDAGRKCTYYV 114 (160)
Q Consensus 85 ~~~a~~p-~AflDiL~PPY~~~~~R~C~YY~ 114 (160)
-|.+++. +.++=..+=+|+.+..+..+|-.
T Consensus 117 GF~~L~d~a~v~Y~~~~~y~p~~e~gi~~~D 147 (176)
T TIGR01221 117 GFVVLSDEAEFLYKCTDYYAPEYERGIIWND 147 (176)
T ss_pred EEEEcCCCeEEEEeCCCCcCcccccccCCCC
Confidence 9999975 66777778999987655555543
No 21
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=68.53 E-value=23 Score=28.70 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=54.6
Q ss_pred CCCcccCCCCCCC-eeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCCCceeEE
Q 031405 8 TSAVIPLHDHPGM-TVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGGNMHCF 86 (160)
Q Consensus 8 ~g~~IPLHDHP~M-~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~ggNlH~~ 86 (160)
+|..==||=|.-- .-+.+++.|++.+..+|.-+.+. ....+. -.++++.+.-.++-|. |--|-|
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~Sp-------Tyg~~~------~~~ls~~N~~~l~IP~--G~AHGf 118 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSP-------TYGKWV------GVVLSAENKRQLYIPP--GFAHGF 118 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCC-------CcceEE------EEEecCCCceEEEeCC--ccccee
Confidence 4555568888777 99999999999999999754221 011111 1356666666666664 599999
Q ss_pred EecCCe-eEEEEeCCCCCCC
Q 031405 87 TAVTPC-AVLDILTPPYNED 105 (160)
Q Consensus 87 ~a~~p~-AflDiL~PPY~~~ 105 (160)
.+++.. .|+=..+=.|+.+
T Consensus 119 ~~L~d~~~~~y~~~~~Y~p~ 138 (173)
T COG1898 119 QVLSDDAEVVYKVTEEYDPE 138 (173)
T ss_pred EEccCceEEEEEecceeCcc
Confidence 999754 4444444456544
No 22
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=65.69 E-value=19 Score=27.29 Aligned_cols=85 Identities=25% Similarity=0.348 Sum_probs=43.3
Q ss_pred ecCCCcccCCCCCCCeeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCCCceeE
Q 031405 6 FPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGGNMHC 85 (160)
Q Consensus 6 l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~ggNlH~ 85 (160)
.|+|.+=-.|-|..++=+.=++.|+++|...|+... .+-++++++ ..++-|. |..|+
T Consensus 40 ~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~--------------------~~~~L~~~~-~~L~Ipp--g~w~~ 96 (131)
T PF05523_consen 40 VPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREE--------------------EEFILDEPN-KGLYIPP--GVWHG 96 (131)
T ss_dssp --SS--EEEEEESS--EEEEEEES-EEEEEE-SS-E--------------------EEEEE--TT-EEEEE-T--T-EEE
T ss_pred CCCCCcccccccccccEEEEEEeCEEEEEEecCCCc--------------------EEEEECCCC-eEEEECC--chhhH
Confidence 467777789999999999999999999998875321 112445555 3444443 49999
Q ss_pred EEecCC-eeEEEEeCCCCCCCCC-Ccceee
Q 031405 86 FTAVTP-CAVLDILTPPYNEDAG-RKCTYY 113 (160)
Q Consensus 86 ~~a~~p-~AflDiL~PPY~~~~~-R~C~YY 113 (160)
|.+.++ |..|=+-+=+|+.++. |+-..|
T Consensus 97 ~~~~s~~svlLv~as~~yd~~Dyi~d~~~f 126 (131)
T PF05523_consen 97 IKNFSEDSVLLVLASEPYDEEDYIRDYDEF 126 (131)
T ss_dssp EE---TT-EEEEEESS---GGGEE--HHHH
T ss_pred hhccCCCcEEEEEcCCCCChhhcccCHHHH
Confidence 999865 5566566667887654 444333
No 23
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=57.49 E-value=88 Score=24.46 Aligned_cols=72 Identities=21% Similarity=0.280 Sum_probs=50.1
Q ss_pred EeecCCCcccCCCCCCCeeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCCCce
Q 031405 4 FCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGGNM 83 (160)
Q Consensus 4 F~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~ggNl 83 (160)
..+.||..|.||=|-.=.=.--|+.|++.|+.=| . .. .+.++ + ++.-|. |-.
T Consensus 68 i~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~----~------------~~--------~~~~g-~-sv~Ip~--g~~ 119 (151)
T PF01050_consen 68 ITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDD----E------------EF--------TLKEG-D-SVYIPR--GAK 119 (151)
T ss_pred EEEcCCCccceeeecccccEEEEEeCeEEEEECC----E------------EE--------EEcCC-C-EEEECC--CCE
Confidence 4578999999999998888888888988877411 0 01 11111 1 222233 489
Q ss_pred eEEEec--CCeeEEEEeCCCCC
Q 031405 84 HCFTAV--TPCAVLDILTPPYN 103 (160)
Q Consensus 84 H~~~a~--~p~AflDiL~PPY~ 103 (160)
|++.|. +|--|+.|-+..|-
T Consensus 120 H~i~n~g~~~L~~IEVq~G~~l 141 (151)
T PF01050_consen 120 HRIENPGKTPLEIIEVQTGEYL 141 (151)
T ss_pred EEEECCCCcCcEEEEEecCCCC
Confidence 999997 48899999999984
No 24
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=54.78 E-value=43 Score=28.07 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=24.9
Q ss_pred CCcccCCCC-CCCeeEeeEeeeceEEEEee
Q 031405 9 SAVIPLHDH-PGMTVFSKVLYGSMHVKAYD 37 (160)
Q Consensus 9 g~~IPLHDH-P~M~vlsKvL~Gs~~v~Syd 37 (160)
++-+.=|+| +|--+.++||.|++.+.-||
T Consensus 21 ~~~~~~H~t~~g~~~~~~vl~G~l~~~~~d 50 (287)
T PRK12335 21 EMFQEKHNTKEGTWAKLTVLKGELKFYELT 50 (287)
T ss_pred HHHHhccCCCCCcceEEEEEeeeEEEEEEC
Confidence 334555999 89999999999999999997
No 25
>PRK11171 hypothetical protein; Provisional
Probab=53.92 E-value=21 Score=30.19 Aligned_cols=33 Identities=27% Similarity=0.205 Sum_probs=26.6
Q ss_pred eeEeecCCCcccCCCCCCCeeEeeEeeeceEEE
Q 031405 2 CIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVK 34 (160)
Q Consensus 2 ~iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~ 34 (160)
..|.|+||+.++.|=|-+|.=..=||.|++.++
T Consensus 187 ~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~ 219 (266)
T PRK11171 187 NIVTFEPGASIPFVETHVMEHGLYVLEGKGVYR 219 (266)
T ss_pred EEEEECCCCEEccCcCCCceEEEEEEeCEEEEE
Confidence 458899999999965666666777999999874
No 26
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=52.44 E-value=73 Score=22.59 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=36.5
Q ss_pred CCCeeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCCCceeEEEecCC
Q 031405 18 PGMTVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGGNMHCFTAVTP 91 (160)
Q Consensus 18 P~M~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~ggNlH~~~a~~p 91 (160)
.|-.+.++||.|+++..-++- .. . .+ ...++.+++++.++-|. -.|.+...++
T Consensus 23 ~GtWg~l~Vl~G~L~f~~~~~---~~----------~-~~----~~~~~~~~~~~~~i~Pq---~wH~V~p~s~ 75 (82)
T PF09313_consen 23 AGTWGKLRVLEGELKFYGLDE---EG----------E-EP----EEEVFIPAGQPPVIEPQ---QWHRVEPLSD 75 (82)
T ss_dssp TTEEEEEEEEESEEEEEEESS---TT------------SE----SEEEEEETTEEEEE-TT----EEEEEESST
T ss_pred CCeEEEEEEEeeEEEEEEECC---CC----------C-ce----eEEEEeCCCCCceeCCC---ceEEEEECCC
Confidence 466789999999999888872 10 0 01 22456677788888886 5799998876
No 27
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=45.90 E-value=24 Score=23.65 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=28.3
Q ss_pred eEeecCCCcccCCCCCCCeeEeeEeeeceEEEEe
Q 031405 3 IFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAY 36 (160)
Q Consensus 3 iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Sy 36 (160)
.|.|.+|..+.|+..-++. .+|..|.+=|+-.
T Consensus 1 ~~~L~~g~~~~lr~~~~~~--l~v~~G~vWlT~~ 32 (63)
T PF11142_consen 1 TFELAPGETLSLRAAAGQR--LRVESGRVWLTRE 32 (63)
T ss_pred CEEeCCCceEEeEcCCCcE--EEEccccEEEECC
Confidence 4899999999999999998 8999999887653
No 28
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=39.65 E-value=1.5e+02 Score=24.96 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=21.4
Q ss_pred eEeecCCCcccCCCCCC-CeeEeeEeeeceEEEEee
Q 031405 3 IFCFPTSAVIPLHDHPG-MTVFSKVLYGSMHVKAYD 37 (160)
Q Consensus 3 iF~l~~g~~IPLHDHP~-M~vlsKvL~Gs~~v~Syd 37 (160)
|..+++|.+-|.|-|+- |-=+..==-|++.++=|.
T Consensus 90 iM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~ 125 (225)
T COG3822 90 IMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWN 125 (225)
T ss_pred eEEeccCCcCcccccccchhhhhhcCCceEEEEEec
Confidence 56789999999999992 111111124555555554
No 29
>PLN00212 glutelin; Provisional
Probab=35.98 E-value=47 Score=31.06 Aligned_cols=34 Identities=9% Similarity=0.037 Sum_probs=30.5
Q ss_pred EeecCCCcccCCCCCCCeeEeeEeeeceEEEEee
Q 031405 4 FCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKAYD 37 (160)
Q Consensus 4 F~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~Syd 37 (160)
-.|.+|+.++-|-||+-+-+.-|+-|+++|.--+
T Consensus 353 v~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~ 386 (493)
T PLN00212 353 VNLYQNALLSPFWNVNAHSVVYITQGRARVQVVS 386 (493)
T ss_pred EEEcCCcccCCeecCCCCEEEEEeecceEEEEEc
Confidence 4578999999999999999999999999988543
No 30
>PRK11171 hypothetical protein; Provisional
Probab=29.61 E-value=3.4e+02 Score=22.79 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=25.9
Q ss_pred eeEeecCCCcccCCCCC-CCeeEeeEeeeceEEE
Q 031405 2 CIFCFPTSAVIPLHDHP-GMTVFSKVLYGSMHVK 34 (160)
Q Consensus 2 ~iF~l~~g~~IPLHDHP-~M~vlsKvL~Gs~~v~ 34 (160)
.+..|+||+....|-|+ +.--+.-||.|++.++
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~ 97 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLT 97 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEE
Confidence 35678899888777665 7677788999999986
No 31
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=29.17 E-value=3.4e+02 Score=22.71 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=56.0
Q ss_pred eeEeecCCCcccCCCCCCCee--EeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCC
Q 031405 2 CIFCFPTSAVIPLHDHPGMTV--FSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKS 79 (160)
Q Consensus 2 ~iF~l~~g~~IPLHDHP~M~v--lsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~ 79 (160)
+++.+.+|+.==||.||+--- |.-+|-|.....-++- . ..++.++. .-++.+.-|..
T Consensus 83 ~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~---~----------G~~~v~~~--------~~Gd~iyVPp~ 141 (209)
T COG2140 83 AEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKP---E----------GEARVIAV--------RAGDVIYVPPG 141 (209)
T ss_pred eEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcC---C----------CcEEEEEe--------cCCcEEEeCCC
Confidence 567899999999999999999 9999999998776651 1 12233322 22334445664
Q ss_pred CCceeEEEec--CCeeEEEEeCCCC
Q 031405 80 GGNMHCFTAV--TPCAVLDILTPPY 102 (160)
Q Consensus 80 ggNlH~~~a~--~p~AflDiL~PPY 102 (160)
=.|.+.+. +|--|+-+..+.-
T Consensus 142 --~gH~t~N~Gd~pLvf~~v~~~~~ 164 (209)
T COG2140 142 --YGHYTINTGDEPLVFLNVYPADA 164 (209)
T ss_pred --cceEeecCCCCCEEEEEEEeCCC
Confidence 57999987 4889999988763
No 32
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=27.51 E-value=68 Score=22.86 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=26.6
Q ss_pred eeEeecCCCcccCCCCCCCeeEeeEeeeceEEEE
Q 031405 2 CIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKA 35 (160)
Q Consensus 2 ~iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~S 35 (160)
|+..||+|+.=|+=+==.|+-..-|+.|.+.|+-
T Consensus 15 G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti 48 (85)
T PF11699_consen 15 GMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI 48 (85)
T ss_dssp EEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE
T ss_pred EEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE
Confidence 6778899998888888889999999999998764
No 33
>COG2957 Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]
Probab=27.38 E-value=34 Score=30.63 Aligned_cols=14 Identities=43% Similarity=1.049 Sum_probs=11.3
Q ss_pred CCCceeEEEecCCe
Q 031405 79 SGGNMHCFTAVTPC 92 (160)
Q Consensus 79 ~ggNlH~~~a~~p~ 92 (160)
.|||||||+..-|+
T Consensus 332 ggGs~HCiTqQ~p~ 345 (346)
T COG2957 332 GGGSLHCITQQIPA 345 (346)
T ss_pred cCCceEEEeecccC
Confidence 57899999976654
No 34
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=26.46 E-value=2.1e+02 Score=24.35 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=47.7
Q ss_pred eEeecCCCcccCCCCCCCe-e-EeeEeeeceEEEEeeccCCcccccCCCC---CCCCeEEeEEccceeeeCCCCceEEee
Q 031405 3 IFCFPTSAVIPLHDHPGMT-V-FSKVLYGSMHVKAYDWVEPARFQETKGP---GYRPVRLAKLATDKILTPQYGTSILYP 77 (160)
Q Consensus 3 iF~l~~g~~IPLHDHP~M~-v-lsKvL~Gs~~v~Syd~~~~~~~~~~~~~---~~~~~~~a~~~~d~v~~a~~~~~vL~P 77 (160)
+.++++|.+-|+|-|..=. = +-| =-|.+.|+-|.--..... +.+.. .....+..-..+..+.=+|.+...|.|
T Consensus 91 im~~~~~Q~tP~H~H~~K~EDIINR-GGG~L~i~l~~s~~~~~~-~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~P 168 (225)
T PF07385_consen 91 IMIVREGQVTPMHFHWKKMEDIINR-GGGNLVIELYNSDPDGEL-DADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPP 168 (225)
T ss_dssp EEEE-BT-EEEEEEESS--EEEEEE-EES-EEEEEEEB--TTSS-B-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-T
T ss_pred heeccCCCcCCcccCcchhhheeec-CCceEEEEEEeccCCCcc-ccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCC
Confidence 4567999999999997532 1 222 136888888874321111 00000 000011111123333333444555655
Q ss_pred CCCCceeEEEecC-CeeEEEEeCCCCCCCCCCcceeeeeC
Q 031405 78 KSGGNMHCFTAVT-PCAVLDILTPPYNEDAGRKCTYYVDY 116 (160)
Q Consensus 78 ~~ggNlH~~~a~~-p~AflDiL~PPY~~~~~R~C~YY~~~ 116 (160)
|..|.|-+.+ -+.+-.|=+-. ++..|=.|++++
T Consensus 169 ---g~yH~Fw~e~g~vLigEVStvN---DD~tDN~F~~pi 202 (225)
T PF07385_consen 169 ---GIYHWFWGEGGDVLIGEVSTVN---DDNTDNRFLEPI 202 (225)
T ss_dssp ---TEEEEEEE-TTSEEEEEEEE------TTTSEEESS--
T ss_pred ---CCeeeEEecCCCEEEEeeeccc---CCCccccccCCc
Confidence 5999999974 56666666654 445777777753
No 35
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=24.96 E-value=2e+02 Score=19.51 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=22.0
Q ss_pred CCCCCCCeeEeeEe-eeceEEEEeeccCCc
Q 031405 14 LHDHPGMTVFSKVL-YGSMHVKAYDWVEPA 42 (160)
Q Consensus 14 LHDHP~M~vlsKvL-~Gs~~v~Syd~~~~~ 42 (160)
++-+||+++..++- .|....++|+.+..+
T Consensus 28 ~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~ 57 (99)
T PF00970_consen 28 LDFKPGQFVSVRVPINGKQVSRPYSPASSP 57 (99)
T ss_dssp -SSTTT-EEEEEEEETTEEEEEEEEBCSST
T ss_pred cccCcceEEEEEEccCCcceecceeEeeec
Confidence 77899999999987 456778999987644
No 36
>PF01958 DUF108: Domain of unknown function DUF108; InterPro: IPR002811 This group contains aspartate dehydrogenases that belong to a unique class of amino acid dehydrogenases. The structure of Thermotoga maritima TM1643 has been found to contain an N-terminal Rossmann fold domain (which binds the NAD(+) cofactor) and a C-terminal alpha/beta domain []. This suggested that TM1643 may be a dehydrogenase with the active site located at the interface between the two domains. Enzymatic characterisation of TM1643 revealed that it possesses NAD or NADP-dependent dehydrogenase activity toward l-aspartate but no aspartate oxidase activity []. The product of the aspartate dehydrogenase activity is also iminoaspartate. It has been suggested that two different enzymes, an oxidase and a dehydrogenase, may have evolved to catalyse the first step of NAD biosynthesis []. Members of this group share some structural similarity to several other NAD(P)+-dependent oxidoreductases, including inositol 1-phosphate synthase, dihydrodipicolinate reductase, and ASA-DH []. It has been proposed that in Thermotoga maritima, TM1643 catalyses the first reaction of de novo biosynthesis of NAD from aspartate, and it produces iminoaspartate required for this pathway. The formation of an enzyme complex between TM1643 and NadA, the next enzyme of the pathway, may allow the channeling of this unstable product directly to the NadA active site []. The same domain is present in animals (e.g., Caenorhabditis elegans F17C8.3 protein).; GO: 0016491 oxidoreductase activity, 0006742 NADP catabolic process, 0019363 pyridine nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1J5P_A 1H2H_A 2DC1_A.
Probab=24.86 E-value=59 Score=23.70 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=14.4
Q ss_pred eCCCCceeEEEecCCeeEEEE
Q 031405 77 PKSGGNMHCFTAVTPCAVLDI 97 (160)
Q Consensus 77 P~~ggNlH~~~a~~p~AflDi 97 (160)
|.-.+|+|+|.+.+...++.+
T Consensus 49 P~~~~n~HeI~v~g~~g~~~~ 69 (92)
T PF01958_consen 49 PGADGNIHEIEVEGDFGFFVI 69 (92)
T ss_dssp TT-SSEEEEEEEEETTEEEEE
T ss_pred CCccCceEEEEEEecCEEEEE
Confidence 555679999999876554443
No 37
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=22.96 E-value=3.9e+02 Score=21.28 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=56.8
Q ss_pred cCCCcccCCCCCCC---eeEeeEeeeceEEEEeeccCCcccccCCCCCCCCeEEeEEccceeeeCCCCceEEeeCCCCce
Q 031405 7 PTSAVIPLHDHPGM---TVFSKVLYGSMHVKAYDWVEPARFQETKGPGYRPVRLAKLATDKILTPQYGTSILYPKSGGNM 83 (160)
Q Consensus 7 ~~g~~IPLHDHP~M---~vlsKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~~~~a~~~~d~v~~a~~~~~vL~P~~ggNl 83 (160)
.+|..==||=|..+ .=+.+|+.|++..-.+|.-..+.. ..+... .++++.....++-|. |--
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpT-------fg~~~~------~~Ls~~n~~~l~IP~--G~a 115 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPT-------FGKWVS------VELSAENPRQLYIPP--GVA 115 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTT-------TT-EEE------EEEETTT--EEEE-T--TEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCC-------CCEEEE------EEeCccccCEEEeCC--cce
Confidence 34666668877776 668899999999999997543221 122222 356666666777675 599
Q ss_pred eEEEecCC-eeEEEEeCCCCCCCCCCcceee
Q 031405 84 HCFTAVTP-CAVLDILTPPYNEDAGRKCTYY 113 (160)
Q Consensus 84 H~~~a~~p-~AflDiL~PPY~~~~~R~C~YY 113 (160)
|-|.+++. +.++=..+=+|+....+..+|-
T Consensus 116 HGf~~l~d~a~v~Y~~t~~y~p~~e~~i~~~ 146 (176)
T PF00908_consen 116 HGFQTLEDDAEVLYKVTNYYDPEDERGIRWN 146 (176)
T ss_dssp EEEEESSSEEEEEEEESS---GGGEEEB-TT
T ss_pred eeEEeccCceEEEEecCCccCcccceeECCC
Confidence 99999975 6677777888887654444433
No 38
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=21.36 E-value=1.1e+02 Score=25.76 Aligned_cols=33 Identities=18% Similarity=0.039 Sum_probs=27.1
Q ss_pred eeEeecCCCcccCCCCCCCeeEeeEeeeceEEEE
Q 031405 2 CIFCFPTSAVIPLHDHPGMTVFSKVLYGSMHVKA 35 (160)
Q Consensus 2 ~iF~l~~g~~IPLHDHP~M~vlsKvL~Gs~~v~S 35 (160)
.|+.-|+....|+|.|..+-+. -++.|++.+.-
T Consensus 29 ~~~~~~~~~m~~~HwH~e~Ei~-yv~~G~~~~~i 61 (302)
T PRK10371 29 EIEFRPPHIMPTSHWHGQVEVN-VPFDGDVEYLI 61 (302)
T ss_pred EEEeeCCCCCCCCCccccEEEE-EecCCcEEEEE
Confidence 5677788888999999999887 77899887654
No 39
>COG1531 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.61 E-value=47 Score=23.70 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=11.0
Q ss_pred eEeecCCCcccCC
Q 031405 3 IFCFPTSAVIPLH 15 (160)
Q Consensus 3 iF~l~~g~~IPLH 15 (160)
++++-.|+.||+|
T Consensus 47 ~~~~~~~~~IP~H 59 (77)
T COG1531 47 FYLLYQGTYIPYH 59 (77)
T ss_pred EEEEecCceeeeE
Confidence 4777889999998
No 40
>PF04621 ETS_PEA3_N: PEA3 subfamily ETS-domain transcription factor N terminal domain; InterPro: IPR006715 The N-terminal of the PEA3 transcription factors is implicated in transactivation and in inhibition of DNA binding []. Transactivation is potentiated by activation of the Ras/MAP kinase and protein kinase A signalling cascades. The N-terminal region contains conserved MAP kinase phosphorylation sites [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.14 E-value=33 Score=30.72 Aligned_cols=28 Identities=21% Similarity=0.567 Sum_probs=23.4
Q ss_pred ceeEEEEeCCC------CCeeeeCccCCCCeecC
Q 031405 133 EYAWLSEIDTP------DDLHMRPGVYAGPAIQV 160 (160)
Q Consensus 133 ~~~~L~ei~~P------~df~~~~~~Y~GP~i~~ 160 (160)
++.||.|...| .||..+++.|.||.++|
T Consensus 54 QE~Wlaeaqvpddeqfvpdf~senL~FHspp~KI 87 (341)
T PF04621_consen 54 QETWLAEAQVPDDEQFVPDFQSENLAFHSPPAKI 87 (341)
T ss_pred HHhhhccccCCchhhcCCCcCcccceeccccccc
Confidence 67899998877 46889999999998765
Done!