Citrus Sinensis ID: 031407

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MARFLLSKTSTAIATAGASSRHHHLQLSIPSSRLVPRRTQSNQPDASSDVYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLVEKLANPLTPEQSLSTSTVRGWPSSDYYIKGKPLHKVEEGSTSSNESEAEDEEG
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHccccccccccccccccHHHHHHcccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHcccccHHHHHcccccccccccHHEEccccccccccccccccHHHHHcccc
Coil and Loop (DISEMBL)
MARFLLSKTSTAIAtagassrhhhlqlsipssrlvprrtqsnqpdassdvyetsgssstdpliSKLEDAIHRIIVRrsapdwlpflpgssywvpppksqfYGVAQLVEKLanpltpeqslststvrgwpssdyyikgkplhkveegstssneseaedeeg
Flexible Loop (DISEMBL)
MARFLLSKTSTAIAtagassrhhhlqlsipssrlvprrtqsnqpdassdvyetsgssstdpliSKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLVEKLANpltpeqslststvrgwpssdYYIKGkplhkveegstssneseaedeeg
Low Complexity Region (SEG)
MARFLLsktstaiatagassRHHHLQLSIPSSRLVPRRTQSNQPDASSDVYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLVEKLANPLTPEQSLSTSTVRGWPSSDYYIKGKPLHKVEEGSTSSNESEAEDEEG
Disordered region (IsUnstruct)
****************************************************************KLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLVEKLA********************DYYI*************************
Disordered Region (DISOPRED)
******SKTSTAIA****************************************************EDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLVEKLA**********TSTVRGWPSSDYYIKGKP*********************
Disordered Region (DISEMBL)
MARFLLSKTSTAIA************LSIPSSRL**************************PLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLVEKLANP************RGWPSSDYYIKGKPL********************
Disordered Region (DISPRO)
**************************************************YE**GSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLVEKLANPLTPEQSLSTSTVRGWPSSDYYIKGK**********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MARFLLSKTSTAIATAGASSRHHHLQLSIPSSRLVPRRTQSNQPDASSDVYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLVEKLANPLTPEQSLSTSTVRGWPSSDYYIKGKPLHKVEEGSTSSNESEAEDEEG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
224113249	167	predicted protein [Populus trichocarpa]	0.812	0.778	0.615	4e-37
224100509	165	predicted protein [Populus trichocarpa]	0.812	0.787	0.631	4e-37
255544526	177	conserved hypothetical protein [Ricinus	0.768	0.694	0.610	2e-36
297839755	152	hypothetical protein ARALYDRAFT_477053 [	0.806	0.848	0.556	6e-32
18394407	161	uncharacterized protein [Arabidopsis tha	0.75	0.745	0.584	1e-31
297850084	161	hypothetical protein ARALYDRAFT_471880 [	0.775	0.770	0.567	5e-31
21592720	155	unknown [Arabidopsis thaliana]	0.675	0.696	0.609	4e-30
18412160	155	uncharacterized protein [Arabidopsis tha	0.675	0.696	0.609	4e-30
3834306	156	EST gb|R65024 comes from this gene [Arab	0.668	0.685	0.616	3e-29
30685027	161	uncharacterized protein [Arabidopsis tha	0.612	0.608	0.622	1e-28

>gi|224113249|ref|XP_002316436.1| predicted protein [Populus trichocarpa] gi|222865476|gb|EEF02607.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/143 (61%), Positives = 104/143 (72%), Gaps = 13/143 (9%)

Query: 31  SSRLVPRRTQSNQPDASSDVYETSGSSS--TDPLISKLEDAIHRIIVRRSAPDWLPFLPG 88
           SSRL+  R QSN P+ ++       SSS  TDPL+ KLEDAIH IIVRR+APDWLPFLPG
Sbjct: 25  SSRLLTLRAQSNVPNRNNQSESDDSSSSSSTDPLLRKLEDAIHGIIVRRAAPDWLPFLPG 84

Query: 89  SSYWVPPPKSQ--FYGVAQLVEKLANPLTPEQSLSTSTVRGWPSSDYYIKGKPLH----- 141
           SSYWVPPP+S     G+A LVEKLANPL+ E+SLSTSTVRGWPSSDY++KG         
Sbjct: 85  SSYWVPPPRSASGSLGIAHLVEKLANPLSDEESLSTSTVRGWPSSDYFVKGASSQLVEVK 144

Query: 142 ----KVEEGSTSSNESEAEDEEG 160
               KVE  +T+SN S++EDEEG
Sbjct: 145 LNSKKVEADTTTSNTSQSEDEEG 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100509|ref|XP_002311904.1| predicted protein [Populus trichocarpa] gi|222851724|gb|EEE89271.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 91/144 (63%), Positives = 108/144 (75%), Gaps = 14/144 (9%)

Query: 31  SSRLVPRRTQSNQPDASS---DVYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLP 87
           SSRL+  R QSN P+++S       +S SSSTDPL+ KLEDAIHRIIVRR+APDWLPFLP
Sbjct: 22  SSRLLTLRAQSNIPNSNSPSETDDSSSASSSTDPLLRKLEDAIHRIIVRRAAPDWLPFLP 81

Query: 88  GSSYWVPPPKSQ--FYGVAQLVEKLANPLTPEQSLSTSTVRGWPSSDYYIKGKPLH---- 141
           GSSYWVP P+S     G+A LVEKLANPL+ E+SLST+TVRGWPSSDY++KG P H    
Sbjct: 82  GSSYWVPSPRSTSGSLGIAHLVEKLANPLSDEESLSTTTVRGWPSSDYFVKGAPAHMMEL 141

Query: 142 -----KVEEGSTSSNESEAEDEEG 160
                +VE  +TSSN S +EDEEG
Sbjct: 142 KLTSKEVESDTTSSNVSHSEDEEG 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544526|ref|XP_002513324.1| conserved hypothetical protein [Ricinus communis] gi|223547232|gb|EEF48727.1| conserved hypothetical protein [Ricinus communis]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/136 (61%), Positives = 100/136 (73%), Gaps = 13/136 (9%)

Query: 32  SRLVPRRTQSNQPDASSDVYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGSSY 91
           SRL+  R QSN P+  +D+ E S  S+TDPL+ KLEDAIHRIIVRR+APDWLPFLPGSSY
Sbjct: 21  SRLLAFRAQSNTPNHLADISEES--STTDPLLRKLEDAIHRIIVRRAAPDWLPFLPGSSY 78

Query: 92  WVPPPKSQ--FYGVAQLVEKLANPLTPEQSLSTSTVRGWPSSDYYIKGK---------PL 140
           WVPPP+S     G+AQLVEKLANPLT EQSLST+TVRGWPSSD++ +             
Sbjct: 79  WVPPPRSTGGSLGIAQLVEKLANPLTDEQSLSTTTVRGWPSSDFFFQDASPRTIEVKMTS 138

Query: 141 HKVEEGSTSSNESEAE 156
           +K E+   +SN+SE E
Sbjct: 139 NKFEDAKPTSNKSEVE 154

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839755|ref|XP_002887759.1| hypothetical protein ARALYDRAFT_477053 [Arabidopsis lyrata subsp. lyrata] gi|297333600|gb|EFH64018.1| hypothetical protein ARALYDRAFT_477053 [Arabidopsis lyrata subsp. lyrata]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 74/133 (55%), Positives = 104/133 (78%), Gaps = 4/133 (3%)

Query: 29  IPSSRLVPRRTQSN--QPDASSDVYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFL 86
           +PSS+ +  R+QS+  + +   ++YE   ++  DPL+ KLEDA+HRI+VRRSAPDWLPF+
Sbjct: 22  LPSSQTIFFRSQSSNRRFNRFGEIYEIDIAA--DPLLHKLEDAVHRIMVRRSAPDWLPFV 79

Query: 87  PGSSYWVPPPKSQFYGVAQLVEKLANPLTPEQSLSTSTVRGWPSSDYYIKGKPLHKVEEG 146
           PG+SYWVPPP+SQ +G+A+LVEKLANP++ E+S+S S+VRGWP SDY+IKG     VE  
Sbjct: 80  PGASYWVPPPRSQTHGIAKLVEKLANPISDEESISISSVRGWPCSDYFIKGVKPQSVETE 139

Query: 147 STSSNESEAEDEE 159
            TS+  S+++DEE
Sbjct: 140 MTSNTASDSDDEE 152

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394407|ref|NP_564007.1| uncharacterized protein [Arabidopsis thaliana] gi|30685032|ref|NP_849677.1| uncharacterized protein [Arabidopsis thaliana] gi|42571511|ref|NP_973846.1| uncharacterized protein [Arabidopsis thaliana] gi|9802780|gb|AAF99849.1|AC051629_16 Unknown protein [Arabidopsis thaliana] gi|15450363|gb|AAK96475.1| At1g16840/F17F16.27 [Arabidopsis thaliana] gi|332191384|gb|AEE29505.1| uncharacterized protein [Arabidopsis thaliana] gi|332191386|gb|AEE29507.1| uncharacterized protein [Arabidopsis thaliana] gi|332191387|gb|AEE29508.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/130 (58%), Positives = 100/130 (76%), Gaps = 10/130 (7%)

Query: 38  RTQSNQPDASSDVYETSGSSST----DPLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWV 93
           R+QS+  D   D+YE   S+++    DPLI KLEDA+HRI VRR+ PDWLPF+PG+SYWV
Sbjct: 33  RSQSS--DRRGDLYEIDTSAASQSPSDPLIQKLEDAVHRIFVRRAQPDWLPFVPGASYWV 90

Query: 94  PPP--KSQFYGVAQLVEKLANPLTPEQSLSTSTVRGWPSSDYYIKG-KP-LHKVEEGSTS 149
           PPP   SQ +G+AQLV KLANPLT E+SLST++  GWPSSDY++KG +P L + +  +TS
Sbjct: 91  PPPGSGSQSHGIAQLVVKLANPLTHEESLSTNSSHGWPSSDYFLKGVQPQLMETKTETTS 150

Query: 150 SNESEAEDEE 159
           ++ES +EDEE
Sbjct: 151 NSESHSEDEE 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850084|ref|XP_002892923.1| hypothetical protein ARALYDRAFT_471880 [Arabidopsis lyrata subsp. lyrata] gi|297338765|gb|EFH69182.1| hypothetical protein ARALYDRAFT_471880 [Arabidopsis lyrata subsp. lyrata]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 76/134 (56%), Positives = 98/134 (73%), Gaps = 10/134 (7%)

Query: 35  VPRRTQSNQPDASSDVYE----TSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGSS 90
           V  R+QS+  D   D+YE     +  S +DPLI KLEDA+HRI VRR+ PDWLPF+PG+S
Sbjct: 30  VSFRSQSS--DRRVDLYEIDTAAASQSPSDPLIQKLEDAVHRIFVRRAQPDWLPFVPGAS 87

Query: 91  YWVPPP--KSQFYGVAQLVEKLANPLTPEQSLSTSTVRGWPSSDYYIKG-KP-LHKVEEG 146
           YWVPPP   SQ +G+AQLV KLANPLT E+SLST++  GWPSSDY++KG +P L + +  
Sbjct: 88  YWVPPPGSGSQSHGIAQLVVKLANPLTHEESLSTNSSHGWPSSDYFLKGVQPQLMETKTE 147

Query: 147 STSSNESEAEDEEG 160
           + S+ ES +EDEE 
Sbjct: 148 AASNTESHSEDEEA 161

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592720|gb|AAM64669.1| unknown [Arabidopsis thaliana]

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/110 (60%), Positives = 89/110 (80%), Gaps = 2/110 (1%)

Query: 50  VYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLVEK 109
           +YE   ++  DPL++KLEDA+HRI+VRRSAPDWLPF+PG+S+WVPPP+SQ +G+A+LVEK
Sbjct: 48  IYEIDIAA--DPLVNKLEDAVHRIMVRRSAPDWLPFVPGASFWVPPPRSQSHGIAKLVEK 105

Query: 110 LANPLTPEQSLSTSTVRGWPSSDYYIKGKPLHKVEEGSTSSNESEAEDEE 159
           LANP++ E+S+S S+VRGWP SDY+IKG     VE   TS+    +EDEE
Sbjct: 106 LANPISDEESISISSVRGWPCSDYFIKGVKPQSVETEMTSNTAYHSEDEE 155

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412160|ref|NP_565193.1| uncharacterized protein [Arabidopsis thaliana] gi|98961095|gb|ABF59031.1| At1g78890 [Arabidopsis thaliana] gi|110738174|dbj|BAF01018.1| hypothetical protein [Arabidopsis thaliana] gi|332198048|gb|AEE36169.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/110 (60%), Positives = 89/110 (80%), Gaps = 2/110 (1%)

Query: 50  VYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLVEK 109
           +YE   ++  DPL++KLEDA+HRI+VRRSAPDWLPF+PG+S+WVPPP+SQ +G+A+LVEK
Sbjct: 48  IYEIDIAA--DPLVNKLEDAVHRIMVRRSAPDWLPFVPGASFWVPPPRSQSHGIAKLVEK 105

Query: 110 LANPLTPEQSLSTSTVRGWPSSDYYIKGKPLHKVEEGSTSSNESEAEDEE 159
           LANP++ E+S+S S+VRGWP SDY+IKG     VE   TS+    +EDEE
Sbjct: 106 LANPISDEESISISSVRGWPCSDYFIKGVKPQSVETEMTSNTAYHSEDEE 155

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3834306|gb|AAC83022.1| EST gb|R65024 comes from this gene [Arabidopsis thaliana]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/112 (61%), Positives = 90/112 (80%), Gaps = 5/112 (4%)

Query: 50  VYETSGSSSTDPLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLVEK 109
           +YE     + DPL++KLEDA+HRI+VRRSAPDWLPF+PG+S+WVPPP+SQ +G+A+LVEK
Sbjct: 48  IYEID--IAADPLVNKLEDAVHRIMVRRSAPDWLPFVPGASFWVPPPRSQSHGIAKLVEK 105

Query: 110 LANPLTPEQSLSTSTVRGWPSSDYYIKG--KPLHKVEEGSTSSNESEAEDEE 159
           LANP++ E+S+S S+VRGWP SDY+IKG  KP   VE   TS+    +EDEE
Sbjct: 106 LANPISDEESISISSVRGWPCSDYFIKGGVKP-QSVETEMTSNTAYHSEDEE 156

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685027|ref|NP_849676.1| uncharacterized protein [Arabidopsis thaliana] gi|16930409|gb|AAL31890.1|AF419558_1 At1g16840/F17F16.27 [Arabidopsis thaliana] gi|19310507|gb|AAL84987.1| At1g16840/F17F16.27 [Arabidopsis thaliana] gi|332191385|gb|AEE29506.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 83/106 (78%), Gaps = 8/106 (7%)

Query: 38  RTQSNQPDASSDVYETSGSSST----DPLISKLEDAIHRIIVRRSAPDWLPFLPGSSYWV 93
           R+QS+  D   D+YE   S+++    DPLI KLEDA+HRI VRR+ PDWLPF+PG+SYWV
Sbjct: 33  RSQSS--DRRGDLYEIDTSAASQSPSDPLIQKLEDAVHRIFVRRAQPDWLPFVPGASYWV 90

Query: 94  PPP--KSQFYGVAQLVEKLANPLTPEQSLSTSTVRGWPSSDYYIKG 137
           PPP   SQ +G+AQLV KLANPLT E+SLST++  GWPSSDY++KG
Sbjct: 91  PPPGSGSQSHGIAQLVVKLANPLTHEESLSTNSSHGWPSSDYFLKG 136

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
TAIR|locus:2035510	161	AT1G16840 "AT1G16840" [Arabido	0.806	0.801	0.597	8e-37
TAIR|locus:2037513	155	AT1G78890 "AT1G78890" [Arabido	0.818	0.845	0.547	3.5e-36
TAIR|locus:2059073	179	AT2G19180 "AT2G19180" [Arabido	0.568	0.508	0.484	1.5e-19

TAIR|locus:2035510 AT1G16840 "AT1G16840" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 83/139 (59%), Positives = 107/139 (76%)

Query:    29 IPSSRLVPRRTQSNQPDASSDVYE--TSGSSST--DPLISKLEDAIHRIIVRRSAPDWLP 84
             +PSS LV  R+QS+  D   D+YE  TS +S +  DPLI KLEDA+HRI VRR+ PDWLP
Sbjct:    24 LPSSHLVSFRSQSS--DRRGDLYEIDTSAASQSPSDPLIQKLEDAVHRIFVRRAQPDWLP 81

Query:    85 FLPGSSYWVPPPKS--QFYGVAQLVEKLANPLTPEQSLSTSTVRGWPSSDYYIKG-KP-L 140
             F+PG+SYWVPPP S  Q +G+AQLV KLANPLT E+SLST++  GWPSSDY++KG +P L
Sbjct:    82 FVPGASYWVPPPGSGSQSHGIAQLVVKLANPLTHEESLSTNSSHGWPSSDYFLKGVQPQL 141

Query:   141 HKVEEGSTSSNESEAEDEE 159
              + +  +TS++ES +EDEE
Sbjct:   142 METKTETTSNSESHSEDEE 160

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2037513 AT1G78890 "AT1G78890" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 75/137 (54%), Positives = 104/137 (75%)

Query:    27 LSIPSSRLVPRRTQSNQPDASSD----VYETSGSSSTDPLISKLEDAIHRIIVRRSAPDW 82
             L +PSS+ +  R+QS+   ++S+    +YE     + DPL++KLEDA+HRI+VRRSAPDW
Sbjct:    21 LLLPSSQTIFIRSQSSNRRSNSNHLGVIYEID--IAADPLVNKLEDAVHRIMVRRSAPDW 78

Query:    83 LPFLPGSSYWVPPPKSQFYGVAQLVEKLANPLTPEQSLSTSTVRGWPSSDYYIKGKPLHK 142
             LPF+PG+S+WVPPP+SQ +G+A+LVEKLANP++ E+S+S S+VRGWP SDY+IKG     
Sbjct:    79 LPFVPGASFWVPPPRSQSHGIAKLVEKLANPISDEESISISSVRGWPCSDYFIKGVKPQS 138

Query:   143 VEEGSTSSNESEAEDEE 159
             VE   TS+    +EDEE
Sbjct:   139 VETEMTSNTAYHSEDEE 155

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2059073 AT2G19180 "AT2G19180" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 47/97 (48%), Positives = 63/97 (64%)

Query:    62 LISKLEDAIHRIIVRRSAPDWLPFLPGSSYWVPPPKSQFYGVAQLVEKLANPLTPEQSLS 121
             ++ KL + + RIIV  S PDWLPF PGSS+WVPP +     +A LV+K+ NPLT E+SLS
Sbjct:    59 ILKKLNEFVRRIIVHNSTPDWLPFAPGSSFWVPPHQITATKIANLVDKVTNPLTEEESLS 118

Query:   122 TSTVRGWPSSDYYIKGKPLHKVEEGSTSSNESEAEDE 158
              S+  GWP S ++I   P     +GS+S+ E EA  E
Sbjct:   119 LSSPYGWPCSSFFIP-PP-----DGSSSTQEEEASVE 149


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.128   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      160       146   0.00079  103 3  11 23  0.41    32
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  135 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.23u 0.09s 18.32t   Elapsed:  00:00:01
  Total cpu time:  18.23u 0.09s 18.32t   Elapsed:  00:00:01
  Start:  Sat May 11 01:02:18 2013   End:  Sat May 11 01:02:19 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_VIII0041 hypothetical protein (165 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00