Query 031406
Match_columns 160
No_of_seqs 124 out of 1650
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 13:39:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11478 putative lyase; Provi 99.9 1E-21 2.2E-26 129.2 16.5 122 35-157 2-128 (129)
2 cd08353 Glo_EDI_BRP_like_7 Thi 99.9 8.2E-22 1.8E-26 131.8 15.8 121 37-158 1-141 (142)
3 PLN02367 lactoylglutathione ly 99.9 1.7E-21 3.6E-26 138.3 17.5 126 34-159 70-223 (233)
4 PLN03042 Lactoylglutathione ly 99.9 4.4E-21 9.5E-26 133.2 16.5 124 36-159 24-175 (185)
5 cd08352 Glo_EDI_BRP_like_1 Thi 99.9 8E-21 1.7E-25 123.7 15.4 119 38-157 2-125 (125)
6 TIGR03645 glyox_marine lactoyl 99.9 7.5E-21 1.6E-25 130.1 15.7 122 38-159 3-152 (162)
7 cd08342 HPPD_N_like N-terminal 99.9 4.2E-21 9.2E-26 127.7 14.0 118 40-159 1-124 (136)
8 cd07241 Glo_EDI_BRP_like_3 Thi 99.9 7.3E-21 1.6E-25 124.1 14.4 117 39-156 1-125 (125)
9 TIGR00068 glyox_I lactoylgluta 99.9 1.2E-20 2.6E-25 127.5 15.4 124 32-159 10-142 (150)
10 cd08364 FosX FosX, a fosfomyci 99.9 1.7E-20 3.6E-25 124.1 14.9 115 36-158 1-122 (131)
11 PRK04101 fosfomycin resistance 99.9 2E-20 4.4E-25 124.9 14.9 113 36-158 1-119 (139)
12 cd07233 Glyoxalase_I Glyoxalas 99.9 2.4E-20 5.2E-25 121.1 14.9 114 40-156 1-121 (121)
13 TIGR03081 metmalonyl_epim meth 99.9 8.9E-21 1.9E-25 124.3 12.3 119 39-157 1-128 (128)
14 cd07253 Glo_EDI_BRP_like_2 Thi 99.9 4.3E-20 9.4E-25 120.2 15.3 117 37-158 1-125 (125)
15 PLN02300 lactoylglutathione ly 99.9 2.3E-20 4.9E-25 138.5 15.1 123 33-159 18-149 (286)
16 cd07245 Glo_EDI_BRP_like_9 Thi 99.9 2.4E-20 5.3E-25 119.2 13.3 110 40-155 1-114 (114)
17 cd07243 2_3_CTD_C C-terminal d 99.9 6.7E-20 1.5E-24 123.0 14.7 113 36-157 3-124 (143)
18 PRK10291 glyoxalase I; Provisi 99.8 4E-20 8.7E-25 121.8 13.0 111 44-158 1-120 (129)
19 cd08347 PcpA_C_like C-terminal 99.8 1.1E-19 2.3E-24 123.8 14.8 113 39-159 1-121 (157)
20 cd08355 Glo_EDI_BRP_like_14 Th 99.8 3.8E-19 8.3E-24 115.9 16.3 116 43-158 3-122 (122)
21 cd08363 FosB FosB, a fosfomyci 99.8 1.1E-19 2.5E-24 120.1 13.4 110 40-159 1-116 (131)
22 cd07247 SgaA_N_like N-terminal 99.8 3E-19 6.5E-24 114.9 15.1 109 40-157 1-114 (114)
23 cd08351 ChaP_like ChaP, an enz 99.8 2.4E-19 5.1E-24 117.2 14.6 107 37-159 2-122 (123)
24 cd07242 Glo_EDI_BRP_like_6 Thi 99.8 3.4E-19 7.4E-24 116.9 15.4 114 39-158 1-128 (128)
25 cd07263 Glo_EDI_BRP_like_16 Th 99.8 3.5E-19 7.5E-24 114.9 14.7 113 42-157 1-119 (119)
26 cd09014 BphC-JF8_C_like C-term 99.8 3.3E-19 7.2E-24 122.5 15.1 118 35-158 2-127 (166)
27 cd08361 PpCmtC_N N-terminal do 99.8 4.7E-19 1E-23 116.1 15.1 109 35-159 2-120 (124)
28 cd09011 Glo_EDI_BRP_like_23 Th 99.8 3.3E-19 7.2E-24 116.0 13.8 113 39-158 2-119 (120)
29 cd07252 BphC1-RGP6_N_like N-te 99.8 5.1E-19 1.1E-23 115.2 14.4 107 39-159 2-118 (120)
30 cd07244 FosA FosA, a Fosfomyci 99.8 3.7E-19 7.9E-24 116.0 13.4 107 39-158 1-110 (121)
31 cd07249 MMCE Methylmalonyl-CoA 99.8 3.3E-19 7.2E-24 116.6 13.0 118 40-157 1-128 (128)
32 cd07246 Glo_EDI_BRP_like_8 Thi 99.8 1.6E-18 3.5E-23 112.6 15.9 113 43-157 5-121 (122)
33 cd07264 Glo_EDI_BRP_like_15 Th 99.8 9.1E-19 2E-23 114.3 14.8 115 40-158 1-125 (125)
34 cd07267 THT_Oxygenase_N N-term 99.8 9.3E-19 2E-23 112.8 14.4 106 37-157 1-109 (113)
35 cd07265 2_3_CTD_N N-terminal d 99.8 9.5E-19 2.1E-23 114.1 14.3 108 37-158 2-119 (122)
36 cd07257 THT_oxygenase_C The C- 99.8 2.1E-19 4.5E-24 121.9 11.5 113 39-157 1-124 (153)
37 cd08346 PcpA_N_like N-terminal 99.8 5.8E-19 1.3E-23 115.1 13.1 116 39-156 1-126 (126)
38 cd07255 Glo_EDI_BRP_like_12 Th 99.8 2.8E-18 6.1E-23 112.1 16.0 112 38-158 1-119 (125)
39 cd08345 Fosfomycin_RP Fosfomyc 99.8 8.4E-19 1.8E-23 112.6 12.7 105 42-158 1-111 (113)
40 PRK06724 hypothetical protein; 99.8 2.1E-18 4.5E-23 113.6 14.3 108 36-159 4-124 (128)
41 cd08359 Glo_EDI_BRP_like_22 Th 99.8 2.8E-18 6E-23 111.2 14.7 109 42-157 4-119 (119)
42 cd08348 BphC2-C3-RGP6_C_like T 99.8 4.4E-18 9.6E-23 112.6 15.6 113 39-159 1-121 (134)
43 PF00903 Glyoxalase: Glyoxalas 99.8 9.9E-20 2.1E-24 118.8 7.6 117 39-155 1-128 (128)
44 cd07240 ED_TypeI_classII_N N-t 99.8 2.5E-18 5.4E-23 110.9 13.9 107 38-159 1-115 (117)
45 cd09013 BphC-JF8_N_like N-term 99.8 2.5E-18 5.5E-23 111.9 13.9 110 35-158 2-118 (121)
46 cd08362 BphC5-RrK37_N_like N-t 99.8 2.3E-18 5.1E-23 111.7 13.6 107 38-158 2-117 (120)
47 cd08360 MhqB_like_C C-terminal 99.8 3E-18 6.5E-23 113.7 14.4 106 38-157 2-119 (134)
48 cd07237 BphC1-RGP6_C_like C-te 99.8 3.2E-18 6.9E-23 116.2 13.8 112 37-158 7-131 (154)
49 cd08358 Glo_EDI_BRP_like_21 Th 99.8 5E-18 1.1E-22 111.2 14.2 110 39-157 2-126 (127)
50 cd07256 HPCD_C_class_II C-term 99.8 4.9E-18 1.1E-22 116.1 14.8 112 38-158 2-123 (161)
51 cd08350 BLMT_like BLMT, a bleo 99.8 5.7E-18 1.2E-22 110.1 13.6 104 42-158 5-119 (120)
52 cd07239 BphC5-RK37_C_like C-te 99.8 6.2E-18 1.3E-22 113.6 13.8 106 38-159 3-118 (144)
53 cd08354 Glo_EDI_BRP_like_13 Th 99.8 1.3E-17 2.7E-22 108.4 14.2 114 40-158 1-122 (122)
54 cd08343 ED_TypeI_classII_C C-t 99.8 1.4E-17 3.1E-22 109.9 14.6 107 41-158 1-117 (131)
55 cd07266 HPCD_N_class_II N-term 99.8 9.5E-18 2.1E-22 109.1 13.3 107 37-158 2-118 (121)
56 cd07235 MRD Mitomycin C resist 99.8 1.2E-17 2.7E-22 108.7 13.8 112 40-156 1-121 (122)
57 cd08349 BLMA_like Bleomycin bi 99.8 2E-17 4.3E-22 105.8 14.3 105 44-157 3-112 (112)
58 cd09012 Glo_EDI_BRP_like_24 Th 99.8 1.4E-17 3E-22 108.9 13.1 112 41-157 2-123 (124)
59 cd08356 Glo_EDI_BRP_like_17 Th 99.8 1.2E-17 2.6E-22 107.7 12.5 100 43-157 5-113 (113)
60 PF12681 Glyoxalase_2: Glyoxal 99.8 2E-17 4.3E-22 105.3 13.0 100 45-156 1-108 (108)
61 cd08357 Glo_EDI_BRP_like_18 Th 99.8 2E-17 4.4E-22 107.8 13.2 111 42-158 2-125 (125)
62 cd06587 Glo_EDI_BRP_like This 99.8 2.8E-17 6.1E-22 104.0 13.1 108 42-155 1-112 (112)
63 cd07238 Glo_EDI_BRP_like_5 Thi 99.8 5.8E-17 1.3E-21 104.0 14.3 102 42-158 3-111 (112)
64 cd07261 Glo_EDI_BRP_like_11 Th 99.8 5.9E-17 1.3E-21 104.2 14.3 106 43-157 2-114 (114)
65 cd07254 Glo_EDI_BRP_like_20 Th 99.8 8.6E-17 1.9E-21 104.4 15.1 107 41-159 3-118 (120)
66 cd07258 PpCmtC_C C-terminal do 99.8 2.9E-17 6.2E-22 109.9 12.2 104 41-157 1-113 (141)
67 cd07262 Glo_EDI_BRP_like_19 Th 99.8 8.7E-17 1.9E-21 104.8 13.8 107 40-156 1-122 (123)
68 TIGR03211 catechol_2_3 catecho 99.8 5.5E-17 1.2E-21 121.3 14.5 114 33-156 139-263 (303)
69 cd08344 MhqB_like_N N-terminal 99.7 1.4E-16 3.1E-21 102.4 13.8 101 39-158 2-109 (112)
70 cd07251 Glo_EDI_BRP_like_10 Th 99.7 1.7E-16 3.6E-21 102.9 13.1 110 43-157 2-120 (121)
71 TIGR03213 23dbph12diox 2,3-dih 99.7 1.8E-16 3.8E-21 117.7 13.9 107 37-157 1-117 (286)
72 TIGR02295 HpaD 3,4-dihydroxyph 99.7 3.3E-16 7.2E-21 116.5 14.2 113 35-158 132-256 (294)
73 TIGR03213 23dbph12diox 2,3-dih 99.7 6.1E-16 1.3E-20 114.8 14.7 113 37-157 140-262 (286)
74 TIGR02295 HpaD 3,4-dihydroxyph 99.7 8.9E-16 1.9E-20 114.2 14.1 107 37-158 2-115 (294)
75 PLN02300 lactoylglutathione ly 99.7 1.2E-15 2.5E-20 113.3 14.2 120 36-159 151-279 (286)
76 PF13669 Glyoxalase_4: Glyoxal 99.7 2.9E-16 6.3E-21 100.6 8.5 94 41-136 1-96 (109)
77 TIGR03211 catechol_2_3 catecho 99.7 2E-15 4.4E-20 112.8 14.2 107 37-158 2-118 (303)
78 COG3324 Predicted enzyme relat 99.7 7.1E-15 1.5E-19 95.2 13.0 115 36-159 6-126 (127)
79 KOG2944 Glyoxalase [Carbohydra 99.6 8.5E-15 1.8E-19 96.5 12.4 119 39-158 42-168 (170)
80 COG3565 Predicted dioxygenase 99.6 1.1E-13 2.4E-18 86.5 11.3 112 39-158 4-129 (138)
81 COG2514 Predicted ring-cleavag 99.5 4.1E-13 8.8E-18 96.2 13.5 113 37-158 8-126 (265)
82 COG3607 Predicted lactoylgluta 99.5 6.2E-13 1.3E-17 84.4 10.4 118 39-160 3-129 (133)
83 cd07250 HPPD_C_like C-terminal 99.5 6.7E-13 1.5E-17 93.1 9.4 99 38-136 2-111 (191)
84 cd06588 PhnB_like Escherichia 99.4 1.5E-11 3.3E-16 80.8 14.2 108 43-156 3-128 (128)
85 COG2764 PhnB Uncharacterized p 99.4 1.2E-10 2.5E-15 76.7 14.8 114 43-159 4-132 (136)
86 TIGR01263 4HPPD 4-hydroxypheny 99.3 1E-10 2.2E-15 89.4 14.0 97 39-136 2-100 (353)
87 TIGR01263 4HPPD 4-hydroxypheny 99.3 4.3E-11 9.3E-16 91.4 10.7 104 34-137 153-267 (353)
88 COG0346 GloA Lactoylglutathion 99.3 2.4E-11 5.2E-16 78.9 7.1 119 39-157 2-138 (138)
89 KOG2943 Predicted glyoxalase [ 99.3 5.5E-11 1.2E-15 83.7 8.9 119 36-158 14-143 (299)
90 PRK01037 trmD tRNA (guanine-N( 99.1 5.3E-10 1.2E-14 83.5 10.4 104 38-157 246-353 (357)
91 PLN02875 4-hydroxyphenylpyruva 99.1 3.4E-10 7.4E-15 86.9 9.0 100 36-135 177-293 (398)
92 PF13468 Glyoxalase_3: Glyoxal 99.0 9.7E-10 2.1E-14 76.1 7.2 93 40-132 1-101 (175)
93 KOG2943 Predicted glyoxalase [ 99.0 1.8E-09 3.8E-14 76.2 7.8 122 25-157 136-269 (299)
94 COG2514 Predicted ring-cleavag 98.9 3.6E-08 7.7E-13 71.1 9.9 98 37-156 166-264 (265)
95 PRK10148 hypothetical protein; 98.8 1.4E-06 3E-11 58.6 15.1 109 43-158 5-141 (147)
96 KOG0638 4-hydroxyphenylpyruvat 98.7 7.2E-08 1.6E-12 70.8 8.0 103 35-137 13-120 (381)
97 PF14506 CppA_N: CppA N-termin 98.7 2.3E-06 5.1E-11 54.4 13.0 110 41-159 2-115 (125)
98 PLN02875 4-hydroxyphenylpyruva 98.6 1.1E-06 2.4E-11 67.8 12.7 118 40-157 1-150 (398)
99 PF14696 Glyoxalase_5: Hydroxy 98.6 3.7E-07 7.9E-12 60.5 7.2 119 34-157 4-125 (139)
100 COG3185 4-hydroxyphenylpyruvat 98.4 4.7E-07 1E-11 67.6 5.1 103 34-136 162-273 (363)
101 PF06983 3-dmu-9_3-mt: 3-demet 97.7 0.0016 3.6E-08 41.9 11.0 96 48-156 11-116 (116)
102 COG3185 4-hydroxyphenylpyruvat 97.7 0.001 2.2E-08 50.2 11.1 111 34-150 17-142 (363)
103 KOG0638 4-hydroxyphenylpyruvat 97.4 0.00013 2.9E-09 54.0 3.3 103 35-137 174-291 (381)
104 PF15067 FAM124: FAM124 family 97.2 0.0061 1.3E-07 43.5 9.5 101 39-155 128-235 (236)
105 PF14507 CppA_C: CppA C-termin 96.9 0.0035 7.6E-08 39.1 5.4 91 39-153 5-98 (101)
106 PF13669 Glyoxalase_4: Glyoxal 96.6 0.014 3.1E-07 36.8 6.5 50 110-159 1-56 (109)
107 KOG2944 Glyoxalase [Carbohydra 96.2 0.033 7.2E-07 37.5 6.6 54 38-93 114-168 (170)
108 cd08353 Glo_EDI_BRP_like_7 Thi 95.6 0.072 1.6E-06 34.9 6.5 54 38-92 86-140 (142)
109 cd08342 HPPD_N_like N-terminal 94.7 0.34 7.3E-06 31.7 7.6 59 38-97 68-127 (136)
110 PLN02367 lactoylglutathione ly 94.6 0.27 5.8E-06 35.7 7.3 57 38-96 168-225 (233)
111 PF13670 PepSY_2: Peptidase pr 94.1 0.27 5.8E-06 29.5 5.6 40 118-157 30-72 (83)
112 PRK11478 putative lyase; Provi 94.0 0.51 1.1E-05 30.1 7.4 54 38-92 74-128 (129)
113 cd07249 MMCE Methylmalonyl-CoA 93.9 0.36 7.9E-06 30.6 6.5 30 38-68 71-100 (128)
114 cd08352 Glo_EDI_BRP_like_1 Thi 93.7 0.73 1.6E-05 28.9 7.5 50 108-157 3-57 (125)
115 cd08347 PcpA_C_like C-terminal 93.5 0.55 1.2E-05 31.7 6.9 50 109-158 2-53 (157)
116 TIGR03645 glyox_marine lactoyl 93.1 0.76 1.6E-05 31.1 7.2 52 108-159 4-78 (162)
117 cd07242 Glo_EDI_BRP_like_6 Thi 92.5 0.82 1.8E-05 29.1 6.5 50 109-159 2-55 (128)
118 PLN03042 Lactoylglutathione ly 92.3 1.2 2.6E-05 31.1 7.4 56 38-95 120-176 (185)
119 cd06587 Glo_EDI_BRP_like This 92.2 0.83 1.8E-05 27.5 6.0 48 111-159 1-51 (112)
120 cd08346 PcpA_N_like N-terminal 92.1 1.4 2.9E-05 27.7 7.1 50 109-158 2-60 (126)
121 cd07245 Glo_EDI_BRP_like_9 Thi 92.0 0.86 1.9E-05 27.8 6.0 50 109-158 1-52 (114)
122 COG3865 Uncharacterized protei 92.0 2.6 5.6E-05 28.2 12.0 107 39-156 5-122 (151)
123 cd07235 MRD Mitomycin C resist 92.0 0.94 2E-05 28.6 6.2 46 110-155 2-47 (122)
124 PRK10291 glyoxalase I; Provisi 91.6 2.1 4.7E-05 27.4 7.7 57 38-95 64-122 (129)
125 cd08348 BphC2-C3-RGP6_C_like T 91.5 1.9 4.1E-05 27.7 7.4 50 109-158 2-54 (134)
126 cd07255 Glo_EDI_BRP_like_12 Th 91.1 1.9 4.1E-05 27.2 7.0 48 109-158 3-52 (125)
127 cd07241 Glo_EDI_BRP_like_3 Thi 90.5 2.7 5.9E-05 26.3 7.4 50 109-158 2-56 (125)
128 PF12681 Glyoxalase_2: Glyoxal 89.9 1.6 3.4E-05 26.7 5.7 52 38-90 55-107 (108)
129 cd07252 BphC1-RGP6_N_like N-te 89.8 2.8 6E-05 26.5 6.9 47 109-156 3-51 (120)
130 TIGR03081 metmalonyl_epim meth 89.4 1.8 4E-05 27.3 5.9 29 38-67 71-99 (128)
131 cd07263 Glo_EDI_BRP_like_16 Th 89.0 2.3 5E-05 26.2 6.1 30 38-68 66-95 (119)
132 cd08359 Glo_EDI_BRP_like_22 Th 89.0 3.1 6.7E-05 26.0 6.6 49 42-91 69-118 (119)
133 cd07233 Glyoxalase_I Glyoxalas 88.1 3.4 7.4E-05 25.7 6.4 29 39-68 70-98 (121)
134 cd07262 Glo_EDI_BRP_like_19 Th 87.9 3.6 7.7E-05 25.9 6.5 47 110-157 2-53 (123)
135 TIGR00068 glyox_I lactoylgluta 87.6 3.2 7E-05 27.4 6.3 56 38-94 85-142 (150)
136 cd07253 Glo_EDI_BRP_like_2 Thi 87.3 4 8.6E-05 25.4 6.4 30 108-137 3-33 (125)
137 cd08344 MhqB_like_N N-terminal 86.7 4.1 8.8E-05 25.3 6.1 28 109-136 3-30 (112)
138 PF06185 YecM: YecM protein; 86.5 9.1 0.0002 26.8 8.0 77 38-117 33-114 (185)
139 cd07238 Glo_EDI_BRP_like_5 Thi 86.4 5.7 0.00012 24.5 7.2 52 40-92 58-110 (112)
140 cd07240 ED_TypeI_classII_N N-t 86.4 4.9 0.00011 24.8 6.4 38 109-148 3-41 (117)
141 cd07250 HPPD_C_like C-terminal 86.2 3.7 8.1E-05 28.7 6.2 51 109-159 4-64 (191)
142 PF00903 Glyoxalase: Glyoxalas 85.5 4.7 0.0001 25.1 6.1 49 109-157 2-56 (128)
143 cd08360 MhqB_like_C C-terminal 83.9 6.7 0.00015 25.3 6.3 56 38-93 61-120 (134)
144 PRK04101 fosfomycin resistance 82.6 10 0.00022 24.7 6.8 55 39-94 63-120 (139)
145 cd08363 FosB FosB, a fosfomyci 82.5 9.1 0.0002 24.6 6.5 28 109-136 1-29 (131)
146 cd07247 SgaA_N_like N-terminal 82.3 9.2 0.0002 23.5 7.2 29 39-68 61-89 (114)
147 cd07264 Glo_EDI_BRP_like_15 Th 81.6 10 0.00023 23.6 6.8 26 41-67 73-98 (125)
148 cd09012 Glo_EDI_BRP_like_24 Th 81.6 9.6 0.00021 24.0 6.3 26 110-135 2-27 (124)
149 cd07257 THT_oxygenase_C The C- 80.6 14 0.00031 24.5 7.2 56 38-93 66-125 (153)
150 cd07237 BphC1-RGP6_C_like C-te 80.3 15 0.00032 24.5 7.3 51 107-157 8-67 (154)
151 cd08345 Fosfomycin_RP Fosfomyc 79.7 9 0.0002 23.5 5.6 53 39-92 55-110 (113)
152 cd07265 2_3_CTD_N N-terminal d 79.4 13 0.00028 23.3 6.6 29 109-137 5-34 (122)
153 cd07239 BphC5-RK37_C_like C-te 79.2 12 0.00026 24.6 6.3 28 108-135 4-32 (144)
154 PF13468 Glyoxalase_3: Glyoxal 79.1 17 0.00038 24.7 7.8 91 37-128 75-173 (175)
155 cd07266 HPCD_N_class_II N-term 78.8 13 0.00028 23.1 6.5 30 108-137 4-34 (121)
156 cd08361 PpCmtC_N N-terminal do 78.7 14 0.0003 23.4 6.6 46 109-156 7-54 (124)
157 cd07267 THT_Oxygenase_N N-term 77.6 14 0.00031 22.9 6.8 54 38-93 56-110 (113)
158 cd08364 FosX FosX, a fosfomyci 77.2 16 0.00036 23.4 6.6 28 39-67 66-95 (131)
159 cd07246 Glo_EDI_BRP_like_8 Thi 76.7 15 0.00032 22.7 6.8 52 39-91 68-120 (122)
160 cd08349 BLMA_like Bleomycin bi 75.6 15 0.00033 22.2 6.4 25 39-64 58-82 (112)
161 cd09011 Glo_EDI_BRP_like_23 Th 75.0 17 0.00038 22.6 6.6 53 39-92 64-118 (120)
162 cd08343 ED_TypeI_classII_C C-t 74.3 18 0.00039 23.1 6.0 48 110-157 1-53 (131)
163 cd04882 ACT_Bt0572_2 C-termina 74.0 10 0.00022 20.8 4.2 25 109-133 40-64 (65)
164 cd08362 BphC5-RrK37_N_like N-t 73.8 18 0.0004 22.3 6.0 29 108-136 3-32 (120)
165 cd08351 ChaP_like ChaP, an enz 73.4 20 0.00043 22.5 6.7 47 109-157 5-52 (123)
166 cd08358 Glo_EDI_BRP_like_21 Th 73.1 23 0.00049 23.1 7.6 27 109-135 3-30 (127)
167 cd09013 BphC-JF8_N_like N-term 72.5 20 0.00042 22.4 5.8 54 38-92 61-117 (121)
168 cd04895 ACT_ACR_1 ACT domain-c 71.9 8 0.00017 22.6 3.4 35 119-153 15-55 (72)
169 cd07251 Glo_EDI_BRP_like_10 Th 71.8 21 0.00044 22.0 5.9 44 112-157 2-46 (121)
170 cd07268 Glo_EDI_BRP_like_4 Thi 71.0 29 0.00063 23.4 10.5 75 40-117 2-81 (149)
171 PRK11700 hypothetical protein; 70.0 35 0.00076 24.0 9.3 77 38-117 38-119 (187)
172 cd07243 2_3_CTD_C C-terminal d 69.5 29 0.00062 22.8 6.6 56 38-93 66-125 (143)
173 cd04883 ACT_AcuB C-terminal AC 65.9 22 0.00047 20.0 4.5 27 110-136 43-71 (72)
174 cd08355 Glo_EDI_BRP_like_14 Th 65.7 30 0.00065 21.5 7.2 52 39-91 68-120 (122)
175 cd07258 PpCmtC_C C-terminal do 65.1 36 0.00079 22.3 6.9 58 37-94 54-115 (141)
176 cd08350 BLMT_like BLMT, a bleo 62.5 35 0.00076 21.2 6.4 24 41-65 60-83 (120)
177 cd07244 FosA FosA, a Fosfomyci 60.1 40 0.00086 21.0 6.5 28 109-136 2-30 (121)
178 PRK06724 hypothetical protein; 59.9 44 0.00095 21.5 6.7 54 39-93 63-123 (128)
179 PF07063 DUF1338: Domain of un 59.7 12 0.00026 28.4 3.2 30 105-134 181-216 (302)
180 cd04906 ACT_ThrD-I_1 First of 59.6 25 0.00054 20.9 4.1 27 110-136 42-72 (85)
181 PF09142 TruB_C: tRNA Pseudour 58.7 25 0.00054 19.4 3.6 41 118-159 5-45 (56)
182 cd04897 ACT_ACR_3 ACT domain-c 57.1 24 0.00052 20.8 3.5 35 119-153 15-55 (75)
183 cd07268 Glo_EDI_BRP_like_4 Thi 56.7 55 0.0012 22.1 5.5 50 109-158 2-60 (149)
184 cd07256 HPCD_C_class_II C-term 53.6 27 0.00058 23.4 3.9 28 108-135 3-31 (161)
185 cd08354 Glo_EDI_BRP_like_13 Th 53.3 51 0.0011 20.2 7.4 47 110-157 2-49 (122)
186 cd04908 ACT_Bt0572_1 N-termina 52.4 39 0.00084 18.8 3.9 24 111-134 42-65 (66)
187 PRK06704 RNA polymerase factor 52.0 10 0.00023 27.4 1.7 43 112-156 182-226 (228)
188 cd07261 Glo_EDI_BRP_like_11 Th 50.9 55 0.0012 19.9 6.3 28 39-67 59-89 (114)
189 KOG4657 Uncharacterized conser 49.9 15 0.00033 26.5 2.2 21 48-68 145-165 (246)
190 PF13420 Acetyltransf_4: Acety 49.5 70 0.0015 20.7 5.7 32 38-70 109-141 (155)
191 PRK11700 hypothetical protein; 49.4 78 0.0017 22.3 5.6 50 109-158 40-98 (187)
192 PF02208 Sorb: Sorbin homologo 48.4 7.8 0.00017 20.4 0.4 24 39-62 11-34 (47)
193 PF08445 FR47: FR47-like prote 46.9 47 0.001 19.8 3.8 24 44-68 59-82 (86)
194 PF13176 TPR_7: Tetratricopept 46.3 19 0.00041 17.4 1.7 19 46-64 11-29 (36)
195 cd04885 ACT_ThrD-I Tandem C-te 45.0 37 0.00081 19.0 3.1 26 109-134 39-67 (68)
196 PF00583 Acetyltransf_1: Acety 44.7 33 0.00072 19.4 2.9 25 39-64 58-83 (83)
197 PRK10562 putative acetyltransf 42.1 87 0.0019 20.2 5.0 27 42-69 99-126 (145)
198 PRK09437 bcp thioredoxin-depen 40.8 1E+02 0.0022 20.2 6.0 17 141-157 121-137 (154)
199 PF06185 YecM: YecM protein; 40.5 43 0.00093 23.5 3.2 49 109-157 35-92 (185)
200 PRK10140 putative acetyltransf 39.5 54 0.0012 21.4 3.7 30 39-69 112-142 (162)
201 COG1437 CyaB Adenylate cyclase 39.2 1.3E+02 0.0029 21.0 9.3 78 40-133 78-162 (178)
202 PF06923 GutM: Glucitol operon 39.2 1E+02 0.0022 19.6 5.3 42 117-159 24-71 (109)
203 PF07494 Reg_prop: Two compone 38.6 40 0.00086 14.8 2.1 12 142-153 8-19 (24)
204 cd04909 ACT_PDH-BS C-terminal 37.7 40 0.00087 18.7 2.4 22 112-133 45-69 (69)
205 PF14907 NTP_transf_5: Unchara 37.6 1.3E+02 0.0029 21.4 5.7 47 110-157 95-143 (249)
206 PF10706 Aminoglyc_resit: Amin 37.6 1.2E+02 0.0026 21.0 4.9 41 111-154 46-86 (174)
207 COG0456 RimI Acetyltransferase 37.5 55 0.0012 21.7 3.5 29 41-70 127-156 (177)
208 PF07566 DUF1543: Domain of Un 37.5 37 0.0008 18.4 2.1 47 109-155 5-52 (52)
209 PTZ00330 acetyltransferase; Pr 37.4 52 0.0011 21.1 3.3 26 39-67 115-140 (147)
210 cd07254 Glo_EDI_BRP_like_20 Th 37.4 99 0.0021 19.0 7.5 56 38-93 57-117 (120)
211 COG3603 Uncharacterized conser 37.2 43 0.00093 21.7 2.6 25 110-134 103-127 (128)
212 COG3324 Predicted enzyme relat 36.6 1.2E+02 0.0027 19.8 6.3 55 39-93 71-125 (127)
213 KOG1494 NAD-dependent malate d 36.3 76 0.0016 24.2 4.1 76 43-137 171-246 (345)
214 TIGR03585 PseH pseudaminic aci 34.9 1.3E+02 0.0027 19.5 5.7 30 39-69 109-139 (156)
215 PF03975 CheD: CheD chemotacti 33.5 86 0.0019 19.9 3.7 37 117-153 64-103 (114)
216 PF00379 Chitin_bind_4: Insect 33.3 65 0.0014 17.1 2.7 16 142-157 30-45 (52)
217 PF14133 DUF4300: Domain of un 33.2 97 0.0021 22.9 4.3 36 119-154 150-185 (250)
218 COG4747 ACT domain-containing 32.3 1.5E+02 0.0032 19.4 9.0 87 39-136 41-136 (142)
219 COG4009 Uncharacterized protei 31.7 1.1E+02 0.0024 18.3 3.5 27 110-136 51-79 (88)
220 COG3254 Uncharacterized conser 31.7 1.4E+02 0.003 18.9 4.7 32 121-159 28-59 (105)
221 PF10922 DUF2745: Protein of u 31.2 1.2E+02 0.0026 18.3 3.7 37 118-154 11-54 (85)
222 PHA02097 hypothetical protein 31.1 57 0.0012 17.6 2.1 14 144-157 45-58 (59)
223 TIGR02382 wecD_rffC TDP-D-fuco 31.1 59 0.0013 22.4 2.9 28 39-67 156-184 (191)
224 PF02952 Fucose_iso_C: L-fucos 31.0 77 0.0017 20.7 3.3 27 40-66 113-139 (142)
225 PRK13490 chemoreceptor glutami 30.9 1.1E+02 0.0024 20.9 4.0 36 117-152 112-150 (162)
226 PRK10146 aminoalkylphosphonic 30.9 58 0.0012 20.8 2.7 27 39-66 109-136 (144)
227 PF02630 SCO1-SenC: SCO1/SenC; 30.7 49 0.0011 22.7 2.3 20 140-159 155-174 (174)
228 PRK13498 chemoreceptor glutami 30.7 1.1E+02 0.0025 21.0 4.1 36 117-152 115-153 (167)
229 COG3102 Uncharacterized protei 30.2 1.9E+02 0.0042 20.1 7.9 83 38-125 38-128 (185)
230 PF07411 DUF1508: Domain of un 30.1 93 0.002 16.5 3.1 18 138-155 3-20 (49)
231 PF11141 DUF2914: Protein of u 30.0 1.1E+02 0.0024 17.3 3.6 22 137-158 42-63 (66)
232 PRK13495 chemoreceptor glutami 29.7 1.2E+02 0.0027 20.7 4.1 36 117-152 105-143 (159)
233 cd04886 ACT_ThrD-II-like C-ter 29.1 1E+02 0.0022 16.6 4.4 25 110-134 45-72 (73)
234 PRK10975 TDP-fucosamine acetyl 28.7 91 0.002 21.4 3.5 29 38-67 158-187 (194)
235 PF08379 Bact_transglu_N: Bact 28.3 1.3E+02 0.0028 17.5 4.4 23 137-159 44-66 (82)
236 smart00671 SEL1 Sel1-like repe 28.3 60 0.0013 15.0 1.9 14 47-60 18-31 (36)
237 PRK13494 chemoreceptor glutami 27.9 1.4E+02 0.003 20.5 4.1 36 117-152 114-152 (163)
238 COG1724 Predicted RNA binding 27.6 1.3E+02 0.0028 17.3 4.9 36 118-155 8-43 (66)
239 PF07063 DUF1338: Domain of un 27.2 72 0.0016 24.3 2.9 28 38-66 183-216 (302)
240 PF13508 Acetyltransf_7: Acety 26.8 52 0.0011 18.7 1.7 20 43-65 60-79 (79)
241 PF12142 PPO1_DWL: Polyphenol 26.5 89 0.0019 17.2 2.4 17 141-157 10-26 (54)
242 PF00578 AhpC-TSA: AhpC/TSA fa 26.4 1.3E+02 0.0028 18.5 3.7 45 109-153 60-122 (124)
243 PRK09732 hypothetical protein; 26.4 2E+02 0.0043 19.0 5.3 32 120-159 17-48 (134)
244 PRK15130 spermidine N1-acetylt 26.3 2.1E+02 0.0045 19.3 5.7 30 39-69 116-146 (186)
245 COG3042 Hlx Putative hemolysin 26.2 1.6E+02 0.0034 17.9 3.6 36 120-155 37-74 (85)
246 PRK03094 hypothetical protein; 26.0 1.6E+02 0.0034 17.7 5.1 38 118-155 9-51 (80)
247 PHA02540 61 DNA primase; Provi 25.8 1.5E+02 0.0032 23.1 4.3 42 114-156 148-189 (337)
248 PF05593 RHS_repeat: RHS Repea 25.5 97 0.0021 15.2 3.6 23 137-159 13-35 (38)
249 COG1490 Dtd D-Tyr-tRNAtyr deac 25.1 1.3E+02 0.0029 20.1 3.4 50 109-158 28-79 (145)
250 PHA02754 hypothetical protein; 25.1 1.4E+02 0.003 16.7 4.2 40 119-158 20-62 (67)
251 PRK13497 chemoreceptor glutami 25.0 1.7E+02 0.0036 20.6 4.2 37 117-153 112-151 (184)
252 TIGR01643 YD_repeat_2x YD repe 24.8 1E+02 0.0022 15.1 3.8 22 137-158 13-34 (42)
253 PRK13488 chemoreceptor glutami 24.8 1.7E+02 0.0036 19.9 4.0 36 117-152 107-145 (157)
254 PF00585 Thr_dehydrat_C: C-ter 24.4 1.4E+02 0.003 18.1 3.3 28 109-136 51-81 (91)
255 KOG2741 Dimeric dihydrodiol de 24.1 49 0.0011 25.7 1.5 24 112-135 105-128 (351)
256 PRK09491 rimI ribosomal-protei 24.1 1.3E+02 0.0029 19.3 3.5 28 39-67 96-124 (146)
257 PF14091 DUF4269: Domain of un 23.8 1.2E+02 0.0026 20.6 3.1 87 42-135 36-133 (152)
258 PRK13493 chemoreceptor glutami 23.8 1.7E+02 0.0037 21.1 4.1 36 117-152 139-177 (213)
259 KOG3235 Subunit of the major N 23.7 1.2E+02 0.0026 20.9 3.1 31 39-69 105-136 (193)
260 PF11746 DUF3303: Protein of u 23.6 1.8E+02 0.004 17.7 5.5 39 121-159 19-58 (91)
261 PHA00450 host dGTPase inhibito 23.5 1.8E+02 0.0038 17.5 4.4 40 118-157 11-57 (85)
262 PRK11191 RNase E inhibitor pro 23.3 1.8E+02 0.0039 19.4 3.9 25 110-134 36-61 (138)
263 KOG2488 Acetyltransferase (GNA 23.2 72 0.0016 22.6 2.0 33 40-73 154-187 (202)
264 cd03008 TryX_like_RdCVF Trypar 23.2 2.4E+02 0.0052 18.8 6.6 46 109-154 66-127 (146)
265 PF15121 TMEM71: TMEM71 protei 22.9 89 0.0019 20.7 2.3 23 125-152 63-85 (149)
266 PF13673 Acetyltransf_10: Acet 22.9 85 0.0018 19.0 2.3 19 44-63 99-117 (117)
267 PRK13491 chemoreceptor glutami 22.9 1.9E+02 0.0041 20.6 4.1 37 117-153 115-154 (199)
268 TIGR03103 trio_acet_GNAT GNAT- 22.8 1.2E+02 0.0026 25.2 3.5 29 38-67 187-216 (547)
269 cd03012 TlpA_like_DipZ_like Tl 22.8 2.1E+02 0.0045 18.0 6.1 41 118-158 72-124 (126)
270 PRK13487 chemoreceptor glutami 22.6 1.9E+02 0.004 20.7 4.1 36 117-152 127-165 (201)
271 PF03698 UPF0180: Uncharacteri 22.6 1.9E+02 0.004 17.3 4.9 37 118-154 9-50 (80)
272 PF12687 DUF3801: Protein of u 22.4 2.4E+02 0.0052 20.1 4.6 44 106-149 31-79 (204)
273 COG1225 Bcp Peroxiredoxin [Pos 22.4 2.6E+02 0.0057 19.0 6.0 48 109-156 65-136 (157)
274 PF09259 Fve: Fungal immunomod 22.2 1.7E+02 0.0036 18.0 3.2 18 140-157 90-110 (111)
275 TIGR02406 ectoine_EctA L-2,4-d 22.0 1E+02 0.0022 20.4 2.7 27 40-67 100-127 (157)
276 PRK10314 putative acyltransfer 22.0 1.1E+02 0.0024 20.4 2.7 24 42-68 111-134 (153)
277 KOG2465 Uncharacterized conser 21.5 84 0.0018 24.0 2.2 19 109-127 169-187 (390)
278 PF14696 Glyoxalase_5: Hydroxy 21.3 2.6E+02 0.0057 18.6 6.7 56 38-95 72-128 (139)
279 PF11080 DUF2622: Protein of u 21.2 2E+02 0.0044 17.9 3.5 28 118-155 22-49 (96)
280 COG1871 CheD Chemotaxis protei 21.2 2.8E+02 0.006 19.1 4.4 36 117-152 114-152 (164)
281 cd03017 PRX_BCP Peroxiredoxin 21.1 2.3E+02 0.005 17.9 6.0 16 141-156 111-126 (140)
282 PF10649 DUF2478: Protein of u 20.9 2.9E+02 0.0062 18.9 5.2 40 119-158 16-64 (159)
283 PF03432 Relaxase: Relaxase/Mo 20.6 2.3E+02 0.005 20.1 4.4 36 115-150 183-218 (242)
284 TIGR03448 mycothiol_MshD mycot 20.5 1.4E+02 0.003 21.9 3.3 28 39-67 259-287 (292)
285 PF09383 NIL: NIL domain; Int 20.4 1.3E+02 0.0028 17.2 2.6 26 109-134 45-74 (76)
286 PF04800 ETC_C1_NDUFA4: ETC co 20.3 2.4E+02 0.0051 17.7 5.9 40 97-136 35-75 (101)
287 PF00515 TPR_1: Tetratricopept 20.2 99 0.0022 14.1 1.7 17 47-63 14-30 (34)
288 PF10033 ATG13: Autophagy-rela 20.1 1.9E+02 0.0042 20.9 3.9 48 110-157 37-100 (233)
No 1
>PRK11478 putative lyase; Provisional
Probab=99.90 E-value=1e-21 Score=129.16 Aligned_cols=122 Identities=24% Similarity=0.380 Sum_probs=87.5
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEEecCCCCCCCCCCCCCCCceEEE
Q 031406 35 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTC 113 (160)
Q Consensus 35 ~~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 113 (160)
+++.+++||+|.|+|++++++||+++|||++......+........+.. ++..++++....+......+ ...+..|+|
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~-~~~g~~hi~ 80 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERPSRP-EACGLRHLA 80 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEecCCCCCCCCC-CCCceeEEE
Confidence 4677899999999999999999999999998643221111111112333 45577777654332211111 223468999
Q ss_pred EEeCCHHHHHHHHHHCCCeEecc----CCCceEEEEEcCCCCeEEEEe
Q 031406 114 IAIRDVSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 114 f~v~d~~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~ie~~~ 157 (160)
|.|+|+++++++|+++|+++... ..+.+.+||+|||||.||++|
T Consensus 81 f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 81 FSVDDIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEeCCHHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 99999999999999999998643 246688999999999999987
No 2
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.89 E-value=8.2e-22 Score=131.84 Aligned_cols=121 Identities=21% Similarity=0.338 Sum_probs=89.7
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCC-----------CCcceEEEEe--CCcEEEEEecCCCCCCC---
Q 031406 37 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWV--GAEMIHLMELPNPDPLS--- 100 (160)
Q Consensus 37 ~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~--g~~~~~l~~~~~~~~~~--- 100 (160)
+.+++||+|.|+|+++|++||++ |||++......+. ......++.. ++..++|+....+....
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~ 79 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHR 79 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCC
Confidence 35899999999999999999998 9998765432111 1122344443 45688998865433221
Q ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEEEee
Q 031406 101 GRPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 101 ~~~~~~~~~~hi~f~v~d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~~~~ 158 (160)
.....+.++.|+||.|+|+++++++|+++|+++..++ .+.+.+|++||||+.|||+|.
T Consensus 80 ~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 80 PAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeeec
Confidence 1123345678999999999999999999999987643 456889999999999999984
No 3
>PLN02367 lactoylglutathione lyase
Probab=99.89 E-value=1.7e-21 Score=138.32 Aligned_cols=126 Identities=15% Similarity=0.181 Sum_probs=95.9
Q ss_pred CceeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeC-------------------CcEEEEEecC
Q 031406 34 DYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-------------------AEMIHLMELP 94 (160)
Q Consensus 34 ~~~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g-------------------~~~~~l~~~~ 94 (160)
...--.+.|++|+|+|++++++||+++|||++......+..+++.+|+..+ +..++|....
T Consensus 70 ~t~~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~ 149 (233)
T PLN02367 70 ATKGYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNW 149 (233)
T ss_pred CCCCcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCC
Confidence 334457999999999999999999999999988876666666777777531 2477887655
Q ss_pred CCCC--CCCCCC--C--CCCceEEEEEeCCHHHHHHHHHHCCCeEeccCC---CceEEEEEcCCCCeEEEEeeC
Q 031406 95 NPDP--LSGRPE--H--GGRDRHTCIAIRDVSKLKMILDKAGISYTLSKS---GRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 95 ~~~~--~~~~~~--~--~~~~~hi~f~v~d~~~~~~~l~~~G~~~~~~~~---g~~~~~~~DPdG~~ie~~~~~ 159 (160)
+... ...... . ..++.||||.|+|+++++++|+++|+++...+. ..+.++++|||||.|||+|..
T Consensus 150 g~e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~ 223 (233)
T PLN02367 150 GTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLK 223 (233)
T ss_pred CCCccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCceEEEEEECCCCCEEEEEecc
Confidence 4331 111111 1 146799999999999999999999999986542 245789999999999999975
No 4
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.88 E-value=4.4e-21 Score=133.24 Aligned_cols=124 Identities=17% Similarity=0.216 Sum_probs=92.2
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-------------------CCcEEEEEecCCC
Q 031406 36 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-------------------GAEMIHLMELPNP 96 (160)
Q Consensus 36 ~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-------------------g~~~~~l~~~~~~ 96 (160)
.--++.|++|+|.|+++|++||+++|||++..+...+...++.+++.. ++..++|+.....
T Consensus 24 ~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~ 103 (185)
T PLN03042 24 KGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGT 103 (185)
T ss_pred CCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCC
Confidence 345799999999999999999999999998876554454455566542 2347888765432
Q ss_pred CCCC------CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCeEeccCC---CceEEEEEcCCCCeEEEEeeC
Q 031406 97 DPLS------GRPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKS---GRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 97 ~~~~------~~~~~~~~~~hi~f~v~d~~~~~~~l~~~G~~~~~~~~---g~~~~~~~DPdG~~ie~~~~~ 159 (160)
...+ .....+.++.|+||.|+|+++++++|+++|+.+...+. +.+.++++|||||.|||++..
T Consensus 104 ~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 104 ESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred cccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCceeEEEEECCCCCEEEEEECC
Confidence 2100 01112246799999999999999999999999875432 345678899999999999864
No 5
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.88 E-value=8e-21 Score=123.70 Aligned_cols=119 Identities=27% Similarity=0.453 Sum_probs=86.8
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEEecCCCCCCCCCCCCCCCceEEEEEe
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 116 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v 116 (160)
.+++||+|.|.|++++++||+++|||+.......+........+.. ++..+++............+ .+.+..|++|.|
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~-~~~g~~h~~~~v 80 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPERPSYP-EACGLRHLAFSV 80 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCCCCCCC-cCCCceEEEEEe
Confidence 4789999999999999999999999998754322221111223333 55677777654432211112 234578999999
Q ss_pred CCHHHHHHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEEEe
Q 031406 117 RDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~~~ 157 (160)
+|+++++++|+++|+++...+ .+.+.+|++||+||.|||+|
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 81 EDIEAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred CCHHHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEecC
Confidence 999999999999999986532 35678999999999999976
No 6
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.88 E-value=7.5e-21 Score=130.13 Aligned_cols=122 Identities=22% Similarity=0.263 Sum_probs=89.0
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeec----CC--------------CCCCcceEEEEeC-CcEEEEEecCCCCC
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEAR----PH--------------DKLPYRGAWLWVG-AEMIHLMELPNPDP 98 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~----~~--------------~~~~~~~~~~~~g-~~~~~l~~~~~~~~ 98 (160)
++++||.|.|+|+++|++||+++|||++.... .. .......+++..+ +..++|++......
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~ 82 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQEN 82 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCC
Confidence 57899999999999999999999999875311 10 0111334556554 45799998875433
Q ss_pred CCCCC-CCCCCceEEEEEeCCHHHHHHHHHHCCCeEeccC-----C---CceEEEEEcCCCCeEEEEeeC
Q 031406 99 LSGRP-EHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK-----S---GRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 99 ~~~~~-~~~~~~~hi~f~v~d~~~~~~~l~~~G~~~~~~~-----~---g~~~~~~~DPdG~~ie~~~~~ 159 (160)
+.... ..+.+..|+||.|+|+++++++|+++|+++.... . +.+.+|++|||||.|||++.+
T Consensus 83 ~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 83 PEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred CCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 22211 2245679999999999999999999998764321 1 237899999999999999864
No 7
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.87 E-value=4.2e-21 Score=127.73 Aligned_cols=118 Identities=12% Similarity=0.043 Sum_probs=87.9
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCC--CCCCCCCceEEEEEeC
Q 031406 40 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAIR 117 (160)
Q Consensus 40 i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~--~~~~~~~~~hi~f~v~ 117 (160)
++|+.|.|+|++++++||+++|||++......+. ....++..++..+.+........... ....+.+..|++|.|+
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~ 78 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVD 78 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeC
Confidence 5899999999999999999999999876543221 22344555666677665433221100 0123455789999999
Q ss_pred CHHHHHHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEEEeeC
Q 031406 118 DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 118 d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
|+++++++|+++|+++..++ .+.+.++++||||++|||+|.+
T Consensus 79 Dvda~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~ 124 (136)
T cd08342 79 DAAAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRK 124 (136)
T ss_pred CHHHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecC
Confidence 99999999999999997543 4568999999999999999964
No 8
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.87 E-value=7.3e-21 Score=124.06 Aligned_cols=117 Identities=23% Similarity=0.318 Sum_probs=84.6
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeC
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 117 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~ 117 (160)
+++|+.|.|+|++++++||+++|||+.......+..+...+|+.. ++..+++++........ ......+..|+||.|+
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~g~~hi~f~v~ 79 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSP-NEGERTGWAHLAFSVG 79 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCc-ccCCCCceEEEEEECC
Confidence 478999999999999999999999997543322233334566666 45678888654322111 1122245689999996
Q ss_pred ---CHHHHHHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEEE
Q 031406 118 ---DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFT 156 (160)
Q Consensus 118 ---d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~~ 156 (160)
|+++++++|+++|+++...+ .+.+.++++|||||.|||.
T Consensus 80 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 80 SKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEeC
Confidence 58999999999999987643 3445678999999999983
No 9
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.87 E-value=1.2e-20 Score=127.54 Aligned_cols=124 Identities=23% Similarity=0.307 Sum_probs=87.0
Q ss_pred CCCceeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCc----EEEEEecCCCCCCCCCCCCCC
Q 031406 32 IRDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGG 107 (160)
Q Consensus 32 ~~~~~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~----~~~l~~~~~~~~~~~~~~~~~ 107 (160)
.+.....+++|+.|.|.|++++++||+++|||++......+......+++..++. .+.+....... ....+.
T Consensus 10 ~~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~ 85 (150)
T TIGR00068 10 DPKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTE----KYDLGN 85 (150)
T ss_pred CcccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCC----cccCCC
Confidence 3445667999999999999999999999999998764433333233345544321 23322211111 112234
Q ss_pred CceEEEEEeCCHHHHHHHHHHCCCeEeccC-----CCceEEEEEcCCCCeEEEEeeC
Q 031406 108 RDRHTCIAIRDVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 108 ~~~hi~f~v~d~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
+..|++|.|+|+++++++|.++|+++..++ .+.+.+||+|||||+|||++..
T Consensus 86 g~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 86 GFGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred ceeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 578999999999999999999999886543 2246789999999999999865
No 10
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.87 E-value=1.7e-20 Score=124.13 Aligned_cols=115 Identities=17% Similarity=0.276 Sum_probs=85.6
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCC-cceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 031406 36 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLP-YRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 114 (160)
Q Consensus 36 ~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~-~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f 114 (160)
|+.+++|++|.|+|++++++||+++||++........... ....++..++..+.+....... .....|++|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~--------~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGGLWIAIMEGDSLQ--------ERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCCeEEEEecCCCCC--------CCCceEEEE
Confidence 4668999999999999999999999999876543221111 1123445566677776432211 123689999
Q ss_pred EeC--CHHHHHHHHHHCCCeEeccC---C-CceEEEEEcCCCCeEEEEee
Q 031406 115 AIR--DVSKLKMILDKAGISYTLSK---S-GRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 115 ~v~--d~~~~~~~l~~~G~~~~~~~---~-g~~~~~~~DPdG~~ie~~~~ 158 (160)
.|+ ++++++++|+++|+.+..+. . .++.+||+|||||.|||.+.
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecC
Confidence 998 79999999999999987542 2 36899999999999999875
No 11
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.86 E-value=2e-20 Score=124.90 Aligned_cols=113 Identities=23% Similarity=0.361 Sum_probs=87.3
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 031406 36 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 115 (160)
Q Consensus 36 ~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 115 (160)
|+.++.|+.|.|+|++++++||+++|||++....+ ..+++..++..+.+....... ......+..|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g~~l~l~~~~~~~----~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNGLWIALNEEKDIP----RNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCCeEEEeeccCCCC----CccCCCCeeEEEEE
Confidence 46789999999999999999999999999875422 236677777777665432211 11123446899999
Q ss_pred eC--CHHHHHHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEEEee
Q 031406 116 IR--DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 116 v~--d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~~~~ 158 (160)
++ |+++++++++++|+++...+ .+++.+||+|||||+||+.+.
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~ 119 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTG 119 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 98 99999999999999986432 367999999999999999874
No 12
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.86 E-value=2.4e-20 Score=121.09 Aligned_cols=114 Identities=21% Similarity=0.315 Sum_probs=85.2
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCC----cEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 031406 40 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA----EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 115 (160)
Q Consensus 40 i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~----~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 115 (160)
+.|++|.|+|++++.+||+++|||++......+......+++..++ ..+++........ ....+.+..|++|.
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~i~~~ 77 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEE---PYDNGNGFGHLAFA 77 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCC---CcCCCCCeEEEEEE
Confidence 5799999999999999999999999876544333334456666643 3555554332211 11223456899999
Q ss_pred eCCHHHHHHHHHHCCCeEeccC---CCceEEEEEcCCCCeEEEE
Q 031406 116 IRDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFT 156 (160)
Q Consensus 116 v~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~ie~~ 156 (160)
++|+++++++++++|+++...+ .+.+.+||+|||||+|||+
T Consensus 78 v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 78 VDDVYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred eCCHHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEEeC
Confidence 9999999999999999997654 3567889999999999984
No 13
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.86 E-value=8.9e-21 Score=124.29 Aligned_cols=119 Identities=20% Similarity=0.414 Sum_probs=86.9
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCC--CCCCCCceEEEEEe
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGR--PEHGGRDRHTCIAI 116 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~--~~~~~~~~hi~f~v 116 (160)
+++|+.|.|+|++++++||+++|||+.......+..+...+++..++..++|............ ...+.+..|+||.|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v 80 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIEV 80 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEEc
Confidence 4789999999999999999999999987543223334455677777778888764332211100 11234568999999
Q ss_pred CCHHHHHHHHHHCCCeEecc-C----CCceEEEE--EcCCCCeEEEEe
Q 031406 117 RDVSKLKMILDKAGISYTLS-K----SGRPAIFT--RDPDANALEFTQ 157 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~-~----~g~~~~~~--~DPdG~~ie~~~ 157 (160)
+|+++++++|.++|+++..+ + .|.+..++ +||||+.||+.|
T Consensus 81 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 81 DDIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred CCHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 99999999999999998653 2 23344566 699999999975
No 14
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.86 E-value=4.3e-20 Score=120.21 Aligned_cols=117 Identities=21% Similarity=0.373 Sum_probs=87.5
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEe
Q 031406 37 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 116 (160)
Q Consensus 37 ~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v 116 (160)
+.+++|+.|.|+|++++++||+++|||+........ ...++..++..+++......... .....+.+..|++|.+
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~hi~~~~ 75 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV----GRKALRFGSQKINLHPVGGEFEP-AAGSPGPGSDDLCLIT 75 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC----CceEEEeCCEEEEEecCCCccCc-CccCCCCCCceEEEEe
Confidence 357899999999999999999999999987643321 23556667777777665432211 1112234568999999
Q ss_pred CC-HHHHHHHHHHCCCeEeccC-------CCceEEEEEcCCCCeEEEEee
Q 031406 117 RD-VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 117 ~d-~~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~ie~~~~ 158 (160)
++ +++++++++++|+++...+ ++++.+||+|||||+||+.++
T Consensus 76 ~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 76 EPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred cccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 74 9999999999999886432 235789999999999999985
No 15
>PLN02300 lactoylglutathione lyase
Probab=99.86 E-value=2.3e-20 Score=138.54 Aligned_cols=123 Identities=24% Similarity=0.322 Sum_probs=90.2
Q ss_pred CCceeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCC--c--EEEEEecCCCCCCCCCCCCCCC
Q 031406 33 RDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--E--MIHLMELPNPDPLSGRPEHGGR 108 (160)
Q Consensus 33 ~~~~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~--~--~~~l~~~~~~~~~~~~~~~~~~ 108 (160)
+.+.+.++.|++|.|+|++++++||+++|||+.......+...+...|+..++ . .+++....... ....+.+
T Consensus 18 ~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~----~~~~~~g 93 (286)
T PLN02300 18 PKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVD----KYDIGTG 93 (286)
T ss_pred CccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCC----ccccCCC
Confidence 44678999999999999999999999999999876443333334456666542 2 23333221111 1123455
Q ss_pred ceEEEEEeCCHHHHHHHHHHCCCeEeccC----C-CceEEEEEcCCCCeEEEEeeC
Q 031406 109 DRHTCIAIRDVSKLKMILDKAGISYTLSK----S-GRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~~G~~~~~~~----~-g~~~~~~~DPdG~~ie~~~~~ 159 (160)
..|++|.|+|+++++++++++|+++...+ . +.+.+||+|||||.|||++++
T Consensus 94 ~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~ 149 (286)
T PLN02300 94 FGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRG 149 (286)
T ss_pred ccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCC
Confidence 78999999999999999999999987543 2 246789999999999999865
No 16
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.86 E-value=2.4e-20 Score=119.15 Aligned_cols=110 Identities=40% Similarity=0.745 Sum_probs=85.7
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCc-EEEEEecCCCCCCCCCCCCCCCceEEEEEeCC
Q 031406 40 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 118 (160)
Q Consensus 40 i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d 118 (160)
|+|++|.|+|++++++||+++|||+........ ....|+..++. .+++......... +..+++..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDGPQLHLIEEDPPDAL---PEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCCcEEEEEecCCCccc---cCCCcccceEEEEeCC
Confidence 589999999999999999999999976543221 23467777655 7787766544321 2223456899999999
Q ss_pred HHHHHHHHHHCCCeEeccC---CCceEEEEEcCCCCeEEE
Q 031406 119 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEF 155 (160)
Q Consensus 119 ~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~ie~ 155 (160)
+++++++++++|+++..++ .+.+.+++.||+||+|||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVPGDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCCCCCccEEEEECCCCCEEeC
Confidence 9999999999999987654 456889999999999996
No 17
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.85 E-value=6.7e-20 Score=122.98 Aligned_cols=113 Identities=16% Similarity=0.237 Sum_probs=80.6
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCC-CcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 031406 36 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKL-PYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 114 (160)
Q Consensus 36 ~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~-~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f 114 (160)
.+.+|+|++|.|+|++++.+||+++|||++......+.. .....|+..+.. .+........ ++++.|+||
T Consensus 3 ~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~-~h~~~~~~~~--------~~~~~Hiaf 73 (143)
T cd07243 3 GAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK-PHDIAFVGGP--------DGKLHHFSF 73 (143)
T ss_pred CCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC-cceEEEecCC--------CCCceEEEE
Confidence 456899999999999999999999999997654322111 122456655433 2222221110 134789999
Q ss_pred EeCCHHH---HHHHHHHCCCeEeccC-----CCceEEEEEcCCCCeEEEEe
Q 031406 115 AIRDVSK---LKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 115 ~v~d~~~---~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~ie~~~ 157 (160)
.|+|+++ +.++|+++|+++...+ .+++.+||+|||||.|||.+
T Consensus 74 ~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 74 FLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 9998887 5689999999986432 23578999999999999975
No 18
>PRK10291 glyoxalase I; Provisional
Probab=99.85 E-value=4e-20 Score=121.84 Aligned_cols=111 Identities=23% Similarity=0.359 Sum_probs=80.3
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCc----EEEEEecCCCCCCCCCCCCCCCceEEEEEeCCH
Q 031406 44 GILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 119 (160)
Q Consensus 44 ~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~----~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~ 119 (160)
+|.|+|+++|++||+++|||++......+...+..+++..++. .+++...... .....+.+..|+||.|+|+
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~g~~~~hlaf~V~d~ 76 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGV----DKYELGTAYGHIALSVDNA 76 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCC----CCCcCCCCeeEEEEEeCCH
Confidence 4789999999999999999998765544444555666665432 2333321111 1112345678999999999
Q ss_pred HHHHHHHHHCCCeEeccC----CC-ceEEEEEcCCCCeEEEEee
Q 031406 120 SKLKMILDKAGISYTLSK----SG-RPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 120 ~~~~~~l~~~G~~~~~~~----~g-~~~~~~~DPdG~~ie~~~~ 158 (160)
++++++|+++|+++...+ .+ .+.++|+|||||.|||++.
T Consensus 77 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~ 120 (129)
T PRK10291 77 AEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEE 120 (129)
T ss_pred HHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEc
Confidence 999999999999987532 33 3567889999999999985
No 19
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.85 E-value=1.1e-19 Score=123.76 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=84.4
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeC---CcEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 115 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g---~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 115 (160)
+++||+|.|+|++++++||+++|||++..... ....++..+ +..+.+........ .. ...+++.|++|.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~-----~~~~~~~~~~~~~~~l~l~~~~~~~~--~~-~~~~~l~Hiaf~ 72 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG-----DRVRLEEGGGGPGAVVDVLEEPDQPR--GR-PGAGTVHHVAFR 72 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC-----CEEEEEecCCCCCCEEEEEeCCCCCC--Cc-ccCCceEEEEEE
Confidence 57999999999999999999999999876533 122344433 56788777532111 11 112446899999
Q ss_pred eCC---HHHHHHHHHHCCCeEeccC--CCceEEEEEcCCCCeEEEEeeC
Q 031406 116 IRD---VSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 116 v~d---~~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
|+| +++++++|+++|+.+.... .+.+.+||+|||||.|||++..
T Consensus 73 v~d~~dvd~~~~~L~~~Gv~~~~~~~~~~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 73 VPDDEELEAWKERLEALGLPVSGIVDRFYFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CCCHHHHHHHHHHHHHCCCCcccccccccEEEEEEECCCCcEEEEEECC
Confidence 998 8999999999999875432 3457899999999999999865
No 20
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.84 E-value=3.8e-19 Score=115.89 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=84.4
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeCCHHHH
Q 031406 43 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 122 (160)
Q Consensus 43 v~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~~~~ 122 (160)
-.|.|+|++++++||+++|||++....+.+........+..++..+.+....................|++|.|+|++++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d~~ 82 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVDAH 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCcccccccccCCCceEEEEEEECCHHHH
Confidence 46889999999999999999999875533332222345666776676655443221110112223457999999999999
Q ss_pred HHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEEEee
Q 031406 123 KMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 123 ~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~~~~ 158 (160)
+++++++|+++..++ .|.+.++++|||||+|+|.++
T Consensus 83 ~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 83 YERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred HHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEecC
Confidence 999999999987543 466889999999999999875
No 21
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.84 E-value=1.1e-19 Score=120.14 Aligned_cols=110 Identities=22% Similarity=0.386 Sum_probs=84.2
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeC--
Q 031406 40 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR-- 117 (160)
Q Consensus 40 i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~-- 117 (160)
|+||.|.|+|++++++||+++|||++....+ ...++..++.++.+........ . ...++..|++|.++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~~~~l~l~~~~~~~~--~--~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIGGTWLALNEEPDIPR--N--EIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeCceEEEEEccCCCCc--C--CcCccceEEEEEecHH
Confidence 5899999999999999999999999865322 1245667777777655432111 1 11234689999998
Q ss_pred CHHHHHHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEEEeeC
Q 031406 118 DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 118 d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
|+++++++|+++|+.+..++ .+++.+||+|||||+|||.++.
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecCc
Confidence 59999999999999986432 3568999999999999999864
No 22
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.84 E-value=3e-19 Score=114.95 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=82.8
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCC-cEEEEEecCCCCCCCCCCCCCCCceEEEEEeCC
Q 031406 40 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 118 (160)
Q Consensus 40 i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d 118 (160)
+.|++|.|+|++++++||+++||+++..... +. ....++..++ ....++....... ..+...|++|.++|
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~f~v~d 71 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GG--GDYAVFSTGGGAVGGLMKAPEPAA------GSPPGWLVYFAVDD 71 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CC--CceEEEEeCCccEEEEecCCCCCC------CCCCeEEEEEEeCC
Confidence 4799999999999999999999999875442 11 1334555654 3455555543321 12335799999999
Q ss_pred HHHHHHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEEEe
Q 031406 119 VSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 119 ~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~~~ 157 (160)
+++++++|+++|+++..++ ++++.++++|||||.|+|+|
T Consensus 72 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 72 VDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 9999999999999987543 36689999999999999986
No 23
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.84 E-value=2.4e-19 Score=117.23 Aligned_cols=107 Identities=21% Similarity=0.305 Sum_probs=80.8
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 031406 37 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 115 (160)
Q Consensus 37 ~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 115 (160)
..++.|+.|.|+|+++|++||+++|||+...... ...++.. ++..+.+...... ....|++|.
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~----------~~~~h~a~~ 65 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPFG------PFAVVKLDNGVSLDFAQPDGE----------IPPQHYAFL 65 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC------CEEEEEcCCCcEEEEecCCCC----------CCcceEEEE
Confidence 4588999999999999999999999999865321 1233443 3345555443111 124799998
Q ss_pred eC--CHHHHHHHHHHCCCeEecc-----------CCCceEEEEEcCCCCeEEEEeeC
Q 031406 116 IR--DVSKLKMILDKAGISYTLS-----------KSGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 116 v~--d~~~~~~~l~~~G~~~~~~-----------~~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
++ |+++++++|+++|+++... ..+++.+||+|||||.|||++.|
T Consensus 66 v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 66 VSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred eCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 87 6999999999999997542 24679999999999999999975
No 24
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.84 E-value=3.4e-19 Score=116.95 Aligned_cols=114 Identities=25% Similarity=0.346 Sum_probs=86.2
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhc---CCEEeeecCCCCCCcceEEEEe-CCcEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 031406 39 SVHHVGILCENLERSLEFYQNIL---GLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 114 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~l---G~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f 114 (160)
+|+||.|.|+|++++++||+++| ||+....... ...|... ++..+.++........ .....+.+..|+||
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~-----~~~~~~~~~~~~i~l~~~~~~~~~-~~~~~~~g~~hia~ 74 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED-----GRSWRAGDGGTYLVLQQADGESAG-RHDRRNPGLHHLAF 74 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc-----CceEEecCCceEEEEEecccCCCc-ccccCCcCeeEEEE
Confidence 57999999999999999999999 9998775421 1244443 6677888776544322 11122344689999
Q ss_pred EeC---CHHHHHHHHHHCCCeEeccC-------CCceEEEEEcCCCCeEEEEee
Q 031406 115 AIR---DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 115 ~v~---d~~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~ie~~~~ 158 (160)
.|+ |+++++++|+++|+.+...+ .+.+.+|++|||||+|||+.+
T Consensus 75 ~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 75 RAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 997 58899999999999987543 256899999999999999864
No 25
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.84 E-value=3.5e-19 Score=114.89 Aligned_cols=113 Identities=21% Similarity=0.321 Sum_probs=81.3
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeC---CcEEEEEecCCCCCCCCCCCCCCCceEEEEEeCC
Q 031406 42 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 118 (160)
Q Consensus 42 hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g---~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d 118 (160)
||.|.|.|++++++||+++|||++........ ....+.+..+ +..+++......... .....++..|++|.|+|
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~v~d 77 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGSPETSLVLAPPANPAAM--SGLQPGGTPGLVLATDD 77 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCCCeeEEEEeCCCCcccc--ccccCCCceEEEEEehH
Confidence 89999999999999999999999887543111 1222333332 234554443332211 12223456799999999
Q ss_pred HHHHHHHHHHCCCeEeccC---CCceEEEEEcCCCCeEEEEe
Q 031406 119 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 119 ~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~ie~~~ 157 (160)
+++++++++++|+.+..++ .+++.++++||+||+|||+|
T Consensus 78 i~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 78 IDATYEELKARGVEFSEEPREMPYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHHhCCCEEeeccccCCCceEEEEECCCCCEEEEeC
Confidence 9999999999999998654 35689999999999999975
No 26
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.83 E-value=3.3e-19 Score=122.45 Aligned_cols=118 Identities=21% Similarity=0.343 Sum_probs=83.2
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 031406 35 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 114 (160)
Q Consensus 35 ~~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f 114 (160)
+.+.+|+|++|.|+|++++++||+++|||++......+.......|+..++....+........ ..+.+.|+||
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~------~~~~~~hiaf 75 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRDPAG------ARGRLHHLAY 75 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecCCCC------CCCCceEEEE
Confidence 4678999999999999999999999999998754332222223467766443222322221111 1134689999
Q ss_pred EeCCH---HHHHHHHHHCCCeEeccC-----CCceEEEEEcCCCCeEEEEee
Q 031406 115 AIRDV---SKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 115 ~v~d~---~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~ie~~~~ 158 (160)
.|+|. ++++++|+++|+++...+ .....+|++|||||+|||.+.
T Consensus 76 ~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 76 ALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred ECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 99854 578899999999986432 123468999999999999886
No 27
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.83 E-value=4.7e-19 Score=116.07 Aligned_cols=109 Identities=18% Similarity=0.280 Sum_probs=81.7
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 031406 35 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 114 (160)
Q Consensus 35 ~~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f 114 (160)
.++.+|.|++|.|+|++++.+||+++|||++..... ...|+..++....+....+. ....|++|
T Consensus 2 ~~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~~~~i~l~~~~----------~~~~~iaf 65 (124)
T cd08361 2 IELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDARDHTLVYIEGD----------PAEQASGF 65 (124)
T ss_pred ceEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCccEEEEEEeCC----------CceEEEEE
Confidence 467899999999999999999999999999765321 23667765432222222111 11478999
Q ss_pred EeCC---HHHHHHHHHHCCCeEeccC-------CCceEEEEEcCCCCeEEEEeeC
Q 031406 115 AIRD---VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 115 ~v~d---~~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
+|++ +++++++++++|+++...+ .+.+++||+|||||.||+...+
T Consensus 66 ~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 66 ELRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred EECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 9985 9999999999999986532 3356789999999999998765
No 28
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.83 E-value=3.3e-19 Score=115.97 Aligned_cols=113 Identities=14% Similarity=0.141 Sum_probs=76.5
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeCC
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 118 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d 118 (160)
++.++.|.|+|+++|++||+++|||+.....+ . ...+ .++..+.+...............++...|++|.|+|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~----~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v~d 74 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E----NVTF-EGGFALQEGYSWLEGISKADIIEKSNNFELYFEEED 74 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c----eEEE-eccceeccchhhhccCCcccccccCCceEEEEEehh
Confidence 67899999999999999999999999864322 1 1111 222222221110000000111123345799999999
Q ss_pred HHHHHHHHHHCCC-eEecc----CCCceEEEEEcCCCCeEEEEee
Q 031406 119 VSKLKMILDKAGI-SYTLS----KSGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 119 ~~~~~~~l~~~G~-~~~~~----~~g~~~~~~~DPdG~~ie~~~~ 158 (160)
+++++++|+++|. ++..+ ++|.+.++|+|||||.|||.+.
T Consensus 75 vd~~~~~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 75 FDAFLDKLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred hHHHHHHHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence 9999999999975 56543 3567899999999999999874
No 29
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.83 E-value=5.1e-19 Score=115.20 Aligned_cols=107 Identities=19% Similarity=0.231 Sum_probs=80.4
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeC-
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 117 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~- 117 (160)
++.||+|.|+|+++|++||+++|||+...... . ...|+..++..+.+....... .+..|++|.++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~-~----~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE-D----GALYLRMDDRAWRIAVHPGEA---------DDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCC-C----CeEEEEccCCceEEEEEeCCC---------CceeEEEEEECC
Confidence 68999999999999999999999998765322 1 236666655444444332211 23579999997
Q ss_pred --CHHHHHHHHHHCCCeEeccC-------CCceEEEEEcCCCCeEEEEeeC
Q 031406 118 --DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 118 --d~~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
|+++++++|+++|+++...+ .+++.+||+|||||.||+...+
T Consensus 68 ~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 68 EAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 58889999999999997532 3357899999999999998653
No 30
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.83 E-value=3.7e-19 Score=116.00 Aligned_cols=107 Identities=26% Similarity=0.415 Sum_probs=82.1
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEe--
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI-- 116 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v-- 116 (160)
+|+|+.|.|+|++++.+||+++|||+.....+ ...++..++..+.+....... ......|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~-------~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD------KGAYLEAGDLWLCLSVDANVG-------PAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC------CceEEecCCEEEEEecCCCCC-------CCCCeeeEEEEeCH
Confidence 47899999999999999999999999876443 125666676655554322211 123468999998
Q ss_pred CCHHHHHHHHHHCCCeEeccC-CCceEEEEEcCCCCeEEEEee
Q 031406 117 RDVSKLKMILDKAGISYTLSK-SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~~-~g~~~~~~~DPdG~~ie~~~~ 158 (160)
+|++++++++.++|+++...+ ..++.+||.|||||.|||++.
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~~~~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTSEGDSFYFLDPDGHKLELHVG 110 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCCCccEEEEECCCCCEEEEEeC
Confidence 489999999999999886543 346799999999999999874
No 31
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.83 E-value=3.3e-19 Score=116.64 Aligned_cols=118 Identities=22% Similarity=0.354 Sum_probs=89.0
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCC-CCCcceEEEEeCCcEEEEEecCCCCCCCC--CCCCCCCceEEEEEe
Q 031406 40 VHHVGILCENLERSLEFYQNILGLEINEARPHD-KLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAI 116 (160)
Q Consensus 40 i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~g~~~~~l~~~~~~~~~~~--~~~~~~~~~hi~f~v 116 (160)
|+||+|.|+|++++++||+++|||+.....+.. ......+++..++..+++++......... ....+.+..|++|.|
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~v 80 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFEV 80 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEEe
Confidence 579999999999999999999999987654432 23344577777888898887654322111 012345678999999
Q ss_pred CCHHHHHHHHHHCCCeEeccC----CCceEEEEEcCC---CCeEEEEe
Q 031406 117 RDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPD---ANALEFTQ 157 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPd---G~~ie~~~ 157 (160)
+|++++++++.++|+++..++ .+++.+++.||+ |+.|||+|
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 81 DDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred CCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999987654 345666666665 99999975
No 32
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.82 E-value=1.6e-18 Score=112.57 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=83.7
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeCCHHHH
Q 031406 43 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 122 (160)
Q Consensus 43 v~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~~~~ 122 (160)
+.|.|+|++++.+||+++|||+.......+........+..++..+.+........ ..........|++|.|+|++++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~v~d~~~~ 82 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPEHG--SPASWGGTPVSLHLYVEDVDAT 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcccC--CCCCCCCceEEEEEEeCCHHHH
Confidence 56889999999999999999998875542333333445666777777765432211 0111234457999999999999
Q ss_pred HHHHHHCCCeEecc----CCCceEEEEEcCCCCeEEEEe
Q 031406 123 KMILDKAGISYTLS----KSGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 123 ~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~ie~~~ 157 (160)
++++.++|+++..+ +.+.+.++++|||||.|+|.|
T Consensus 83 ~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 83 FARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence 99999999998654 356789999999999999986
No 33
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.82 E-value=9.1e-19 Score=114.34 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=80.3
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCC--C---CC-CCCCCCCCCceEEE
Q 031406 40 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNP--D---PL-SGRPEHGGRDRHTC 113 (160)
Q Consensus 40 i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~--~---~~-~~~~~~~~~~~hi~ 113 (160)
+.|+.|+|+|++++.+||+++|||+.....+.+ ....+..++..+.+...... . .. ...+....+..|++
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHESG----DYGELETGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEIA 76 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCCC----cEEEecCCcEEEEEEcccccccccccCccCCccccCCCcEEEE
Confidence 479999999999999999999999986533211 11223345555555433211 0 00 01111222346899
Q ss_pred EEeCCHHHHHHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEEEee
Q 031406 114 IAIRDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 114 f~v~d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~~~~ 158 (160)
|.|+|+++++++++++|+++..++ .|.+.++++|||||.||+.++
T Consensus 77 ~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 77 FVTDDVAAAFARAVEAGAVLVSEPKEKPWGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEcCCHHHHHHHHHHcCCEeccCCccCCCCcEEEEEECCCCCEEEEecC
Confidence 999999999999999999886543 466889999999999999874
No 34
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.82 E-value=9.3e-19 Score=112.79 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=79.7
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEe
Q 031406 37 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 116 (160)
Q Consensus 37 ~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v 116 (160)
+.+++|+.|.|+|++++++||++ |||+...... ...|+..++....+....... ...+.|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD------DELYYRGYGTDPFVYVARKGE--------KARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC------CeEEEecCCCccEEEEcccCC--------cCcccEEEEEE
Confidence 35899999999999999999999 9998865422 236666543332333222111 13368999999
Q ss_pred CCHHHHHHHHHHCCCeEecc---CCCceEEEEEcCCCCeEEEEe
Q 031406 117 RDVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~---~~g~~~~~~~DPdG~~ie~~~ 157 (160)
+|.+++.+.+++.|..+... +.+++.++|+|||||.||++.
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~ 109 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLEAPGGGKRVTLTDPDGFPVELVY 109 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCCCCCCceEEEEECCCCCEEEEEe
Confidence 99999999999999987653 356789999999999999975
No 35
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.82 E-value=9.5e-19 Score=114.07 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=78.8
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CC-cEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 031406 37 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GA-EMIHLMELPNPDPLSGRPEHGGRDRHTCI 114 (160)
Q Consensus 37 ~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~f 114 (160)
+.+++|++|.|+|++++++||+++|||+.....+. ..+++.. ++ ....+...... ..+..|++|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~---------~~~~~hiaf 67 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDDQ-----GRVYLKAWDEFDHHSIVLREAD---------TAGLDFMGF 67 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecCC-----ceEEEEccCCCcccEEEeccCC---------CCCeeEEEE
Confidence 46899999999999999999999999998654321 1244544 21 11222211111 123689999
Q ss_pred EeC---CHHHHHHHHHHCCCeEeccC-----CCceEEEEEcCCCCeEEEEee
Q 031406 115 AIR---DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 115 ~v~---d~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~ie~~~~ 158 (160)
.++ |+++++++++++|+++...+ ..++.+||+|||||.||+++.
T Consensus 68 ~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 119 (122)
T cd07265 68 KVLDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYAD 119 (122)
T ss_pred EeCCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEe
Confidence 997 88999999999999986532 235789999999999999874
No 36
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.82 E-value=2.1e-19 Score=121.88 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=79.0
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCC-CCCcceEEEEeCCc--EEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHD-KLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIA 115 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 115 (160)
+|+||+|.|+|++++++||+++|||++......+ .......|+..++. .+......-.. ..+.++.|+||.
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~------~~~~g~~Hiaf~ 74 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ------GPESGVHHAAFE 74 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc------CCCCceeEEEEE
Confidence 4799999999999999999999999987543222 12234566666432 11110000000 013557999999
Q ss_pred eCCHHHHH---HHHHHCCCeEeccC-----CCceEEEEEcCCCCeEEEEe
Q 031406 116 IRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 116 v~d~~~~~---~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~ie~~~ 157 (160)
|+|++++. ++|+++|+++...+ .....+|++|||||+|||+.
T Consensus 75 v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~ 124 (153)
T cd07257 75 VHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYT 124 (153)
T ss_pred cCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEc
Confidence 99999986 99999999987543 12456799999999999985
No 37
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.82 E-value=5.8e-19 Score=115.11 Aligned_cols=116 Identities=21% Similarity=0.400 Sum_probs=83.8
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCC-CcceEEEEe----CCcEEEEEecCCCCCCCCCCCCCCCceEEE
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKL-PYRGAWLWV----GAEMIHLMELPNPDPLSGRPEHGGRDRHTC 113 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~-~~~~~~~~~----g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 113 (160)
+|+||+|.|.|++++++||+++|||+.......... .....++.. ++..++|+........ ......+..|++
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~--~~~~~~~~~hi~ 78 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPK--GRRGPGQIHHIA 78 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCC--CCCCCCcEEEEE
Confidence 478999999999999999999999998765442221 112233332 3457777776543221 111223468999
Q ss_pred EEeC---CHHHHHHHHHHCCCeEeccC--CCceEEEEEcCCCCeEEEE
Q 031406 114 IAIR---DVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFT 156 (160)
Q Consensus 114 f~v~---d~~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~ie~~ 156 (160)
|.|+ ++++++++++++|+++.... .+.+.+||+||+||+|||.
T Consensus 79 f~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 79 FSVPSEASLDAWRERLRAAGVPVSGVVDHFGERSIYFEDPDGLRLELT 126 (126)
T ss_pred EEcCCHHHHHHHHHHHHHcCCcccceEeecceEEEEEECCCCCEEEeC
Confidence 9998 57999999999999886532 4678999999999999984
No 38
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.82 E-value=2.8e-18 Score=112.05 Aligned_cols=112 Identities=29% Similarity=0.373 Sum_probs=83.3
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCC--cEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIA 115 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 115 (160)
++|+||.|.|+|++++++||+++|||++....+ ..+++..++ ..+.+....... .......+..|++|.
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~~~~~l~l~~~~~~~---~~~~~~~~~~hi~f~ 71 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGGKRPLLVLEEDPDAP---PAPPGATGLYHFAIL 71 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCCCeEEEEEEeCCCCC---cccCCCCcEEEEEEE
Confidence 378999999999999999999999999986522 236666655 345555443221 111223446899999
Q ss_pred eC---CHHHHHHHHHHCCCeEeccC--CCceEEEEEcCCCCeEEEEee
Q 031406 116 IR---DVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 116 v~---d~~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~ie~~~~ 158 (160)
|+ +++++++++.++|+++.... ...+.+|++|||||+|||.+.
T Consensus 72 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~ 119 (125)
T cd07255 72 LPSRADLAAALRRLIELGIPLVGASDHLVSEALYLSDPEGNGIEIYAD 119 (125)
T ss_pred CCCHHHHHHHHHHHHHcCCceeccccccceeEEEEECCCCCEEEEEEe
Confidence 97 58899999999999886543 234789999999999999874
No 39
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.81 E-value=8.4e-19 Score=112.63 Aligned_cols=105 Identities=23% Similarity=0.397 Sum_probs=80.0
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeC--CH
Q 031406 42 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR--DV 119 (160)
Q Consensus 42 hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~--d~ 119 (160)
|+.|.|+|++++++||+++|||+...... ...++..++..+.+........ ......|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~------~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS------KEAYFELAGLWICLMEEDSLQG------PERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC------ceeEEEecCeEEEeccCCCcCC------CCCCccEEEEEcCHHHH
Confidence 79999999999999999999999865432 1255666666665544332111 1234689999995 89
Q ss_pred HHHHHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEEEee
Q 031406 120 SKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 120 ~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~~~~ 158 (160)
+++++++.++|+++.... .+++.+|++|||||+||++..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 999999999999986531 357899999999999999864
No 40
>PRK06724 hypothetical protein; Provisional
Probab=99.81 E-value=2.1e-18 Score=113.60 Aligned_cols=108 Identities=21% Similarity=0.267 Sum_probs=75.6
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHHhc---CCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEE
Q 031406 36 GVVSVHHVGILCENLERSLEFYQNIL---GLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 112 (160)
Q Consensus 36 ~~~~i~hv~l~v~D~~~a~~Fy~~~l---G~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi 112 (160)
|..+++||+|.|+|+++|++||+++| |++.... +.+..+...+.|........ ...+..|+
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~----------~~~~~g~~~l~l~~~~~~~~------~~~g~~h~ 67 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNE----------VAYSTGESEIYFKEVDEEIV------RTLGPRHI 67 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeee----------EeeeCCCeeEEEecCCcccc------CCCCceeE
Confidence 45689999999999999999999966 5554311 01112333344433221110 11246899
Q ss_pred EEEe---CCHHHHHHHHHHCCCeEeccC-------CCceEEEEEcCCCCeEEEEeeC
Q 031406 113 CIAI---RDVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 113 ~f~v---~d~~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
||.| +++++++++|+++|+++..++ ++.+.+||+|||||.||+...+
T Consensus 68 af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 68 CYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 9998 689999999999999986432 2347889999999999998754
No 41
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.81 E-value=2.8e-18 Score=111.24 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=78.0
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCc--EEEEEecCCCCCC-CCCCCCCCCceEEEEEeCC
Q 031406 42 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPL-SGRPEHGGRDRHTCIAIRD 118 (160)
Q Consensus 42 hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~--~~~l~~~~~~~~~-~~~~~~~~~~~hi~f~v~d 118 (160)
+..|.|+|++++++||+++|||+.....+ ....+..++. .+.+......... ...+..+.+ .|++|.|+|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~v~d 76 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD------WYVSLRSPDGGVELAFMLPGHETVPAAQYQFQGQG-LILNFEVDD 76 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC------cEEEEecCCCceEEEEccCCCCCCcchhcccCCce-EEEEEEECC
Confidence 67899999999999999999999876421 1244444443 4444433322111 011122333 599999999
Q ss_pred HHHHHHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEEEe
Q 031406 119 VSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 119 ~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~~~ 157 (160)
++++++++.++|+++..++ .|.+.++++|||||+|||+|
T Consensus 77 id~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 77 VDAEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHHHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 9999999999999876442 45689999999999999986
No 42
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.81 E-value=4.4e-18 Score=112.58 Aligned_cols=113 Identities=25% Similarity=0.363 Sum_probs=82.6
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeC---CcEEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIA 115 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g---~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 115 (160)
+|+|++|.|+|++++++||+++|||++....+. ....|+..+ +..+.+........ .....+..|++|.
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~h~~f~ 72 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDPDEHHQIALITGRPAAP----PPGPAGLNHIAFE 72 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecCCCceEEEEEecCCCCC----CCCCCCceEEEEE
Confidence 479999999999999999999999998764331 123555554 23566655433211 1122446899999
Q ss_pred eCCHH---HHHHHHHHCCCeEeccC--CCceEEEEEcCCCCeEEEEeeC
Q 031406 116 IRDVS---KLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 116 v~d~~---~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
|+|++ ++++++.++|+++.... ++++.+|++||+||.|||++..
T Consensus 73 v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 121 (134)
T cd08348 73 VDSLDDLRDLYERLRAAGITPVWPVDHGNAWSIYFRDPDGNRLELFVDT 121 (134)
T ss_pred eCCHHHHHHHHHHHHHCCCCccccCCCCceeEEEEECCCCCEEEEEEcC
Confidence 98765 57899999999886543 3468899999999999999753
No 43
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.81 E-value=9.9e-20 Score=118.79 Aligned_cols=117 Identities=25% Similarity=0.438 Sum_probs=84.0
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecC--CCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCC-CCCCceEEEEE
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARP--HDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPE-HGGRDRHTCIA 115 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~--~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~-~~~~~~hi~f~ 115 (160)
+|+||+|.|+|++++++||+++|||++..... .........++..++..+.+.............. ......|+++.
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSFPEHGGHHIAFL 80 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHHHSHTSEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeeccccccccccccccccceeEEEE
Confidence 68999999999999999999999999987655 1222234466666777787777665443321110 00024577777
Q ss_pred eC---CHHHHHHHHHHCCCeEeccC-----CCceEEEEEcCCCCeEEE
Q 031406 116 IR---DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEF 155 (160)
Q Consensus 116 v~---d~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~ie~ 155 (160)
+. |+++++++|+++|+++...+ .....+|++||+||.|||
T Consensus 81 ~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 81 AFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp ESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred eccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 65 77788999999999987653 234556899999999997
No 44
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.81 E-value=2.5e-18 Score=110.94 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=82.9
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeC-CcEEEEEecCCCCCCCCCCCCCCCceEEEEEe
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 116 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v 116 (160)
++++|+.|.|+|++++++||+++|||++....+ ...|+..+ +..+.+....... .+..|++|.|
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---------~~~~h~~~~v 65 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSEDDHHSLVLTEGDE---------PGVDALGFEV 65 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCCCCcEEEEEEeCCC---------CCceeEEEEc
Confidence 378999999999999999999999999886542 23677766 4444443322211 2368999999
Q ss_pred C---CHHHHHHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEEEeeC
Q 031406 117 R---DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 117 ~---d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
+ ++++++++++++|+++...+ .+++.+|+.||+||.+|+....
T Consensus 66 ~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 66 ASEEDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVEA 115 (117)
T ss_pred CCHHHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEEcc
Confidence 7 68899999999999986643 4568999999999999998653
No 45
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.81 E-value=2.5e-18 Score=111.94 Aligned_cols=110 Identities=20% Similarity=0.281 Sum_probs=80.1
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCC-cEEEEEecCCCCCCCCCCCCCCCceEEE
Q 031406 35 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTC 113 (160)
Q Consensus 35 ~~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 113 (160)
+.+.+|+|+.|.|+|++++++||+++|||++....+ ...|+..++ ...+.+...... ..+..|++
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~~--------~~~~~h~a 67 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTESP--------EAGLGHIA 67 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeCC--------CCceEEEE
Confidence 356799999999999999999999999999876532 235565432 111111111110 13468999
Q ss_pred EEeC---CHHHHHHHHHHCCCeEecc---CCCceEEEEEcCCCCeEEEEee
Q 031406 114 IAIR---DVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 114 f~v~---d~~~~~~~l~~~G~~~~~~---~~g~~~~~~~DPdG~~ie~~~~ 158 (160)
|.++ ++++++++++++|+++... +..+..+||+|||||.||+...
T Consensus 68 f~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 68 WRASSPEALERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred EEcCCHHHHHHHHHHHHHcCCccccccCCCCCcceEEEECCCCCEEEEEEe
Confidence 9997 6888999999999987432 3456789999999999999864
No 46
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.81 E-value=2.3e-18 Score=111.67 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=80.1
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEe-
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI- 116 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v- 116 (160)
.+|+|+.|.|+|++++++||+++|||+...... ...|+..++....++....... ....|++|.+
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~v~ 67 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD------GIVYLRATGSEHHILRLRRSDR--------NRLDVVSFSVA 67 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC------CEEEEECCCCccEEEEeccCCC--------CCCceEEEEeC
Confidence 589999999999999999999999999865432 2356665443333333222111 1257999999
Q ss_pred --CCHHHHHHHHHHCCCeEeccC------CCceEEEEEcCCCCeEEEEee
Q 031406 117 --RDVSKLKMILDKAGISYTLSK------SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 117 --~d~~~~~~~l~~~G~~~~~~~------~g~~~~~~~DPdG~~ie~~~~ 158 (160)
+++++++++++++|+++..++ .+++.++|+||+||.||+++.
T Consensus 68 ~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 68 SRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEec
Confidence 478999999999999986542 356889999999999999864
No 47
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.81 E-value=3e-18 Score=113.69 Aligned_cols=106 Identities=21% Similarity=0.385 Sum_probs=79.0
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCC--c--EEEEEecCCCCCCCCCCCCCCCceEEE
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--E--MIHLMELPNPDPLSGRPEHGGRDRHTC 113 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~--~--~~~l~~~~~~~~~~~~~~~~~~~~hi~ 113 (160)
.+++|+.|.|+|+++|++||+++|||+...... . ...|+..++ . .+.+...... ..++.|++
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~~---------~~g~~hia 67 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPAP---------MAGFHHAA 67 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCCC---------CCcceEEE
Confidence 478999999999999999999999999875432 1 246676642 2 3334332211 24578999
Q ss_pred EEeCCHHHHH---HHHHHCCCeEeccC-----CCceEEEEEcCCCCeEEEEe
Q 031406 114 IAIRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 114 f~v~d~~~~~---~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~ie~~~ 157 (160)
|.|+|++++. ++|+++|+++...+ .+.+.+||+||+||.|||..
T Consensus 68 f~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~ 119 (134)
T cd08360 68 FEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGA 119 (134)
T ss_pred EEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEc
Confidence 9999888766 69999999986432 23466899999999999985
No 48
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.80 E-value=3.2e-18 Score=116.21 Aligned_cols=112 Identities=17% Similarity=0.283 Sum_probs=81.5
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCC---CCCcceEEEEeCCc--EEEEEecCCCCCCCCCCCCCCCceE
Q 031406 37 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHD---KLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRH 111 (160)
Q Consensus 37 ~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~---~~~~~~~~~~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~h 111 (160)
..+|+||+|.|+|++++++||+++|||++....... ......+|+..++. .+.+..... ..++.|
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~----------~~g~~H 76 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEGPG----------PKRIHH 76 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcCCC----------CceeEE
Confidence 357999999999999999999999999986532211 11234566666432 233322211 234789
Q ss_pred EEEEeCCHH---HHHHHHHHCCCeEeccC-----CCceEEEEEcCCCCeEEEEee
Q 031406 112 TCIAIRDVS---KLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 112 i~f~v~d~~---~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~ie~~~~ 158 (160)
++|.|+|++ +++++|+++|+++...+ .+.+.+|++||+||.|||...
T Consensus 77 iaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 77 LMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccC
Confidence 999998665 58999999999987543 356889999999999999753
No 49
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.80 E-value=5e-18 Score=111.18 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=75.5
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCC-----------CCcceEEEEeC----CcEEEEEecCCCCCCCCCC
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWVG----AEMIHLMELPNPDPLSGRP 103 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~g----~~~~~l~~~~~~~~~~~~~ 103 (160)
++.|++|.|+|+++|++||+++|||++......+. ..+..+++..+ +..++|.......+ .
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~----~ 77 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGD----Y 77 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCC----C
Confidence 67999999999999999999999999866443332 11122334332 23555554332211 1
Q ss_pred CCCCCceEEEEEeCCHHHHHHHHHHCCCeEeccCCCceEEEEEcCCCCeEEEEe
Q 031406 104 EHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 104 ~~~~~~~hi~f~v~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~ie~~~ 157 (160)
..|++ |++|.|++. ++.++|+++|+.+...+.+ .++++||||+.|||.-
T Consensus 78 ~~g~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~~--~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 78 ELGND--FLGITIHSK-QAVSNAKKHNWPVTEVEDG--VYEVKAPGGYKFYLID 126 (127)
T ss_pred CCCCC--EEEEEEECH-HHHHHHHHCCCceecCCCC--EEEEECCCCCEEEEec
Confidence 22333 566666666 5569999999999876653 7899999999999963
No 50
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.80 E-value=4.9e-18 Score=116.08 Aligned_cols=112 Identities=21% Similarity=0.324 Sum_probs=76.9
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeC
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 117 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~ 117 (160)
++|+||+|.|+|++++++||+++|||++......+.......|+..++....+..... .+.++.|+||.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~~i~l~~~---------~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVHDTALTGG---------NGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcceEEEecC---------CCCceeEEEEEcC
Confidence 4789999999999999999999999998653322222223355554432222211111 1234689999998
Q ss_pred C---HHHHHHHHHHCCCeE--eccC-----CCceEEEEEcCCCCeEEEEee
Q 031406 118 D---VSKLKMILDKAGISY--TLSK-----SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 118 d---~~~~~~~l~~~G~~~--~~~~-----~g~~~~~~~DPdG~~ie~~~~ 158 (160)
| +++++++|+++|+.. ...+ .+.+.+|++|||||.||+++.
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~ 123 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTG 123 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeec
Confidence 5 777889999999863 2221 234679999999999999863
No 51
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.79 E-value=5.7e-18 Score=110.14 Aligned_cols=104 Identities=25% Similarity=0.371 Sum_probs=78.9
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeCCHHH
Q 031406 42 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK 121 (160)
Q Consensus 42 hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~~~ 121 (160)
...|.|+|+++|++||++ |||+.....+. ...++..++..++|.......+ .....|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~~~~l~l~~~~~~~~-------~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRGDLELHFFAHPDLDP-------ATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcCCEEEEEEecCcCCC-------CCCcceEEEEeCCHHH
Confidence 467899999999999999 99998764432 2344566777788876542211 1123579999999999
Q ss_pred HHHHHHHCCCeEe--------cc---CCCceEEEEEcCCCCeEEEEee
Q 031406 122 LKMILDKAGISYT--------LS---KSGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 122 ~~~~l~~~G~~~~--------~~---~~g~~~~~~~DPdG~~ie~~~~ 158 (160)
++++|+++|+++. .. +.|.+.++|+|||||.|||.|.
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence 9999999999742 11 2567899999999999999884
No 52
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.79 E-value=6.2e-18 Score=113.58 Aligned_cols=106 Identities=17% Similarity=0.326 Sum_probs=78.9
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCc--EEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIA 115 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 115 (160)
.+++|+.|.|+|++++++||+++|||+...... . ...|+..++. .+.+... . ..+..|++|.
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~~~~~~l~~~--~---------~~~~~hiaf~ 66 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSDHHSIAIARG--P---------HPSLNHVAFE 66 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCCcceEEEccC--C---------CCceEEEEEE
Confidence 378999999999999999999999999864321 1 2356666543 2333221 1 1346899999
Q ss_pred eCCHHHHH---HHHHHCCCeEeccC-----CCceEEEEEcCCCCeEEEEeeC
Q 031406 116 IRDVSKLK---MILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 116 v~d~~~~~---~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
|+|++++. ++|+++|+++...+ .+.+.+||+||+||.|||++..
T Consensus 67 v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 67 MPSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred CCCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 99888775 89999999986542 2346789999999999998753
No 53
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.79 E-value=1.3e-17 Score=108.40 Aligned_cols=114 Identities=26% Similarity=0.508 Sum_probs=82.8
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCC-cEEEEEecCCCCCC-CC-CCCCCCCceEEEEEe
Q 031406 40 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPL-SG-RPEHGGRDRHTCIAI 116 (160)
Q Consensus 40 i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~-~~-~~~~~~~~~hi~f~v 116 (160)
+.++.|.|.|++++++||+++|||++... +.+ ...++..++ ..+.++........ .. ......+..|++|.+
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~-~~~----~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 75 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK-EDR----RLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAI 75 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec-CCC----ceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEc
Confidence 46899999999999999999999998763 211 235667665 45555554322110 00 111123468999998
Q ss_pred C--CHHHHHHHHHHCCCeEeccC---CCceEEEEEcCCCCeEEEEee
Q 031406 117 R--DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 117 ~--d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~ie~~~~ 158 (160)
+ |++++++++.++|+++.... .+++.++++|||||+||+++.
T Consensus 76 ~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 76 PAEELAEWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred CHHHHHHHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEecC
Confidence 4 89999999999999886643 467899999999999999863
No 54
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.78 E-value=1.4e-17 Score=109.91 Aligned_cols=107 Identities=19% Similarity=0.331 Sum_probs=79.9
Q ss_pred eeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCc--EEEEEecCCCCCCCCCCCCCCCceEEEEEeCC
Q 031406 41 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 118 (160)
Q Consensus 41 ~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d 118 (160)
+||.|.|+|++++++||+++||++.......+ .....+|+..++. .+.+..... ..+..|++|.|+|
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~hl~~~v~d 69 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDEDHHDLALFPGPE----------RPGLHHVAFEVES 69 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCCcceEEEEcCCC----------CCCeeEEEEEcCC
Confidence 59999999999999999999999987654322 2234567776543 333333211 1346899999998
Q ss_pred HH---HHHHHHHHCCCeEeccC-----CCceEEEEEcCCCCeEEEEee
Q 031406 119 VS---KLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 119 ~~---~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~ie~~~~ 158 (160)
++ +++++++++|+++...+ .+.+.++|+|||||.|||.+.
T Consensus 70 ~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 117 (131)
T cd08343 70 LDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAE 117 (131)
T ss_pred HHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcC
Confidence 75 68899999999987532 235788999999999999875
No 55
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.78 E-value=9.5e-18 Score=109.07 Aligned_cols=107 Identities=23% Similarity=0.306 Sum_probs=78.5
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeC--CcEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 031406 37 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTCI 114 (160)
Q Consensus 37 ~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f 114 (160)
+.++.|+.|.|+|++++++||+++|||++....+ ...|+... .....+...... ..+..|++|
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~hi~~ 66 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTKAP---------VAGLGHIAF 66 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEeeCC---------CCceeEEEE
Confidence 5689999999999999999999999999875422 12455432 222233222111 123689999
Q ss_pred EeC---CHHHHHHHHHHCCCeEecc-----CCCceEEEEEcCCCCeEEEEee
Q 031406 115 AIR---DVSKLKMILDKAGISYTLS-----KSGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 115 ~v~---d~~~~~~~l~~~G~~~~~~-----~~g~~~~~~~DPdG~~ie~~~~ 158 (160)
.|. |+++++++++++|+++... +..++.+|+.|||||.||++..
T Consensus 67 ~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 67 RVRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred ECCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 994 8889999999999998643 1235789999999999999864
No 56
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.78 E-value=1.2e-17 Score=108.70 Aligned_cols=112 Identities=21% Similarity=0.294 Sum_probs=76.5
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeC-CcEEEEEecCCCCC-CCCCCCCCCCceEEEEEeC
Q 031406 40 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDP-LSGRPEHGGRDRHTCIAIR 117 (160)
Q Consensus 40 i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g-~~~~~l~~~~~~~~-~~~~~~~~~~~~hi~f~v~ 117 (160)
++||+|.|+|+++|++||+. |||+....... ...+.+..+ +..+.+........ ....+.......|++|.+.
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~----~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD----EPHVEAVLPGGVRLAWDTVESIRSFTPGWTPTGGHRIALAFLCE 75 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC----CCcEEEEeCCCEEEEEEcccceeeecCCCCCCCCCcEEEEEEcC
Confidence 57999999999999999975 99997643221 112445554 45555543321110 0011112233468888875
Q ss_pred ---CHHHHHHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEEE
Q 031406 118 ---DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFT 156 (160)
Q Consensus 118 ---d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~~ 156 (160)
|+++++++|+++|+++..++ .|.+.++++|||||.|||+
T Consensus 76 ~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 76 TPAEVDALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred CHHHHHHHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEe
Confidence 89999999999999876543 4668899999999999996
No 57
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.78 E-value=2e-17 Score=105.83 Aligned_cols=105 Identities=30% Similarity=0.472 Sum_probs=79.6
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeCCHHHHH
Q 031406 44 GILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKLK 123 (160)
Q Consensus 44 ~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~~~~~ 123 (160)
.|.|+|++++++||+++|||+...... . ....++..++..++|......... ......|++|.++|+++++
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~--~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--E--PGYAFLSRGGAQLMLSEHDGDEPV-----PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--C--CcEEEEEeCCEEEEEeccCCCCCC-----CCCCcEEEEEEeCCHHHHH
Confidence 689999999999999999999876543 1 123556667777777665433211 1233468999999999999
Q ss_pred HHHHHCCCe-Eecc----CCCceEEEEEcCCCCeEEEEe
Q 031406 124 MILDKAGIS-YTLS----KSGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 124 ~~l~~~G~~-~~~~----~~g~~~~~~~DPdG~~ie~~~ 157 (160)
+++.++|+. +..+ ..+.+.++++||+||.|||+|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcccEEEEEECCCCCEEEecC
Confidence 999999998 4433 235588999999999999986
No 58
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.78 E-value=1.4e-17 Score=108.89 Aligned_cols=112 Identities=17% Similarity=0.120 Sum_probs=77.4
Q ss_pred eeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeC-CcEEEEEecCCCCC--CCCCC-CCCCCceEEEEEe
Q 031406 41 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG-AEMIHLMELPNPDP--LSGRP-EHGGRDRHTCIAI 116 (160)
Q Consensus 41 ~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g-~~~~~l~~~~~~~~--~~~~~-~~~~~~~hi~f~v 116 (160)
.+++|.|+|+++|++||+. |||+.......+. ..++..+ +..+.+........ ..... .......|++|.|
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~----~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~v 76 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK----AACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLSA 76 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCCC----eEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEeC
Confidence 6899999999999999987 8999764333222 2444454 45666655321100 00000 1123347999999
Q ss_pred C---CHHHHHHHHHHCCCeEeccC---CCceEEEEEcCCCCeEEEEe
Q 031406 117 R---DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 117 ~---d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~ie~~~ 157 (160)
+ ++++++++++++|+++..++ .+.+.+||+|||||+||++.
T Consensus 77 ~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 77 DSREEVDELVEKALAAGGKEFREPQDHGFMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred CCHHHHHHHHHHHHHCCCcccCCcccCCceEEEEEECCCCCEEEEEE
Confidence 8 58899999999999987644 34467899999999999985
No 59
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=1.2e-17 Score=107.71 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=75.7
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeCCHHHH
Q 031406 43 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 122 (160)
Q Consensus 43 v~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~~~~ 122 (160)
..|.|+|+++|++||++ |||+.....+ ...++..++..+.+........ ....+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~~~~l~l~~~~~~~~--------~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLGNCAFYLQDYYVKDW--------AENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcCCEEEEeecCCCccc--------ccCCEEEEEECCHHHH
Confidence 56889999999999988 9999976532 2366777777766644322111 1135799999999999
Q ss_pred HHHHHHCCCeEe---------ccCCCceEEEEEcCCCCeEEEEe
Q 031406 123 KMILDKAGISYT---------LSKSGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 123 ~~~l~~~G~~~~---------~~~~g~~~~~~~DPdG~~ie~~~ 157 (160)
+++|+++|+++. ..++|.+.++|+|||||.|+|.|
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCCcEEEEEECCCccEEEeeC
Confidence 999999998642 12357799999999999999975
No 60
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.77 E-value=2e-17 Score=105.29 Aligned_cols=100 Identities=27% Similarity=0.506 Sum_probs=72.7
Q ss_pred EEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCc----EEEEEecCCCCCCCCCCCCCCCceEEEEEeCCHH
Q 031406 45 ILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 120 (160)
Q Consensus 45 l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~----~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~~ 120 (160)
|.|+|++++++||+++|||++....+ ....+..+.. ...+........ ...+..|++|.|+|++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~dv~ 68 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP------DYVDFSLGFRFHDGVIEFLQFPDPPG------PPGGGFHLCFEVEDVD 68 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET------SEEEEEETEEEEEEEEEEEEEESSSS------SSSSEEEEEEEESHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC------CeEEEEeccchhhhhHHHccCCcccc------CCCceeEEEEEEcCHH
Confidence 68999999999999999999988433 2244444321 233443332111 1244689999999999
Q ss_pred HHHHHHHHCCCeEecc----CCCceEEEEEcCCCCeEEEE
Q 031406 121 KLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 156 (160)
Q Consensus 121 ~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~ie~~ 156 (160)
+++++++++|+++..+ +.+.+.+++.|||||.|||+
T Consensus 69 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 69 ALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 9999999999998654 35669999999999999986
No 61
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=2e-17 Score=107.83 Aligned_cols=111 Identities=22% Similarity=0.304 Sum_probs=75.0
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCC--CCCC-CCCCCCceEEEE--Ee
Q 031406 42 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDP--LSGR-PEHGGRDRHTCI--AI 116 (160)
Q Consensus 42 hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~--~~~~-~~~~~~~~hi~f--~v 116 (160)
||.|.|+|+++|++||+++|||++..... . ...+..++..+.+........ .... ........|++| .+
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 75 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE--T----WVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSE 75 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC--C----cccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeH
Confidence 89999999999999999999999854321 1 122334445555443322111 0001 111122457654 56
Q ss_pred CCHHHHHHHHHHCCCeEeccC--------CCceEEEEEcCCCCeEEEEee
Q 031406 117 RDVSKLKMILDKAGISYTLSK--------SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~~--------~g~~~~~~~DPdG~~ie~~~~ 158 (160)
+|+++++++|+++|+++..++ .+.+.+|++|||||.|||..+
T Consensus 76 ~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 125 (125)
T cd08357 76 EEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKAF 125 (125)
T ss_pred HHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEeeC
Confidence 799999999999999987432 235889999999999999864
No 62
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.77 E-value=2.8e-17 Score=103.98 Aligned_cols=108 Identities=30% Similarity=0.442 Sum_probs=85.6
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeCCHHH
Q 031406 42 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSK 121 (160)
Q Consensus 42 hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~~~ 121 (160)
|++|.|+|++++.+||+++|||+....... ......++..++..+++....+.... ..+....|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~~~~i~l~~~~~~~~~----~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLGGTRLELFEGDEPAPA----PSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecCCceEEEecCCCCCCc----ccCCCeeEEEEECCCHHH
Confidence 789999999999999999999998776532 11244556667778888887654321 223446899999999999
Q ss_pred HHHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEE
Q 031406 122 LKMILDKAGISYTLSK----SGRPAIFTRDPDANALEF 155 (160)
Q Consensus 122 ~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~ 155 (160)
+++++.++|+.+...+ .+.+.+++.||+|+.|||
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence 9999999999887653 457899999999999986
No 63
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.76 E-value=5.8e-17 Score=104.01 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=74.8
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeC---CcEEEEEecCCCCCCCCCCCCCCCceEEEEEeCC
Q 031406 42 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG---AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 118 (160)
Q Consensus 42 hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g---~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d 118 (160)
...|.|+|++++++||+++|||+..... . ...++..+ +..+.+....... ....|++|.|+|
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~v~d 67 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMDH---G---WIATFASPQNMTVQVSLATEGGTA---------TVVPDLSIEVDD 67 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEcC---C---ceEEEeecCCCCcEEEEecCCCCC---------CCCCEEEEEeCC
Confidence 3578899999999999999999976421 1 12334432 2344444332111 124699999999
Q ss_pred HHHHHHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEEEee
Q 031406 119 VSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 119 ~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~~~~ 158 (160)
+++++++|+++|+++..++ +|.+.+++.||+||+|++++.
T Consensus 68 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 68 VDAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEc
Confidence 9999999999999987643 355889999999999999975
No 64
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.76 E-value=5.9e-17 Score=104.25 Aligned_cols=106 Identities=22% Similarity=0.262 Sum_probs=78.0
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeCC---
Q 031406 43 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD--- 118 (160)
Q Consensus 43 v~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d--- 118 (160)
+.|.|+|++++++||+++||++.....+ ....+.. ++..+.++........ .....+..|++|.+++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP------TFALFVLGSGVKLGLWSRHTVEPA---SDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC------ceEEEEeCCCcEEEEeeccccCCC---CCCCCCceEEEEEcCCHHH
Confidence 6789999999999999999999765322 1233444 4567777765443211 1112335799999985
Q ss_pred HHHHHHHHHHCCCeEeccC---CCceEEEEEcCCCCeEEEEe
Q 031406 119 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 119 ~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~ie~~~ 157 (160)
++++++++.++|+++..++ ..++.++|+|||||.||++.
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFGYTFVALDPDGHRLRVFA 114 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCccEEEEECCCCCEEEeeC
Confidence 8889999999999987653 33578999999999999973
No 65
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.76 E-value=8.6e-17 Score=104.45 Aligned_cols=107 Identities=22% Similarity=0.386 Sum_probs=76.8
Q ss_pred eeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeCC--
Q 031406 41 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD-- 118 (160)
Q Consensus 41 ~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d-- 118 (160)
.|+.|.|+|++++.+||+++||++.....+ . ...| ..++..+.+......... ..+..|++|.+++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~---~~~~-~~~~~~~~~~~~~~~~~~------~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD--D---YAKF-LLEDPRLNFVLNERPGAP------GGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC--C---eeEE-EecCCceEEEEecCCCCC------CCCeeEEEEEeCCHH
Confidence 589999999999999999999998765422 1 1233 333334444333222111 0346899999987
Q ss_pred -HHHHHHHHHHCCCeEeccCC------CceEEEEEcCCCCeEEEEeeC
Q 031406 119 -VSKLKMILDKAGISYTLSKS------GRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 119 -~~~~~~~l~~~G~~~~~~~~------g~~~~~~~DPdG~~ie~~~~~ 159 (160)
++++++++.++|+++...+. ..+.+|++||+||.|||++.-
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 78899999999999876431 246799999999999999753
No 66
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.75 E-value=2.9e-17 Score=109.93 Aligned_cols=104 Identities=17% Similarity=0.242 Sum_probs=76.3
Q ss_pred eeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCC-cEEEEEecCCCCCCCCCCCCCCCceEEEEEeCCH
Q 031406 41 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA-EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 119 (160)
Q Consensus 41 ~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~ 119 (160)
.||.|.|+|++++++||+++|||++...... ...|+...+ ...+.+..... ...+++|++|.|+|+
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~~--------~~~gl~Hiaf~v~~~ 67 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGPA--------SSSHFHHVNFMVTDI 67 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeeccC--------CCCceEEEEEECCCH
Confidence 4899999999999999999999998764321 346666543 22233222111 124589999999865
Q ss_pred ---HHHHHHHHHCCCeEeccC-----CCceEEEEEcCCCCeEEEEe
Q 031406 120 ---SKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 120 ---~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~ie~~~ 157 (160)
++++++|+++|+++...+ .+.+.+|++||+|+.|||..
T Consensus 68 ~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~ 113 (141)
T cd07258 68 DDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSF 113 (141)
T ss_pred HHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEe
Confidence 567999999999986432 34578999999999999975
No 67
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=8.7e-17 Score=104.81 Aligned_cols=107 Identities=23% Similarity=0.320 Sum_probs=75.9
Q ss_pred eeeEEEEeCCHHHHHHHHHHh---cCCEEeeecCCCCCCcceEEEEeC--CcEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 031406 40 VHHVGILCENLERSLEFYQNI---LGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTCI 114 (160)
Q Consensus 40 i~hv~l~v~D~~~a~~Fy~~~---lG~~~~~~~~~~~~~~~~~~~~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f 114 (160)
+.|++|.|+|+++|++||+++ ||++...... . ...++..+ +..+.+........ +. .++..|++|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~~~~----~~-~~~~~hi~f 70 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--P---GAVGYGKGGGGPDFWVTKPFDGEP----AT-AGNGTHVAF 70 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--C---ceeEeccCCCCceEEEeccccCCC----CC-CCCceEEEE
Confidence 579999999999999999998 6998765431 1 12334443 45666655432111 11 122479999
Q ss_pred EeCC---HHHHHHHHHHCCCeEeccC-------CCceEEEEEcCCCCeEEEE
Q 031406 115 AIRD---VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFT 156 (160)
Q Consensus 115 ~v~d---~~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~ie~~ 156 (160)
.|++ ++++++++.++|+.+...+ .+.+.+||+|||||.|||+
T Consensus 71 ~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 71 AAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred ECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 9986 7888999999999886543 1235789999999999996
No 68
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.75 E-value=5.5e-17 Score=121.26 Aligned_cols=114 Identities=22% Similarity=0.352 Sum_probs=79.5
Q ss_pred CCceeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCc-ceEEEEeCCcE--EEEEecCCCCCCCCCCCCCCCc
Q 031406 33 RDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPY-RGAWLWVGAEM--IHLMELPNPDPLSGRPEHGGRD 109 (160)
Q Consensus 33 ~~~~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~-~~~~~~~g~~~--~~l~~~~~~~~~~~~~~~~~~~ 109 (160)
..+.+.+|+||+|.|+|++++++||+++|||+.......+.... ...|+..++.. +.+... + ..+.+
T Consensus 139 ~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~g~~ 208 (303)
T TIGR03211 139 RGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNKAHDIAFVGD---------P-EPGKL 208 (303)
T ss_pred CCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCCCcccceecC---------C-CCCce
Confidence 34557899999999999999999999999999865432222111 23455543221 111110 1 11337
Q ss_pred eEEEEEeCC---HHHHHHHHHHCCCeEeccC-----CCceEEEEEcCCCCeEEEE
Q 031406 110 RHTCIAIRD---VSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFT 156 (160)
Q Consensus 110 ~hi~f~v~d---~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~ie~~ 156 (160)
+|+||.|+| +++++++|+++|+++...+ ..++.+||+|||||+||+.
T Consensus 209 ~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~ 263 (303)
T TIGR03211 209 HHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETF 263 (303)
T ss_pred EEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEe
Confidence 899999996 5557889999999986543 1357899999999999997
No 69
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.74 E-value=1.4e-16 Score=102.38 Aligned_cols=101 Identities=26% Similarity=0.398 Sum_probs=71.6
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCc--EEEEEecCCCCCCCCCCCCCCCceE--EE
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAE--MIHLMELPNPDPLSGRPEHGGRDRH--TC 113 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~--~~~l~~~~~~~~~~~~~~~~~~~~h--i~ 113 (160)
+|+||.|.|.|++++++||+ .|||++....+ ..++.. ++. .+.+.... . ....| ++
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~ 62 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEGD-------GLELRTAGNDHRWARLLEGA--R---------KRLAYLSFG 62 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeecC-------ceEEEecCCCceEEEeecCC--C---------CceeeEEEE
Confidence 68999999999999999997 69999865321 133333 322 23332211 1 11344 45
Q ss_pred EEeCCHHHHHHHHHHCCCeEeccC--CCceEEEEEcCCCCeEEEEee
Q 031406 114 IAIRDVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 114 f~v~d~~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~ie~~~~ 158 (160)
+.++|+++++++|.++|+++...+ .+.+.+||.||+||.|||...
T Consensus 63 ~~~~d~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 63 IFEDDFAAFARHLEAAGVALAAAPPGADPDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred eEhhhHHHHHHHHHHcCCceecCCCcCCCCEEEEECCCCCEEEEecC
Confidence 556799999999999999986543 345689999999999999864
No 70
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.73 E-value=1.7e-16 Score=102.85 Aligned_cols=110 Identities=20% Similarity=0.277 Sum_probs=78.2
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCC--CCCCCceEEEEEe---C
Q 031406 43 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRP--EHGGRDRHTCIAI---R 117 (160)
Q Consensus 43 v~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~--~~~~~~~hi~f~v---~ 117 (160)
|.|.|+|++++.+||+++|||++... ..+ ...++..++..+++++..........+ ..+....|++|.+ +
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSAD-SND----GVAFFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEE 76 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceeccc-CCC----ceEEEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHH
Confidence 68999999999999999999998654 111 235666777777777643211110001 1122234566655 5
Q ss_pred CHHHHHHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEEEe
Q 031406 118 DVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 118 d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~~~ 157 (160)
|++++++++++.|+++..++ .+++.++++||+||+|||..
T Consensus 77 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 77 EVDAVLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence 89999999999999987543 35789999999999999975
No 71
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.73 E-value=1.8e-16 Score=117.69 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=79.7
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEe
Q 031406 37 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI 116 (160)
Q Consensus 37 ~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v 116 (160)
+.++.|++|.|+|+++|++||+++|||+...... . ...|+..++....+....... ..+.|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--N---DALYLRLDSRAHRIAVHPGES---------DDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--C---ceEEEEcCCCceEEEEEECCc---------CCeeeEeeee
Confidence 3589999999999999999999999998754322 1 124556654333332222211 2257899999
Q ss_pred CC---HHHHHHHHHHCCCeEeccC-------CCceEEEEEcCCCCeEEEEe
Q 031406 117 RD---VSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 117 ~d---~~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~ie~~~ 157 (160)
++ ++++.++|+++|+++...+ .+++.++|+|||||.||++.
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~ 117 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYY 117 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEE
Confidence 98 8889999999999987532 34578999999999999986
No 72
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.72 E-value=3.3e-16 Score=116.54 Aligned_cols=113 Identities=27% Similarity=0.428 Sum_probs=78.9
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCc--EEEEEecCCCCCCCCCCCCCCCceEE
Q 031406 35 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE--MIHLMELPNPDPLSGRPEHGGRDRHT 112 (160)
Q Consensus 35 ~~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~hi 112 (160)
+.+.+++||+|.|+|++++++||+++|||++......+.......|+..++. .+.+.. ..+.+++|+
T Consensus 132 ~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~Hi 200 (294)
T TIGR02295 132 VSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGGVHDIALTN-----------GNGPRLHHI 200 (294)
T ss_pred ccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCCcCceEeec-----------CCCCceeeE
Confidence 3567999999999999999999999999998754332222222345544322 122211 112457999
Q ss_pred EEEeCC---HHHHHHHHHHCCCe--EeccC-----CCceEEEEEcCCCCeEEEEee
Q 031406 113 CIAIRD---VSKLKMILDKAGIS--YTLSK-----SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 113 ~f~v~d---~~~~~~~l~~~G~~--~~~~~-----~g~~~~~~~DPdG~~ie~~~~ 158 (160)
||.|+| +++++++|+++|++ +...+ .+...+|++||+||+||+++.
T Consensus 201 af~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~ 256 (294)
T TIGR02295 201 AYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTG 256 (294)
T ss_pred EEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEec
Confidence 999998 45568999999997 44332 124679999999999999864
No 73
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.71 E-value=6.1e-16 Score=114.81 Aligned_cols=113 Identities=15% Similarity=0.262 Sum_probs=79.5
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCC--C-CCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEE
Q 031406 37 VVSVHHVGILCENLERSLEFYQNILGLEINEARPH--D-KLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 113 (160)
Q Consensus 37 ~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~--~-~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 113 (160)
+.+|+||+|.|+|++++++||+++|||++...... + ...+..+|+..++....+.....+ ...+++|+|
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~~~~--------~~~~~~Hia 211 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFAAGP--------SEKRLNHLM 211 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEecCC--------CCCceEEEE
Confidence 46899999999999999999999999998654211 1 111234677665433222211111 123478999
Q ss_pred EEeCCHHH---HHHHHHHCCCeEecc-C---CCceEEEEEcCCCCeEEEEe
Q 031406 114 IAIRDVSK---LKMILDKAGISYTLS-K---SGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 114 f~v~d~~~---~~~~l~~~G~~~~~~-~---~g~~~~~~~DPdG~~ie~~~ 157 (160)
|.|+|+++ ++++|+++|+....+ . .+.+++|++||+|++||+..
T Consensus 212 f~v~d~~~v~~~~~~l~~~G~~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 212 LEVDTLDDVGLALDRVDADGIVASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred EEcCCHHHHHHHHHHHHHCCCEEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 99998777 799999999933322 1 34678999999999999975
No 74
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.69 E-value=8.9e-16 Score=114.23 Aligned_cols=107 Identities=21% Similarity=0.278 Sum_probs=79.6
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeC--CcEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 031406 37 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTCI 114 (160)
Q Consensus 37 ~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f 114 (160)
+.+++||.|.|+|++++++||+++|||++....+ ...++... .....+...... ..+..|++|
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~~~---------~~~~~hiaf 66 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTKAP---------SAALSYIGF 66 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeeeCC---------CcCccEEEE
Confidence 5789999999999999999999999999876432 12445432 112222221111 123689999
Q ss_pred EeC---CHHHHHHHHHHCCCeEeccC--CCceEEEEEcCCCCeEEEEee
Q 031406 115 AIR---DVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 115 ~v~---d~~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~ie~~~~ 158 (160)
.|+ |+++++++|+++|+++...+ .+.+.+||+|||||.|||++.
T Consensus 67 ~v~~~~dl~~~~~~l~~~Gv~v~~~~~~~~~~~~~~~DPdG~~iEl~~~ 115 (294)
T TIGR02295 67 RVSKEEDLDKAADFFQKLGHPVRLVRDGGQPEALRVEDPFGYPIEFYFE 115 (294)
T ss_pred EeCCHHHHHHHHHHHHhcCCcEEeecCCCCceEEEEECCCCCEEEEEEc
Confidence 997 78899999999999987543 346899999999999999873
No 75
>PLN02300 lactoylglutathione lyase
Probab=99.69 E-value=1.2e-15 Score=113.34 Aligned_cols=120 Identities=20% Similarity=0.222 Sum_probs=87.2
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCc----EEEEEecCCCCCCCCCCCCCCCceE
Q 031406 36 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE----MIHLMELPNPDPLSGRPEHGGRDRH 111 (160)
Q Consensus 36 ~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~----~~~l~~~~~~~~~~~~~~~~~~~~h 111 (160)
+..++.|+.|.|+|++++.+||+++|||+.......+...+...++..++. .+++...... ..+..+.+..|
T Consensus 151 ~~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~----~~~~~g~~~~~ 226 (286)
T PLN02300 151 TPEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGV----TEYTKGNAYAQ 226 (286)
T ss_pred CCCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCC----CccccCCceeE
Confidence 345789999999999999999999999998754333334455566554321 3333221111 11223455789
Q ss_pred EEEEeCCHHHHHHHHHHCCCeEeccC---C--CceEEEEEcCCCCeEEEEeeC
Q 031406 112 TCIAIRDVSKLKMILDKAGISYTLSK---S--GRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 112 i~f~v~d~~~~~~~l~~~G~~~~~~~---~--g~~~~~~~DPdG~~ie~~~~~ 159 (160)
++|.|+|++++++++.++|+++..++ . +++.++|+||||+.++|.+..
T Consensus 227 i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~ 279 (286)
T PLN02300 227 IAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNI 279 (286)
T ss_pred EEEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccc
Confidence 99999999999999999999997653 2 247899999999999998753
No 76
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.68 E-value=2.9e-16 Score=100.60 Aligned_cols=94 Identities=26% Similarity=0.396 Sum_probs=76.7
Q ss_pred eeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCC--cEEEEEecCCCCCCCCCCCCCCCceEEEEEeCC
Q 031406 41 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGA--EMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 118 (160)
Q Consensus 41 ~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d 118 (160)
+||+|.|+|+++|++||+++||++.......+....+..++..++ .+++|++......... ..+.+++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~~~--~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSPLD--RGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCHHH--HTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCcccc--cCCCCEEEEEEEeCC
Confidence 699999999999999999999998776555556667778888876 5899999876542111 256779999999999
Q ss_pred HHHHHHHHHHCCCeEecc
Q 031406 119 VSKLKMILDKAGISYTLS 136 (160)
Q Consensus 119 ~~~~~~~l~~~G~~~~~~ 136 (160)
++++.++|+++|+++...
T Consensus 79 ~d~~~~~l~~~G~~~~~~ 96 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDE 96 (109)
T ss_dssp HHHHHHHHHHTTECEEEC
T ss_pred HHHHHHHHHHCCCEEccc
Confidence 999999999999998653
No 77
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.68 E-value=2e-15 Score=112.84 Aligned_cols=107 Identities=19% Similarity=0.258 Sum_probs=78.4
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CC-cEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 031406 37 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GA-EMIHLMELPNPDPLSGRPEHGGRDRHTCI 114 (160)
Q Consensus 37 ~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~-~~~~l~~~~~~~~~~~~~~~~~~~~hi~f 114 (160)
+.+++|+.|.|+|++++++||+++|||++...... .+++.. ++ ....+...... ..++.|++|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~---------~~g~~hiaf 66 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ------RVYLKAWDEWDHYSVILTEAD---------TAGLDHMAF 66 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc------eEEEEeccccccceEeeccCC---------CCceeEEEE
Confidence 45899999999999999999999999998764321 234443 21 11122111111 123689999
Q ss_pred EeC---CHHHHHHHHHHCCCeEeccC-----CCceEEEEEcCCCCeEEEEee
Q 031406 115 AIR---DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 115 ~v~---d~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~ie~~~~ 158 (160)
.|+ |+++++++|+++|+++...+ ..++.+||+|||||.|||++.
T Consensus 67 ~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~ 118 (303)
T TIGR03211 67 KVESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAE 118 (303)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEc
Confidence 998 78899999999999986532 346789999999999999974
No 78
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.66 E-value=7.1e-15 Score=95.16 Aligned_cols=115 Identities=20% Similarity=0.235 Sum_probs=82.4
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCc-EE-EEEecCCCCCCCCCCCCCCCceEEE
Q 031406 36 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MI-HLMELPNPDPLSGRPEHGGRDRHTC 113 (160)
Q Consensus 36 ~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~-~~-~l~~~~~~~~~~~~~~~~~~~~hi~ 113 (160)
+...+.|..|.++|++++++||+++|||+......... ...+.+..++. .. .+...+.. .+ +...-++.
T Consensus 6 ~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~--~~y~~f~~~~~~~gG~l~~~~~~-----~p--~~~~~~iy 76 (127)
T COG3324 6 EKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGE--MRYAVFPADGAGAGGGLMARPGS-----PP--GGGGWVIY 76 (127)
T ss_pred cCCccEEEeeecCCHHHHHHHHHHhhCceecccccCCC--ceEEEEECCCccccceeccCCcC-----CC--CCCCEEEE
Confidence 44578999999999999999999999999876433211 22233433331 11 11111111 11 12346789
Q ss_pred EEeCCHHHHHHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEEEeeC
Q 031406 114 IAIRDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 114 f~v~d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
|.|+|++++.+++.++|.++..++ ++++.+.+.||+||+|.++++.
T Consensus 77 ~~v~did~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 77 FAVDDIDATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred EecCChHHHHHHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEeecC
Confidence 999999999999999999998764 4789999999999999999864
No 79
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=8.5e-15 Score=96.50 Aligned_cols=119 Identities=18% Similarity=0.296 Sum_probs=81.5
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCC----CCC-CCCCCceEEE
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLS----GRP-EHGGRDRHTC 113 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~----~~~-~~~~~~~hi~ 113 (160)
++.++.|.+.+..+...||..+||++.....+.+..+.. .|+......++|...-+....+ ..+ ..+.+++|||
T Consensus 42 r~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~-v~~~~~~~~~ELthn~Gtes~~~~~~~ngN~~prGfgHIc 120 (170)
T KOG2944|consen 42 RVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVS-VFVFSRNAKLELTHNWGTESPPDQAYLNGNKEPRGFGHIC 120 (170)
T ss_pred hhccceeechhhhhHhhhHHHhhcccccccCccCCCCCc-eEEecccCceeeecCCCCCCCcchhhcCCCCCCCccceEE
Confidence 455666666666666666666666665544443333222 6777777778887765543332 111 2234679999
Q ss_pred EEeCCHHHHHHHHHHCCCeEeccC-CCc--eEEEEEcCCCCeEEEEee
Q 031406 114 IAIRDVSKLKMILDKAGISYTLSK-SGR--PAIFTRDPDANALEFTQV 158 (160)
Q Consensus 114 f~v~d~~~~~~~l~~~G~~~~~~~-~g~--~~~~~~DPdG~~ie~~~~ 158 (160)
|+|+|+++++++|+++|+++...+ +|. ..+++.||||+-|||...
T Consensus 121 i~V~di~sac~~lkekGV~f~Kk~~dGk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 121 IEVDDINSACERLKEKGVRFKKKLKDGKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred EEeCCHHHHHHHHHHhCceeeecCCCccccceeEEECCCCCeEEEeec
Confidence 999999999999999999987654 332 468999999999999764
No 80
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.57 E-value=1.1e-13 Score=86.49 Aligned_cols=112 Identities=25% Similarity=0.439 Sum_probs=78.4
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeC--CcEEEEEecCCCCCCCCCC--CCCCCceEEE-
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRP--EHGGRDRHTC- 113 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g--~~~~~l~~~~~~~~~~~~~--~~~~~~~hi~- 113 (160)
.+-|++|.|+|++++++||.++||+....... .|+.++ +.|+.........+....+ ..+--..|++
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd--------~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD--------TWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccc--------eEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 46899999999999999999999998655433 555553 4454444433332221111 1122235664
Q ss_pred -EEeCCHHHHHHHHHHCCCeEeccC--------CCceEEEEEcCCCCeEEEEee
Q 031406 114 -IAIRDVSKLKMILDKAGISYTLSK--------SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 114 -f~v~d~~~~~~~l~~~G~~~~~~~--------~g~~~~~~~DPdG~~ie~~~~ 158 (160)
+.++|.-++.++|.++|+.+..++ ..++.+++.||.||.+|+..+
T Consensus 76 Vl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~f 129 (138)
T COG3565 76 VLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGF 129 (138)
T ss_pred EEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecc
Confidence 456799999999999999886653 347899999999999999753
No 81
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.53 E-value=4.1e-13 Score=96.20 Aligned_cols=113 Identities=25% Similarity=0.378 Sum_probs=84.3
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCc-EEEEEecCCCCCCCCCCCCCCCceEEEEE
Q 031406 37 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAE-MIHLMELPNPDPLSGRPEHGGRDRHTCIA 115 (160)
Q Consensus 37 ~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~hi~f~ 115 (160)
...+..++|.|+|++.+..||++++|+.+..+.. +..-+..|+. -+.|.+.+..... +....++.|++|.
T Consensus 8 ~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg~~LL~L~q~~~a~~~---~~~~aGLyH~AfL 78 (265)
T COG2514 8 PTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGGTPLLTLEQFPDARRP---PPRAAGLYHTAFL 78 (265)
T ss_pred CcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCCEEEEEEEeCCCCCCC---Cccccceeeeeee
Confidence 3578999999999999999999999999887544 2355667766 3444444433221 1223557999999
Q ss_pred eC---CHHHHHHHHHHCCCeEecc--CCCceEEEEEcCCCCeEEEEee
Q 031406 116 IR---DVSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 116 v~---d~~~~~~~l~~~G~~~~~~--~~g~~~~~~~DPdG~~ie~~~~ 158 (160)
++ |+..+..++.+.|+.+... ..-...+||.||+||-||++-.
T Consensus 79 lP~r~~L~~~l~hl~~~~~~l~Ga~DH~vSEAlYl~DPEGNGIEiYaD 126 (265)
T COG2514 79 LPTREDLARVLNHLAEEGIPLVGASDHLVSEALYLEDPEGNGIEIYAD 126 (265)
T ss_pred cCCHHHHHHHHHHHHhcCCcccccCcchhheeeeecCCCCCeEEEEec
Confidence 99 5667788888999988633 2346789999999999999864
No 82
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.49 E-value=6.2e-13 Score=84.43 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=81.1
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCC---CCCCCceEEEEE
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRP---EHGGRDRHTCIA 115 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~---~~~~~~~hi~f~ 115 (160)
....|.|.|+|++++++||+. |||+.......+. ....+..+...+.|++..........+ ...+.-..+|+.
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ls 78 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISLS 78 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEec
Confidence 346789999999999999986 9999876554333 223344455566666554332211111 122334568888
Q ss_pred eC---CHHHHHHHHHHCCCeEeccC---CCceEEEEEcCCCCeEEEEeeCC
Q 031406 116 IR---DVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQVDG 160 (160)
Q Consensus 116 v~---d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~ie~~~~~~ 160 (160)
+. +++++.+++.+.|.+...++ +.-+..-|.|||||.||+...+|
T Consensus 79 ~~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 79 AGSREEVDELVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred cCcHHHHHHHHHHHHHcCCCCCCCccccccccceeeeCCCCCeEEEEEeCH
Confidence 87 67888999999999886543 23466788999999999998764
No 83
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.45 E-value=6.7e-13 Score=93.09 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=71.4
Q ss_pred eeeeeEEEEeC--CHHHHHHHHHHhcCCEEeeecCCCC--CCcceEEEEeC--CcEEEEEecCCC--CCCCC---CCCCC
Q 031406 38 VSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDK--LPYRGAWLWVG--AEMIHLMELPNP--DPLSG---RPEHG 106 (160)
Q Consensus 38 ~~i~hv~l~v~--D~~~a~~Fy~~~lG~~~~~~~~~~~--~~~~~~~~~~g--~~~~~l~~~~~~--~~~~~---~~~~~ 106 (160)
.+++||++.|+ |+++++.||+++|||+.......+. .......+..+ +..+.|.+.... .+... ....|
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~G 81 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYGG 81 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhCC
Confidence 47899999999 9999999999999999876543222 23334455543 456777765542 11111 11236
Q ss_pred CCceEEEEEeCCHHHHHHHHHHCCCeEecc
Q 031406 107 GRDRHTCIAIRDVSKLKMILDKAGISYTLS 136 (160)
Q Consensus 107 ~~~~hi~f~v~d~~~~~~~l~~~G~~~~~~ 136 (160)
.++.||||.|+|+++++++|+++|+++...
T Consensus 82 ~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~ 111 (191)
T cd07250 82 AGVQHIALATDDIFATVAALRARGVEFLPI 111 (191)
T ss_pred CceeEEEEECCCHHHHHHHHHHcCCeeccC
Confidence 678999999999999999999999998654
No 84
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.43 E-value=1.5e-11 Score=80.82 Aligned_cols=108 Identities=18% Similarity=0.135 Sum_probs=76.4
Q ss_pred EEEEe-CCHHHHHHHHHHhcCCEEeeecCCC----------CCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceE
Q 031406 43 VGILC-ENLERSLEFYQNILGLEINEARPHD----------KLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRH 111 (160)
Q Consensus 43 v~l~v-~D~~~a~~Fy~~~lG~~~~~~~~~~----------~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~h 111 (160)
..|.+ .|.++|++||+++||+++......+ ...+....+..++..+.+......... ..+...+
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~~~-----~~~~~~~ 77 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGFPF-----TFGNGIS 77 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCCCC-----CCCCCEE
Confidence 45667 9999999999999999988654311 122235667778887777665433221 1122367
Q ss_pred EEEEeCC---HHHHHHHHHHCCCeEecc----CCCceEEEEEcCCCCeEEEE
Q 031406 112 TCIAIRD---VSKLKMILDKAGISYTLS----KSGRPAIFTRDPDANALEFT 156 (160)
Q Consensus 112 i~f~v~d---~~~~~~~l~~~G~~~~~~----~~g~~~~~~~DPdG~~ie~~ 156 (160)
+++.|+| +++++++|++.| ++..+ ++|.+.++++||+|+.|+|.
T Consensus 78 l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 78 LSVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEEECCCHHHHHHHHHHHhcCC-eEeccchhcCcccccEEEECCCCCEEEeC
Confidence 8999886 677889987766 66544 35778999999999999873
No 85
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.36 E-value=1.2e-10 Score=76.75 Aligned_cols=114 Identities=19% Similarity=0.163 Sum_probs=86.0
Q ss_pred EEEEeC-CHHHHHHHHHHhcCCEEeeecCCCC----------CCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceE
Q 031406 43 VGILCE-NLERSLEFYQNILGLEINEARPHDK----------LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRH 111 (160)
Q Consensus 43 v~l~v~-D~~~a~~Fy~~~lG~~~~~~~~~~~----------~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~h 111 (160)
..|..+ |.++|.+||+++||.+.....+... ...-.+.+.+++..+.+.......... ..++....
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~~~---~~~~~s~~ 80 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMGAT---EGGGTSLS 80 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccCcc---cCCCeeEE
Confidence 456778 9999999999999999887655444 344556788888777776654433211 11222356
Q ss_pred EEEEeCCHHHHHHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEEEeeC
Q 031406 112 TCIAIRDVSKLKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 112 i~f~v~d~~~~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
|.+.++|++++++++.+.|+++..+. +|.++..++||.|+.|-|....
T Consensus 81 l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 81 LDLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred EEEEehHHHHHHHHHHhcCCeEEecchhcCcccceEEEECCCCCEEEEecCc
Confidence 77888899999999999998887763 6889999999999999997653
No 86
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.31 E-value=1e-10 Score=89.42 Aligned_cols=97 Identities=12% Similarity=0.130 Sum_probs=72.1
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCC--CCCCCCCceEEEEEe
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSG--RPEHGGRDRHTCIAI 116 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~--~~~~~~~~~hi~f~v 116 (160)
+++|+.+.|+|++++.+||.+.|||+......... ......+..|+..+.|........... ...+|.+..|+||.|
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~-~~~~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~iaf~V 80 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHR-EKASHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGVKDVAFRV 80 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCC-ceeEEEEEeCCEEEEEecCCCCCchHHHHHHhCCCceEEEEEEE
Confidence 68999999999999999999999999876521111 112234556777888887654432111 113567789999999
Q ss_pred CCHHHHHHHHHHCCCeEecc
Q 031406 117 RDVSKLKMILDKAGISYTLS 136 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~ 136 (160)
+|++++++++.++|+++..+
T Consensus 81 ~Dv~~a~~~l~~~Ga~~v~~ 100 (353)
T TIGR01263 81 DDAAAAFEAAVERGAEPVQA 100 (353)
T ss_pred CCHHHHHHHHHHCCCEeccC
Confidence 99999999999999998654
No 87
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.28 E-value=4.3e-11 Score=91.43 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=73.0
Q ss_pred CceeeeeeeEEEEeC--CHHHHHHHHHHhcCCEEeeecCCCC--CCcceEEEEe--CCcEEEEEecCCCC--CCCC---C
Q 031406 34 DYGVVSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDK--LPYRGAWLWV--GAEMIHLMELPNPD--PLSG---R 102 (160)
Q Consensus 34 ~~~~~~i~hv~l~v~--D~~~a~~Fy~~~lG~~~~~~~~~~~--~~~~~~~~~~--g~~~~~l~~~~~~~--~~~~---~ 102 (160)
.+.+.+++||++.|. |+++++.||+++|||+......... .......+.. |...++|.++.... .... .
T Consensus 153 ~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~fl~ 232 (353)
T TIGR01263 153 GVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEFLE 232 (353)
T ss_pred CCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHHHH
Confidence 455789999999999 9999999999999998875433211 1222223333 44578877653221 1111 1
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHCCCeEeccC
Q 031406 103 PEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK 137 (160)
Q Consensus 103 ~~~~~~~~hi~f~v~d~~~~~~~l~~~G~~~~~~~ 137 (160)
...|.++.||||.|+|+++++++|+++|+++...+
T Consensus 233 ~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 233 FYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred HcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 12367789999999999999999999999987543
No 88
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.26 E-value=2.4e-11 Score=78.86 Aligned_cols=119 Identities=23% Similarity=0.324 Sum_probs=72.1
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcc-eEEEEe-CC-cEEEEEecC--------CCCCCCCCCCCC-
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYR-GAWLWV-GA-EMIHLMELP--------NPDPLSGRPEHG- 106 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~-~~~~~~-g~-~~~~l~~~~--------~~~~~~~~~~~~- 106 (160)
+++|++|.|+|+++|++||+++||++............. ...+.. .. ......... ............
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGG 81 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCc
Confidence 689999999999999999999999999876543332210 111111 11 011111100 000000000111
Q ss_pred -CCceEEEEEeCC---HHHHHHHHHHCCCeEeccCC--CceEEEEEcCCCCeEEEEe
Q 031406 107 -GRDRHTCIAIRD---VSKLKMILDKAGISYTLSKS--GRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 107 -~~~~hi~f~v~d---~~~~~~~l~~~G~~~~~~~~--g~~~~~~~DPdG~~ie~~~ 157 (160)
.+..|+++.+++ ..+........|..+..... ....+|++||||+.||+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 82 DLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEPGRGGVHVYFRDPDGILIELAT 138 (138)
T ss_pred hhccCceeEecccccccceEEEeeCCCCCEEEeecCCCcceEEEEECCCCcEEEeeC
Confidence 235799999998 66667777777888755321 2227999999999999974
No 89
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=5.5e-11 Score=83.71 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=86.1
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCC-----------CCcceEEEEeCCcEEEEEecCCCCCCCCCCC
Q 031406 36 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDK-----------LPYRGAWLWVGAEMIHLMELPNPDPLSGRPE 104 (160)
Q Consensus 36 ~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~ 104 (160)
+..+..|+.+.|.|.++++.||+++||+++....+.+. ..++..++..|...-+++.....+-......
T Consensus 14 ~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Ye 93 (299)
T KOG2943|consen 14 DTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYE 93 (299)
T ss_pred cchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCcccee
Confidence 34578999999999999999999999999886544333 4455677777644333332222222233456
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHCCCeEeccCCCceEEEEEcCCCCeEEEEee
Q 031406 105 HGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 105 ~~~~~~hi~f~v~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 158 (160)
.|..+.||.+.++|+-..++.+...|. ...+.-.+++.||||+.|++.+.
T Consensus 94 lGndfg~i~I~s~dv~~~ve~v~~p~~----~~~g~~~~~v~dPdGykF~l~~~ 143 (299)
T KOG2943|consen 94 LGNDFGGITIASDDVFSKVEKVNAPGG----KGSGCGIAFVKDPDGYKFYLIDR 143 (299)
T ss_pred ccCCcccEEEeHHHHHHHHHHhcCcCC----cccceEEEEEECCCCcEEEEecc
Confidence 678889999999999998888877655 22345568899999999999863
No 90
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=99.15 E-value=5.3e-10 Score=83.50 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=70.2
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeC
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR 117 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~ 117 (160)
....||+|.|+|+++|++||+.+|++.. +..+ . ...+ ++..+.+..... +.. ...-.-+|+.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde--~----a~cm--~dtI~vMllt~~-D~~------~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WDGD--K----LFLL--GKTSLYLQQTKA-EKK------NRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CCCC--c----cccc--cCcEEEEEecCC-CCC------CcceEEEEeccC
Confidence 3567999999999999999999988874 3222 1 1222 554444433333 111 122356899998
Q ss_pred ---CHHHHHHHHHHCCCeEeccC-CCceEEEEEcCCCCeEEEEe
Q 031406 118 ---DVSKLKMILDKAGISYTLSK-SGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 118 ---d~~~~~~~l~~~G~~~~~~~-~g~~~~~~~DPdG~~ie~~~ 157 (160)
+++++++++.++|.....++ +.+..--|.|||||.||++.
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf~rsf~D~DGH~WEi~~ 353 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFPLRLVFDLDGHIWVVSC 353 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccCcceeECCCCCEEEEEE
Confidence 67788999999988664433 32336778899999999985
No 91
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.13 E-value=3.4e-10 Score=86.90 Aligned_cols=100 Identities=12% Similarity=0.097 Sum_probs=74.5
Q ss_pred eeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCC-----CcceEEEEeCC--cEEEEEecCC---CCCCCC---C
Q 031406 36 GVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKL-----PYRGAWLWVGA--EMIHLMELPN---PDPLSG---R 102 (160)
Q Consensus 36 ~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~-----~~~~~~~~~g~--~~~~l~~~~~---~~~~~~---~ 102 (160)
.+.+|+||++.|.+++.+..||+++|||+.......+.. +.+...+..++ ..+.|.++.. ..+... .
T Consensus 177 gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eFL~ 256 (398)
T PLN02875 177 GLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTYLE 256 (398)
T ss_pred CcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHHHH
Confidence 357899999999999999999999999988754332221 23455566643 5778777653 222222 1
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHC----CCeEec
Q 031406 103 PEHGGRDRHTCIAIRDVSKLKMILDKA----GISYTL 135 (160)
Q Consensus 103 ~~~~~~~~hi~f~v~d~~~~~~~l~~~----G~~~~~ 135 (160)
...|.+++||||.|+|+.+++++|+++ |+++..
T Consensus 257 ~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~ 293 (398)
T PLN02875 257 HNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMP 293 (398)
T ss_pred hcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCC
Confidence 234678999999999999999999999 999876
No 92
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=99.04 E-value=9.7e-10 Score=76.06 Aligned_cols=93 Identities=19% Similarity=0.307 Sum_probs=60.3
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCC--CCC------CCCCCceE
Q 031406 40 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLS--GRP------EHGGRDRH 111 (160)
Q Consensus 40 i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~--~~~------~~~~~~~h 111 (160)
|+|+.+.|+|++++.++|++.|||++......+..+..+..+.+++.+++|+......... ... ..+.++.+
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGEGLYG 80 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--EEEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCCCeEE
Confidence 6899999999999999998889999997766667677888888888899999975432221 111 14677889
Q ss_pred EEEEeCCHHHHHHHHHHCCCe
Q 031406 112 TCIAIRDVSKLKMILDKAGIS 132 (160)
Q Consensus 112 i~f~v~d~~~~~~~l~~~G~~ 132 (160)
+|+.++|+++..+++.+.|+.
T Consensus 81 ~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 81 WALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp EEEE-S-HHHHHHHHHTTT-E
T ss_pred EEEecCCHHHHHHHHHhcCCC
Confidence 999999999999999999986
No 93
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=1.8e-09 Score=76.23 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=80.2
Q ss_pred CCCCCccCCCceeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEE--EEEecCCCCCCCCC
Q 031406 25 GKHNIKEIRDYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMI--HLMELPNPDPLSGR 102 (160)
Q Consensus 25 ~~~~~~~~~~~~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~--~l~~~~~~~~~~~~ 102 (160)
-+|.+..+.+ +...+.+|+|.|.|+++|+.||.++||+++.+... .++.+.+..++.+. +|....+...
T Consensus 136 ykF~l~~~~p-~s~pv~~V~l~VgdL~ks~kyw~~~lgM~ilekee----k~t~~~mgYgd~q~~LElt~~~~~id---- 206 (299)
T KOG2943|consen 136 YKFYLIDRGP-QSDPVLQVMLNVGDLQKSIKYWEKLLGMKILEKEE----KYTRARMGYGDEQCVLELTYNYDVID---- 206 (299)
T ss_pred cEEEEeccCC-CCCCeEEEEEEehhHHHHHHHHHHHhCcchhhhhh----hhhhhhhccCCcceEEEEEeccCccc----
Confidence 3344444332 45678999999999999999999999999987522 22345566666653 4433332211
Q ss_pred CCCCCCceEEEEEe--CCHHHHHHHHHHCCCeEecc------C--CCceEEEEEcCCCCeEEEEe
Q 031406 103 PEHGGRDRHTCIAI--RDVSKLKMILDKAGISYTLS------K--SGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 103 ~~~~~~~~hi~f~v--~d~~~~~~~l~~~G~~~~~~------~--~g~~~~~~~DPdG~~ie~~~ 157 (160)
.. .+...++|.+ +++..+.+.++..+-.+..+ | .....+.+.||||+.|.|+-
T Consensus 207 ~~--kg~griafaip~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVd 269 (299)
T KOG2943|consen 207 RA--KGFGRIAFAIPTDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVD 269 (299)
T ss_pred cc--ccceeEEEeccccccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEec
Confidence 11 2234566665 48888888888876655322 2 23477888999999998864
No 94
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.86 E-value=3.6e-08 Score=71.07 Aligned_cols=98 Identities=22% Similarity=0.254 Sum_probs=67.6
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCC-CCCCCCCCCceEEEEE
Q 031406 37 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPL-SGRPEHGGRDRHTCIA 115 (160)
Q Consensus 37 ~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~hi~f~ 115 (160)
-..|.||.|.|.|++++.+||++.|||+.....+ ...|+..|+...++....-.... ........++..+.+.
T Consensus 166 ~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~------~A~F~a~G~YHHHia~N~W~s~~~~~~~~~~~GLa~~~i~ 239 (265)
T COG2514 166 GTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP------SALFLASGDYHHHLAANTWNSRGARPRNANASGLAWLEIH 239 (265)
T ss_pred CcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC------cceEEecCCcceeEEEeccccCCCCCCCCCCCCcceEEEE
Confidence 3478999999999999999999999999987633 34888999987777655432211 1122234556778888
Q ss_pred eCCHHHHHHHHHHCCCeEeccCCCceEEEEEcCCCCeEEEE
Q 031406 116 IRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 156 (160)
Q Consensus 116 v~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~ie~~ 156 (160)
+++-..+....... .||+|+.|.+.
T Consensus 240 ~~~~~~l~~~~~~~----------------~Dp~G~~i~~~ 264 (265)
T COG2514 240 TPDPEKLDATGTRL----------------TDPWGIVIRVV 264 (265)
T ss_pred cCCcccccccccce----------------ecCCCceEEEe
Confidence 87644333221111 89999999874
No 95
>PRK10148 hypothetical protein; Provisional
Probab=98.78 E-value=1.4e-06 Score=58.62 Aligned_cols=109 Identities=14% Similarity=0.026 Sum_probs=72.6
Q ss_pred EEEEeC-CHHHHHHHHHHhcCCEEeeecC---C-----------------CCCCcceEEEEeCCcEEEEEecCCCCCCCC
Q 031406 43 VGILCE-NLERSLEFYQNILGLEINEARP---H-----------------DKLPYRGAWLWVGAEMIHLMELPNPDPLSG 101 (160)
Q Consensus 43 v~l~v~-D~~~a~~Fy~~~lG~~~~~~~~---~-----------------~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ 101 (160)
..|..+ |.++|.+||+++||.++..... . +...+..+.+.+++..+.+.......
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~~~---- 80 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSG---- 80 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCCCc----
Confidence 455564 8999999999999998764310 0 11223356677788766655432111
Q ss_pred CCCCCCCceEEEEEeCCHHH---HHHHHHHCCCeEeccC----CCceEEEEEcCCCCeEEEEee
Q 031406 102 RPEHGGRDRHTCIAIRDVSK---LKMILDKAGISYTLSK----SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 102 ~~~~~~~~~hi~f~v~d~~~---~~~~l~~~G~~~~~~~----~g~~~~~~~DPdG~~ie~~~~ 158 (160)
+..+. ..++++.++|.++ ++++| +.|.++..+. ++.+...++||.|+.|-|...
T Consensus 81 -~~~~~-~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 81 -KAHYS-GFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred -CCCCC-eEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhccEEEECCCCCEEEEEec
Confidence 11112 3678888888877 55655 5788877653 577899999999999999764
No 96
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.73 E-value=7.2e-08 Score=70.82 Aligned_cols=103 Identities=16% Similarity=0.167 Sum_probs=75.3
Q ss_pred ceeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCC--CCCcceEEEEeCCcEEEEEecCCCCC-CC--CCCCCCCCc
Q 031406 35 YGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHD--KLPYRGAWLWVGAEMIHLMELPNPDP-LS--GRPEHGGRD 109 (160)
Q Consensus 35 ~~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~--~~~~~~~~~~~g~~~~~l~~~~~~~~-~~--~~~~~~~~~ 109 (160)
-.+.+++||++.|.|...+..||+..|||+......-+ ...+...-+..|+..+.+.....+.. .. .-+.+|.+.
T Consensus 13 g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgv 92 (381)
T KOG0638|consen 13 GKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGV 92 (381)
T ss_pred cceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccch
Confidence 35789999999999999999999999999987644211 11222344555666666655544322 11 223567778
Q ss_pred eEEEEEeCCHHHHHHHHHHCCCeEeccC
Q 031406 110 RHTCIAIRDVSKLKMILDKAGISYTLSK 137 (160)
Q Consensus 110 ~hi~f~v~d~~~~~~~l~~~G~~~~~~~ 137 (160)
.-+||+|+|++++.+.+.++|+++..++
T Consensus 93 kdvafeVeD~da~~~~~va~Ga~v~~~p 120 (381)
T KOG0638|consen 93 KDVAFEVEDADAIFQEAVANGAKVVRPP 120 (381)
T ss_pred hceEEEecchHHHHHHHHHcCCcccCCc
Confidence 8999999999999999999999997765
No 97
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.69 E-value=2.3e-06 Score=54.44 Aligned_cols=110 Identities=18% Similarity=0.183 Sum_probs=63.6
Q ss_pred eeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeC--CcEEEEEecCCCCCCCCCCCCCCCceEEEEEeCC
Q 031406 41 HHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVG--AEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRD 118 (160)
Q Consensus 41 ~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d 118 (160)
.+-+|+|+|-+....||++.|||++..... ..+++... ...+.|-+.++..... -...-.+.++.+.|++
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~--V~G~KKl~~ivIkv~~ 73 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRA--VEGPKKLNRIVIKVPN 73 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B----SSS-SEEEEEEEESS
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCcccccc--ccCcceeeEEEEEcCC
Confidence 466899999999999999999999886543 22555542 2355555555443211 1111237899999998
Q ss_pred HHHHHHHHHHCCCeEecc--CCCceEEEEEcCCCCeEEEEeeC
Q 031406 119 VSKLKMILDKAGISYTLS--KSGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 119 ~~~~~~~l~~~G~~~~~~--~~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
..+.- .|.++|.++... ...++.|-..+|+|++|.+..-+
T Consensus 74 ~~EIe-~LLar~~~~~~l~kg~~gyAfe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 74 PKEIE-ALLARGAQYDRLYKGKNGYAFEAVSPEGDRFLLHAED 115 (125)
T ss_dssp HHHHH-HHHHC-S--SEEEE-SSSEEEEEE-TT--EEEEE--S
T ss_pred HHHHH-HHHhcccccceeEEcCCceEEEEECCCCCEEEEEEcC
Confidence 77765 455666665432 34578899999999999987543
No 98
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.64 E-value=1.1e-06 Score=67.82 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=79.6
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCC--CcceEEEEeCCcEEEEEecCCCC--------------CC-CC-
Q 031406 40 VHHVGILCENLERSLEFYQNILGLEINEARPHDKL--PYRGAWLWVGAEMIHLMELPNPD--------------PL-SG- 101 (160)
Q Consensus 40 i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~--~~~~~~~~~g~~~~~l~~~~~~~--------------~~-~~- 101 (160)
++||.++|.|...+..||+..|||+.......... ......+..|+..+.+.....+. +. ..
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD 80 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence 58999999999999999999999998764432111 12234455577677666653221 00 00
Q ss_pred -----CCCCCCCceEEEEEeCCHHHHHHHHHHCCCeEeccCCC---------ceEEEEEcCCCCeEEEEe
Q 031406 102 -----RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSKSG---------RPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 102 -----~~~~~~~~~hi~f~v~d~~~~~~~l~~~G~~~~~~~~g---------~~~~~~~DPdG~~ie~~~ 157 (160)
...+|.++.-++|.|+|++++++++.++|.....++.+ -...-+.-++|..+-|++
T Consensus 81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVd 150 (398)
T PLN02875 81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVS 150 (398)
T ss_pred HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEc
Confidence 01457788899999999999999999999988654311 133345566666666665
No 99
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.56 E-value=3.7e-07 Score=60.52 Aligned_cols=119 Identities=11% Similarity=0.045 Sum_probs=74.2
Q ss_pred CceeeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEE
Q 031406 34 DYGVVSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTC 113 (160)
Q Consensus 34 ~~~~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~ 113 (160)
++...++.+|.+.++|.+++..|++ .|||+.......- ....++-|+..+.|-..+..........+|.+..-++
T Consensus 4 P~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk----~v~l~rQG~I~~vln~ep~s~a~~~~~~HG~sv~aia 78 (139)
T PF14696_consen 4 PLGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSK----DVTLYRQGDINFVLNSEPDSFAAEFAAQHGPSVCAIA 78 (139)
T ss_dssp TT-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCC----SEEEEEETTEEEEEEEESTSCHHHHHHHHSSEEEEEE
T ss_pred CCCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCc----ceEEEEeCCEEEEEeCCCcchHHHHHHhcCCEEEEEE
Confidence 4567899999999999888888885 5999988754321 1233455777777755322111001123577789999
Q ss_pred EEeCCHHHHHHHHHHCCCeEeccCC---CceEEEEEcCCCCeEEEEe
Q 031406 114 IAIRDVSKLKMILDKAGISYTLSKS---GRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 114 f~v~d~~~~~~~l~~~G~~~~~~~~---g~~~~~~~DPdG~~ie~~~ 157 (160)
|.|+|.+++++++.++|.+....+. .-..--++-++|.++-|++
T Consensus 79 frV~Da~~A~~rA~~~GA~~~~~~~~~~e~~~paI~g~G~sl~yfVd 125 (139)
T PF14696_consen 79 FRVDDAAAAYERAVALGAEPVQEPTGPGELNIPAIRGIGGSLHYFVD 125 (139)
T ss_dssp EEES-HHHHHHHHHHTT--EEEEEEETT-BEEEEEE-CCC-EEEEEE
T ss_pred EEeCCHHHHHHHHHHcCCcCcccCCCCCcEeeeeEEccCCCEEEEEe
Confidence 9999999999999999998866531 1233455556666665554
No 100
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.41 E-value=4.7e-07 Score=67.60 Aligned_cols=103 Identities=15% Similarity=0.208 Sum_probs=71.8
Q ss_pred CceeeeeeeEEEEe--CCHHHHHHHHHHhcCCEEeeecC--CCCCCcceEEEEe--CCcEEEEEecCCCCCCCCC---CC
Q 031406 34 DYGVVSVHHVGILC--ENLERSLEFYQNILGLEINEARP--HDKLPYRGAWLWV--GAEMIHLMELPNPDPLSGR---PE 104 (160)
Q Consensus 34 ~~~~~~i~hv~l~v--~D~~~a~~Fy~~~lG~~~~~~~~--~~~~~~~~~~~~~--g~~~~~l~~~~~~~~~~~~---~~ 104 (160)
...+..|+|++..| ..++.+..||+++|||+...... .+....+.--+.. |..++.|-...+..+.... ..
T Consensus 162 ~~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y 241 (363)
T COG3185 162 GVGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREY 241 (363)
T ss_pred ccCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHh
Confidence 33456889998876 89999999999999998775433 2222333333333 3335555555444332221 24
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHCCCeEecc
Q 031406 105 HGGRDRHTCIAIRDVSKLKMILDKAGISYTLS 136 (160)
Q Consensus 105 ~~~~~~hi~f~v~d~~~~~~~l~~~G~~~~~~ 136 (160)
.|.+..||+|.++|+.++.++++++|+++...
T Consensus 242 ~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~i 273 (363)
T COG3185 242 RGEGIQHIAFGTDDIYATVAALRERGVKFLPI 273 (363)
T ss_pred CCCcceEEEecccHHHHHHHHHHHcCCccCCC
Confidence 67889999999999999999999999998654
No 101
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=97.72 E-value=0.0016 Score=41.95 Aligned_cols=96 Identities=22% Similarity=0.215 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHhcCCEEee---ecCCC----CCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeCCHH
Q 031406 48 ENLERSLEFYQNILGLEINE---ARPHD----KLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVS 120 (160)
Q Consensus 48 ~D~~~a~~Fy~~~lG~~~~~---~~~~~----~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~~ 120 (160)
.+.++|.+||.++||-.... ..+.. ....-.+.+.+++..+.......... .+. ..++++.++|.+
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~~~~~------~~~-~~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGGPDFP------FGN-NISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEESTS----------T-TEEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCCCCCC------CCC-cEEEEEEcCCHH
Confidence 79999999999999853222 11211 11223456777888877766652211 112 367888888655
Q ss_pred ---HHHHHHHHCCCeEeccCCCceEEEEEcCCCCeEEEE
Q 031406 121 ---KLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 156 (160)
Q Consensus 121 ---~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~ie~~ 156 (160)
+++++|.+.|- +..+...+.|--|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~------~~~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ------WFSRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE------TCCEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC------ccceeEEEEeCCCCEEEeC
Confidence 46788877665 3348899999999999874
No 102
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.71 E-value=0.001 Score=50.21 Aligned_cols=111 Identities=13% Similarity=0.074 Sum_probs=72.7
Q ss_pred CceeeeeeeEEEEeCCH-HHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEEecCCCCCCCCCCCCCCCceE
Q 031406 34 DYGVVSVHHVGILCENL-ERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPDPLSGRPEHGGRDRH 111 (160)
Q Consensus 34 ~~~~~~i~hv~l~v~D~-~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~h 111 (160)
++...++.+|.+.|.|. ++..+++. .|||+...+... +.+.+.- |+..+.+...+..........+|.+..-
T Consensus 17 P~~~~GfeFvEf~~~d~~~~l~~l~~-~lGF~~~~~Hrs-----k~v~l~rQGdinlvvn~~~~s~a~~f~~~Hgps~~a 90 (363)
T COG3185 17 PEGTDGFEFVEFAVPDPQEALGALLG-QLGFTAVAKHRS-----KAVTLYRQGDINLVVNAEPDSFAAEFLDKHGPSACA 90 (363)
T ss_pred CCCCCceeEEEEecCCHHHHHHHHHH-HhCccccccccc-----cceeEEEeCCEEEEEcCCCcchhhHHHHhcCCchhe
Confidence 33467999999999999 55555655 599997764332 2344444 5544444443322111111245666788
Q ss_pred EEEEeCCHHHHHHHHHHCCCeEeccC-------------CCceEEEEEcCCC
Q 031406 112 TCIAIRDVSKLKMILDKAGISYTLSK-------------SGRPAIFTRDPDA 150 (160)
Q Consensus 112 i~f~v~d~~~~~~~l~~~G~~~~~~~-------------~g~~~~~~~DPdG 150 (160)
++|.|+|...++++..+.|.+....+ .|+..+||.|.+|
T Consensus 91 ~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~ 142 (363)
T COG3185 91 MAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYG 142 (363)
T ss_pred eEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCC
Confidence 99999999999999999999553321 2566788888873
No 103
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00013 Score=54.03 Aligned_cols=103 Identities=16% Similarity=0.097 Sum_probs=69.4
Q ss_pred ceeeeeeeEEEEeC--CHHHHHHHHHHhcCCEEeeecCCCCCCcc-----eEEEEeCCcEEEEEecCCCCCCCC------
Q 031406 35 YGVVSVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYR-----GAWLWVGAEMIHLMELPNPDPLSG------ 101 (160)
Q Consensus 35 ~~~~~i~hv~l~v~--D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~-----~~~~~~g~~~~~l~~~~~~~~~~~------ 101 (160)
+.+..++|++..++ .++.+.+||.+.|||..-+..++...... ...+...+..+.+...+...+...
T Consensus 174 ~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~mpinEp~~G~k~ksQIqe 253 (381)
T KOG0638|consen 174 GGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIKMPINEPAPGKKKKSQIQE 253 (381)
T ss_pred cceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEEEeccCCCCCCccHHHHHH
Confidence 56788999999998 67889999999999997766553332221 111222233333322222222111
Q ss_pred --CCCCCCCceEEEEEeCCHHHHHHHHHHCCCeEeccC
Q 031406 102 --RPEHGGRDRHTCIAIRDVSKLKMILDKAGISYTLSK 137 (160)
Q Consensus 102 --~~~~~~~~~hi~f~v~d~~~~~~~l~~~G~~~~~~~ 137 (160)
....|.++.||++.++|+=++.+.++++|.++..+|
T Consensus 254 yv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~P 291 (381)
T KOG0638|consen 254 YVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPP 291 (381)
T ss_pred HHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCC
Confidence 124577889999999999999999999999986543
No 104
>PF15067 FAM124: FAM124 family
Probab=97.22 E-value=0.0061 Score=43.54 Aligned_cols=101 Identities=21% Similarity=0.326 Sum_probs=58.4
Q ss_pred eeeeEEEEeC--CHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe---CCc--EEEEEecCCCCCCCCCCCCCCCceE
Q 031406 39 SVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV---GAE--MIHLMELPNPDPLSGRPEHGGRDRH 111 (160)
Q Consensus 39 ~i~hv~l~v~--D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~---g~~--~~~l~~~~~~~~~~~~~~~~~~~~h 111 (160)
.+.-++|+|+ |++.+++||+-+|+-+...... ++ .++.. .+. ++.|-..+ ......+. . ..-
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~--~F----C~F~lys~~~~~iQlsLK~lp--~~~~p~p~--e-sav 196 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKE--DF----CFFTLYSQPGLDIQLSLKQLP--PGMSPEPT--E-SAV 196 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC--Cc----EEEEEecCCCeEEEEEeccCC--CCCCcccc--c-ceE
Confidence 4566889998 9999999999999988765433 21 22222 232 33333331 11111111 2 245
Q ss_pred EEEEeCCHHHHHHHHHHCCCeEeccCCCceEEEEEcCCCCeEEE
Q 031406 112 TCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 155 (160)
Q Consensus 112 i~f~v~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~ie~ 155 (160)
+.|.|.|+.+++--|- +.. .....+. --..|||||.|-+
T Consensus 197 LqF~V~~igqLvpLLP-npc--~PIS~~r--WqT~D~DGNkILL 235 (236)
T PF15067_consen 197 LQFRVEDIGQLVPLLP-NPC--SPISETR--WQTEDYDGNKILL 235 (236)
T ss_pred EEEEecchhhhcccCC-CCc--ccccCCc--ceeeCCCCCEecc
Confidence 8999999998874442 222 1111222 3457999998843
No 105
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.92 E-value=0.0035 Score=39.10 Aligned_cols=91 Identities=20% Similarity=0.301 Sum_probs=44.3
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeC-
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIR- 117 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~- 117 (160)
.+..+.|.|.| +++..||+++||-.. ...+.+.+..++.-...+....+ +..+-|.|+
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~~~~-------------------~~~l~f~ea~G~DL~~~~~~twD-Le~Lkf~V~~ 63 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFGGQL-------------------PFFLTFQEAQGPDLTIENNETWD-LEMLKFQVPK 63 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---HHH-------------------TTTEEEEE---CCGSS-TTSBSS-EEEEEEEES-
T ss_pred EEEEEEEeCCC-hhHHHHHHhccccCC-------------------CceEEEeeccCCccccCCCcEEe-eEEEEEEecC
Confidence 46789999999 889999999886221 13455555555543322222222 467788887
Q ss_pred --CHHHHHHHHHHCCCeEeccCCCceEEEEEcCCCCeE
Q 031406 118 --DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANAL 153 (160)
Q Consensus 118 --d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~i 153 (160)
|+.++.+++.+. .+ ..+...+.+.+.||.|..|
T Consensus 64 ~~Dl~~L~~~le~~--~~-fidKk~k~l~~~Dps~IEl 98 (101)
T PF14507_consen 64 DFDLAALKSHLEEQ--EF-FIDKKEKFLVTSDPSQIEL 98 (101)
T ss_dssp S--HHHHHHHTTTS---E-E--TT-SEEEEE-TTS-EE
T ss_pred cccHHHHHHHhccc--ce-EecCCceEEEEECCcceEE
Confidence 788888888773 22 2233467889999998654
No 106
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=96.56 E-value=0.014 Score=36.80 Aligned_cols=50 Identities=18% Similarity=0.122 Sum_probs=38.6
Q ss_pred eEEEEEeCCHHHHHHHHHH-CCCeEecc----CCCceEEEEEcCCC-CeEEEEeeC
Q 031406 110 RHTCIAIRDVSKLKMILDK-AGISYTLS----KSGRPAIFTRDPDA-NALEFTQVD 159 (160)
Q Consensus 110 ~hi~f~v~d~~~~~~~l~~-~G~~~~~~----~~g~~~~~~~DPdG-~~ie~~~~~ 159 (160)
.|++|.|+|++++.+.+.+ .|+..... ..+.+..++..++| ..||++++.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~ 56 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPL 56 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeC
Confidence 5999999999999999998 89876432 23445667788888 689999875
No 107
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=96.18 E-value=0.033 Score=37.53 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=39.2
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEEec
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMEL 93 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~~ 93 (160)
++++||+|.|.|++++.+-+++ .|.+.......... -..+|+.. ++.++++...
T Consensus 114 rGfgHIci~V~di~sac~~lke-kGV~f~Kk~~dGk~-K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 114 RGFGHICIEVDDINSACERLKE-KGVRFKKKLKDGKM-KPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred CccceEEEEeCCHHHHHHHHHH-hCceeeecCCCccc-cceeEEECCCCCeEEEeec
Confidence 6899999999999999999987 99997665544443 23455554 4556766543
No 108
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=95.57 E-value=0.072 Score=34.95 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=38.1
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEEe
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 92 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~ 92 (160)
.++.|+++.|.|++++.+..++ .|.+..........+.+..++.. +|..++|++
T Consensus 86 ~g~~hia~~v~d~d~~~~~l~~-~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e 140 (142)
T cd08353 86 LGLRRVMFAVDDIDARVARLRK-HGAELVGEVVQYENSYRLCYIRGPEGILIELAE 140 (142)
T ss_pred CCceEEEEEeCCHHHHHHHHHH-CCCceeCCceecCCCeEEEEEECCCCCEEEeee
Confidence 4689999999999999999987 89887653222223344555554 455677765
No 109
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=94.65 E-value=0.34 Score=31.68 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=43.8
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEEecCCCC
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNPD 97 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~~~~~~ 97 (160)
.++.|+.+.|+|++++.+-.+. .|.++.........+.+.+++.. +|..++|++..+..
T Consensus 68 ~g~~hia~~V~Dvda~~~~l~~-~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~~~ 127 (136)
T cd08342 68 DGVCDVAFRVDDAAAAYERAVA-RGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKGYK 127 (136)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-cCCeEccCceecCCeEEEEEEeccCCcEEEEEecCCCC
Confidence 4678999999999999999876 89998753332244445666665 57789999977654
No 110
>PLN02367 lactoylglutathione lyase
Probab=94.58 E-value=0.27 Score=35.67 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=41.5
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEEecCCC
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPNP 96 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~~~~~ 96 (160)
.+++|+++.|.|++++.+.+++ .|.++... +........+|+.. +|..++|++...-
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~-P~~g~~~riaFIkDPDGn~IEL~e~~~~ 225 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKK-PNDGKMKGIAFIKDPDGYWIEIFDLKTI 225 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeC-CccCCceEEEEEECCCCCEEEEEecccc
Confidence 4899999999999999999976 99998753 22222223456655 5778999886543
No 111
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=94.08 E-value=0.27 Score=29.51 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHCCCeEecc---CCCceEEEEEcCCCCeEEEEe
Q 031406 118 DVSKLKMILDKAGISYTLS---KSGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 118 d~~~~~~~l~~~G~~~~~~---~~g~~~~~~~DPdG~~ie~~~ 157 (160)
..+++.+.+.+.|+++..- .++++.+...|.||+.+|+.-
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~~~dG~~~ev~v 72 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDGCYEVEARDKDGKKVEVYV 72 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCCEEEEEEEECCCCEEEEEE
Confidence 6889999999999977542 456889999999999999864
No 112
>PRK11478 putative lyase; Provisional
Probab=94.05 E-value=0.51 Score=30.13 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=35.1
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEEe
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 92 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~ 92 (160)
.++.|+++.|.|++++.+-..+ .|.++......+..+.+.+|+.. +|..+++++
T Consensus 74 ~g~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 74 CGLRHLAFSVDDIDAAVAHLES-HNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred CceeEEEEEeCCHHHHHHHHHH-cCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 4678999999999999998876 89987542221222233444444 455666654
No 113
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=93.94 E-value=0.36 Score=30.57 Aligned_cols=30 Identities=13% Similarity=0.398 Sum_probs=25.7
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeee
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEA 68 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~ 68 (160)
.++.|+++.|.|++++.+..++ .|.++...
T Consensus 71 ~g~~h~~f~v~d~~~~~~~l~~-~G~~~~~~ 100 (128)
T cd07249 71 EGLHHIAFEVDDIDAALARLKA-QGVRLLQE 100 (128)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-CCCeeecc
Confidence 5689999999999999999977 79987653
No 114
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=93.66 E-value=0.73 Score=28.89 Aligned_cols=50 Identities=18% Similarity=0.071 Sum_probs=35.1
Q ss_pred CceEEEEEeCCHHHHHHHHHH-CCCeEeccC---C-CceEEEEEcCCCCeEEEEe
Q 031406 108 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK---S-GRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 108 ~~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~---~-g~~~~~~~DPdG~~ie~~~ 157 (160)
++.|+++.|.|++++.+.+.+ .|+.+.... . ..+.+.+..+++..+++..
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 57 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFS 57 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEE
Confidence 368999999999999988875 799886432 1 1223444455677777764
No 115
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=93.46 E-value=0.55 Score=31.74 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=34.5
Q ss_pred ceEEEEEeCCHHHHHHHHHH-CCCeEeccCCCceEEEEEc-CCCCeEEEEee
Q 031406 109 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRD-PDANALEFTQV 158 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~~g~~~~~~~D-PdG~~ie~~~~ 158 (160)
++|+++.|.|+++..+...+ .|.++.....+...++..+ .++..+++.+.
T Consensus 2 l~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 53 (157)
T cd08347 2 LHGVTLTVRDPEATAAFLTDVLGFREVGEEGDRVRLEEGGGGPGAVVDVLEE 53 (157)
T ss_pred cccEEEEeCCHHHHHHHHHHhcCCEEEeeeCCEEEEEecCCCCCCEEEEEeC
Confidence 68999999999999988866 5988765443322222222 24788888764
No 116
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=93.12 E-value=0.76 Score=31.15 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=36.5
Q ss_pred CceEEEEEeCCHHHHHHHHHH-CCCeEecc-----CC------------C-----ceEEEEEcCCCCeEEEEeeC
Q 031406 108 RDRHTCIAIRDVSKLKMILDK-AGISYTLS-----KS------------G-----RPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 108 ~~~hi~f~v~d~~~~~~~l~~-~G~~~~~~-----~~------------g-----~~~~~~~DPdG~~ie~~~~~ 159 (160)
++.|+++.|.|++++.+...+ .|.++... .. + .+..++..++|..||+++++
T Consensus 4 ~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~ 78 (162)
T TIGR03645 4 TFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFK 78 (162)
T ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEecc
Confidence 368999999999999988866 68876421 00 1 12345555678889999864
No 117
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=92.52 E-value=0.82 Score=29.09 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=33.6
Q ss_pred ceEEEEEeCCHHHHHHHHHHC----CCeEeccCCCceEEEEEcCCCCeEEEEeeC
Q 031406 109 DRHTCIAIRDVSKLKMILDKA----GISYTLSKSGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~~----G~~~~~~~~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
+.|+.+.|.|++++.+.+.+. |.+....... ...|+...++..+++.+.+
T Consensus 2 i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~-~~~~~~~~~~~~i~l~~~~ 55 (128)
T cd07242 2 IHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED-GRSWRAGDGGTYLVLQQAD 55 (128)
T ss_pred CceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc-CceEEecCCceEEEEEecc
Confidence 589999999999998888775 8887654322 2233333455677776543
No 118
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=92.26 E-value=1.2 Score=31.10 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=39.2
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEEecCC
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELPN 95 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~~~~ 95 (160)
.++.|+++.|.|++++.+.+++ .|+++... +......+..|+.. +|..++|++...
T Consensus 120 ~G~~Hlaf~V~Dvd~~~~~L~~-~Gv~v~~~-p~~~~~~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 120 RGFGHIGITVDDVYKACERFEK-LGVEFVKK-PDDGKMKGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred CCccEEEEEcCCHHHHHHHHHH-CCCeEEeC-CccCCceeEEEEECCCCCEEEEEECCC
Confidence 4799999999999999999987 99987642 21111223345444 566888888654
No 119
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=92.16 E-value=0.83 Score=27.54 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=36.1
Q ss_pred EEEEEeCCHHHHHHHHHH-CCCeEeccCC--CceEEEEEcCCCCeEEEEeeC
Q 031406 111 HTCIAIRDVSKLKMILDK-AGISYTLSKS--GRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 111 hi~f~v~d~~~~~~~l~~-~G~~~~~~~~--g~~~~~~~DPdG~~ie~~~~~ 159 (160)
|+.+.+.|++++.+.+.+ .|.+...... .....++.++ +..|+|.+.+
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~ 51 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLG-GTRLELFEGD 51 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCCEEEEEEecC-CceEEEecCC
Confidence 788999999999999987 8998876553 2445555554 7888887754
No 120
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=92.11 E-value=1.4 Score=27.72 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=35.7
Q ss_pred ceEEEEEeCCHHHHHHHHHH-CCCeEeccC---C--CceEEEEEcC---CCCeEEEEee
Q 031406 109 DRHTCIAIRDVSKLKMILDK-AGISYTLSK---S--GRPAIFTRDP---DANALEFTQV 158 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~---~--g~~~~~~~DP---dG~~ie~~~~ 158 (160)
+.|+++.|+|++++.+...+ .|++..... . +....++.+. .|..+++.+.
T Consensus 2 i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 60 (126)
T cd08346 2 LHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEW 60 (126)
T ss_pred cccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEec
Confidence 57999999999999988876 699875432 1 1334555554 5678888764
No 121
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=92.04 E-value=0.86 Score=27.82 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=33.5
Q ss_pred ceEEEEEeCCHHHHHHHHH-HCCCeEeccCC-CceEEEEEcCCCCeEEEEee
Q 031406 109 DRHTCIAIRDVSKLKMILD-KAGISYTLSKS-GRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~-~~G~~~~~~~~-g~~~~~~~DPdG~~ie~~~~ 158 (160)
+.|+++.|+|++++.+... ..|.+...... .....++...++..+++...
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~i~l~~~ 52 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLFPGAWLYAGDGPQLHLIEE 52 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCCCceEEEeCCCcEEEEEec
Confidence 3699999999999988886 56887654332 12334555555556777654
No 122
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.98 E-value=2.6 Score=28.19 Aligned_cols=107 Identities=12% Similarity=0.082 Sum_probs=59.5
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCC-EEe--eecCCCC-----CCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCce
Q 031406 39 SVHHVGILCENLERSLEFYQNILGL-EIN--EARPHDK-----LPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDR 110 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~-~~~--~~~~~~~-----~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~ 110 (160)
++.-.-..-.+.++|..||.++|-= ++. .+.+.+. .....+-+.++|..+..+........ ..... .
T Consensus 5 kit~~L~F~~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~~ld~g~~~~f----~fneA-~ 79 (151)
T COG3865 5 KITPFLWFDGNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFMALDGGPNTSF----KFNEA-F 79 (151)
T ss_pred cceeEEEECCcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEEEEcCCCCcCC----CcCcc-E
Confidence 3333334448999999999999843 222 1122111 11223456667765555444322111 11111 3
Q ss_pred EEEEEeCC---HHHHHHHHHHCCCeEeccCCCceEEEEEcCCCCeEEEE
Q 031406 111 HTCIAIRD---VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 156 (160)
Q Consensus 111 hi~f~v~d---~~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~ie~~ 156 (160)
.+.+.++| +|.+...|.+.|. ......+++|-.|.-|.|.
T Consensus 80 S~~v~~~~q~E~Drlwnal~~~g~------e~~~cgW~kDKfGVSWQi~ 122 (151)
T COG3865 80 SFQVACDDQEEIDRLWNALSDNGG------EAEACGWLKDKFGVSWQIV 122 (151)
T ss_pred EEEEEcCCHHHHHHHHHHHhccCc------chhcceeEecccCcEEEEc
Confidence 45566664 5567788888776 3345678888888877664
No 123
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=91.97 E-value=0.94 Score=28.59 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=30.2
Q ss_pred eEEEEEeCCHHHHHHHHHHCCCeEeccCCCceEEEEEcCCCCeEEE
Q 031406 110 RHTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 155 (160)
Q Consensus 110 ~hi~f~v~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~ie~ 155 (160)
.|+.+.|+|++++.+.....|.++.........+.+..++|..+.+
T Consensus 2 ~~i~l~V~D~~~a~~FY~~LGf~~~~~~~~~~~~~~~~~~~~~l~l 47 (122)
T cd07235 2 DAVGIVVADMAKSLDFYRRLGFDFPEEADDEPHVEAVLPGGVRLAW 47 (122)
T ss_pred ceEEEEeccHHHHHHHHHHhCceecCCcCCCCcEEEEeCCCEEEEE
Confidence 6899999999999988877898875433222233444444444433
No 124
>PRK10291 glyoxalase I; Provisional
Probab=91.63 E-value=2.1 Score=27.38 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=38.2
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeec-CCCCCCcceEEEEe-CCcEEEEEecCC
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEAR-PHDKLPYRGAWLWV-GAEMIHLMELPN 95 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~-~~~~~~~~~~~~~~-g~~~~~l~~~~~ 95 (160)
.++.|+++.|.|++++.+-.++ .|.++.... +........+++.. ++..++|++...
T Consensus 64 ~~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 64 TAYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred CCeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 3688999999999999998876 898766422 11121122344444 577888888653
No 125
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=91.52 E-value=1.9 Score=27.72 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=34.7
Q ss_pred ceEEEEEeCCHHHHHHHHHH-CCCeEeccCCCceEEEEEcC--CCCeEEEEee
Q 031406 109 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP--DANALEFTQV 158 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~~g~~~~~~~DP--dG~~ie~~~~ 158 (160)
+.|+.+.|.|++++.+...+ .|.++..........++..+ .+..+.+.+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 54 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPLGGLVFLSRDPDEHHQIALITG 54 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeeccCCcEEEEEecCCCceEEEEEec
Confidence 57999999999999988876 79988654432234454433 3456776654
No 126
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=91.05 E-value=1.9 Score=27.21 Aligned_cols=48 Identities=6% Similarity=0.042 Sum_probs=33.5
Q ss_pred ceEEEEEeCCHHHHHHHHHH-CCCeEeccCCCceEEEEEcCC-CCeEEEEee
Q 031406 109 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPD-ANALEFTQV 158 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~~g~~~~~~~DPd-G~~ie~~~~ 158 (160)
+.|+.+.|+|++++.+.... .|.++....+ ..+++...+ +..+.+.+.
T Consensus 3 i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~--~~~~l~~~~~~~~l~l~~~ 52 (125)
T cd07255 3 IGAVTLRVADLERSLAFYQDVLGLEVLERTD--STAVLGTGGKRPLLVLEED 52 (125)
T ss_pred EEEEEEEECCHHHHHHHHHhccCcEEEEcCC--CEEEEecCCCeEEEEEEeC
Confidence 68999999999999988876 6998876532 234444443 456666543
No 127
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=90.54 E-value=2.7 Score=26.28 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=33.0
Q ss_pred ceEEEEEeCCHHHHHHHHHH-CCCeEecc---C-CCceEEEEEcCCCCeEEEEee
Q 031406 109 DRHTCIAIRDVSKLKMILDK-AGISYTLS---K-SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~-~G~~~~~~---~-~g~~~~~~~DPdG~~ie~~~~ 158 (160)
+.|+++.|+|++++.+...+ .|.++... + .+....++.-.+|..+++++.
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 56 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTR 56 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcC
Confidence 57999999999999888766 58876432 1 222233343335677888753
No 128
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=89.94 E-value=1.6 Score=26.70 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=33.5
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEE
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHL 90 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l 90 (160)
.+..|+.+.|.|++++.+.+.+ +|.+..........+....++.. +|..+++
T Consensus 55 ~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 55 GGGFHLCFEVEDVDALYERLKE-LGAEIVTEPRDDPWGQRSFYFIDPDGNRIEF 107 (108)
T ss_dssp SSEEEEEEEESHHHHHHHHHHH-TTSEEEEEEEEETTSEEEEEEE-TTS-EEEE
T ss_pred CceeEEEEEEcCHHHHHHHHHH-CCCeEeeCCEEcCCCeEEEEEECCCCCEEEe
Confidence 4678999999999999999987 89987653322222333444443 3445554
No 129
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=89.78 E-value=2.8 Score=26.51 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=31.0
Q ss_pred ceEEEEEeCCHHHHHHHHHH-CCCeEeccCCCceEEEEEcC-CCCeEEEE
Q 031406 109 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP-DANALEFT 156 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~~g~~~~~~~DP-dG~~ie~~ 156 (160)
+.|+++.|.|++++.+.... .|.+......+. ..++..+ .++.+.+.
T Consensus 3 l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~~-~~~~~~~~~~~~~~l~ 51 (120)
T cd07252 3 LGYLGVESSDLDAWRRFATDVLGLQVGDRPEDG-ALYLRMDDRAWRIAVH 51 (120)
T ss_pred ccEEEEEeCCHHHHHHHHHhccCceeccCCCCC-eEEEEccCCceEEEEE
Confidence 57999999999999988866 699876543222 3344433 33445544
No 130
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=89.41 E-value=1.8 Score=27.30 Aligned_cols=29 Identities=24% Similarity=0.529 Sum_probs=24.5
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEee
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINE 67 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~ 67 (160)
.++.|+++.|.|++++.+..+. .|.++..
T Consensus 71 ~g~~~i~~~v~di~~~~~~l~~-~G~~~~~ 99 (128)
T TIGR03081 71 GGIHHIAIEVDDIEAALETLKE-KGVRLID 99 (128)
T ss_pred CceEEEEEEcCCHHHHHHHHHH-CCCcccC
Confidence 4678999999999999998876 7888764
No 131
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=89.04 E-value=2.3 Score=26.23 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=25.6
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeee
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEA 68 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~ 68 (160)
.++.|+.+.|.|++++.+...+ .|.+....
T Consensus 66 ~~~~~~~~~v~di~~~~~~l~~-~g~~~~~~ 95 (119)
T cd07263 66 GGTPGLVLATDDIDATYEELKA-RGVEFSEE 95 (119)
T ss_pred CCceEEEEEehHHHHHHHHHHh-CCCEEeec
Confidence 4678999999999999999876 89887753
No 132
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=88.96 E-value=3.1 Score=25.97 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=30.5
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEE
Q 031406 42 HVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLM 91 (160)
Q Consensus 42 hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~ 91 (160)
|+.+.|.|+++..+...+ .|.++.........+.+..++.. +|..++++
T Consensus 69 ~~~~~v~did~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~ 118 (119)
T cd08359 69 ILNFEVDDVDAEYERLKA-EGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIV 118 (119)
T ss_pred EEEEEECCHHHHHHHHHh-cCCCeeeccccCCCcceEEEEECCCCCEEEEE
Confidence 899999999999999987 78876543222222333344443 34455554
No 133
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=88.08 E-value=3.4 Score=25.71 Aligned_cols=29 Identities=14% Similarity=0.382 Sum_probs=25.1
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeee
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEA 68 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~ 68 (160)
++.|+.+.|.|++++.+-... .|+++...
T Consensus 70 ~~~~i~~~v~did~~~~~l~~-~G~~~~~~ 98 (121)
T cd07233 70 GFGHLAFAVDDVYAACERLEE-MGVEVTKP 98 (121)
T ss_pred CeEEEEEEeCCHHHHHHHHHH-CCCEEeeC
Confidence 678999999999999988876 89987753
No 134
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=87.95 E-value=3.6 Score=25.89 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=31.2
Q ss_pred eEEEEEeCCHHHHHHHHHH----CCCeEeccCCCceEEEEEcC-CCCeEEEEe
Q 031406 110 RHTCIAIRDVSKLKMILDK----AGISYTLSKSGRPAIFTRDP-DANALEFTQ 157 (160)
Q Consensus 110 ~hi~f~v~d~~~~~~~l~~----~G~~~~~~~~g~~~~~~~DP-dG~~ie~~~ 157 (160)
.|+.+.|.|++++.+...+ .|.+......+.+ +.+..+ .+..+.+..
T Consensus 2 ~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~~~-~~~~~~~~~~~~~l~~ 53 (123)
T cd07262 2 DHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGPGA-VGYGKGGGGPDFWVTK 53 (123)
T ss_pred cEEEEecCcHHHHHHHHHHHHhhcCceEEeecCCce-eEeccCCCCceEEEec
Confidence 6999999999999888876 5888765432222 334444 355666654
No 135
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=87.61 E-value=3.2 Score=27.45 Aligned_cols=56 Identities=14% Similarity=0.064 Sum_probs=37.6
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecC-CCCCCcceEEEEe-CCcEEEEEecC
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEARP-HDKLPYRGAWLWV-GAEMIHLMELP 94 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~-~~~~~~~~~~~~~-g~~~~~l~~~~ 94 (160)
.++.|+.+.|.|++++.+...+ .|.++..... .+.......++.. .|..++|++..
T Consensus 85 ~g~~hi~f~v~dld~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 85 NGFGHIAIGVDDVYKACERVRA-LGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred CceeEEEEecCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 3688999999999999999977 8987764321 1111222344443 56688887755
No 136
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=87.31 E-value=4 Score=25.41 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=25.1
Q ss_pred CceEEEEEeCCHHHHHHHHHH-CCCeEeccC
Q 031406 108 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK 137 (160)
Q Consensus 108 ~~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~ 137 (160)
++.|+.+.|+|+++..+...+ .|.+.....
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeeccc
Confidence 368999999999999988877 698886544
No 137
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=86.74 E-value=4.1 Score=25.31 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=24.1
Q ss_pred ceEEEEEeCCHHHHHHHHHHCCCeEecc
Q 031406 109 DRHTCIAIRDVSKLKMILDKAGISYTLS 136 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~~G~~~~~~ 136 (160)
+.|+++.|.|++++.+.....|.++...
T Consensus 3 i~hv~l~v~d~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 3 IDHFALEVPDLEVARRFYEAFGLDVREE 30 (112)
T ss_pred eeEEEEecCCHHHHHHHHHHhCCcEEee
Confidence 6899999999999988888789988643
No 138
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=86.47 E-value=9.1 Score=26.81 Aligned_cols=77 Identities=19% Similarity=0.145 Sum_probs=42.3
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeec-CCCCCCcceEE----EEeCCcEEEEEecCCCCCCCCCCCCCCCceEE
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEAR-PHDKLPYRGAW----LWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 112 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~-~~~~~~~~~~~----~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi 112 (160)
-.++||+++|++.+.+.+|-+.++..-..-.. ..++.++...- +.+++..+.+++.+-+... ..| -.+.-||
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~K-~Yp--~eGWEHI 109 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYPKDK-RYP--QEGWEHI 109 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---SS---S--S-EEEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCCC-CCC--CCCceEE
Confidence 36799999999999999999988766433221 11222221111 3446778888877644331 122 2456899
Q ss_pred EEEeC
Q 031406 113 CIAIR 117 (160)
Q Consensus 113 ~f~v~ 117 (160)
-|.++
T Consensus 110 E~Vip 114 (185)
T PF06185_consen 110 EFVIP 114 (185)
T ss_dssp EEE--
T ss_pred EEEec
Confidence 99987
No 139
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=86.43 E-value=5.7 Score=24.47 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=32.5
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEEe
Q 031406 40 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 92 (160)
Q Consensus 40 i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~ 92 (160)
..|+.+.|.|++++.+-++. .|.++.........+.+..++.. +|..+++.+
T Consensus 58 ~~~i~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~ 110 (112)
T cd07238 58 VPDLSIEVDDVDAALARAVA-AGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILT 110 (112)
T ss_pred CCEEEEEeCCHHHHHHHHHh-cCCeEecCCccCCCceEEEEEECCCCCEEEEEE
Confidence 46899999999999998876 88887653222222323333333 345566553
No 140
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=86.42 E-value=4.9 Score=24.81 Aligned_cols=38 Identities=8% Similarity=0.130 Sum_probs=28.8
Q ss_pred ceEEEEEeCCHHHHHHHHHH-CCCeEeccCCCceEEEEEcC
Q 031406 109 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDP 148 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~~g~~~~~~~DP 148 (160)
+.|+.+.|.|+++..+...+ .|.++..... ...++..+
T Consensus 3 l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~--~~~~~~~~ 41 (117)
T cd07240 3 IAYAELEVPDLERALEFYTDVLGLTVLDRDA--GSVYLRCS 41 (117)
T ss_pred eeEEEEecCCHHHHHHHHHhccCcEEEeecC--CeEEEecC
Confidence 68999999999999988888 7988876542 23455544
No 141
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=86.21 E-value=3.7 Score=28.70 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=37.2
Q ss_pred ceEEEEEeC--CHHHHHHHHHH-CCCeEeccC------CCceEEEEEcCCC-CeEEEEeeC
Q 031406 109 DRHTCIAIR--DVSKLKMILDK-AGISYTLSK------SGRPAIFTRDPDA-NALEFTQVD 159 (160)
Q Consensus 109 ~~hi~f~v~--d~~~~~~~l~~-~G~~~~~~~------~g~~~~~~~DPdG-~~ie~~~~~ 159 (160)
+.|+++.|+ |++++.+...+ .|.+..... .+.+...+..|+| ..+++.++.
T Consensus 4 iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~ 64 (191)
T cd07250 4 IDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPA 64 (191)
T ss_pred eeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCC
Confidence 689999999 99999988755 788775421 2345667778765 567887653
No 142
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=85.48 E-value=4.7 Score=25.08 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=32.0
Q ss_pred ceEEEEEeCCHHHHHHHHHH-CCCeEeccCC-----CceEEEEEcCCCCeEEEEe
Q 031406 109 DRHTCIAIRDVSKLKMILDK-AGISYTLSKS-----GRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~~-----g~~~~~~~DPdG~~ie~~~ 157 (160)
+.|+++.|.|+++..+...+ .|.++..... +....++..-.+..+++..
T Consensus 2 l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 56 (128)
T PF00903_consen 2 LDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFL 56 (128)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEE
T ss_pred eEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeee
Confidence 68999999999999888877 6988865432 2223333333444455544
No 143
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=83.89 E-value=6.7 Score=25.30 Aligned_cols=56 Identities=5% Similarity=0.001 Sum_probs=34.6
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHh--cCCEEeeecCCCCC-CcceEEEEe-CCcEEEEEec
Q 031406 38 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPHDKL-PYRGAWLWV-GAEMIHLMEL 93 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~--lG~~~~~~~~~~~~-~~~~~~~~~-g~~~~~l~~~ 93 (160)
.+++|+++.|.|+++..+++..+ .|+++......... .....|+.. +|..+++...
T Consensus 61 ~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~ 120 (134)
T cd08360 61 AGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGAD 120 (134)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcc
Confidence 57899999999999999877776 57765432111111 111233443 5667777753
No 144
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=82.58 E-value=10 Score=24.68 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=33.3
Q ss_pred eeeeEEEEeC--CHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEEecC
Q 031406 39 SVHHVGILCE--NLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMELP 94 (160)
Q Consensus 39 ~i~hv~l~v~--D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~~~ 94 (160)
++.|+++.+. |++++.+...+ .|.++...........+..++.. +|..+++....
T Consensus 63 ~~~hiaf~v~~~dv~~~~~~l~~-~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 63 SYTHIAFSIEEEDFDHWYQRLKE-NDVNILPGRERDERDKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred CeeEEEEEecHHHHHHHHHHHHH-CCceEcCCccccCCCceEEEEECCCCCEEEEEeCC
Confidence 5789999987 89999888876 78886532221111223344443 34556665543
No 145
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=82.52 E-value=9.1 Score=24.65 Aligned_cols=28 Identities=7% Similarity=0.010 Sum_probs=22.5
Q ss_pred ceEEEEEeCCHHHHHHHHHH-CCCeEecc
Q 031406 109 DRHTCIAIRDVSKLKMILDK-AGISYTLS 136 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~-~G~~~~~~ 136 (160)
+.|+++.|+|++++.+...+ .|.++...
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~ 29 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVL 29 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEecc
Confidence 36999999999999888876 58877543
No 146
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=82.28 E-value=9.2 Score=23.50 Aligned_cols=29 Identities=7% Similarity=0.004 Sum_probs=24.0
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeee
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEA 68 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~ 68 (160)
...|+.+.|+|++++.+-... .|.++...
T Consensus 61 ~~~~~~f~v~di~~~~~~l~~-~g~~~~~~ 89 (114)
T cd07247 61 PGWLVYFAVDDVDAAAARVEA-AGGKVLVP 89 (114)
T ss_pred CeEEEEEEeCCHHHHHHHHHH-CCCEEEeC
Confidence 457899999999999998876 79887653
No 147
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=81.60 E-value=10 Score=23.64 Aligned_cols=26 Identities=4% Similarity=0.162 Sum_probs=21.7
Q ss_pred eeEEEEeCCHHHHHHHHHHhcCCEEee
Q 031406 41 HHVGILCENLERSLEFYQNILGLEINE 67 (160)
Q Consensus 41 ~hv~l~v~D~~~a~~Fy~~~lG~~~~~ 67 (160)
.++.+.|+|++++.+.... .|.+...
T Consensus 73 ~~~~~~v~di~~~~~~l~~-~G~~~~~ 98 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVE-AGAVLVS 98 (125)
T ss_pred EEEEEEcCCHHHHHHHHHH-cCCEecc
Confidence 4789999999999988876 7887754
No 148
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=81.58 E-value=9.6 Score=24.00 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=22.1
Q ss_pred eEEEEEeCCHHHHHHHHHHCCCeEec
Q 031406 110 RHTCIAIRDVSKLKMILDKAGISYTL 135 (160)
Q Consensus 110 ~hi~f~v~d~~~~~~~l~~~G~~~~~ 135 (160)
.++.+.|+|+++..+.....|.+...
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFNP 27 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEcc
Confidence 57899999999999888888988754
No 149
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=80.58 E-value=14 Score=24.54 Aligned_cols=56 Identities=11% Similarity=-0.073 Sum_probs=32.8
Q ss_pred eeeeeEEEEeCCHHHHHHHHHH--hcCCEEeeecCCCCCC-cceEEEEe-CCcEEEEEec
Q 031406 38 VSVHHVGILCENLERSLEFYQN--ILGLEINEARPHDKLP-YRGAWLWV-GAEMIHLMEL 93 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~--~lG~~~~~~~~~~~~~-~~~~~~~~-g~~~~~l~~~ 93 (160)
.+++|+++.|.|++++.+.+.. ..|+++.........+ ....++.. +|..++|..-
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~ 125 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTD 125 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcC
Confidence 5789999999999999854443 2677765421111111 11223333 4667777643
No 150
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=80.27 E-value=15 Score=24.51 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=33.1
Q ss_pred CCceEEEEEeCCHHHHHHHHHH-CCCeEeccC------C-CceEEEEE-cCCCCeEEEEe
Q 031406 107 GRDRHTCIAIRDVSKLKMILDK-AGISYTLSK------S-GRPAIFTR-DPDANALEFTQ 157 (160)
Q Consensus 107 ~~~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~------~-g~~~~~~~-DPdG~~ie~~~ 157 (160)
.++.|+++.|+|++++.+.... .|.++.... . +....++. +...+.+.+.+
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 67 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAE 67 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEc
Confidence 3479999999999999888866 788874321 1 22333333 44456666654
No 151
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=79.74 E-value=9 Score=23.46 Aligned_cols=53 Identities=19% Similarity=0.370 Sum_probs=31.5
Q ss_pred eeeeEEEEe--CCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEEe
Q 031406 39 SVHHVGILC--ENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 92 (160)
Q Consensus 39 ~i~hv~l~v--~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~ 92 (160)
.+.|+.+.| .|+++..+-..+ .|.++..............++.- +|..++++.
T Consensus 55 ~~~hiaf~v~~~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 55 TYTHIAFQIQSEEFDEYTERLKA-LGVEMKPERPRVQGEGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred CccEEEEEcCHHHHHHHHHHHHH-cCCccCCCccccCCCceEEEEECCCCCEEEEEe
Confidence 568999999 467777777766 78876543222111223344443 466777764
No 152
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=79.40 E-value=13 Score=23.30 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=24.5
Q ss_pred ceEEEEEeCCHHHHHHHHHH-CCCeEeccC
Q 031406 109 DRHTCIAIRDVSKLKMILDK-AGISYTLSK 137 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~ 137 (160)
+.|+.+.|.|++++.+...+ .|.++....
T Consensus 5 l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 5 PGHVQLRVLDLEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred EeEEEEEeCCHHHHHHHHHhccCCEeeeec
Confidence 68999999999999988876 799876543
No 153
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=79.16 E-value=12 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=22.8
Q ss_pred CceEEEEEeCCHHHHHHHHHH-CCCeEec
Q 031406 108 RDRHTCIAIRDVSKLKMILDK-AGISYTL 135 (160)
Q Consensus 108 ~~~hi~f~v~d~~~~~~~l~~-~G~~~~~ 135 (160)
.+.|+.+.|+|++++.+...+ .|.++..
T Consensus 4 ~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~ 32 (144)
T cd07239 4 KISHVVLNSPDVDKTVAFYEDVLGFRVSD 32 (144)
T ss_pred eeeEEEEECCCHHHHHHHHHhcCCCEEEE
Confidence 368999999999999888855 6887753
No 154
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=79.10 E-value=17 Score=24.71 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=47.9
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCC--CCcceEEEEeC-----CcEEEEEecCCCCC-CCCCCCCCCC
Q 031406 37 VVSVHHVGILCENLERSLEFYQNILGLEINEARPHDK--LPYRGAWLWVG-----AEMIHLMELPNPDP-LSGRPEHGGR 108 (160)
Q Consensus 37 ~~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~--~~~~~~~~~~g-----~~~~~l~~~~~~~~-~~~~~~~~~~ 108 (160)
-.++..+++.+.|+++..+-++. .|++.......++ ..+...++..+ +....+++.....+ ....+....+
T Consensus 75 ~~g~~~~~l~t~d~~~~~~~l~~-~G~~~~~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~ 153 (175)
T PF13468_consen 75 GEGLYGWALRTDDIEAVAARLRA-AGLDAGSRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALG 153 (175)
T ss_dssp --EEEEEEEE-S-HHHHHHHHHT-TT-EEEEEEEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEE
T ss_pred CCCeEEEEEecCCHHHHHHHHHh-cCCCCCCcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccce
Confidence 46889999999999999999986 8875222111111 11222333322 12344454444322 0123333446
Q ss_pred ceEEEEEeCCHHHHHHHHHH
Q 031406 109 DRHTCIAIRDVSKLKMILDK 128 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~ 128 (160)
+.++.+.++|.+++.+++.+
T Consensus 154 i~~v~i~~~d~~~~~~~~~~ 173 (175)
T PF13468_consen 154 ITRVVIAVPDPDAAAARYAR 173 (175)
T ss_dssp EEEEEEEETTHHHHHHHHHH
T ss_pred EEEEEEEeCCHHHHHHHHHh
Confidence 78999999999888777654
No 155
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=78.85 E-value=13 Score=23.12 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=24.9
Q ss_pred CceEEEEEeCCHHHHHHHHHH-CCCeEeccC
Q 031406 108 RDRHTCIAIRDVSKLKMILDK-AGISYTLSK 137 (160)
Q Consensus 108 ~~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~ 137 (160)
.+.|+.+.|+|++++.+.+.+ .|.++....
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~ 34 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEED 34 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeccC
Confidence 368999999999999988877 798876543
No 156
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=78.73 E-value=14 Score=23.41 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=30.7
Q ss_pred ceEEEEEeCCHHHHHHHHHH-CCCeEeccCCCceEEEEE-cCCCCeEEEE
Q 031406 109 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTR-DPDANALEFT 156 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~~g~~~~~~~-DPdG~~ie~~ 156 (160)
+.|+++.|.|++++.+...+ .|.+....... ..++. +.+++.+.+.
T Consensus 7 l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~~--~~~l~~~~~~~~i~l~ 54 (124)
T cd08361 7 IAYVRLGTRDLAGATRFATDILGLQVAERTAK--ATYFRSDARDHTLVYI 54 (124)
T ss_pred eeEEEEeeCCHHHHHHHHHhccCceeccCCCC--eEEEEcCCccEEEEEE
Confidence 68999999999999988877 59887544322 33443 3344555543
No 157
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=77.65 E-value=14 Score=22.86 Aligned_cols=54 Identities=6% Similarity=-0.162 Sum_probs=33.5
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEEec
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLMEL 93 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~~ 93 (160)
.++.|+++.|.|.++..+..+ .+|........ ...+....++.- +|..+++...
T Consensus 56 ~~~~~~af~v~~~~~~~~~~~-~~g~~~~~~~~-~~~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 56 ARFVGAAFEAASRADLEKAAA-LPGASVIDDLE-APGGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CcccEEEEEECCHHHHHHHHH-cCCCeeecCCC-CCCCceEEEEECCCCCEEEEEec
Confidence 468899999999998888865 48887653211 122222344443 4556776554
No 158
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=77.24 E-value=16 Score=23.39 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=20.5
Q ss_pred eeeeEEEEeC--CHHHHHHHHHHhcCCEEee
Q 031406 39 SVHHVGILCE--NLERSLEFYQNILGLEINE 67 (160)
Q Consensus 39 ~i~hv~l~v~--D~~~a~~Fy~~~lG~~~~~ 67 (160)
+++|+++.|. |+++..+-.++ .|++...
T Consensus 66 ~~~Hiaf~v~~~~ld~~~~~l~~-~gv~~~~ 95 (131)
T cd08364 66 TYNHIAFKISDSDVDEYTERIKA-LGVEMKP 95 (131)
T ss_pred CceEEEEEcCHHHHHHHHHHHHH-CCCEEec
Confidence 5899999998 57666666655 7887543
No 159
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=76.73 E-value=15 Score=22.68 Aligned_cols=52 Identities=6% Similarity=-0.091 Sum_probs=30.9
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEE
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLM 91 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~ 91 (160)
...|+.+.|.|++++.+-... .|.+..........+.+..++.. .|..++|.
T Consensus 68 ~~~~~~~~v~d~~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~ 120 (122)
T cd07246 68 TPVSLHLYVEDVDATFARAVA-AGATSVMPPADQFWGDRYGGVRDPFGHRWWIA 120 (122)
T ss_pred ceEEEEEEeCCHHHHHHHHHH-CCCeEecCcccccccceEEEEECCCCCEEEEe
Confidence 456999999999988776655 68876543222233333444444 34445444
No 160
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=75.56 E-value=15 Score=22.22 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=21.2
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCE
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLE 64 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~ 64 (160)
+-.|+.+.|.|++++.+-.++ .|.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~l~~-~G~~ 82 (112)
T cd08349 58 RGGSVYIEVEDVDALYAELKA-KGAD 82 (112)
T ss_pred CcEEEEEEeCCHHHHHHHHHH-cCCc
Confidence 445899999999999999877 7887
No 161
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=75.01 E-value=17 Score=22.60 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=32.3
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCC-EEeeecCCCCCCcceEEEEe-CCcEEEEEe
Q 031406 39 SVHHVGILCENLERSLEFYQNILGL-EINEARPHDKLPYRGAWLWV-GAEMIHLME 92 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~-~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~ 92 (160)
...|+.+.|.|+++..+-.++ .|. +........+.+.+..++.. +|..+++.+
T Consensus 64 ~~~~l~~~v~dvd~~~~~l~~-~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~ 118 (120)
T cd09011 64 NNFELYFEEEDFDAFLDKLKR-YDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGE 118 (120)
T ss_pred CceEEEEEehhhHHHHHHHHh-cCCcEEecCcccCCCccEEEEEECCCCCEEEEec
Confidence 346899999999999999987 653 44432222223334455554 344555543
No 162
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=74.33 E-value=18 Score=23.09 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=30.4
Q ss_pred eEEEEEeCCHHHHHHHHHH-CCCeEeccCC--C-ceEEEEEcCC-CCeEEEEe
Q 031406 110 RHTCIAIRDVSKLKMILDK-AGISYTLSKS--G-RPAIFTRDPD-ANALEFTQ 157 (160)
Q Consensus 110 ~hi~f~v~d~~~~~~~l~~-~G~~~~~~~~--g-~~~~~~~DPd-G~~ie~~~ 157 (160)
.|+++.|.|++++.+.+.+ .|.++..... + ....++...+ +..+.+..
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 53 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFP 53 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEc
Confidence 4899999999999988866 6988754321 2 1233444333 34565554
No 163
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.01 E-value=10 Score=20.80 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.9
Q ss_pred ceEEEEEeCCHHHHHHHHHHCCCeE
Q 031406 109 DRHTCIAIRDVSKLKMILDKAGISY 133 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~~G~~~ 133 (160)
...+.|.+++.+.+.+.|+++|+++
T Consensus 40 ~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 40 KALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred eEEEEEEeCCHHHHHHHHHHCCceE
Confidence 3668899999999999999999875
No 164
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=73.79 E-value=18 Score=22.30 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=23.5
Q ss_pred CceEEEEEeCCHHHHHHHHHH-CCCeEecc
Q 031406 108 RDRHTCIAIRDVSKLKMILDK-AGISYTLS 136 (160)
Q Consensus 108 ~~~hi~f~v~d~~~~~~~l~~-~G~~~~~~ 136 (160)
++.|+.+.|.|++++.+...+ .|.+....
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred eeeEEEEecCCHHHHHHHHHhCcCcEEEEe
Confidence 478999999999999888876 68877543
No 165
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=73.38 E-value=20 Score=22.52 Aligned_cols=47 Identities=19% Similarity=0.291 Sum_probs=30.3
Q ss_pred ceEEEEEeCCHHHHHHHHHH-CCCeEeccCCCceEEEEEcCCCCeEEEEe
Q 031406 109 DRHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~-~G~~~~~~~~g~~~~~~~DPdG~~ie~~~ 157 (160)
+.|+++.|.|++++.+...+ .|.+...... ...++...+|..+++.+
T Consensus 5 ~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~~~~~~~~~~~l~~~~ 52 (123)
T cd08351 5 LNHTIVPARDREASAEFYAEILGLPWAKPFG--PFAVVKLDNGVSLDFAQ 52 (123)
T ss_pred EeEEEEEcCCHHHHHHHHHHhcCCEeeeccC--CEEEEEcCCCcEEEEec
Confidence 68999999999999888855 5887765321 12333333455555544
No 166
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=73.11 E-value=23 Score=23.08 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=22.8
Q ss_pred ceEEEEEeCCHHHHHHHHH-HCCCeEec
Q 031406 109 DRHTCIAIRDVSKLKMILD-KAGISYTL 135 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~-~~G~~~~~ 135 (160)
+.|+++.|.|+++..+-.. ..|.++..
T Consensus 3 ~~Hv~irV~DlerSi~FY~~vLG~~~~~ 30 (127)
T cd08358 3 ALHFVFKVGNRNKTIKFYREVLGMKVLR 30 (127)
T ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEe
Confidence 5899999999999998885 47998744
No 167
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=72.49 E-value=20 Score=22.40 Aligned_cols=54 Identities=11% Similarity=0.021 Sum_probs=27.8
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHh--cCCEEeeecCCCCCCcceEEEEe-CCcEEEEEe
Q 031406 38 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPHDKLPYRGAWLWV-GAEMIHLME 92 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~--lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~~ 92 (160)
.+++|+++.|.+.+.-.+++..+ .|.++.........+ ...++.. +|..+++..
T Consensus 61 ~~~~h~af~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iEl~~ 117 (121)
T cd09013 61 AGLGHIAWRASSPEALERRVAALEASGLGIGWIEGDPGHG-KAYRFRSPDGHPMELYW 117 (121)
T ss_pred CceEEEEEEcCCHHHHHHHHHHHHHcCCccccccCCCCCc-ceEEEECCCCCEEEEEE
Confidence 46899999998655444444332 576653211111222 2233333 455666654
No 168
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.91 E-value=8 Score=22.61 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=26.7
Q ss_pred HHHHHHHHHHCCCeEeccC---CC---ceEEEEEcCCCCeE
Q 031406 119 VSKLKMILDKAGISYTLSK---SG---RPAIFTRDPDANAL 153 (160)
Q Consensus 119 ~~~~~~~l~~~G~~~~~~~---~g---~~~~~~~DPdG~~i 153 (160)
+.+..+.+...|+.+.... .| ...||+.|.+|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 4567788899999996542 22 36799999999876
No 169
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=71.84 E-value=21 Score=22.00 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=28.7
Q ss_pred EEEEeCCHHHHHHHHHHC-CCeEeccCCCceEEEEEcCCCCeEEEEe
Q 031406 112 TCIAIRDVSKLKMILDKA-GISYTLSKSGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 112 i~f~v~d~~~~~~~l~~~-G~~~~~~~~g~~~~~~~DPdG~~ie~~~ 157 (160)
|.+.|+|++++.+...+. |.++..... ....++.. +|..+++.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~-~~~~~~~~-~~~~~~l~~ 46 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN-DGVAFFQL-GGLVLALFP 46 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC-CceEEEEc-CCeEEEEec
Confidence 678999999999888765 888765522 22233333 555666654
No 170
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=70.97 E-value=29 Score=23.39 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=44.9
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEeee-cCCCCCCcceEE----EEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEE
Q 031406 40 VHHVGILCENLERSLEFYQNILGLEINEA-RPHDKLPYRGAW----LWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCI 114 (160)
Q Consensus 40 i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~-~~~~~~~~~~~~----~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f 114 (160)
++|+.++|++.+.+.+|-+.++..-..-. ...++.++...- +.+++.++..++.+-+... ..| ..+.-||-+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~k-~Yp--~eGWEHIE~ 78 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWSISIVELPFPKDK-KYP--QEGWEHIEI 78 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCC-CCC--CCCceEEEE
Confidence 58999999999999999888775532221 111121111111 3345677888777654321 122 244689999
Q ss_pred EeC
Q 031406 115 AIR 117 (160)
Q Consensus 115 ~v~ 117 (160)
.++
T Consensus 79 Vlp 81 (149)
T cd07268 79 VIP 81 (149)
T ss_pred Eec
Confidence 887
No 171
>PRK11700 hypothetical protein; Provisional
Probab=70.03 E-value=35 Score=23.95 Aligned_cols=77 Identities=21% Similarity=0.202 Sum_probs=45.9
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeee-cCCCCCCcceEE----EEeCCcEEEEEecCCCCCCCCCCCCCCCceEE
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEA-RPHDKLPYRGAW----LWVGAEMIHLMELPNPDPLSGRPEHGGRDRHT 112 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~-~~~~~~~~~~~~----~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi 112 (160)
-.++||.++|++.+.|.+|-+.++..-..-. ...++.++-..- +.+++.++..++.+-+... ..|. .+.-||
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~k-~Yp~--eGWEHI 114 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGEK-RYPH--EGWEHI 114 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCCC-CCCC--CCceEE
Confidence 4679999999999999999888664432221 111221111111 3335667887777644321 1222 446899
Q ss_pred EEEeC
Q 031406 113 CIAIR 117 (160)
Q Consensus 113 ~f~v~ 117 (160)
-+.++
T Consensus 115 ElVlp 119 (187)
T PRK11700 115 ELVLP 119 (187)
T ss_pred EEEec
Confidence 99987
No 172
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=69.50 E-value=29 Score=22.75 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=32.6
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHh--cCCEEeeecCCCC-CCcceEEEEe-CCcEEEEEec
Q 031406 38 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPHDK-LPYRGAWLWV-GAEMIHLMEL 93 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~--lG~~~~~~~~~~~-~~~~~~~~~~-g~~~~~l~~~ 93 (160)
.+++|+++.|.|+++..+.+..+ .|.++........ ......++.. +|..++|...
T Consensus 66 ~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 66 GKLHHFSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 46899999999999865544442 6777543211111 1112334443 5668888653
No 173
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.87 E-value=22 Score=19.96 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=20.8
Q ss_pred eEEEEEeC--CHHHHHHHHHHCCCeEecc
Q 031406 110 RHTCIAIR--DVSKLKMILDKAGISYTLS 136 (160)
Q Consensus 110 ~hi~f~v~--d~~~~~~~l~~~G~~~~~~ 136 (160)
..+.|.++ +.+++.+.|+++|+++..+
T Consensus 43 ~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 43 KILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred EEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 34555554 8889999999999988754
No 174
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=65.68 E-value=30 Score=21.50 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=30.4
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEe-CCcEEEEE
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWV-GAEMIHLM 91 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~l~ 91 (160)
.-.++.+.|.|++++.+-... .|.++.........+....++.. +|..+++.
T Consensus 68 ~~~~~~~~v~d~d~~~~~l~~-~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~ 120 (122)
T cd08355 68 GTQGVYVVVDDVDAHYERARA-AGAEILREPTDTPYGSREFTARDPEGNLWTFG 120 (122)
T ss_pred ceEEEEEEECCHHHHHHHHHH-CCCEEeeCccccCCCcEEEEEECCCCCEEEEe
Confidence 446899999999888777665 68877643222222333343443 34444443
No 175
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=65.12 E-value=36 Score=22.30 Aligned_cols=58 Identities=7% Similarity=-0.042 Sum_probs=32.6
Q ss_pred eeeeeeEEEEeCCHHHHHHHHHHh--cCCEEeeecCC-CCCCcceEEEEe-CCcEEEEEecC
Q 031406 37 VVSVHHVGILCENLERSLEFYQNI--LGLEINEARPH-DKLPYRGAWLWV-GAEMIHLMELP 94 (160)
Q Consensus 37 ~~~i~hv~l~v~D~~~a~~Fy~~~--lG~~~~~~~~~-~~~~~~~~~~~~-g~~~~~l~~~~ 94 (160)
..+++|+++.|.|.+.-.++++.+ .|.+....... ........|+.. ++..+++....
T Consensus 54 ~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~ 115 (141)
T cd07258 54 SSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGM 115 (141)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCc
Confidence 358999999999887655555543 57765432111 111122234444 46677775543
No 176
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=62.47 E-value=35 Score=21.21 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=20.0
Q ss_pred eeEEEEeCCHHHHHHHHHHhcCCEE
Q 031406 41 HHVGILCENLERSLEFYQNILGLEI 65 (160)
Q Consensus 41 ~hv~l~v~D~~~a~~Fy~~~lG~~~ 65 (160)
.|+.+.|.|+++..+-.++ .|.+.
T Consensus 60 ~~~~~~v~dvd~~~~~l~~-~G~~~ 83 (120)
T cd08350 60 FGCCLRLPDVAALHAEFRA-AGLPE 83 (120)
T ss_pred ceEEEEeCCHHHHHHHHHH-hCccc
Confidence 4688999999999999876 78763
No 177
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=60.10 E-value=40 Score=21.03 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=23.2
Q ss_pred ceEEEEEeCCHHHHHHHHHH-CCCeEecc
Q 031406 109 DRHTCIAIRDVSKLKMILDK-AGISYTLS 136 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~-~G~~~~~~ 136 (160)
+.|+.+.|.|++++.+...+ .|.+....
T Consensus 2 i~hv~l~v~d~~~~~~FY~~vLG~~~~~~ 30 (121)
T cd07244 2 INHITLAVSDLERSVAFYVDLLGFKLHVR 30 (121)
T ss_pred cceEEEEECCHHHHHHHHHHhcCCEEEEe
Confidence 57999999999999888865 68887543
No 178
>PRK06724 hypothetical protein; Provisional
Probab=59.89 E-value=44 Score=21.51 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=30.4
Q ss_pred eeeeEEEEe---CCHHHHHHHHHHhcCCEEeeecCC-C--CCCcceEEEEe-CCcEEEEEec
Q 031406 39 SVHHVGILC---ENLERSLEFYQNILGLEINEARPH-D--KLPYRGAWLWV-GAEMIHLMEL 93 (160)
Q Consensus 39 ~i~hv~l~v---~D~~~a~~Fy~~~lG~~~~~~~~~-~--~~~~~~~~~~~-g~~~~~l~~~ 93 (160)
++.|+++.| .|+++..+...+ .|.+....... + ..+....++.. +|..+++...
T Consensus 63 g~~h~af~v~~~~dvd~~~~~l~~-~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 63 GPRHICYQAINRKVVDEVAEFLSS-TKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred CceeEEEecCChHHHHHHHHHHHH-CCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 678999998 556666666554 78876532111 1 12223343443 4567777554
No 179
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=59.69 E-value=12 Score=28.39 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=22.8
Q ss_pred CCCCceEEEEEe------CCHHHHHHHHHHCCCeEe
Q 031406 105 HGGRDRHTCIAI------RDVSKLKMILDKAGISYT 134 (160)
Q Consensus 105 ~~~~~~hi~f~v------~d~~~~~~~l~~~G~~~~ 134 (160)
.|...+|+...| .|++++.+.++++|+.+.
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 456679999999 999999999999999987
No 180
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.57 E-value=25 Score=20.92 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=22.9
Q ss_pred eEEEEEeCC----HHHHHHHHHHCCCeEecc
Q 031406 110 RHTCIAIRD----VSKLKMILDKAGISYTLS 136 (160)
Q Consensus 110 ~hi~f~v~d----~~~~~~~l~~~G~~~~~~ 136 (160)
..+.++++| ++++.+.|+++|+++...
T Consensus 42 v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~ 72 (85)
T cd04906 42 IFVGVSVANGAEELAELLEDLKSAGYEVVDL 72 (85)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHCCCCeEEC
Confidence 567889888 889999999999998653
No 181
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=58.74 E-value=25 Score=19.36 Aligned_cols=41 Identities=12% Similarity=0.129 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHCCCeEeccCCCceEEEEEcCCCCeEEEEeeC
Q 031406 118 DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 118 d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
++++.-.+....|-.+......+. .-..+|||..+-+.+..
T Consensus 5 ~ls~~ea~~l~~Gr~l~~~~~~g~-~aa~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 5 ELSAEEARDLRHGRRLPAAGPPGP-VAAFAPDGRLVALLEER 45 (56)
T ss_dssp E--HHHHHHHHTT---B-----S--EEEE-TTS-EEEEEEEE
T ss_pred ECCHHHHHHHhCCCccCCCCCCce-EEEECCCCcEEEEEEcc
Confidence 456666666777887766533333 55679999999998753
No 182
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.11 E-value=24 Score=20.78 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=26.1
Q ss_pred HHHHHHHHHHCCCeEeccC---CC---ceEEEEEcCCCCeE
Q 031406 119 VSKLKMILDKAGISYTLSK---SG---RPAIFTRDPDANAL 153 (160)
Q Consensus 119 ~~~~~~~l~~~G~~~~~~~---~g---~~~~~~~DPdG~~i 153 (160)
+.++...|...|+.+.... .| ...||++|.+|..+
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl 55 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTL 55 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCcc
Confidence 4456788889999986532 22 46899999999876
No 183
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=56.71 E-value=55 Score=22.09 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=32.8
Q ss_pred ceEEEEEeCCHH---HHHHHHHHCCCeEeccCCCceEEEEEcCC------CCeEEEEee
Q 031406 109 DRHTCIAIRDVS---KLKMILDKAGISYTLSKSGRPAIFTRDPD------ANALEFTQV 158 (160)
Q Consensus 109 ~~hi~f~v~d~~---~~~~~l~~~G~~~~~~~~g~~~~~~~DPd------G~~ie~~~~ 158 (160)
..|+|++|.+.+ ++.+.|.+.|-.++...=++|-+++.+-+ |..|+++|-
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~I~cvEL 60 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWSISIVEL 60 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEe
Confidence 369999999765 45677778888777654445555554433 566666663
No 184
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=53.57 E-value=27 Score=23.42 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=23.5
Q ss_pred CceEEEEEeCCHHHHHHHHHH-CCCeEec
Q 031406 108 RDRHTCIAIRDVSKLKMILDK-AGISYTL 135 (160)
Q Consensus 108 ~~~hi~f~v~d~~~~~~~l~~-~G~~~~~ 135 (160)
++.|+++.|.|+++..+...+ .|.++..
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVSE 31 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEEE
Confidence 368999999999999888876 7987753
No 185
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=53.27 E-value=51 Score=20.20 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=30.1
Q ss_pred eEEEEEeCCHHHHHHHHHH-CCCeEeccCCCceEEEEEcCCCCeEEEEe
Q 031406 110 RHTCIAIRDVSKLKMILDK-AGISYTLSKSGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 110 ~hi~f~v~d~~~~~~~l~~-~G~~~~~~~~g~~~~~~~DPdG~~ie~~~ 157 (160)
.|+++.|.|++++.+...+ .|.++...+. ....++.-.++..+.+.+
T Consensus 2 ~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~-~~~~~l~~~~~~~~~l~~ 49 (122)
T cd08354 2 LETALYVDDLEAAEAFYEDVLGLELMLKED-RRLAFFWVGGRGMLLLFD 49 (122)
T ss_pred eEEEEEeCCHHHHHHHHHhccCCEEeecCC-CceEEEEcCCCcEEEEEe
Confidence 4789999999999988864 6988765322 223344433334444443
No 186
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=52.37 E-value=39 Score=18.77 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=19.6
Q ss_pred EEEEEeCCHHHHHHHHHHCCCeEe
Q 031406 111 HTCIAIRDVSKLKMILDKAGISYT 134 (160)
Q Consensus 111 hi~f~v~d~~~~~~~l~~~G~~~~ 134 (160)
.+-+.++|.+++.+.|+++|+++.
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEEE
Confidence 356667898899999999999864
No 187
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=51.99 E-value=10 Score=27.40 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=30.4
Q ss_pred EEEEeCCHHHHHHHHHHCCCeEeccC--CCceEEEEEcCCCCeEEEE
Q 031406 112 TCIAIRDVSKLKMILDKAGISYTLSK--SGRPAIFTRDPDANALEFT 156 (160)
Q Consensus 112 i~f~v~d~~~~~~~l~~~G~~~~~~~--~g~~~~~~~DPdG~~ie~~ 156 (160)
.+|...|-+.+++.| .|+++...+ ++...|+++|||||-.-++
T Consensus 182 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (228)
T PRK06704 182 TSIREERPELLTKLL--PTIDFTKLPSKQPVLLFNVKQPSSYSCMLC 226 (228)
T ss_pred HHHHhcCHHHHHHHh--ccceeeecccccceEEEEeeCCCccchhhc
Confidence 355556777777744 788887644 4567899999999876543
No 188
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=50.91 E-value=55 Score=19.90 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=19.0
Q ss_pred eeeeEEEEeCC---HHHHHHHHHHhcCCEEee
Q 031406 39 SVHHVGILCEN---LERSLEFYQNILGLEINE 67 (160)
Q Consensus 39 ~i~hv~l~v~D---~~~a~~Fy~~~lG~~~~~ 67 (160)
+..|+.+.|.| ++++.+..++ .|.++..
T Consensus 59 ~~~~~~~~v~~~~~~~~~~~~~~~-~g~~v~~ 89 (114)
T cd07261 59 GGSELAFMVDDGAAVDALYAEWQA-KGVKIIQ 89 (114)
T ss_pred CceEEEEEcCCHHHHHHHHHHHHH-CCCeEec
Confidence 56899999987 4455555544 6777654
No 189
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.93 E-value=15 Score=26.51 Aligned_cols=21 Identities=29% Similarity=0.684 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHhcCCEEeee
Q 031406 48 ENLERSLEFYQNILGLEINEA 68 (160)
Q Consensus 48 ~D~~~a~~Fy~~~lG~~~~~~ 68 (160)
.|+.++..||.+.||+++...
T Consensus 145 a~~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred hccHHHHHHHHHhcCceeeec
Confidence 478889999999999998653
No 190
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=49.51 E-value=70 Score=20.72 Aligned_cols=32 Identities=22% Similarity=0.502 Sum_probs=23.0
Q ss_pred eeeeeEEEEe-CCHHHHHHHHHHhcCCEEeeecC
Q 031406 38 VSVHHVGILC-ENLERSLEFYQNILGLEINEARP 70 (160)
Q Consensus 38 ~~i~hv~l~v-~D~~~a~~Fy~~~lG~~~~~~~~ 70 (160)
.++..+.+.| .+-.++.+||++ +||+......
T Consensus 109 ~~~~~i~~~v~~~N~~~i~~~~~-~GF~~~g~~~ 141 (155)
T PF13420_consen 109 LGIHKIYLEVFSSNEKAINFYKK-LGFEEEGELK 141 (155)
T ss_dssp TT-CEEEEEEETT-HHHHHHHHH-TTEEEEEEEE
T ss_pred cCeEEEEEEEecCCHHHHHHHHh-CCCEEEEEEe
Confidence 4567777655 778889999987 9999887543
No 191
>PRK11700 hypothetical protein; Provisional
Probab=49.41 E-value=78 Score=22.26 Aligned_cols=50 Identities=8% Similarity=0.068 Sum_probs=33.1
Q ss_pred ceEEEEEeCCHH---HHHHHHHHCCCeEeccCCCceEEEEEcCC------CCeEEEEee
Q 031406 109 DRHTCIAIRDVS---KLKMILDKAGISYTLSKSGRPAIFTRDPD------ANALEFTQV 158 (160)
Q Consensus 109 ~~hi~f~v~d~~---~~~~~l~~~G~~~~~~~~g~~~~~~~DPd------G~~ie~~~~ 158 (160)
..|+|++|.+.+ ++.+.+.+.|-.++...=.||-+++.+-+ |..|+++|-
T Consensus 40 ~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvEL 98 (187)
T PRK11700 40 ADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVEL 98 (187)
T ss_pred CcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEe
Confidence 479999999654 45677788888776654445555554433 566666663
No 192
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=48.42 E-value=7.8 Score=20.38 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=18.3
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcC
Q 031406 39 SVHHVGILCENLERSLEFYQNILG 62 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG 62 (160)
.++...+.+++.++.+.||+..|-
T Consensus 11 p~De~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 11 PVDESGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred ccccCCCccccccchhHHHHHHHH
Confidence 345566667889999999998664
No 193
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=46.91 E-value=47 Score=19.78 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=16.8
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEeee
Q 031406 44 GILCENLERSLEFYQNILGLEINEA 68 (160)
Q Consensus 44 ~l~v~D~~~a~~Fy~~~lG~~~~~~ 68 (160)
.....+-+.|.++|++ |||+....
T Consensus 59 l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 59 LYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEEECCCHHHHHHHHH-cCCEEEEE
Confidence 3344788899999987 99998753
No 194
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=46.33 E-value=19 Score=17.38 Aligned_cols=19 Identities=26% Similarity=0.601 Sum_probs=14.4
Q ss_pred EeCCHHHHHHHHHHhcCCE
Q 031406 46 LCENLERSLEFYQNILGLE 64 (160)
Q Consensus 46 ~v~D~~~a~~Fy~~~lG~~ 64 (160)
...|.++|.++|++.|.+.
T Consensus 11 ~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HCT-HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 4579999999999977543
No 195
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.02 E-value=37 Score=19.05 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=20.4
Q ss_pred ceEEEEEeC---CHHHHHHHHHHCCCeEe
Q 031406 109 DRHTCIAIR---DVSKLKMILDKAGISYT 134 (160)
Q Consensus 109 ~~hi~f~v~---d~~~~~~~l~~~G~~~~ 134 (160)
..++.+++. .++++.+.|+++|+++.
T Consensus 39 ~v~v~ie~~~~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 39 RVLVGIQVPDREDLAELKERLEALGYPYV 67 (68)
T ss_pred EEEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 456788886 57788999999999753
No 196
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=44.65 E-value=33 Score=19.44 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=17.9
Q ss_pred eeeeEEEEe-CCHHHHHHHHHHhcCCE
Q 031406 39 SVHHVGILC-ENLERSLEFYQNILGLE 64 (160)
Q Consensus 39 ~i~hv~l~v-~D~~~a~~Fy~~~lG~~ 64 (160)
++..+.+.+ .+-..+..||++ +||+
T Consensus 58 g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 58 GIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred CccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 466676666 555568899987 8875
No 197
>PRK10562 putative acetyltransferase; Provisional
Probab=42.13 E-value=87 Score=20.19 Aligned_cols=27 Identities=22% Similarity=0.568 Sum_probs=19.1
Q ss_pred eEEEEe-CCHHHHHHHHHHhcCCEEeeec
Q 031406 42 HVGILC-ENLERSLEFYQNILGLEINEAR 69 (160)
Q Consensus 42 hv~l~v-~D~~~a~~Fy~~~lG~~~~~~~ 69 (160)
.+.+.| .+-..+..||++ +||+.....
T Consensus 99 ~~~~~v~~~N~~s~~~y~k-~Gf~~~~~~ 126 (145)
T PRK10562 99 HLSLEVYQKNQRAVNFYHA-QGFRIVDSA 126 (145)
T ss_pred eEEEEEEcCChHHHHHHHH-CCCEEcccc
Confidence 344444 455689999987 999987643
No 198
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=40.78 E-value=1e+02 Score=20.17 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=13.5
Q ss_pred eEEEEEcCCCCeEEEEe
Q 031406 141 PAIFTRDPDANALEFTQ 157 (160)
Q Consensus 141 ~~~~~~DPdG~~ie~~~ 157 (160)
+..++.|++|.++....
T Consensus 121 ~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 121 RISFLIDADGKIEHVFD 137 (154)
T ss_pred eEEEEECCCCEEEEEEc
Confidence 45689999998887764
No 199
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=40.49 E-value=43 Score=23.52 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=28.3
Q ss_pred ceEEEEEeCCHH---HHHHHHHHCCCeEeccCCCceEEEEEc---C---CCCeEEEEe
Q 031406 109 DRHTCIAIRDVS---KLKMILDKAGISYTLSKSGRPAIFTRD---P---DANALEFTQ 157 (160)
Q Consensus 109 ~~hi~f~v~d~~---~~~~~l~~~G~~~~~~~~g~~~~~~~D---P---dG~~ie~~~ 157 (160)
..|+|++|.+.+ ++.+.+.+.|-.++...=.||-+++.+ | .|..|++.|
T Consensus 35 ~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vE 92 (185)
T PF06185_consen 35 IDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVE 92 (185)
T ss_dssp EEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEE
T ss_pred CcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEE
Confidence 589999998654 456777778865554432344444332 2 356666665
No 200
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=39.54 E-value=54 Score=21.35 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=22.5
Q ss_pred eeeeEEEEe-CCHHHHHHHHHHhcCCEEeeec
Q 031406 39 SVHHVGILC-ENLERSLEFYQNILGLEINEAR 69 (160)
Q Consensus 39 ~i~hv~l~v-~D~~~a~~Fy~~~lG~~~~~~~ 69 (160)
++..+.+.| .+-.++.+||++ +||+.....
T Consensus 112 ~~~~i~l~v~~~N~~a~~~y~k-~GF~~~g~~ 142 (162)
T PRK10140 112 RVDRIELTVFVDNAPAIKVYKK-YGFEIEGTG 142 (162)
T ss_pred CccEEEEEEEcCCHHHHHHHHH-CCCEEEeec
Confidence 556777776 556778999986 999987653
No 201
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=39.24 E-value=1.3e+02 Score=20.98 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=50.8
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeCCH
Q 031406 40 VHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDV 119 (160)
Q Consensus 40 i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~ 119 (160)
..-+.+.+.|.+.+.+-+.. |||....... ..+ .....++..++|-...+- |.+.-|-..++|-
T Consensus 78 r~E~E~~v~D~~~~~~il~~-LGF~~~~~Vk----K~R-~iY~~~~~~i~lD~VegL----------G~F~EIE~~~~d~ 141 (178)
T COG1437 78 REEIEIEVSDVEKALEILKR-LGFKEVAVVK----KTR-EIYKVGNVTIELDAVEGL----------GDFLEIEVMVDDE 141 (178)
T ss_pred eeeEEEEeCCHHHHHHHHHH-cCCceeeEEE----EEE-EEEeeCCEEEEEecccCC----------cccEEEEEecCCc
Confidence 56778889999999999976 9998765422 011 223446666666655542 2245566666654
Q ss_pred HH-------HHHHHHHCCCeE
Q 031406 120 SK-------LKMILDKAGISY 133 (160)
Q Consensus 120 ~~-------~~~~l~~~G~~~ 133 (160)
++ +.+.+.+.|++.
T Consensus 142 ~e~~~~~~~~~~i~~~lGl~~ 162 (178)
T COG1437 142 NEIDGAKEEIEEIARQLGLKE 162 (178)
T ss_pred hhhHHHHHHHHHHHHHhCCCh
Confidence 44 667788888853
No 202
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=39.22 E-value=1e+02 Score=19.57 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHCCCeEeccC------CCceEEEEEcCCCCeEEEEeeC
Q 031406 117 RDVSKLKMILDKAGISYTLSK------SGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~~------~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
.+..+.+++|.+.| .+.... .|.-.+...|++|.+.+-....
T Consensus 24 k~f~~~~~~l~~~G-~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~M~ 71 (109)
T PF06923_consen 24 KNFNKAYKELRKKG-RVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEIMK 71 (109)
T ss_pred HHHHHHHHHHHhCC-cEEEeeecCcccCCeEEEEEECCCCcEEEEEEEe
Confidence 35677889999998 443321 3455677889999999876654
No 203
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=38.64 E-value=40 Score=14.77 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=8.2
Q ss_pred EEEEEcCCCCeE
Q 031406 142 AIFTRDPDANAL 153 (160)
Q Consensus 142 ~~~~~DPdG~~i 153 (160)
...+.|++|++|
T Consensus 8 ~~i~~D~~G~lW 19 (24)
T PF07494_consen 8 YSIYEDSDGNLW 19 (24)
T ss_dssp EEEEE-TTSCEE
T ss_pred EEEEEcCCcCEE
Confidence 456689999887
No 204
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.74 E-value=40 Score=18.72 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=16.5
Q ss_pred EEEEe---CCHHHHHHHHHHCCCeE
Q 031406 112 TCIAI---RDVSKLKMILDKAGISY 133 (160)
Q Consensus 112 i~f~v---~d~~~~~~~l~~~G~~~ 133 (160)
+.+.+ ++.+++.+.|+++|+++
T Consensus 45 ~~i~v~~~~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 45 LRISFKTQEDRERAKEILKEAGYEV 69 (69)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCcC
Confidence 44555 36789999999999864
No 205
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=37.59 E-value=1.3e+02 Score=21.41 Aligned_cols=47 Identities=9% Similarity=0.275 Sum_probs=33.5
Q ss_pred eEEEEEe--CCHHHHHHHHHHCCCeEeccCCCceEEEEEcCCCCeEEEEe
Q 031406 110 RHTCIAI--RDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 110 ~hi~f~v--~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~ie~~~ 157 (160)
.-+.+.| +|++++.+.|.+.|+....... ....|...+.|..||+..
T Consensus 95 ~DiDlLV~~~d~~~a~~~L~~~Gy~~~~~~~-~~~~~~~~~~~~~idlH~ 143 (249)
T PF14907_consen 95 GDIDLLVPPEDLERAVELLEELGYRIESPSE-HHWVYSHEPKGISIDLHW 143 (249)
T ss_pred CCeEEEEeCCcHHHHHHHHHHcCCEeccCCC-cceEEEecCCCEEEEEEe
Confidence 3466666 5999999999999998877532 333444447788888754
No 206
>PF10706 Aminoglyc_resit: Aminoglycoside-2''-adenylyltransferase; InterPro: IPR019646 Aminoglycoside-2''-adenylyltransferase is conserved in Bacteria. It confers resistance to kanamycin, gentamicin, and tobramycin []. The protein is also produced by plasmids in various bacterial species and confers resistance to essentially all clinically available aminoglycosides except streptomycin, and it eliminates the synergism between aminoglycosides and cell-wall active agents []. ; PDB: 4E8I_A 4E8J_B.
Probab=37.59 E-value=1.2e+02 Score=20.99 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=26.1
Q ss_pred EEEEEeCCHHHHHHHHHHCCCeEeccCCCceEEEEEcCCCCeEE
Q 031406 111 HTCIAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALE 154 (160)
Q Consensus 111 hi~f~v~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~ie 154 (160)
-+.+..++.+++.+.|+..|+++...-+ ..++.+++|-.+.
T Consensus 46 Di~~~~~~~~~l~~~L~~~G~~ite~~~---~~~l~~~~g~llD 86 (174)
T PF10706_consen 46 DIFVPREDQAELRALLKELGYRITETTD---YGFLADDDGRLLD 86 (174)
T ss_dssp EEEEEGGGHHHHHHHHHHTT-EEEEEET---EEEEEETTTEEEE
T ss_pred EEEEEcchhHHHHHHHHHCCCEEEEecc---ccEEEcCCCCEEE
Confidence 4556667899999999999998865321 2225555554443
No 207
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=37.54 E-value=55 Score=21.74 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=22.0
Q ss_pred eeEEEEe-CCHHHHHHHHHHhcCCEEeeecC
Q 031406 41 HHVGILC-ENLERSLEFYQNILGLEINEARP 70 (160)
Q Consensus 41 ~hv~l~v-~D~~~a~~Fy~~~lG~~~~~~~~ 70 (160)
..+.+.| .+-+.|..||++ +||+......
T Consensus 127 ~~~~L~V~~~N~~Ai~lY~~-~GF~~~~~~~ 156 (177)
T COG0456 127 DKIVLEVRESNEAAIGLYRK-LGFEVVKIRK 156 (177)
T ss_pred ceEEEEEecCChHHHHHHHH-cCCEEEeeeh
Confidence 5677777 356699999998 9999876543
No 208
>PF07566 DUF1543: Domain of Unknown Function (DUF1543); InterPro: IPR011440 This domain is found as 1-2 copies in a small family of proteins of unknown function.; PDB: 2QSD_F.
Probab=37.49 E-value=37 Score=18.38 Aligned_cols=47 Identities=9% Similarity=0.021 Sum_probs=25.6
Q ss_pred ceEEEEEeC-CHHHHHHHHHHCCCeEeccCCCceEEEEEcCCCCeEEE
Q 031406 109 DRHTCIAIR-DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 155 (160)
Q Consensus 109 ~~hi~f~v~-d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~ie~ 155 (160)
.+.+.|.|. ++++++.++++.-..-.....---..-+.+-+|..+++
T Consensus 5 ~Hd~~fvVa~s~~ea~~~~k~~W~~~~~~~H~D~~~~V~~~~g~~i~l 52 (52)
T PF07566_consen 5 QHDVRFVVAESIEEAKPKAKQRWFGDKKQLHKDDWMEVDDCDGYDIEL 52 (52)
T ss_dssp EECEEEEEESSCHHHHHHHHCC-SSESTTEEEEEEEEE-EECCECEEE
T ss_pred eeeeEEEEECCHHHHHHHHHHhhhhccCCcccccchhcCCcCceEeeC
Confidence 367888875 89999999988644322211111123344556665553
No 209
>PTZ00330 acetyltransferase; Provisional
Probab=37.39 E-value=52 Score=21.08 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=18.5
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEee
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINE 67 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~ 67 (160)
++..+.+.++ +.+..||++ +||+...
T Consensus 115 ~~~~l~l~~n--~~a~~~y~k-~GF~~~~ 140 (147)
T PTZ00330 115 GCYKVILDCT--EDMVAFYKK-LGFRACE 140 (147)
T ss_pred CCCEEEEecC--hHHHHHHHH-CCCEEec
Confidence 3445566654 578999987 9998754
No 210
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=37.37 E-value=99 Score=18.96 Aligned_cols=56 Identities=13% Similarity=0.155 Sum_probs=31.2
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHh--cCCEEeeecCCC--CCCcceEEEEe-CCcEEEEEec
Q 031406 38 VSVHHVGILCENLERSLEFYQNI--LGLEINEARPHD--KLPYRGAWLWV-GAEMIHLMEL 93 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~--lG~~~~~~~~~~--~~~~~~~~~~~-g~~~~~l~~~ 93 (160)
.++.|+++.|.|.+.-.+++.++ .|.++....... ....+..|+.. +|..++++..
T Consensus 57 ~~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 57 GGLNHLGVQVDSAEEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred CCeeEEEEEeCCHHHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 47899999999965555555543 477765422111 00112344444 4556777653
No 211
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=37.23 E-value=43 Score=21.74 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=20.6
Q ss_pred eEEEEEeCCHHHHHHHHHHCCCeEe
Q 031406 110 RHTCIAIRDVSKLKMILDKAGISYT 134 (160)
Q Consensus 110 ~hi~f~v~d~~~~~~~l~~~G~~~~ 134 (160)
.|+-..-+|++++.+.|+.+|.++.
T Consensus 103 DhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 103 DHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred ceEEEehhhHHHHHHHHHHcCCccc
Confidence 4666666799999999999998764
No 212
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=36.56 E-value=1.2e+02 Score=19.83 Aligned_cols=55 Identities=7% Similarity=-0.056 Sum_probs=32.9
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEec
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMEL 93 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~ 93 (160)
.--.+.+.|.|++++.+==+..=|.-+....+.+..+....+....+..+.|++.
T Consensus 71 ~~~~iy~~v~did~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~ 125 (127)
T COG3324 71 GGWVIYFAVDDIDATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSP 125 (127)
T ss_pred CCEEEEEecCChHHHHHHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEeec
Confidence 4456677799999999988776664333444434344333444444556666543
No 213
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=36.31 E-value=76 Score=24.17 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=46.4
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEeCCHHHH
Q 031406 43 VGILCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAIRDVSKL 122 (160)
Q Consensus 43 v~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v~d~~~~ 122 (160)
+.+.+-|+-++..|+.++++........-+ +--|...+.++..-+...+ -+-|.-+.++++
T Consensus 171 fGVTtLDvVRA~tFv~~~~~~~p~~~v~VP--------VIGGHaG~TIlPLlSQ~~p-----------~~~~~~~~~~~L 231 (345)
T KOG1494|consen 171 FGVTTLDVVRANTFVAEVLNLDPAEDVDVP--------VIGGHAGITIIPLLSQCKP-----------PFRFTDDEIEAL 231 (345)
T ss_pred eceehhhhhhHHHHHHHHhCCCchhcCCcc--------eecCcCCceEeeecccCCC-----------cccCCHHHHHHH
Confidence 455677999999999999999852211101 1113334455544332211 123444578889
Q ss_pred HHHHHHCCCeEeccC
Q 031406 123 KMILDKAGISYTLSK 137 (160)
Q Consensus 123 ~~~l~~~G~~~~~~~ 137 (160)
..|.+..|-++....
T Consensus 232 t~RiQ~gGtEVV~AK 246 (345)
T KOG1494|consen 232 THRIQNGGTEVVKAK 246 (345)
T ss_pred HHHHHhCCceEEEec
Confidence 999999999887643
No 214
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=34.88 E-value=1.3e+02 Score=19.45 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=22.6
Q ss_pred eeeeEEEEe-CCHHHHHHHHHHhcCCEEeeec
Q 031406 39 SVHHVGILC-ENLERSLEFYQNILGLEINEAR 69 (160)
Q Consensus 39 ~i~hv~l~v-~D~~~a~~Fy~~~lG~~~~~~~ 69 (160)
++..+.+.| .+-.++.+||++ +||+.....
T Consensus 109 ~~~~i~~~v~~~N~~s~~~y~k-~Gf~~~g~~ 139 (156)
T TIGR03585 109 GLHKLSLEVLEFNNKALKLYEK-FGFEREGVF 139 (156)
T ss_pred CeeEEEEEEeccCHHHHHHHHH-cCCeEeeee
Confidence 567777765 667788899987 999976643
No 215
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=33.45 E-value=86 Score=19.90 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHCCCeEeccC---CCceEEEEEcCCCCeE
Q 031406 117 RDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANAL 153 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~i 153 (160)
.|++.+.+.|.+.|+++.... ..+|.++|.--+|..+
T Consensus 64 rNv~~a~~~L~~~gi~I~a~dvGG~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAEDVGGNFGRKVRFDPATGEVW 103 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEEEE-SSS-EEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHCCCcEEEeeCCCCCCcEEEEEcCCCEEE
Confidence 489999999999999997653 3356666655566543
No 216
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=33.25 E-value=65 Score=17.11 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=12.2
Q ss_pred EEEEEcCCCCeEEEEe
Q 031406 142 AIFTRDPDANALEFTQ 157 (160)
Q Consensus 142 ~~~~~DPdG~~ie~~~ 157 (160)
...+.||||..+.+.-
T Consensus 30 sY~y~~pdG~~~~V~Y 45 (52)
T PF00379_consen 30 SYSYIDPDGQTRTVTY 45 (52)
T ss_pred EEEEECCCCCEEEEEE
Confidence 4667899999887753
No 217
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=33.18 E-value=97 Score=22.91 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCCeEeccCCCceEEEEEcCCCCeEE
Q 031406 119 VSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALE 154 (160)
Q Consensus 119 ~~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~ie 154 (160)
.++..+.++++|+++....-.--++++.||+++.+=
T Consensus 150 ~~~i~k~wk~rgi~F~~~k~slISV~~h~~d~~~lF 185 (250)
T PF14133_consen 150 AEKIQKYWKERGIKFNNDKASLISVFLHDPDDNSLF 185 (250)
T ss_pred HHHHHHHHHHcCceeCCCceEEEEEEEEcCCCCeEE
Confidence 345678889999999333334457888888877653
No 218
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=32.33 E-value=1.5e+02 Score=19.41 Aligned_cols=87 Identities=9% Similarity=0.122 Sum_probs=50.4
Q ss_pred eeeeEEEEeCCHHHHHHHHHHhcCCEEeeecC------CCCCCcceEEEEeC--CcEEEE-EecCCCCCCCCCCCCCCCc
Q 031406 39 SVHHVGILCENLERSLEFYQNILGLEINEARP------HDKLPYRGAWLWVG--AEMIHL-MELPNPDPLSGRPEHGGRD 109 (160)
Q Consensus 39 ~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~g--~~~~~l-~~~~~~~~~~~~~~~~~~~ 109 (160)
.+.-+.+.|.+.+.+.+-.++ -||.+....- +.+.+....--..+ +..+.. +...... .-
T Consensus 41 dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek----------~K 109 (142)
T COG4747 41 DFGIIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK----------QK 109 (142)
T ss_pred CcceEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC----------ce
Confidence 456677889999999999988 8998765311 01100000000001 111111 1111110 12
Q ss_pred eEEEEEeCCHHHHHHHHHHCCCeEecc
Q 031406 110 RHTCIAIRDVSKLKMILDKAGISYTLS 136 (160)
Q Consensus 110 ~hi~f~v~d~~~~~~~l~~~G~~~~~~ 136 (160)
.-+.+.|+|++++.+.|.++|+.+...
T Consensus 110 Alli~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 110 ALLIVRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred EEEEEEhhHHHHHHHHHHHcCCeecCh
Confidence 457899999999999999999988654
No 219
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.74 E-value=1.1e+02 Score=18.32 Aligned_cols=27 Identities=7% Similarity=0.107 Sum_probs=21.3
Q ss_pred eEEEEE--eCCHHHHHHHHHHCCCeEecc
Q 031406 110 RHTCIA--IRDVSKLKMILDKAGISYTLS 136 (160)
Q Consensus 110 ~hi~f~--v~d~~~~~~~l~~~G~~~~~~ 136 (160)
+|+.|- +.+++++.+.+.++|+++...
T Consensus 51 y~V~Fl~~~~s~eev~~ele~mga~in~d 79 (88)
T COG4009 51 YYVVFLEEVESEEEVERELEDMGAEINRD 79 (88)
T ss_pred EEEEEEeccCCHHHHHHHHHHhCchhccc
Confidence 566665 458999999999999988654
No 220
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=31.68 E-value=1.4e+02 Score=18.91 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=22.6
Q ss_pred HHHHHHHHCCCeEeccCCCceEEEEEcCCCCeEEEEeeC
Q 031406 121 KLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 121 ~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
++.+-|+++|+ ..+++|+.+|.+.++...++.
T Consensus 28 E~~a~lk~agi-------~nYSIfLde~~n~lFgy~E~~ 59 (105)
T COG3254 28 ELLALLKEAGI-------RNYSIFLDEEENLLFGYWEYE 59 (105)
T ss_pred HHHHHHHHcCC-------ceeEEEecCCcccEEEEEEEc
Confidence 34555666665 357788888888888888765
No 221
>PF10922 DUF2745: Protein of unknown function (DUF2745); InterPro: IPR020147 The T7-like bacteriophage gene 1.2 protein is an inhibitor of the Escherichia coli dGTP triphosphohydrolase (dGTPase) and is implicated in DNA replication.
Probab=31.18 E-value=1.2e+02 Score=18.28 Aligned_cols=37 Identities=8% Similarity=-0.054 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHCCCeEeccC-------CCceEEEEEcCCCCeEE
Q 031406 118 DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALE 154 (160)
Q Consensus 118 d~~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~ie 154 (160)
++.++.++|.+..+.+..+. .-+..+.+.|-+||.+-
T Consensus 11 afKaA~~Rl~~lD~~V~~e~~~~~~~~~~~~~Lrv~dr~G~~v~ 54 (85)
T PF10922_consen 11 AFKAATDRLYELDFAVISEEFYYSNPAKMCMVLRVEDRSGNSVF 54 (85)
T ss_pred HHHHHHHHHhhCcEEEEEEeeccccchhhEEEEEEEecCCCEee
Confidence 56678899999888776542 23567888999999883
No 222
>PHA02097 hypothetical protein
Probab=31.14 E-value=57 Score=17.63 Aligned_cols=14 Identities=21% Similarity=0.498 Sum_probs=10.7
Q ss_pred EEEcCCCCeEEEEe
Q 031406 144 FTRDPDANALEFTQ 157 (160)
Q Consensus 144 ~~~DPdG~~ie~~~ 157 (160)
.+.||+||-++++.
T Consensus 45 vv~~~n~ng~~~~h 58 (59)
T PHA02097 45 VVKDANYNGFELVH 58 (59)
T ss_pred EEecCCCCcEEEec
Confidence 45788888888863
No 223
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=31.10 E-value=59 Score=22.36 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=19.6
Q ss_pred eeeeEEEEe-CCHHHHHHHHHHhcCCEEee
Q 031406 39 SVHHVGILC-ENLERSLEFYQNILGLEINE 67 (160)
Q Consensus 39 ~i~hv~l~v-~D~~~a~~Fy~~~lG~~~~~ 67 (160)
++..|.+.| .+-..|.+||++ +||+...
T Consensus 156 g~~~I~l~v~~~N~~A~~~Y~k-lGF~~~~ 184 (191)
T TIGR02382 156 GLTRLRVATQMGNTAALRLYIR-SGANIES 184 (191)
T ss_pred CCCEEEEEeCCCCHHHHHHHHH-cCCcccc
Confidence 456666665 344688999986 9998643
No 224
>PF02952 Fucose_iso_C: L-fucose isomerase, C-terminal domain; InterPro: IPR015888 L-fucose isomerase (5.3.1.25 from EC) converts the aldose L-fucose into the corresponding ketose L-fuculose during the first step in fucose metabolism using Mn2+ as a cofactor. The enzyme is a hexamer, forming the largest structurally known ketol isomerase, and has no sequence or structural similarity with other ketol isomerases. The structure was determined by X-ray crystallography at 2.5 A resolution []. This entry represents the C-terminal domain of L-fucose isomerase.; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 1FUI_E 3A9R_A 3A9T_C 3A9S_C.
Probab=31.02 E-value=77 Score=20.75 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=21.0
Q ss_pred eeeEEEEeCCHHHHHHHHHHhcCCEEe
Q 031406 40 VHHVGILCENLERSLEFYQNILGLEIN 66 (160)
Q Consensus 40 i~hv~l~v~D~~~a~~Fy~~~lG~~~~ 66 (160)
-+|+.+...|..+..+-..+.||+++.
T Consensus 113 ~hH~~~~~G~~~~~l~~~~~~lgi~v~ 139 (142)
T PF02952_consen 113 AHHVALVYGDYAEELKELAKYLGIEVV 139 (142)
T ss_dssp SSEEEEEES--HHHHHHHHHHHT--EE
T ss_pred CCeEEEEcCcHHHHHHHHHHHcCCEEE
Confidence 589999999999999998999999875
No 225
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=30.94 E-value=1.1e+02 Score=20.94 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHCCCeEeccC---CCceEEEEEcCCCCe
Q 031406 117 RDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 152 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~ 152 (160)
.|++.+.+.|++.|+++.... ..+|.++|.--+|..
T Consensus 112 rNv~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v 150 (162)
T PRK13490 112 RNGKAVKKKLKELSIPILAEDIGGNKGRTMIFDTSDGKV 150 (162)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEE
Confidence 499999999999999997653 235666655545543
No 226
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=30.88 E-value=58 Score=20.79 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=19.0
Q ss_pred eeeeEEEEeC-CHHHHHHHHHHhcCCEEe
Q 031406 39 SVHHVGILCE-NLERSLEFYQNILGLEIN 66 (160)
Q Consensus 39 ~i~hv~l~v~-D~~~a~~Fy~~~lG~~~~ 66 (160)
+...+.+.+. +-..|.+||++ +||...
T Consensus 109 ~~~~i~l~~~~~n~~a~~fY~~-~Gf~~~ 136 (144)
T PRK10146 109 GAEMTELSTNVKRHDAHRFYLR-EGYEQS 136 (144)
T ss_pred CCcEEEEecCCCchHHHHHHHH-cCCchh
Confidence 4555666652 44589999987 999754
No 227
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=30.68 E-value=49 Score=22.67 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=14.8
Q ss_pred ceEEEEEcCCCCeEEEEeeC
Q 031406 140 RPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 140 ~~~~~~~DPdG~~ie~~~~~ 159 (160)
.-.+|+.||+|.+...+..|
T Consensus 155 s~~~~Lidp~G~i~~~y~~~ 174 (174)
T PF02630_consen 155 SAFIYLIDPDGRIRAIYNLD 174 (174)
T ss_dssp SSEEEEE-TTSEEEEEECS-
T ss_pred ccEEEEEcCCCcEEEEEccC
Confidence 34699999999999887653
No 228
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=30.66 E-value=1.1e+02 Score=21.00 Aligned_cols=36 Identities=11% Similarity=0.216 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHCCCeEeccCC---CceEEEEEcCCCCe
Q 031406 117 RDVSKLKMILDKAGISYTLSKS---GRPAIFTRDPDANA 152 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~~~---g~~~~~~~DPdG~~ 152 (160)
.|++.+.+.|.+.|+++....- .+|.++|.--+|..
T Consensus 115 rNi~~a~~~L~~~gi~i~a~DvGG~~gR~i~f~~~tG~v 153 (167)
T PRK13498 115 KNIHAALALAEQNGLHLKAQDLGSTGHRSIIFDLWNGNV 153 (167)
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 4899999999999999977542 34666665555644
No 229
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.20 E-value=1.9e+02 Score=20.10 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=45.2
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeec-CCCCCCcceEEE------EeCCcEEEEEecCCCCCCCCCCCCCCCce
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEAR-PHDKLPYRGAWL------WVGAEMIHLMELPNPDPLSGRPEHGGRDR 110 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~-~~~~~~~~~~~~------~~g~~~~~l~~~~~~~~~~~~~~~~~~~~ 110 (160)
..++|+.|+|++...+..|-.-++.+-..-.. -..+. ..+-+ .+.+.++.+++.+-+.. ...|. .+.-
T Consensus 38 ~~~DHIaLRvh~~qtAk~wr~~~lqcG~~lS~n~iNGR--pI~li~l~~Pl~v~~w~id~iELP~P~~-K~YP~--egWE 112 (185)
T COG3102 38 YTADHIALRVHQEQTAKRWRRGLLQCGELLSENLINGR--PICLIKLHQPLQVAHWQIDIIELPYPKN-KRYPH--EGWE 112 (185)
T ss_pred cccceeEEEeCcHHHHHHHHHHHHHHHHHhhhhhcCCc--eEEEEEcCCcceecceEEEEEEccCCcC-CCCCC--cCce
Confidence 35799999999999888876554433221111 01111 11222 23455677776654332 12222 4468
Q ss_pred EEEEEeC-CHHHHHHH
Q 031406 111 HTCIAIR-DVSKLKMI 125 (160)
Q Consensus 111 hi~f~v~-d~~~~~~~ 125 (160)
||-+..+ +-+++..+
T Consensus 113 HIEiVlP~~peel~~~ 128 (185)
T COG3102 113 HIEIVLPGDPEELNAR 128 (185)
T ss_pred eEEEEcCCChHHHHHH
Confidence 9999988 44444433
No 230
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=30.07 E-value=93 Score=16.46 Aligned_cols=18 Identities=6% Similarity=0.099 Sum_probs=13.1
Q ss_pred CCceEEEEEcCCCCeEEE
Q 031406 138 SGRPAIFTRDPDANALEF 155 (160)
Q Consensus 138 ~g~~~~~~~DPdG~~ie~ 155 (160)
.|.+.|.+++.+|.+|--
T Consensus 3 ~g~~~f~L~a~ng~vias 20 (49)
T PF07411_consen 3 DGQFRFRLKAGNGEVIAS 20 (49)
T ss_dssp TSEEEEEEE-TTS-EEEE
T ss_pred CCCEEEEEEcCCCCEEEe
Confidence 467889999999999873
No 231
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=29.96 E-value=1.1e+02 Score=17.33 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=18.3
Q ss_pred CCCceEEEEEcCCCCeEEEEee
Q 031406 137 KSGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 137 ~~g~~~~~~~DPdG~~ie~~~~ 158 (160)
..|.+.+-+.|.+|+.|...++
T Consensus 42 ~~G~WrV~V~~~~G~~l~~~~F 63 (66)
T PF11141_consen 42 QPGDWRVEVVDEDGQVLGSLRF 63 (66)
T ss_pred CCcCEEEEEEcCCCCEEEEEEE
Confidence 4678999999999999987654
No 232
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=29.67 E-value=1.2e+02 Score=20.66 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHCCCeEeccC---CCceEEEEEcCCCCe
Q 031406 117 RDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 152 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~ 152 (160)
.|++.+.+.|++.|+++.... ..+|.++|.--+|..
T Consensus 105 rNi~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v 143 (159)
T PRK13495 105 RNVEAVKKHLKDFGIKLVAEDTGGNRARSIEYNIETGKL 143 (159)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 489999999999999997653 235666665555544
No 233
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.08 E-value=1e+02 Score=16.65 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=18.0
Q ss_pred eEEEEEeCC---HHHHHHHHHHCCCeEe
Q 031406 110 RHTCIAIRD---VSKLKMILDKAGISYT 134 (160)
Q Consensus 110 ~hi~f~v~d---~~~~~~~l~~~G~~~~ 134 (160)
.++.+.+.+ ++++.+.+++.|+++.
T Consensus 45 ~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 45 VELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 445566554 4588999999998764
No 234
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=28.73 E-value=91 Score=21.42 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=21.1
Q ss_pred eeeeeEEEEe-CCHHHHHHHHHHhcCCEEee
Q 031406 38 VSVHHVGILC-ENLERSLEFYQNILGLEINE 67 (160)
Q Consensus 38 ~~i~hv~l~v-~D~~~a~~Fy~~~lG~~~~~ 67 (160)
.++..+.+.| .+-..+..||++ +||+...
T Consensus 158 ~g~~~i~l~v~~~N~~a~~~yek-~Gf~~~~ 187 (194)
T PRK10975 158 RGLTRLRVATQMGNLAALRLYIR-SGANIES 187 (194)
T ss_pred cCCCEEEEEeCCCcHHHHHHHHH-CCCeEeE
Confidence 3566777776 344688999976 9998755
No 235
>PF08379 Bact_transglu_N: Bacterial transglutaminase-like N-terminal region; InterPro: IPR013589 This region is found towards the N terminus of various archaeal and bacterial hypothetical proteins. Some of these are annotated as being transglutaminase-like proteins, and in fact contain a transglutaminase-like superfamily domain (IPR002931 from INTERPRO).
Probab=28.30 E-value=1.3e+02 Score=17.53 Aligned_cols=23 Identities=9% Similarity=-0.219 Sum_probs=16.3
Q ss_pred CCCceEEEEEcCCCCeEEEEeeC
Q 031406 137 KSGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 137 ~~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
+.........|..||.+..+..+
T Consensus 44 P~~~~~~~~~D~fGN~v~~~~~~ 66 (82)
T PF08379_consen 44 PEPARVREYTDFFGNRVHRFSFP 66 (82)
T ss_pred CCCCEEEEEECCCCCEEEEEEEC
Confidence 33345677889999998877654
No 236
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=28.27 E-value=60 Score=14.99 Aligned_cols=14 Identities=36% Similarity=0.809 Sum_probs=11.5
Q ss_pred eCCHHHHHHHHHHh
Q 031406 47 CENLERSLEFYQNI 60 (160)
Q Consensus 47 v~D~~~a~~Fy~~~ 60 (160)
-.|.+++..||++.
T Consensus 18 ~~d~~~A~~~~~~A 31 (36)
T smart00671 18 KKDLEKALEYYKKA 31 (36)
T ss_pred CcCHHHHHHHHHHH
Confidence 36999999999874
No 237
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=27.89 E-value=1.4e+02 Score=20.54 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHCCCeEeccC---CCceEEEEEcCCCCe
Q 031406 117 RDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 152 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~ 152 (160)
.|++.+.+.|.+.|+++.... ..+|.++|.--+|..
T Consensus 114 rNv~~a~~~L~~~gI~i~a~DvGG~~gR~i~f~~~tG~v 152 (163)
T PRK13494 114 ENSEFAVNTLNKYGIPILAKDFDQSKSRKIFVFPENFKV 152 (163)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 489999999999999997653 235666665555544
No 238
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=27.58 E-value=1.3e+02 Score=17.29 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHCCCeEeccCCCceEEEEEcCCCCeEEE
Q 031406 118 DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 155 (160)
Q Consensus 118 d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~ie~ 155 (160)
+..+..+.|.+.|+......+. ...++.|||.++-+
T Consensus 8 ~~ke~ik~Le~~Gf~~vrqkGS--H~q~kHp~~~~vtV 43 (66)
T COG1724 8 KAKEVIKALEKDGFQLVRQKGS--HRQYKHPDGGRVTV 43 (66)
T ss_pred CHHHHHHHHHhCCcEEEEeecc--eeEEEcCCCCEEEe
Confidence 4567788999999988876632 35567788776654
No 239
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=27.20 E-value=72 Score=24.27 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=21.4
Q ss_pred eeeeeEEEEe------CCHHHHHHHHHHhcCCEEe
Q 031406 38 VSVHHVGILC------ENLERSLEFYQNILGLEIN 66 (160)
Q Consensus 38 ~~i~hv~l~v------~D~~~a~~Fy~~~lG~~~~ 66 (160)
.+++|+++.| .|+++..++.++ .|++..
T Consensus 183 ~~~NH~T~~v~~l~~~~dI~~v~~~l~~-~G~~~n 216 (302)
T PF07063_consen 183 YHINHFTPRVNRLKKFLDIDAVNAFLKE-RGIPMN 216 (302)
T ss_dssp CS-SEEEEETTT-TT-S-HHHHHHHHHH-TT--B-
T ss_pred cccceeeceeecccccccHHHHHHHHHH-cCCCcc
Confidence 4689999999 999999999988 999987
No 240
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=26.84 E-value=52 Score=18.72 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=14.2
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEE
Q 031406 43 VGILCENLERSLEFYQNILGLEI 65 (160)
Q Consensus 43 v~l~v~D~~~a~~Fy~~~lG~~~ 65 (160)
+.+.+ -+.+..||++ +||++
T Consensus 60 i~l~~--~~~~~~fY~~-~GF~~ 79 (79)
T PF13508_consen 60 IFLFT--NPAAIKFYEK-LGFEE 79 (79)
T ss_dssp EEEEE--EHHHHHHHHH-TTEEE
T ss_pred EEEEE--cHHHHHHHHH-CcCCC
Confidence 34444 2689999987 99874
No 241
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=26.50 E-value=89 Score=17.18 Aligned_cols=17 Identities=6% Similarity=0.155 Sum_probs=11.3
Q ss_pred eEEEEEcCCCCeEEEEe
Q 031406 141 PAIFTRDPDANALEFTQ 157 (160)
Q Consensus 141 ~~~~~~DPdG~~ie~~~ 157 (160)
..|.|.|.+|+.+.+.-
T Consensus 10 s~F~FYDen~~lVrv~v 26 (54)
T PF12142_consen 10 SSFLFYDENGQLVRVKV 26 (54)
T ss_dssp -EEEEE-TTS-EEEEEG
T ss_pred CeeEEECCCCCEEEEEh
Confidence 35788899999988753
No 242
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=26.43 E-value=1.3e+02 Score=18.53 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=30.8
Q ss_pred ceEEEEEeCCHHHHHHHHHHCCCe--EeccC----------C------CceEEEEEcCCCCeE
Q 031406 109 DRHTCIAIRDVSKLKMILDKAGIS--YTLSK----------S------GRPAIFTRDPDANAL 153 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~~G~~--~~~~~----------~------g~~~~~~~DPdG~~i 153 (160)
..-+++..++.++..+.+.+.+.. +..++ . .....|+.|++|.+.
T Consensus 60 ~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 60 VQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp EEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEE
T ss_pred EEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEE
Confidence 456788888888777777766553 32221 1 346799999999875
No 243
>PRK09732 hypothetical protein; Provisional
Probab=26.39 E-value=2e+02 Score=19.02 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=19.8
Q ss_pred HHHHHHHHHCCCeEeccCCCceEEEEEcCCCCeEEEEeeC
Q 031406 120 SKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 120 ~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
+++.++..++|+. -.+-+.|..||.+-+.-.|
T Consensus 17 ~aA~~~A~~~g~~--------v~iaVvD~~G~l~a~~RmD 48 (134)
T PRK09732 17 AAGQEEAQKNNWS--------VSIAVADDGGHLLALSRMD 48 (134)
T ss_pred HHHHHHHHHhCCC--------EEEEEEcCCCCEEEEEEcC
Confidence 3445566666653 3466677777777766554
No 244
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=26.31 E-value=2.1e+02 Score=19.27 Aligned_cols=30 Identities=17% Similarity=0.473 Sum_probs=22.3
Q ss_pred eeeeEEEEe-CCHHHHHHHHHHhcCCEEeeec
Q 031406 39 SVHHVGILC-ENLERSLEFYQNILGLEINEAR 69 (160)
Q Consensus 39 ~i~hv~l~v-~D~~~a~~Fy~~~lG~~~~~~~ 69 (160)
++..|.+.| .+-.+|.+||++ +||+.....
T Consensus 116 ~~~rv~~~v~~~N~~s~~~yek-~GF~~~~~~ 146 (186)
T PRK15130 116 NLYKLYLIVDKENEKAIHIYRK-LGFEVEGEL 146 (186)
T ss_pred CceEEEEEEccCCHHHHHHHHH-CCCEEEEEE
Confidence 456677776 355689999987 999987643
No 245
>COG3042 Hlx Putative hemolysin [General function prediction only]
Probab=26.18 E-value=1.6e+02 Score=17.90 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=25.9
Q ss_pred HHHHHHHHHCCCeEec--cCCCceEEEEEcCCCCeEEE
Q 031406 120 SKLKMILDKAGISYTL--SKSGRPAIFTRDPDANALEF 155 (160)
Q Consensus 120 ~~~~~~l~~~G~~~~~--~~~g~~~~~~~DPdG~~ie~ 155 (160)
..+.....++|..... ..+|+...+..-|||-++|=
T Consensus 37 NpAs~yC~~~GG~l~~~~~~~G~~~~~C~LPdGr~~eE 74 (85)
T COG3042 37 NPASVYCAQQGGTLEAVKREDGGVVGMCVLPDGRICEE 74 (85)
T ss_pred CHHHHHHHHhCCeeeeEEccCCCEEEEEECCCCcccHH
Confidence 3445566777777654 45677888999999988763
No 246
>PRK03094 hypothetical protein; Provisional
Probab=26.02 E-value=1.6e+02 Score=17.69 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHCCCeEeccC-----CCceEEEEEcCCCCeEEE
Q 031406 118 DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALEF 155 (160)
Q Consensus 118 d~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~ie~ 155 (160)
++..+.+.|+++|+++.... .+...+.+..-|.|...+
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi 51 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGI 51 (80)
T ss_pred CcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecc
Confidence 78889999999999996532 334566666666665543
No 247
>PHA02540 61 DNA primase; Provisional
Probab=25.81 E-value=1.5e+02 Score=23.06 Aligned_cols=42 Identities=17% Similarity=0.077 Sum_probs=33.0
Q ss_pred EEeCCHHHHHHHHHHCCCeEeccCCCceEEEEEcCCCCeEEEE
Q 031406 114 IAIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEFT 156 (160)
Q Consensus 114 f~v~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~ie~~ 156 (160)
+..++.+.+.+.+...|+....+. +.-.|=++|.+|++|.|-
T Consensus 148 ~~~~~~~~l~~~l~~~~~~~~~d~-~RImFPI~d~~G~vigFg 189 (337)
T PHA02540 148 YFTREWQKLVNSIKPDTYKKEKPE-PRLVIPIFNKDGKIESFQ 189 (337)
T ss_pred CCCccHHHHHHHHhhccCchhccC-CeeEEEEECCCCCEEEEE
Confidence 456788889999988888765443 566788999999999875
No 248
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=25.48 E-value=97 Score=15.15 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=16.0
Q ss_pred CCCceEEEEEcCCCCeEEEEeeC
Q 031406 137 KSGRPAIFTRDPDANALEFTQVD 159 (160)
Q Consensus 137 ~~g~~~~~~~DPdG~~ie~~~~~ 159 (160)
+.|...-|-.|+.|++..+..+.
T Consensus 13 ~~G~~~~y~YD~~g~l~~~t~~~ 35 (38)
T PF05593_consen 13 PDGRTTRYTYDAAGRLTSVTDPD 35 (38)
T ss_pred CCCCEEEEEECCCCCEEEEECCC
Confidence 45556667788888888776543
No 249
>COG1490 Dtd D-Tyr-tRNAtyr deacylase [Translation, ribosomal structure and biogenesis]
Probab=25.10 E-value=1.3e+02 Score=20.07 Aligned_cols=50 Identities=12% Similarity=0.077 Sum_probs=37.8
Q ss_pred ceEEEEEeCCHHHHHHHHHHC--CCeEeccCCCceEEEEEcCCCCeEEEEee
Q 031406 109 DRHTCIAIRDVSKLKMILDKA--GISYTLSKSGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~~--G~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 158 (160)
+..+++.-+|-++..++|..+ ++++-.+..+.+...+.|-.|-++-+.|+
T Consensus 28 lvLvGV~~~Dt~~~a~~l~~Ki~~lRiF~D~~gKmN~sv~di~G~iL~VSQF 79 (145)
T COG1490 28 LVLVGVTHDDTEEDADYLAEKILNLRIFEDEEGKMNLSVQDVGGEILVVSQF 79 (145)
T ss_pred EEEEeecCCCCHHHHHHHHHHHhceEeecCcccccccCHHHcCCcEEEEEEE
Confidence 455677777777777777664 67777777777888889999988888774
No 250
>PHA02754 hypothetical protein; Provisional
Probab=25.06 E-value=1.4e+02 Score=16.71 Aligned_cols=40 Identities=30% Similarity=0.363 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCCeEeccC---CCceEEEEEcCCCCeEEEEee
Q 031406 119 VSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 119 ~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~ie~~~~ 158 (160)
+.++.+.|.++|+-+.... ..+.-..+.-.||..+|+.+.
T Consensus 20 MRelkD~LSe~GiYi~RIkai~~SGdkIVVi~aD~I~i~ls~T 62 (67)
T PHA02754 20 MRELKDILSEAGIYIDRIKAITTSGDKIVVITADAIKIELSET 62 (67)
T ss_pred HHHHHHHHhhCceEEEEEEEEEecCCEEEEEEcceEEEEEEee
Confidence 3456678888998776543 233446666788999988764
No 251
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=25.00 E-value=1.7e+02 Score=20.57 Aligned_cols=37 Identities=14% Similarity=0.020 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHCCCeEeccC---CCceEEEEEcCCCCeE
Q 031406 117 RDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANAL 153 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~i 153 (160)
.|++.+.+.|.+.|+++.... ..+|.++|..-+|..+
T Consensus 112 rNi~~a~~~L~~~gI~i~a~DvGG~~gR~v~f~~~tG~v~ 151 (184)
T PRK13497 112 QNAAFAMQFLRDEGIPVVGSSTGGEHGRKLEYWPVSGRAR 151 (184)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCeEE
Confidence 489999999999999997653 2356676665566553
No 252
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=24.83 E-value=1e+02 Score=15.14 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=12.3
Q ss_pred CCCceEEEEEcCCCCeEEEEee
Q 031406 137 KSGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 137 ~~g~~~~~~~DPdG~~ie~~~~ 158 (160)
+.|...-|-.|..|+++....+
T Consensus 13 p~G~~~~~~YD~~Grl~~~tdp 34 (42)
T TIGR01643 13 ADGTTTRYTYDAAGRLVEITDA 34 (42)
T ss_pred CCCCEEEEEECCCCCEEEEECC
Confidence 3444555556666666665543
No 253
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=24.82 E-value=1.7e+02 Score=19.94 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHCCCeEeccC---CCceEEEEEcCCCCe
Q 031406 117 RDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 152 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~ 152 (160)
.|++.+.+.|++.|+++.... ..+|.++|.--+|..
T Consensus 107 rNi~~a~~~L~~~gi~i~a~dvGG~~gR~i~f~~~tG~v 145 (157)
T PRK13488 107 RNIESAKETLKKLGIRIVAEDVGGDYGRTVKFDLKTGKV 145 (157)
T ss_pred HHHHHHHHHHHHCCCcEEEEEcCCCCCcEEEEECCCCEE
Confidence 599999999999999997654 235666655445543
No 254
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=24.41 E-value=1.4e+02 Score=18.09 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=20.5
Q ss_pred ceEEEEEeC---CHHHHHHHHHHCCCeEecc
Q 031406 109 DRHTCIAIR---DVSKLKMILDKAGISYTLS 136 (160)
Q Consensus 109 ~~hi~f~v~---d~~~~~~~l~~~G~~~~~~ 136 (160)
...++|.++ +++++.++|.+.|+.+...
T Consensus 51 ~vlvgi~v~~~~~~~~l~~~L~~~gy~~~dl 81 (91)
T PF00585_consen 51 RVLVGIEVPDAEDLEELIERLKALGYPYEDL 81 (91)
T ss_dssp EEEEEEE-SSTHHHHHHHHHHTSSS-EEECT
T ss_pred eEEEEEEeCCHHHHHHHHHHHHHcCCCeEEC
Confidence 467889987 4577899999999988654
No 255
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.13 E-value=49 Score=25.67 Aligned_cols=24 Identities=4% Similarity=0.217 Sum_probs=19.7
Q ss_pred EEEEeCCHHHHHHHHHHCCCeEec
Q 031406 112 TCIAIRDVSKLKMILDKAGISYTL 135 (160)
Q Consensus 112 i~f~v~d~~~~~~~l~~~G~~~~~ 135 (160)
+|.++++++++++.++++|+.+..
T Consensus 105 la~n~~e~~~iveaA~~rgv~~me 128 (351)
T KOG2741|consen 105 LAMNVAEAEEIVEAAEARGVFFME 128 (351)
T ss_pred ccCCHHHHHHHHHHHHHcCcEEEe
Confidence 466777899999999999987754
No 256
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=24.12 E-value=1.3e+02 Score=19.26 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=20.6
Q ss_pred eeeeEEEEe-CCHHHHHHHHHHhcCCEEee
Q 031406 39 SVHHVGILC-ENLERSLEFYQNILGLEINE 67 (160)
Q Consensus 39 ~i~hv~l~v-~D~~~a~~Fy~~~lG~~~~~ 67 (160)
++.++.+.| .+-.++.+||++ +||+...
T Consensus 96 ~~~~~~~~~~~~N~~a~~~y~k-~Gf~~~~ 124 (146)
T PRK09491 96 GVATLWLEVRASNAAAIALYES-LGFNEVT 124 (146)
T ss_pred CCcEEEEEEccCCHHHHHHHHH-cCCEEee
Confidence 456666665 445789999987 9998765
No 257
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=23.80 E-value=1.2e+02 Score=20.60 Aligned_cols=87 Identities=16% Similarity=0.116 Sum_probs=51.1
Q ss_pred eEEEEeCCHHHHHHHHHHhcC----CEEeeecCCCCCCcceEEEEeCCcEEEEEecCCCCCCCCCCCCCCCceEEEEEe-
Q 031406 42 HVGILCENLERSLEFYQNILG----LEINEARPHDKLPYRGAWLWVGAEMIHLMELPNPDPLSGRPEHGGRDRHTCIAI- 116 (160)
Q Consensus 42 hv~l~v~D~~~a~~Fy~~~lG----~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~hi~f~v- 116 (160)
.|...+.|.++-.+-....++ |+.....- .......+-+...+-.+++..-+.+...+ .+..|+-++-
T Consensus 36 DIic~~~d~~~F~~~l~~~f~~~~~f~~~~~~i-~~~~~~~~~F~~~~~~~EiF~Q~~Pv~~Q------nayrHm~iE~r 108 (152)
T PF14091_consen 36 DIICEVPDPEAFEQLLQSLFGQFEGFTIKEKTI-RGEPSIVANFRYEGFPFEIFGQPIPVEEQ------NAYRHMLIEHR 108 (152)
T ss_pred cEEEEeCCHHHHHHHHHHHhccCCCceeeecee-CCceeEEEEEEECCceEEEeecCCChhhH------HHHHHHHHHHH
Confidence 355667898887765555554 44433211 11222234456678788888766544322 2345554432
Q ss_pred ------CCHHHHHHHHHHCCCeEec
Q 031406 117 ------RDVSKLKMILDKAGISYTL 135 (160)
Q Consensus 117 ------~d~~~~~~~l~~~G~~~~~ 135 (160)
+++.+..-+|++.|++.+.
T Consensus 109 LL~~~g~~~r~~Ii~LK~~GlKTEP 133 (152)
T PF14091_consen 109 LLELHGPSFREEIIELKESGLKTEP 133 (152)
T ss_pred HHHhcCHHHHHHHHHHHHcCCcchH
Confidence 4677788899999998764
No 258
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=23.77 E-value=1.7e+02 Score=21.09 Aligned_cols=36 Identities=6% Similarity=0.077 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHCCCeEeccC---CCceEEEEEcCCCCe
Q 031406 117 RDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 152 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~ 152 (160)
.|++.+.+.|.+.|+++.... ..+|.++|.--+|..
T Consensus 139 rNi~~a~~~L~~~gI~Iva~DvGG~~gRki~f~~~tG~v 177 (213)
T PRK13493 139 KNVEFVLEYAKREKLNVVAQDLGGAQPRKLLFDPQTGQA 177 (213)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 489999999999999997653 235666665555543
No 259
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=23.69 E-value=1.2e+02 Score=20.93 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=22.7
Q ss_pred eeeeEEEEeC-CHHHHHHHHHHhcCCEEeeec
Q 031406 39 SVHHVGILCE-NLERSLEFYQNILGLEINEAR 69 (160)
Q Consensus 39 ~i~hv~l~v~-D~~~a~~Fy~~~lG~~~~~~~ 69 (160)
.-.+|-|.|+ .-.+|...|++.|||++.+..
T Consensus 105 ~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve 136 (193)
T KOG3235|consen 105 EAKYVSLHVRKSNRAALHLYKNTLGFVVCEVE 136 (193)
T ss_pred cceEEEEeeecccHHHHHhhhhccceEEeecc
Confidence 3467777773 445677999999999987643
No 260
>PF11746 DUF3303: Protein of unknown function (DUF3303); InterPro: IPR021734 Several members are annotated as being LysM domain-like proteins, but these did not match any LysM domains reported in the literature.
Probab=23.63 E-value=1.8e+02 Score=17.65 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=24.4
Q ss_pred HHHHHHHHCCCeEeccCCCceEEEEEcC-CCCeEEEEeeC
Q 031406 121 KLKMILDKAGISYTLSKSGRPAIFTRDP-DANALEFTQVD 159 (160)
Q Consensus 121 ~~~~~l~~~G~~~~~~~~g~~~~~~~DP-dG~~ie~~~~~ 159 (160)
+++++..+.|.+-..+.+-.......+| .|.-+-|++.+
T Consensus 19 ~~~~~~~~~G~~~~~peG~~~l~rw~~~~~g~g~~i~ead 58 (91)
T PF11746_consen 19 KAFERFMESGAPGDPPEGFKVLGRWHDPGGGRGFAIVEAD 58 (91)
T ss_pred HHHHHHHhcCCCCCCCCCEEEEEEEEecCCCcEEEEEEeC
Confidence 6778888888444333322344566788 46777777755
No 261
>PHA00450 host dGTPase inhibitor
Probab=23.51 E-value=1.8e+02 Score=17.47 Aligned_cols=40 Identities=5% Similarity=-0.008 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHCCCeEeccC-------CCceEEEEEcCCCCeEEEEe
Q 031406 118 DVSKLKMILDKAGISYTLSK-------SGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 118 d~~~~~~~l~~~G~~~~~~~-------~g~~~~~~~DPdG~~ie~~~ 157 (160)
+..++.++|.+..+.+..+. ...+...+.|-+|++|.-.+
T Consensus 11 afKaA~~RL~q~D~aVi~e~~~~~~~~k~c~~LRvedR~G~~i~s~t 57 (85)
T PHA00450 11 AFKAATARLFEHDVAVIVEEFYYENPAKMCMSLRVEDRSGHLIASRT 57 (85)
T ss_pred HHHHHHHHHHhcceeEEEeehhccchhhheeEEEEEecCCCEeeeee
Confidence 45678899999888776542 23577899999999986543
No 262
>PRK11191 RNase E inhibitor protein; Provisional
Probab=23.28 E-value=1.8e+02 Score=19.37 Aligned_cols=25 Identities=20% Similarity=0.045 Sum_probs=18.8
Q ss_pred eEEEEEeC-CHHHHHHHHHHCCCeEe
Q 031406 110 RHTCIAIR-DVSKLKMILDKAGISYT 134 (160)
Q Consensus 110 ~hi~f~v~-d~~~~~~~l~~~G~~~~ 134 (160)
+|++|.-. +++++...+.++|+.+.
T Consensus 36 H~~~f~d~~~lek~a~~a~klGyeV~ 61 (138)
T PRK11191 36 HHFSADDFDKLEKAAVEAFKLGYEVT 61 (138)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCeee
Confidence 56666654 67778888889999984
No 263
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=23.21 E-value=72 Score=22.61 Aligned_cols=33 Identities=30% Similarity=0.560 Sum_probs=25.0
Q ss_pred eeeEEEEe-CCHHHHHHHHHHhcCCEEeeecCCCC
Q 031406 40 VHHVGILC-ENLERSLEFYQNILGLEINEARPHDK 73 (160)
Q Consensus 40 i~hv~l~v-~D~~~a~~Fy~~~lG~~~~~~~~~~~ 73 (160)
+..|.+.| ++-.++..||.+ +||......+.+.
T Consensus 154 ~~kVmLTVf~~N~~al~Fy~~-~gf~~~~~sp~~~ 187 (202)
T KOG2488|consen 154 MRKVMLTVFSENIRALGFYHR-LGFVVDEESPCDT 187 (202)
T ss_pred hhhheeeeecccchhHHHHHH-cCcccCCCCCccc
Confidence 44678887 788899999987 9998766555433
No 264
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=23.17 E-value=2.4e+02 Score=18.85 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=26.7
Q ss_pred ceEEEEEeC-CHHHHHHHHHHCCCeE-----ecc----------CCCceEEEEEcCCCCeEE
Q 031406 109 DRHTCIAIR-DVSKLKMILDKAGISY-----TLS----------KSGRPAIFTRDPDANALE 154 (160)
Q Consensus 109 ~~hi~f~v~-d~~~~~~~l~~~G~~~-----~~~----------~~g~~~~~~~DPdG~~ie 154 (160)
+.-+++..+ +.++..+.+++.++.. ... ..+-...++.||+|.++.
T Consensus 66 ~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 66 LALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred EEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHHHHcCCCCCCEEEEECCCCcEEe
Confidence 344555555 4444556666666432 100 124567899999999874
No 265
>PF15121 TMEM71: TMEM71 protein family
Probab=22.91 E-value=89 Score=20.71 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=15.2
Q ss_pred HHHHCCCeEeccCCCceEEEEEcCCCCe
Q 031406 125 ILDKAGISYTLSKSGRPAIFTRDPDANA 152 (160)
Q Consensus 125 ~l~~~G~~~~~~~~g~~~~~~~DPdG~~ 152 (160)
+|..+|+-+-.+. -++.|.|||+
T Consensus 63 RLLtNGYYi~TED-----SFl~D~dGNI 85 (149)
T PF15121_consen 63 RLLTNGYYIWTED-----SFLCDEDGNI 85 (149)
T ss_pred hhhcCccEEEecc-----ceeecCCCCE
Confidence 5667777654433 4677888885
No 266
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=22.89 E-value=85 Score=19.04 Aligned_cols=19 Identities=37% Similarity=0.669 Sum_probs=12.5
Q ss_pred EEEeCCHHHHHHHHHHhcCC
Q 031406 44 GILCENLERSLEFYQNILGL 63 (160)
Q Consensus 44 ~l~v~D~~~a~~Fy~~~lG~ 63 (160)
.+.+..-..+..||+. +||
T Consensus 99 ~l~~~~~~~a~~~y~~-~GF 117 (117)
T PF13673_consen 99 RLTVEANERARRFYRK-LGF 117 (117)
T ss_dssp EEEEEC-HHHHHHHHH-TT-
T ss_pred EEEEEeCHHHHHHHHh-CCC
Confidence 3444477888999987 876
No 267
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=22.88 E-value=1.9e+02 Score=20.63 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHCCCeEeccC---CCceEEEEEcCCCCeE
Q 031406 117 RDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANAL 153 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~i 153 (160)
.|++.+.+.|++.|+.+.... ..+|.++|.--+|..+
T Consensus 115 rNie~a~~~L~~~GI~ivaeDvGG~~gRkI~f~~~tG~v~ 154 (199)
T PRK13491 115 ANAAFARRYLRDEGIRCTAHSLGGNRARRIRFWPKTGRVQ 154 (199)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 489999999999999997653 2356666655556543
No 268
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=22.81 E-value=1.2e+02 Score=25.19 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=22.4
Q ss_pred eeeeeEEEEe-CCHHHHHHHHHHhcCCEEee
Q 031406 38 VSVHHVGILC-ENLERSLEFYQNILGLEINE 67 (160)
Q Consensus 38 ~~i~hv~l~v-~D~~~a~~Fy~~~lG~~~~~ 67 (160)
.++..+.+.| .+-.++.+||++ |||+...
T Consensus 187 ~G~~~i~L~V~~~N~~Ai~fY~k-lGf~~~~ 216 (547)
T TIGR03103 187 RGCAYMDLSVMHDNEQAIALYEK-LGFRRIP 216 (547)
T ss_pred CCCCEEEEEEcCCCHHHHHHHHH-CCCEEee
Confidence 4567777776 566889999987 9998664
No 269
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=22.78 E-value=2.1e+02 Score=17.98 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHCCCeEe--ccC----------CCceEEEEEcCCCCeEEEEee
Q 031406 118 DVSKLKMILDKAGISYT--LSK----------SGRPAIFTRDPDANALEFTQV 158 (160)
Q Consensus 118 d~~~~~~~l~~~G~~~~--~~~----------~g~~~~~~~DPdG~~ie~~~~ 158 (160)
+.+++.+.+.+.++.+. .++ .+....++.|++|.++.....
T Consensus 72 ~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 72 DLANVKSAVLRYGITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred CHHHHHHHHHHcCCCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEec
Confidence 45555566666666432 111 234678999999998876543
No 270
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=22.62 E-value=1.9e+02 Score=20.67 Aligned_cols=36 Identities=8% Similarity=0.072 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHCCCeEeccC---CCceEEEEEcCCCCe
Q 031406 117 RDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 152 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~ 152 (160)
.|++.+.+.|.+.|+++.... ..+|.++|.--+|..
T Consensus 127 rNi~~a~~~L~~~gI~iva~DvGG~~gR~v~f~~~tG~v 165 (201)
T PRK13487 127 RNAEFVRDYLQTERIPIVAEDLLDIYPRKVYFFPTTGKV 165 (201)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEE
Confidence 489999999999999997653 235666665555544
No 271
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=22.58 E-value=1.9e+02 Score=17.34 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHCCCeEeccC-----CCceEEEEEcCCCCeEE
Q 031406 118 DVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPDANALE 154 (160)
Q Consensus 118 d~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPdG~~ie 154 (160)
++....+.|+++|+++.... .+...+.+..-+.|...
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg 50 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMG 50 (80)
T ss_pred CchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCccccc
Confidence 78899999999999997643 24556666776666543
No 272
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=22.44 E-value=2.4e+02 Score=20.07 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=30.9
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHCCCeEeccC-----CCceEEEEEcCC
Q 031406 106 GGRDRHTCIAIRDVSKLKMILDKAGISYTLSK-----SGRPAIFTRDPD 149 (160)
Q Consensus 106 ~~~~~hi~f~v~d~~~~~~~l~~~G~~~~~~~-----~g~~~~~~~DPd 149 (160)
|..+.+|.+.-.|+.+....+...|+.+.... ++...++|.-.|
T Consensus 31 g~~l~~i~i~~~~lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~FkA~D 79 (204)
T PF12687_consen 31 GKGLKNIEITDEDLKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFKAKD 79 (204)
T ss_pred CCCceEEecCHhhHHHHHHHHHHcCCceEEeeccCCCCCcEEEEEEcCc
Confidence 44467777777899999999999999886533 234455555433
No 273
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=22.36 E-value=2.6e+02 Score=19.05 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=36.4
Q ss_pred ceEEEEEeCCHHHHHHHHHHCCCeEec--cC----------------------CCceEEEEEcCCCCeEEEE
Q 031406 109 DRHTCIAIRDVSKLKMILDKAGISYTL--SK----------------------SGRPAIFTRDPDANALEFT 156 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~~~G~~~~~--~~----------------------~g~~~~~~~DPdG~~ie~~ 156 (160)
...+++++++.....+...+.|..+.- +. .-.|.-|+.|+||.+..++
T Consensus 65 a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 65 AVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 467899999999988888888887621 10 1247889999999988776
No 274
>PF09259 Fve: Fungal immunomodulatory protein Fve; InterPro: IPR015339 This entry represents the FIP-Fve (Fungal Immunomodulatory Protein Fve) is a major fruiting body protein from Flammulina velutipes, a mushroom possessing immunomodulatory activity. It stimulates lymphocyte mitogenesis, suppresses systemic anaphylaxis reactions and oedema, enhances transcription of IL-2, IFN-gamma and TNF-alpha, and haemagglutinates red blood cells. It appears to be a lectin with specificity for complex cell-surface carbohydrates. Fve adopts a tertiary structure consisting of an immunoglobulin-like beta-sandwich, with seven strands arranged in two beta sheets, in a Greek-key topology. It forms a non-covalently linked homodimer containing no Cys, His or Met residues; dimerisation occurs by 3-D domain swapping of the N-terminal helices and is stabilised predominantly by hydrophobic interactions []. ; GO: 0030246 carbohydrate binding, 0002682 regulation of immune system process; PDB: 3KCW_A 1OSY_B 3F3H_B.
Probab=22.19 E-value=1.7e+02 Score=18.05 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=10.8
Q ss_pred ceEEEEEcCC-CC--eEEEEe
Q 031406 140 RPAIFTRDPD-AN--ALEFTQ 157 (160)
Q Consensus 140 ~~~~~~~DPd-G~--~ie~~~ 157 (160)
.-.+|+.||| || .+-+.|
T Consensus 90 TIQV~VvdPdtgnse~~iiAq 110 (111)
T PF09259_consen 90 TIQVFVVDPDTGNSEDFIIAQ 110 (111)
T ss_dssp -EEEEEE-TTTTT--EEEEEE
T ss_pred eEEEEEEcCCCCCccceEEec
Confidence 3568899997 77 554444
No 275
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=22.02 E-value=1e+02 Score=20.43 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=19.5
Q ss_pred eeeEEEEe-CCHHHHHHHHHHhcCCEEee
Q 031406 40 VHHVGILC-ENLERSLEFYQNILGLEINE 67 (160)
Q Consensus 40 i~hv~l~v-~D~~~a~~Fy~~~lG~~~~~ 67 (160)
..++.+.| .+-.++.+||++ +|++...
T Consensus 100 ~~~i~~~v~~~N~~a~~ly~k-~G~~~~~ 127 (157)
T TIGR02406 100 VRHLETTITPDNQASRALFKA-LARRRGV 127 (157)
T ss_pred CCEEEEEEcCCCHHHHHHHHH-hCcccCC
Confidence 45566665 666788899977 9997643
No 276
>PRK10314 putative acyltransferase; Provisional
Probab=21.95 E-value=1.1e+02 Score=20.36 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=16.5
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeee
Q 031406 42 HVGILCENLERSLEFYQNILGLEINEA 68 (160)
Q Consensus 42 hv~l~v~D~~~a~~Fy~~~lG~~~~~~ 68 (160)
.+.|.+ ...+..||++ +||+....
T Consensus 111 ~i~L~a--~~~a~~fY~k-~GF~~~g~ 134 (153)
T PRK10314 111 PVYLGA--QAHLQNFYQS-FGFIPVTE 134 (153)
T ss_pred cEEEeh--HHHHHHHHHH-CCCEECCC
Confidence 344444 3567799988 99997664
No 277
>KOG2465 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.50 E-value=84 Score=24.03 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=16.2
Q ss_pred ceEEEEEeCCHHHHHHHHH
Q 031406 109 DRHTCIAIRDVSKLKMILD 127 (160)
Q Consensus 109 ~~hi~f~v~d~~~~~~~l~ 127 (160)
+.||||.|+|.++....+.
T Consensus 169 YP~icFavD~FdevF~dvv 187 (390)
T KOG2465|consen 169 YPEICFAVDDFDEVFDDVV 187 (390)
T ss_pred cceEEEEecCHHHhhhhhE
Confidence 5799999999999886654
No 278
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=21.27 E-value=2.6e+02 Score=18.59 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=31.1
Q ss_pred eeeeeEEEEeCCHHHHHHHHHHhcCCEEeeecCCCCCCcce-EEEEeCCcEEEEEecCC
Q 031406 38 VSVHHVGILCENLERSLEFYQNILGLEINEARPHDKLPYRG-AWLWVGAEMIHLMELPN 95 (160)
Q Consensus 38 ~~i~hv~l~v~D~~~a~~Fy~~~lG~~~~~~~~~~~~~~~~-~~~~~g~~~~~l~~~~~ 95 (160)
.++.-+++.|.|.+++.+-=.. +|.+...... +...... ..-.+|++.+.|++..+
T Consensus 72 ~sv~aiafrV~Da~~A~~rA~~-~GA~~~~~~~-~~~e~~~paI~g~G~sl~yfVdr~~ 128 (139)
T PF14696_consen 72 PSVCAIAFRVDDAAAAYERAVA-LGAEPVQEPT-GPGELNIPAIRGIGGSLHYFVDRYG 128 (139)
T ss_dssp SEEEEEEEEES-HHHHHHHHHH-TT--EEEEEE-ETT-BEEEEEE-CCC-EEEEEE--S
T ss_pred CEEEEEEEEeCCHHHHHHHHHH-cCCcCcccCC-CCCcEeeeeEEccCCCEEEEEecCC
Confidence 4789999999999999887665 8887765432 1111111 22234777777777643
No 279
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=21.25 E-value=2e+02 Score=17.89 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHCCCeEeccCCCceEEEEEcCCCCeEEE
Q 031406 118 DVSKLKMILDKAGISYTLSKSGRPAIFTRDPDANALEF 155 (160)
Q Consensus 118 d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG~~ie~ 155 (160)
|+.++..++..+|.. -.+.|++|+.-|+
T Consensus 22 d~~~L~~~lt~~GF~----------~tl~D~~G~~HeL 49 (96)
T PF11080_consen 22 DINELNNHLTRAGFS----------TTLTDEDGNPHEL 49 (96)
T ss_pred HHHHHHHHHHhcCce----------eEEecCCCCEeec
Confidence 677888888888774 3455666665554
No 280
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=21.22 E-value=2.8e+02 Score=19.15 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHCCCeEeccC---CCceEEEEEcCCCCe
Q 031406 117 RDVSKLKMILDKAGISYTLSK---SGRPAIFTRDPDANA 152 (160)
Q Consensus 117 ~d~~~~~~~l~~~G~~~~~~~---~g~~~~~~~DPdG~~ 152 (160)
.|++.+.+.|++.|+++.... ..+|.++|.--+|-.
T Consensus 114 rNv~~~~~~L~~~~IpilaeD~Gg~~gR~i~F~p~tG~v 152 (164)
T COG1871 114 RNVEFAKEFLKDEGIPILAEDTGGDSGRTIEFNPSTGRV 152 (164)
T ss_pred HHHHHHHHHHHHcCCcEEEhhhCCCCCcEEEEecCCCcE
Confidence 488999999999999997653 345777765556643
No 281
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=21.10 E-value=2.3e+02 Score=17.89 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=12.8
Q ss_pred eEEEEEcCCCCeEEEE
Q 031406 141 PAIFTRDPDANALEFT 156 (160)
Q Consensus 141 ~~~~~~DPdG~~ie~~ 156 (160)
...++.|++|.+....
T Consensus 111 p~~~lid~~G~v~~~~ 126 (140)
T cd03017 111 RSTFLIDPDGKIVKVW 126 (140)
T ss_pred eeEEEECCCCEEEEEE
Confidence 5689999999877654
No 282
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=20.88 E-value=2.9e+02 Score=18.91 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=28.1
Q ss_pred HHHHHHHHHHCCCeEecc-------C-CCceEEEEEcC-CCCeEEEEee
Q 031406 119 VSKLKMILDKAGISYTLS-------K-SGRPAIFTRDP-DANALEFTQV 158 (160)
Q Consensus 119 ~~~~~~~l~~~G~~~~~~-------~-~g~~~~~~~DP-dG~~ie~~~~ 158 (160)
+.+..++|.+.|+++.-- . .+...+.++|- +|..+.|.|.
T Consensus 16 L~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~ 64 (159)
T PF10649_consen 16 LAAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQD 64 (159)
T ss_pred HHHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeec
Confidence 456778999999998421 1 22345667776 7999999885
No 283
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=20.58 E-value=2.3e+02 Score=20.13 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=22.9
Q ss_pred EeCCHHHHHHHHHHCCCeEeccCCCceEEEEEcCCC
Q 031406 115 AIRDVSKLKMILDKAGISYTLSKSGRPAIFTRDPDA 150 (160)
Q Consensus 115 ~v~d~~~~~~~l~~~G~~~~~~~~g~~~~~~~DPdG 150 (160)
.+.+.+++.+.|.+.|+.+.....+...+.+.|.++
T Consensus 183 ~~~s~~~f~~~L~~~g~~v~~~~~~~~~~~~~~~~~ 218 (242)
T PF03432_consen 183 KSSSFEDFIERLEEKGIEVRRKRGKYISYKLKDKNK 218 (242)
T ss_pred hCCCHHHHHHHHHHCCCEEEEcCCCeEEEecCCCCc
Confidence 345888899999999999983333333333344443
No 284
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=20.50 E-value=1.4e+02 Score=21.92 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=20.2
Q ss_pred eeeeEEEEe-CCHHHHHHHHHHhcCCEEee
Q 031406 39 SVHHVGILC-ENLERSLEFYQNILGLEINE 67 (160)
Q Consensus 39 ~i~hv~l~v-~D~~~a~~Fy~~~lG~~~~~ 67 (160)
++..+.+.| .+-..+.+||++ +||+...
T Consensus 259 g~~~v~l~v~~~N~~a~~~y~k-~GF~~~~ 287 (292)
T TIGR03448 259 GLPAVMLYVEADNEAAVRTYEK-LGFTVAE 287 (292)
T ss_pred CCCEEEEEEeCCCHHHHHHHHH-cCCEEcc
Confidence 456677766 334788999987 9998754
No 285
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=20.42 E-value=1.3e+02 Score=17.18 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=19.2
Q ss_pred ceEEEEEeC----CHHHHHHHHHHCCCeEe
Q 031406 109 DRHTCIAIR----DVSKLKMILDKAGISYT 134 (160)
Q Consensus 109 ~~hi~f~v~----d~~~~~~~l~~~G~~~~ 134 (160)
+.++.+.+. +++++.++|+++|+.+.
T Consensus 45 ~G~l~l~l~g~~~~~~~a~~~L~~~~v~vE 74 (76)
T PF09383_consen 45 FGILILELPGDDEEIEKAIAYLREQGVEVE 74 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHTTEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHHHHHCCCeEE
Confidence 455666653 57889999999998774
No 286
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=20.28 E-value=2.4e+02 Score=17.71 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCCceE-EEEEeCCHHHHHHHHHHCCCeEecc
Q 031406 97 DPLSGRPEHGGRDRH-TCIAIRDVSKLKMILDKAGISYTLS 136 (160)
Q Consensus 97 ~~~~~~~~~~~~~~h-i~f~v~d~~~~~~~l~~~G~~~~~~ 136 (160)
++..+....++-+.+ +.+.-++.+++.+.++++|+.+...
T Consensus 35 ~PLMGWtss~D~~~q~v~l~F~skE~Ai~yaer~G~~Y~V~ 75 (101)
T PF04800_consen 35 NPLMGWTSSGDPLSQSVRLKFDSKEDAIAYAERNGWDYEVE 75 (101)
T ss_dssp -TTT-SSSS--SEEE-CEEEESSHHHHHHHHHHCT-EEEEE
T ss_pred CCccCCCCCCChhhCeeEeeeCCHHHHHHHHHHcCCeEEEe
Confidence 444455555555665 8899999999999999999988653
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=20.20 E-value=99 Score=14.06 Aligned_cols=17 Identities=41% Similarity=0.684 Sum_probs=12.5
Q ss_pred eCCHHHHHHHHHHhcCC
Q 031406 47 CENLERSLEFYQNILGL 63 (160)
Q Consensus 47 v~D~~~a~~Fy~~~lG~ 63 (160)
..+.++|...|++.+-+
T Consensus 14 ~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 14 LGDYEEALEYYQRALEL 30 (34)
T ss_dssp TT-HHHHHHHHHHHHHH
T ss_pred hCCchHHHHHHHHHHHH
Confidence 46889999999887643
No 288
>PF10033 ATG13: Autophagy-related protein 13; InterPro: IPR018731 Members of this family of phosphoproteins are involved in cytoplasm to vacuole transport (Cvt), and more specifically in Cvt vesicle formation. They are probably involved in the switching machinery regulating the conversion between the Cvt pathway and autophagy. Finally, ATG13 is also required for glycogen storage [, , ].
Probab=20.05 E-value=1.9e+02 Score=20.93 Aligned_cols=48 Identities=15% Similarity=0.240 Sum_probs=31.0
Q ss_pred eEEEEEeCCHHHHHHHHHHCCC-----e----Eecc-------CCCceEEEEEcCCCCeEEEEe
Q 031406 110 RHTCIAIRDVSKLKMILDKAGI-----S----YTLS-------KSGRPAIFTRDPDANALEFTQ 157 (160)
Q Consensus 110 ~hi~f~v~d~~~~~~~l~~~G~-----~----~~~~-------~~g~~~~~~~DPdG~~ie~~~ 157 (160)
.+|.+++++.+++.+.++..-- . +..+ -.....+.+.|.+|+.|.+++
T Consensus 37 kWFNL~~~e~~~~~~~l~~w~~~~~~~~~~pPlvIei~Ld~~~l~~~~~l~l~d~~g~~~~v~~ 100 (233)
T PF10033_consen 37 KWFNLEIDESDELREELKRWRSCSDLESRLPPLVIEIYLDTRQLSSNQSLVLKDDDGKRWDVCK 100 (233)
T ss_pred ccEeecCCCcHHHHHHHHHhhhcccccCCCCCEEEEEEEecCCCCCCCceEecCCCCceeeecc
Confidence 4688888888777655544221 1 1110 134677889999999998865
Done!