Query 031408
Match_columns 160
No_of_seqs 132 out of 1107
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 13:41:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 2.8E-55 6E-60 312.5 17.4 148 6-158 5-152 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 4.4E-55 9.6E-60 305.0 14.4 146 7-158 2-147 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 4.3E-53 9.2E-58 287.4 14.7 148 1-156 1-148 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 2.8E-51 6.1E-56 294.8 18.4 146 7-158 3-148 (152)
5 PLN00172 ubiquitin conjugating 100.0 2.1E-50 4.5E-55 289.1 18.1 145 7-157 2-146 (147)
6 KOG0424 Ubiquitin-protein liga 100.0 3.9E-50 8.5E-55 276.8 16.6 156 1-158 1-157 (158)
7 KOG0425 Ubiquitin-protein liga 100.0 4.8E-49 1E-53 275.0 16.2 153 1-157 1-164 (171)
8 KOG0426 Ubiquitin-protein liga 100.0 1.3E-46 2.7E-51 256.0 14.6 151 1-156 1-162 (165)
9 KOG0418 Ubiquitin-protein liga 100.0 1.5E-45 3.3E-50 264.6 14.0 149 1-158 1-153 (200)
10 PF00179 UQ_con: Ubiquitin-con 100.0 1.1E-44 2.4E-49 258.0 15.2 140 10-153 1-140 (140)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 2.3E-44 5.1E-49 256.6 16.3 140 9-153 2-141 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 2E-43 4.4E-48 252.9 17.3 144 9-157 1-145 (145)
13 KOG0421 Ubiquitin-protein liga 100.0 2.4E-42 5.3E-47 238.2 12.2 144 5-155 28-171 (175)
14 KOG0422 Ubiquitin-protein liga 100.0 5.9E-41 1.3E-45 230.2 14.2 147 7-158 3-149 (153)
15 KOG0416 Ubiquitin-protein liga 100.0 2.3E-38 5E-43 224.2 11.6 144 7-159 4-149 (189)
16 KOG0420 Ubiquitin-protein liga 100.0 3.7E-37 8.1E-42 218.4 11.9 147 5-157 27-174 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 1E-36 2.3E-41 216.3 7.4 147 7-159 11-157 (223)
18 KOG0427 Ubiquitin conjugating 100.0 1.9E-31 4E-36 181.6 11.5 122 5-133 14-137 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 1.3E-30 2.8E-35 191.2 14.9 117 1-126 1-120 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 2.2E-26 4.7E-31 169.5 12.8 144 8-158 21-170 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 6.7E-24 1.5E-28 158.7 10.7 112 5-125 10-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.8 2.4E-18 5.2E-23 150.1 8.6 115 9-127 854-977 (1101)
23 KOG0896 Ubiquitin-conjugating 99.7 2.4E-16 5.2E-21 108.3 7.6 117 6-122 5-122 (138)
24 KOG0895 Ubiquitin-conjugating 99.7 5.9E-16 1.3E-20 135.4 10.3 114 6-123 282-404 (1101)
25 KOG0897 Predicted ubiquitin-co 98.7 2.7E-08 5.8E-13 66.9 5.7 93 59-153 13-110 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.7 5.3E-08 1.2E-12 68.6 7.5 66 55-122 34-105 (133)
27 PF05743 UEV: UEV domain; Int 98.5 7.4E-07 1.6E-11 61.8 7.2 79 37-122 30-116 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.2 5E-07 1.1E-11 63.2 2.0 97 7-114 25-135 (161)
29 KOG2391 Vacuolar sorting prote 97.9 7.6E-05 1.7E-09 59.4 8.8 85 34-125 47-139 (365)
30 KOG3357 Uncharacterized conser 97.6 0.00012 2.6E-09 50.6 4.6 96 7-113 28-137 (167)
31 PF05773 RWD: RWD domain; Int 96.5 0.026 5.6E-07 37.7 7.8 69 8-81 3-73 (113)
32 smart00591 RWD domain in RING 96.2 0.094 2E-06 34.6 9.1 26 56-81 40-65 (107)
33 PF14462 Prok-E2_E: Prokaryoti 96.0 0.1 2.3E-06 36.1 8.7 81 40-121 24-119 (122)
34 PF14457 Prok-E2_A: Prokaryoti 95.2 0.28 6E-06 35.7 9.1 62 60-122 56-125 (162)
35 PF09765 WD-3: WD-repeat regio 91.8 0.4 8.6E-06 38.2 5.1 85 8-121 101-186 (291)
36 KOG4018 Uncharacterized conser 87.6 2.7 5.8E-05 31.9 6.3 63 9-78 5-70 (215)
37 PF14460 Prok-E2_D: Prokaryoti 83.9 1.8 3.9E-05 31.7 3.9 46 79-129 89-137 (175)
38 KOG0309 Conserved WD40 repeat- 82.2 7.3 0.00016 35.1 7.4 66 9-80 423-490 (1081)
39 PF06113 BRE: Brain and reprod 69.2 18 0.00039 29.4 6.0 60 53-120 61-123 (333)
40 TIGR03737 PRTRC_B PRTRC system 68.5 10 0.00023 29.1 4.4 44 80-129 131-178 (228)
41 PF00845 Gemini_BL1: Geminivir 64.6 19 0.00041 28.0 5.0 46 37-83 100-154 (276)
42 KOG3285 Spindle assembly check 56.8 28 0.00061 25.8 4.6 58 4-76 117-174 (203)
43 smart00340 HALZ homeobox assoc 52.2 15 0.00033 20.4 2.0 15 7-21 20-34 (44)
44 cd00421 intradiol_dioxygenase 47.9 27 0.00058 24.7 3.3 24 56-79 65-89 (146)
45 KOG0744 AAA+-type ATPase [Post 47.5 26 0.00056 28.8 3.5 68 37-126 171-250 (423)
46 PF12652 CotJB: CotJB protein; 46.3 49 0.0011 21.0 4.0 32 127-158 24-55 (78)
47 PF03366 YEATS: YEATS family; 45.0 81 0.0018 20.1 5.1 42 40-83 2-43 (84)
48 cd03457 intradiol_dioxygenase_ 41.0 38 0.00083 25.2 3.3 25 55-79 85-109 (188)
49 PF14135 DUF4302: Domain of un 39.7 1.1E+02 0.0024 23.3 5.9 72 6-92 9-104 (235)
50 PF04881 Adeno_GP19K: Adenovir 39.6 30 0.00065 24.2 2.4 29 37-65 45-74 (139)
51 PF06152 Phage_min_cap2: Phage 38.6 1.6E+02 0.0035 24.2 6.9 59 41-110 226-293 (361)
52 PF06113 BRE: Brain and reprod 38.5 39 0.00084 27.5 3.2 23 58-80 307-329 (333)
53 KOG4445 Uncharacterized conser 37.4 44 0.00096 26.9 3.3 25 57-81 45-69 (368)
54 cd03459 3,4-PCD Protocatechuat 36.6 51 0.0011 23.8 3.3 25 56-80 72-101 (158)
55 cd05845 Ig2_L1-CAM_like Second 35.5 90 0.0019 20.4 4.1 26 54-81 16-41 (95)
56 KOG0177 20S proteasome, regula 33.9 11 0.00025 28.0 -0.4 31 90-122 135-165 (200)
57 KOG4274 Positive cofactor 2 (P 33.8 2.2E+02 0.0047 25.3 7.0 52 10-72 623-674 (742)
58 PF13950 Epimerase_Csub: UDP-g 33.4 48 0.001 19.8 2.4 19 103-121 37-55 (62)
59 cd07981 TAF12 TATA Binding Pro 33.3 87 0.0019 19.2 3.6 43 116-158 6-48 (72)
60 smart00107 BTK Bruton's tyrosi 33.1 20 0.00042 19.3 0.5 14 82-95 7-21 (36)
61 KOG0662 Cyclin-dependent kinas 28.8 64 0.0014 24.4 2.8 57 71-127 167-225 (292)
62 PF00779 BTK: BTK motif; Inte 27.0 21 0.00045 18.6 -0.0 14 82-95 2-16 (32)
63 KOG1047 Bifunctional leukotrie 26.5 66 0.0014 28.2 2.8 29 52-81 248-279 (613)
64 PF09943 DUF2175: Uncharacteri 26.0 71 0.0015 21.4 2.4 20 40-61 1-20 (101)
65 TIGR02423 protocat_alph protoc 25.0 96 0.0021 23.2 3.2 24 56-79 96-124 (193)
66 KOG1814 Predicted E3 ubiquitin 24.5 67 0.0014 27.0 2.4 19 61-79 78-97 (445)
67 PF09280 XPC-binding: XPC-bind 23.0 1.4E+02 0.003 17.7 3.1 22 129-150 33-54 (59)
68 cd03463 3,4-PCD_alpha Protocat 22.6 1.2E+02 0.0025 22.5 3.3 23 57-79 93-120 (185)
69 COG1225 Bcp Peroxiredoxin [Pos 22.3 1.3E+02 0.0027 21.8 3.3 34 83-120 122-155 (157)
70 COG3866 PelB Pectate lyase [Ca 21.6 1.5E+02 0.0032 24.2 3.7 38 41-79 198-239 (345)
71 PF12065 DUF3545: Protein of u 21.6 65 0.0014 19.3 1.4 11 8-18 36-46 (59)
72 PF10875 DUF2670: Protein of u 21.6 1.3E+02 0.0028 20.9 3.0 58 94-160 71-128 (139)
73 PF12018 DUF3508: Domain of un 21.5 1.4E+02 0.0029 23.6 3.6 29 129-157 238-266 (281)
74 PF04314 DUF461: Protein of un 20.7 1.3E+02 0.0028 20.0 2.9 26 42-67 78-103 (110)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-55 Score=312.49 Aligned_cols=148 Identities=46% Similarity=0.816 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 031408 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP 85 (160)
Q Consensus 6 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 85 (160)
.|.+||++|++.|+++++.++++.+..+ +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|+++||||
T Consensus 5 ~a~~RL~kE~~~l~~~~~~~~~a~p~~d---~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HP 81 (153)
T COG5078 5 SALKRLLKELKKLQKDPPPGISAGPVDD---DNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHP 81 (153)
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEECCC---CcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCC
Confidence 3999999999999999999999999873 3999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408 86 NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 86 nv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
|||.+|+||+++|.+ +|+|++++.+||.+|+++|.+||.++|+|.+||++|++|+++|.++||+++++|+.
T Consensus 82 NV~~~G~vCLdIL~~--~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 82 NVDPSGNVCLDILKD--RWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CcCCCCCChhHHHhC--CCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 999999999999998 89999999999999999999999999999999999999999999999999999974
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-55 Score=304.98 Aligned_cols=146 Identities=39% Similarity=0.765 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (160)
Q Consensus 7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (160)
+.+||.+|+++|++++++|+++.+.. +|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+|||||
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~----dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPN 77 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVG----DNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPN 77 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCC----CceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCC
Confidence 46799999999999999999998766 89999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408 87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 87 v~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
|+..|+||+++|.. .|+|++++.+||.+|++||.+|++++|++.+++.+|+.|+++|++.||+|+++||.
T Consensus 78 I~~~G~IclDILk~--~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 78 IDSNGRICLDILKD--QWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred cCccccchHHhhhc--cCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999 79999999999999999999999999999999999999999999999999999985
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-53 Score=287.45 Aligned_cols=148 Identities=44% Similarity=0.830 Sum_probs=144.6
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (160)
|| +.|-|||++|+++|+++++.|++..|.+ +|++.|.+.|+||.+|||+||+|++.|+|+++||.+||.|+|.+
T Consensus 1 Ms--tpArrrLmrDfkrlqedpp~gisa~P~~----~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs 74 (152)
T KOG0419|consen 1 MS--TPARRRLMRDFKRLQEDPPAGISAAPVE----NNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVS 74 (152)
T ss_pred CC--chHHHHHHHHHHHhhcCCCCCccCCCCc----cceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeee
Confidence 78 8899999999999999999999999998 89999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhc
Q 031408 81 GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156 (160)
Q Consensus 81 ~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~ 156 (160)
++||||||.+|.+|+++|.. .|+|.+++.+||.+||+||.+|++++|+|.+||++|++|+.+|.+++++.+.+.
T Consensus 75 ~mFHPNvya~G~iClDiLqN--rWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs 148 (152)
T KOG0419|consen 75 KMFHPNVYADGSICLDILQN--RWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQS 148 (152)
T ss_pred eccCCCcCCCCcchHHHHhc--CCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 99999999999999999999 899999999999999999999999999999999999999999999999988764
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=2.8e-51 Score=294.83 Aligned_cols=146 Identities=33% Similarity=0.717 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (160)
Q Consensus 7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (160)
+.|||++|+++|+++++.|+.+.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~----~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPN 78 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDP----GNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPN 78 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECC----CCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeece
Confidence 78999999999999999999998876 79999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408 87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 87 v~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
|+.+|.||+++|.. +|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|++.|.++||+|+++||.
T Consensus 79 V~~~G~iCl~iL~~--~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 79 IDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred ECCCCeEECccCcc--cCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 99999999999987 89999999999999999999999999999999999999999999999999999985
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=2.1e-50 Score=289.08 Aligned_cols=145 Identities=36% Similarity=0.744 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (160)
Q Consensus 7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (160)
|.+||++|+++|+++++.|+.+.+.+ +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++||||
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~----~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPN 77 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSD----ENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPN 77 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECC----CChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccce
Confidence 36999999999999999999998876 89999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 031408 87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 157 (160)
Q Consensus 87 v~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 157 (160)
|+.+|.||+++|.. +|+|++++++||.+|+++|.+|++++|+|.+||++|.+|+++|.++||+|+++||
T Consensus 78 v~~~G~iCl~il~~--~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 78 INSNGSICLDILRD--QWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred ECCCCEEEcccCcC--CCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 99999999999987 8999999999999999999999999999999999999999999999999999997
No 6
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-50 Score=276.76 Aligned_cols=156 Identities=68% Similarity=1.225 Sum_probs=151.7
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeec
Q 031408 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP 79 (160)
Q Consensus 1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 79 (160)
|| +.++.||+.|-+.+.++.+.|+++.|..+ |+..|++.|+|.|.|+.||+||||.|.+++.||++||.+||+++|.
T Consensus 1 ~s--~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~ 78 (158)
T KOG0424|consen 1 MS--GIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFK 78 (158)
T ss_pred Cc--chHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccC
Confidence 77 78899999999999999999999999988 6689999999999999999999999999999999999999999999
Q ss_pred cCcccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408 80 QGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 80 t~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
+++||||||++|.|||++|.++.+|+|+.||.+||..||+||.+||+.+|+|.||...|.+|+.+|.++||.++++|++
T Consensus 79 ~pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 79 PPLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred CCCcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999997679999999999999999999999999999999999999999999999999999986
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-49 Score=275.04 Aligned_cols=153 Identities=34% Similarity=0.668 Sum_probs=143.0
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (160)
|++++ +..-|+++|++|++++..|+++...++ .|+++|.|.|+||++|+|+||.|+..+.||.+||.+||+++|++
T Consensus 1 m~~~~-a~~ll~~qlk~L~~~pv~gf~~glvd~---~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s 76 (171)
T KOG0425|consen 1 MTSSQ-ASLLLLKQLKELQEEPVEGFSVGLVDD---SDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTS 76 (171)
T ss_pred Cccch-hHHHHHHHHHHHhcCCCCccccccccC---CceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeeh
Confidence 45434 788999999999999999999876553 79999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCceeecCCCC-----------CCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHH
Q 031408 81 GFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRV 149 (160)
Q Consensus 81 ~i~Hpnv~~~G~icl~~l~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~ 149 (160)
++||||||++|++|+++|.. .|.|.|.+|+++||++|.++|.+||.++|+|.|||+.|++|+++|.+++
T Consensus 77 ~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV 156 (171)
T KOG0425|consen 77 KMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKV 156 (171)
T ss_pred hhcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHH
Confidence 99999999999999999986 2689999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 031408 150 RQQAKQYP 157 (160)
Q Consensus 150 r~~~~~~~ 157 (160)
+++|++..
T Consensus 157 ~r~vr~s~ 164 (171)
T KOG0425|consen 157 RRCVRRSQ 164 (171)
T ss_pred HHHHHHHH
Confidence 99998754
No 8
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-46 Score=256.04 Aligned_cols=151 Identities=38% Similarity=0.764 Sum_probs=145.3
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (160)
|+ +.|+|||++||++|..+++.||.+.|..+ +|.+.|.+.|.||++|+|+||.|..++.||.+||.+||+++|..
T Consensus 1 m~--~~AlkRLm~EykqLt~~~P~GIvAgP~~E---dnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc 75 (165)
T KOG0426|consen 1 MA--GTALKRLMAEYKQLTLNPPEGIVAGPINE---DNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTC 75 (165)
T ss_pred Cc--hhHHHHHHHHHHHHccCCCCcceeCCCCc---cceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeec
Confidence 67 88999999999999999999999999875 89999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCceeecCCCC-----------CCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHH
Q 031408 81 GFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRV 149 (160)
Q Consensus 81 ~i~Hpnv~~~G~icl~~l~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~ 149 (160)
.+|||||+.+|++|+++|.. .|.|+|.++++.||.++.++|.+||.++.+|.+|+.++++|+++|.+.|
T Consensus 76 ~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~ 155 (165)
T KOG0426|consen 76 EMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIA 155 (165)
T ss_pred ccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHH
Confidence 99999999999999999975 2789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 031408 150 RQQAKQY 156 (160)
Q Consensus 150 r~~~~~~ 156 (160)
|..++|.
T Consensus 156 ~~lvrKt 162 (165)
T KOG0426|consen 156 KRLVRKT 162 (165)
T ss_pred HHHHHHh
Confidence 9999875
No 9
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-45 Score=264.65 Aligned_cols=149 Identities=31% Similarity=0.582 Sum_probs=143.7
Q ss_pred CCCchHHHHHHHHHHHHHHHcC---CCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeee
Q 031408 1 MSGGGIARGRLTEERKAWRKNH---PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK 77 (160)
Q Consensus 1 ms~~~~~~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~ 77 (160)
|| . +.+||++|++++.+++ ..||.++... +|+.+..+.|.||+|||||||+|.+.|++|++|||+||+|+
T Consensus 1 m~--~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn----~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~ 73 (200)
T KOG0418|consen 1 MS--N-AFKRINREQKEVLDDPEISQAGIIVEMVN----ENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVK 73 (200)
T ss_pred Cc--c-HHHHHHHHHHHhccChhhhhcceEEEEcc----CChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCcee
Confidence 67 6 8999999999999988 6899998877 89999999999999999999999999999999999999999
Q ss_pred eccCccccccc-CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhc
Q 031408 78 FPQGFFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156 (160)
Q Consensus 78 f~t~i~Hpnv~-~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~ 156 (160)
|.|+||||||+ .+|.||+++|.. .|.+++|+.++|++||++|..|++.+|.+...|++|.+|++.|.+.||.|+..|
T Consensus 74 F~TkIwHPnVSs~tGaICLDilkd--~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~f 151 (200)
T KOG0418|consen 74 FITKIWHPNVSSQTGAICLDILKD--QWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEF 151 (200)
T ss_pred eeeeeecCCCCcccccchhhhhhc--ccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999 599999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 031408 157 PP 158 (160)
Q Consensus 157 ~~ 158 (160)
|+
T Consensus 152 A~ 153 (200)
T KOG0418|consen 152 AG 153 (200)
T ss_pred hC
Confidence 85
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1.1e-44 Score=258.00 Aligned_cols=140 Identities=41% Similarity=0.817 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccccccC
Q 031408 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP 89 (160)
Q Consensus 10 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~ 89 (160)
||++|+++++++++.|+.+.+..+ +|+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|++|||||+.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~---~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~ 77 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSED---DNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDE 77 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEEST---TETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-T
T ss_pred CHHHHHHHHhhCCCCCEEEEECCC---CChheEEEEEeccCccceecccccccccccccccccccccccccccccccccc
Confidence 899999999999999999998772 49999999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHH
Q 031408 90 SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQA 153 (160)
Q Consensus 90 ~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~ 153 (160)
+|+||+++|..+ .|+|++++.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|.
T Consensus 78 ~G~icl~~l~~~-~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 78 NGRICLDILNPE-SWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp TSBBGHGGGTTT-TC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred cccchhhhhhcc-cCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999999862 599999999999999999999999999999999999999999999999984
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=2.3e-44 Score=256.61 Aligned_cols=140 Identities=41% Similarity=0.835 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccccc
Q 031408 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 88 (160)
Q Consensus 9 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 88 (160)
|||++|+++++++++.|+++.+.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.++++||||+
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~----~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~ 77 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVE----ENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD 77 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECC----CChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC
Confidence 799999999999999999999876 7999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHH
Q 031408 89 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQA 153 (160)
Q Consensus 89 ~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~ 153 (160)
.+|.||+++|... .|+|++++.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|+
T Consensus 78 ~~G~icl~~l~~~-~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 78 ENGKICLSILKTH-GWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCCCCchhhcCCC-CcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 9999999999882 399999999999999999999999999999999999999999999999874
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=2e-43 Score=252.86 Aligned_cols=144 Identities=44% Similarity=0.801 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccccc
Q 031408 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 88 (160)
Q Consensus 9 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 88 (160)
+||++|+++++++++.|+.+.+..+ +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.++++||||+
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~---~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~ 77 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDE---DNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD 77 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCC---CChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC
Confidence 5999999999999999999888762 4999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeecCCC-CCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 031408 89 PSGTVCLSILN-EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 157 (160)
Q Consensus 89 ~~G~icl~~l~-~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 157 (160)
++|.||+++|. . +|+|++++.+||.+|+++|.+|+.++|+|.+|+++|.+|++.|.++||+++.+++
T Consensus 78 ~~G~icl~~l~~~--~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 78 SSGEICLDILKQE--KWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CCCCEehhhcCCC--CCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999999998 5 8999999999999999999999999999999999999999999999999999975
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-42 Score=238.17 Aligned_cols=144 Identities=37% Similarity=0.627 Sum_probs=137.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (160)
....|||++|+..|+....+||++.|.. +|++.|.++|.||++|+|+|-.|++.+.||.+||+.||+|+|+|+.||
T Consensus 28 ~~V~KRLq~ELm~Lmms~~~gISAFP~~----dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~H 103 (175)
T KOG0421|consen 28 HSVTKRLQSELMGLMMSNTPGISAFPES----DNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFH 103 (175)
T ss_pred chHHHHHHHHHHHHHhcCCCCcccCcCc----CceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccC
Confidence 4578999999999999999999999877 899999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHh
Q 031408 85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 155 (160)
Q Consensus 85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~ 155 (160)
||||..|.||+++|.+ .|+..+.+++||.+||+||-+||.++|+|..||+++. |.++|.+.+.+.-.+
T Consensus 104 PNVD~~GnIcLDILkd--KWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 104 PNVDLSGNICLDILKD--KWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred CCccccccchHHHHHH--HHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 9999999999999999 8999999999999999999999999999999999998 899999998776544
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-41 Score=230.19 Aligned_cols=147 Identities=31% Similarity=0.613 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (160)
Q Consensus 7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (160)
|.+||++|+.+|+++....+.-.. .++.|++.|++.|. |++-||..|.|++.|.||.+|||+||+|.|.|+|||||
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~---~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpN 78 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIE---VDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPN 78 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhh---cccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCC
Confidence 799999999999998876544222 23489999999999 89999999999999999999999999999999999999
Q ss_pred ccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408 87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 87 v~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
||+.|.+|+.++.. |+|.|++...+||++|..++.+|+++.|++.|+|..|.+|+..|.++|.++++||+.
T Consensus 79 VDe~gqvClPiis~-EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 79 VDEKGQVCLPIISA-ENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred CCCCCceeeeeeec-ccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 99999999999988 499999999999999999999999999999999999999999999999999999984
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-38 Score=224.17 Aligned_cols=144 Identities=26% Similarity=0.572 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (160)
Q Consensus 7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (160)
.-|||..|...|... +..+.... +++.+++|.+.||.+|||+||++++++.+|++||++.|.|.|+++|||||
T Consensus 4 ~~rRid~Dv~KL~~s---~yeV~~in----d~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPN 76 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMS---DYEVTIIN----DGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPN 76 (189)
T ss_pred cccchhhHHHHHHhc---CCeEEEec----CcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCC
Confidence 468999999888654 34454444 67999999999999999999999999999999999999999999999999
Q ss_pred ccC-CCceeecCCCCCCCCCCcCCHHHHHH-HHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031408 87 VYP-SGTVCLSILNEDNGWRPAITVKQILV-GIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 159 (160)
Q Consensus 87 v~~-~G~icl~~l~~~~~W~p~~~i~~vl~-~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~ 159 (160)
|+. +|.||++.+.. .|+|.+.+..|+. -|-.||..||+.+|+|.+||.+|..++++|.+++|++++|||.|
T Consensus 77 IDe~SGsVCLDViNQ--tWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 77 IDEASGSVCLDVINQ--TWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred chhccCccHHHHHhh--hhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 995 99999999999 9999999999997 56788899999999999999999999999999999999999975
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-37 Score=218.44 Aligned_cols=147 Identities=29% Similarity=0.548 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEe-ecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 031408 5 GIARGRLTEERKAWRKNHPHGFVAK-PETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF 83 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 83 (160)
+.++-||++|+.++ +.+++++.. +...++ .+....+++|. |+++.|.||.|.|.+.+|+.||++||+|.++|++|
T Consensus 27 s~a~lrl~~di~el--nLp~t~~~s~~~~~~d-~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~ 102 (184)
T KOG0420|consen 27 SAALLRLKKDILEL--NLPPTCSLSFPDSPDD-LNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVY 102 (184)
T ss_pred cHHHHHHHhhhhhc--cCCCccccccccCCcc-cccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccc
Confidence 46788888888877 445555532 221122 22225999998 99999999999999999999999999999999999
Q ss_pred cccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 031408 84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 157 (160)
Q Consensus 84 Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 157 (160)
|||||.+|.||+++|++ +|+|..++.+|+.+|+.||.+|++++|+|.+||..+++|++.|+.+||+.-..++
T Consensus 103 HPNId~~GnVCLnILRe--dW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~ 174 (184)
T KOG0420|consen 103 HPNIDLDGNVCLNILRE--DWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC 174 (184)
T ss_pred cCCcCCcchHHHHHHHh--cCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence 99999999999999999 8999999999999999999999999999999999999999999999999887665
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-36 Score=216.28 Aligned_cols=147 Identities=28% Similarity=0.559 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (160)
Q Consensus 7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (160)
.+|.|.+|++.|...||.||.+.+-+ .|++...+.|.||.||||++|.|+.++.+..+||.+||+-+|+|+|||||
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~Ne----eD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPN 86 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVNE----EDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPN 86 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecCh----HHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCC
Confidence 57899999999999999999988755 78899999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031408 87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 159 (160)
Q Consensus 87 v~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~ 159 (160)
|-.+|.||.+.|.. +|+|...|.+||..|+++|..|++++.+|.+|..++.+|.++|.++||-++.-+++|
T Consensus 87 VaaNGEICVNtLKk--DW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 87 VAANGEICVNTLKK--DWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred cccCceehhhhhhc--ccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 99999999999999 899999999999999999999999999999999999999999999999999988875
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-31 Score=181.63 Aligned_cols=122 Identities=33% Similarity=0.684 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccC-cc
Q 031408 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG-FF 83 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~-i~ 83 (160)
.+|.+||++|+.+++.++|.|+.... . +|+..|.+.+.|.+||.|+|.+|.+.++||+.||++.|.|.|+.+ ..
T Consensus 14 ~~at~RLqKEl~e~q~~pP~G~~~~v-~----dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~ 88 (161)
T KOG0427|consen 14 KIATNRLQKELSEWQNNPPTGFKHRV-T----DNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPL 88 (161)
T ss_pred HHHHHHHHHHHHHHhcCCCCcceeec-c----cchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCC
Confidence 67899999999999999999998763 3 799999999999999999999999999999999999999999976 58
Q ss_pred cccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcC-CCCCCccCHH
Q 031408 84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ-PNPADPAQTD 133 (160)
Q Consensus 84 Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~-p~~~~p~n~~ 133 (160)
||+||.+|.||+++|.+ .|+|++++.+|.++|.++|.. ..-..|.+.+
T Consensus 89 HPHiYSNGHICL~iL~d--~WsPAmsv~SvClSIlSMLSSs~eKqrP~Dn~ 137 (161)
T KOG0427|consen 89 HPHIYSNGHICLDILYD--SWSPAMSVQSVCLSILSMLSSSKEKQRPTDND 137 (161)
T ss_pred CCceecCCeEEEEeecc--cCCcchhhHHHHHHHHHHHccCccccCCCccc
Confidence 99999999999999999 899999999999999999954 4444555443
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-30 Score=191.21 Aligned_cols=117 Identities=32% Similarity=0.602 Sum_probs=106.2
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (160)
|+. ..|.|||++||+.|+++|.+++.+.|.. +|+.+||.++.||+||||+||.|+.+|.||++||++||.|++.|
T Consensus 1 ma~-k~a~kRl~keY~~l~k~Pv~~i~A~P~p----~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT 75 (244)
T KOG0894|consen 1 MAS-KAAVKRLQKEYRALCKDPVPYIVARPNP----NNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT 75 (244)
T ss_pred Ccc-hHHHHHHHHHHHHHHhCCchhhccCCCc----cceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC
Confidence 443 6799999999999999999999999988 89999999999999999999999999999999999999999998
Q ss_pred C--cccccccCCCceeecCCCC-CCCCCCcCCHHHHHHHHHHhhcCCCC
Q 031408 81 G--FFHPNVYPSGTVCLSILNE-DNGWRPAITVKQILVGIQDLLDQPNP 126 (160)
Q Consensus 81 ~--i~Hpnv~~~G~icl~~l~~-~~~W~p~~~i~~vl~~i~~ll~~p~~ 126 (160)
+ +|.+| -++|+++-.. .+.|+|+++|++||.+|.++|.+-.+
T Consensus 76 PNGRFktn----tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~p 120 (244)
T KOG0894|consen 76 PNGRFKTN----TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSP 120 (244)
T ss_pred CCCceecC----ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence 5 67776 7999998865 45899999999999999999966443
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.2e-26 Score=169.52 Aligned_cols=144 Identities=23% Similarity=0.392 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCC--CCCeeeeccCcccc
Q 031408 8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPS--KPPKCKFPQGFFHP 85 (160)
Q Consensus 8 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~Hp 85 (160)
.--|+.|+..+.+.+-+||++.|+- .+-+.|-++|++ ..+.|.||+|+|+|.+|++||. +.|+|.|.+.+|||
T Consensus 21 ey~llAEf~lV~~ekL~gIyviPSy----an~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP 95 (258)
T KOG0429|consen 21 EYALLAEFVLVCREKLDGIYVIPSY----ANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHP 95 (258)
T ss_pred HHHHHHHHHHHHhccCCceEEcccc----cccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeecccccc
Confidence 3567889999999999999999998 899999999995 5677999999999999999995 58999999999999
Q ss_pred cccC-CCceeecCCCCCCCCCCc-CCHHHHHHHHHHhhcCCCCCCc-c-CHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408 86 NVYP-SGTVCLSILNEDNGWRPA-ITVKQILVGIQDLLDQPNPADP-A-QTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 86 nv~~-~G~icl~~l~~~~~W~p~-~~i~~vl~~i~~ll~~p~~~~p-~-n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
+|.+ ++.+|++-... .|... .++++||..||.+|++|+.+.+ + |++|+.+|++++++|.++|++++....+
T Consensus 96 ~icp~skeLdl~raf~--eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~ 170 (258)
T KOG0429|consen 96 LICPKSKELDLNRAFP--EWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASRS 170 (258)
T ss_pred ccCCCccceeHhhhhh--hhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9995 89999988887 69777 5999999999999999998876 4 9999999999999999999999987543
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.7e-24 Score=158.71 Aligned_cols=112 Identities=28% Similarity=0.550 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccC--c
Q 031408 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--F 82 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i 82 (160)
+.+.|||++|.++|+ +|-..+.+.|++ +|+++|+++|.||.||-|+||+|+.+|.||.+||++||.+..+|+ +
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plE----dNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGR 84 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLE----DNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGR 84 (314)
T ss_pred CHHHHHHHHHHHHhc-Cchhhhhhccch----hceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCc
Confidence 578999999999997 888888899998 899999999999999999999999999999999999999998875 3
Q ss_pred ccccccCCCceeecCCCC-CCCCCCcCCHHHHHHHHHHhh-cCCC
Q 031408 83 FHPNVYPSGTVCLSILNE-DNGWRPAITVKQILVGIQDLL-DQPN 125 (160)
Q Consensus 83 ~Hpnv~~~G~icl~~l~~-~~~W~p~~~i~~vl~~i~~ll-~~p~ 125 (160)
|-- +.+||+++-.. .|.|.|+++|...|.+|..+| ..|+
T Consensus 85 FE~----nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 85 FEV----NKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred eee----CceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 333 47899999876 579999999999999999998 3444
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.4e-18 Score=150.12 Aligned_cols=115 Identities=31% Similarity=0.613 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc--Cccccc
Q 031408 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ--GFFHPN 86 (160)
Q Consensus 9 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t--~i~Hpn 86 (160)
+..+.|++-|..+.+.|+.+...+ +.+....+.|.|+++|||++|+|.|.|.||++||.+||.|..-+ -+++||
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e----~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npn 929 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYE----DRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPN 929 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEech----HHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcc
Confidence 445567788888899999998776 77778899999999999999999999999999999999999976 479999
Q ss_pred ccCCCceeecCCCC-----CCCCCCcCCHHHHHHHHHHhhcC--CCCC
Q 031408 87 VYPSGTVCLSILNE-----DNGWRPAITVKQILVGIQDLLDQ--PNPA 127 (160)
Q Consensus 87 v~~~G~icl~~l~~-----~~~W~p~~~i~~vl~~i~~ll~~--p~~~ 127 (160)
.|.+|++|+++|+. .|.|+|+.++.+||.+||.|+.+ |.+.
T Consensus 930 ly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~n 977 (1101)
T KOG0895|consen 930 LYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFN 977 (1101)
T ss_pred cccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccC
Confidence 99999999999987 36899999999999999999843 4443
No 23
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.4e-16 Score=108.31 Aligned_cols=117 Identities=22% Similarity=0.296 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 031408 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP 85 (160)
Q Consensus 6 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 85 (160)
.+.-||.+|+.+-++...++.....++++++-.+..|..+|.||+.|+||+.+|.++|.+.++||..||+|+|.+++--+
T Consensus 5 Prnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~ 84 (138)
T KOG0896|consen 5 PRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMN 84 (138)
T ss_pred ccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeec
Confidence 34568999999888887888877777766666778999999999999999999999999999999999999999999999
Q ss_pred ccc-CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhc
Q 031408 86 NVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122 (160)
Q Consensus 86 nv~-~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~ 122 (160)
.|+ .+|.+.-..+.--++|.-.+++..+|..++.++.
T Consensus 85 gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 85 GVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred ccccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 998 4777776554433479999999999999997663
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5.9e-16 Score=135.42 Aligned_cols=114 Identities=31% Similarity=0.637 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccC---c
Q 031408 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG---F 82 (160)
Q Consensus 6 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i 82 (160)
...+|+++|++-+.++.+.|+.+.+.. ..+...++.|.|+.||||++|+|.|.|.||..||..||.+.+.+. +
T Consensus 282 ~~skrv~ke~~llskdlpEgifvrp~e----~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R 357 (1101)
T KOG0895|consen 282 NWSKKVAKELKLLSKDLPEGIFVRPDE----GRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVR 357 (1101)
T ss_pred hhHHHHHHHhhhhcccCCCCccccccc----cccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeecccee
Confidence 467999999999999999999999887 889999999999999999999999999999999999999999875 8
Q ss_pred ccccccCCCceeecCCCC-----CCCCCCc-CCHHHHHHHHHHhhcC
Q 031408 83 FHPNVYPSGTVCLSILNE-----DNGWRPA-ITVKQILVGIQDLLDQ 123 (160)
Q Consensus 83 ~Hpnv~~~G~icl~~l~~-----~~~W~p~-~~i~~vl~~i~~ll~~ 123 (160)
+.||.|.+|+||+++|.. .+.|+|. .++.++|..||.++.+
T Consensus 358 ~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~ 404 (1101)
T KOG0895|consen 358 LNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILN 404 (1101)
T ss_pred ecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcc
Confidence 999999999999999976 2579999 7999999999999954
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.7e-08 Score=66.89 Aligned_cols=93 Identities=22% Similarity=0.444 Sum_probs=67.0
Q ss_pred EEEEEEeCCCCCCCCCeeeeccCccccc-ccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCC--CCCccCHHHH
Q 031408 59 FPLTLYFSEDYPSKPPKCKFPQGFFHPN-VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN--PADPAQTDGY 135 (160)
Q Consensus 59 f~~~i~fp~~YP~~pP~v~f~t~i~Hpn-v~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~--~~~p~n~~a~ 135 (160)
.-+.+.|+++||+.||.++...++-.-. |-.+|.||+.+|..+ +|+.+++|+.++++|...+..-. ...+++.+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~q-gwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQ-GWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccc-cccchhhHHHHHHHHHHHhhccceeEecCcchhhh
Confidence 4467889999999999998775543322 235899999999985 89999999999999999996543 4556655533
Q ss_pred HHHhh--CHHHHHHHHHHHH
Q 031408 136 QLFIQ--DPAEYKRRVRQQA 153 (160)
Q Consensus 136 ~~~~~--~~~~f~~~~r~~~ 153 (160)
+|.. --+.|...++-+.
T Consensus 92 -~~s~~qa~~sfksLv~~he 110 (122)
T KOG0897|consen 92 -LYSHSQAQQSFKSLVQIHE 110 (122)
T ss_pred -HhhHHHHHHHHHHHHHHHH
Confidence 4433 3455666555443
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.73 E-value=5.3e-08 Score=68.61 Aligned_cols=66 Identities=32% Similarity=0.669 Sum_probs=59.2
Q ss_pred CCCEEEEEEEeCCCCCCCCCeeeeccCc---ccccccCCCceee---cCCCCCCCCCCcCCHHHHHHHHHHhhc
Q 031408 55 EGGYFPLTLYFSEDYPSKPPKCKFPQGF---FHPNVYPSGTVCL---SILNEDNGWRPAITVKQILVGIQDLLD 122 (160)
Q Consensus 55 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~Hpnv~~~G~icl---~~l~~~~~W~p~~~i~~vl~~i~~ll~ 122 (160)
.|+.+.+.|.+|++||..||.|....+. +-|||+.+|.+|+ +..-. .|.|...+..+|..+..+|.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D--~~~P~~~~~~~l~~a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLD--PWDPEGIIADCLERAIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccC--ccCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988643 7899999999999 55555 89999999999999999996
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.48 E-value=7.4e-07 Score=61.82 Aligned_cols=79 Identities=22% Similarity=0.440 Sum_probs=55.3
Q ss_pred CCcceEEEEEcCCCCCCCCCCEEE--EEEEeCCCCCCCCCeeeeccCc-----ccccccCCCceeecCCCCCCCCCC-cC
Q 031408 37 VNLMIWECIIPGKTGTDWEGGYFP--LTLYFSEDYPSKPPKCKFPQGF-----FHPNVYPSGTVCLSILNEDNGWRP-AI 108 (160)
Q Consensus 37 ~~~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~i-----~Hpnv~~~G~icl~~l~~~~~W~p-~~ 108 (160)
..+....++|.- .|+|.+|. +.|.+|.+||.+||.+...... -+.+||.+|+|.+..|.. |++ ..
T Consensus 30 ~~LL~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~---W~~~~s 102 (121)
T PF05743_consen 30 KLLLCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQN---WNPPSS 102 (121)
T ss_dssp EEEEEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHHT-----TTTS
T ss_pred heEEEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhcc---CCCCCC
Confidence 345556666642 48888875 6778899999999999886432 244999999999999877 888 67
Q ss_pred CHHHHHHHHHHhhc
Q 031408 109 TVKQILVGIQDLLD 122 (160)
Q Consensus 109 ~i~~vl~~i~~ll~ 122 (160)
++.+++..+...|.
T Consensus 103 ~L~~lv~~l~~~F~ 116 (121)
T PF05743_consen 103 NLVDLVQELQAVFS 116 (121)
T ss_dssp -HHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998884
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.25 E-value=5e-07 Score=63.15 Aligned_cols=97 Identities=27% Similarity=0.453 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCE----------EEEEEEeCCCCCCCCCee
Q 031408 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY----------FPLTLYFSEDYPSKPPKC 76 (160)
Q Consensus 7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~----------f~~~i~fp~~YP~~pP~v 76 (160)
=..||+.||..|-+.. ....+.++|++.... -++||-|.|.| |.+.+.+|..||..||.+
T Consensus 25 W~~RLKEEy~aLI~Yv-------~~nK~~DndWF~les---n~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi 94 (161)
T PF08694_consen 25 WVQRLKEEYQALIKYV-------ENNKENDNDWFRLES---NKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEI 94 (161)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHTT---EEEEE----TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----
T ss_pred HHHHHHHHHHHHHHHH-------HhcccccCCeEEecc---CCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcce
Confidence 4689999999984420 000011134443331 25566666644 556666799999999999
Q ss_pred eecc-CcccccccCCCceeecCCCCCCCC---CCcCCHHHHH
Q 031408 77 KFPQ-GFFHPNVYPSGTVCLSILNEDNGW---RPAITVKQIL 114 (160)
Q Consensus 77 ~f~t-~i~Hpnv~~~G~icl~~l~~~~~W---~p~~~i~~vl 114 (160)
.... .--....|..|+||++.-... -| .|.++|.+.|
T Consensus 95 ~lPeLdGKTaKMYRGGkIClt~HFkP-LWakN~PkfGIaHal 135 (161)
T PF08694_consen 95 ALPELDGKTAKMYRGGKICLTDHFKP-LWAKNVPKFGIAHAL 135 (161)
T ss_dssp B-GGGTTT-SSBCCCCBB---TTHHH-HHHCTTTT--HHHHH
T ss_pred eccccCCchhhhhcCceEeeecccch-hhhhcCCchhHHHHH
Confidence 8753 223455667899999876542 35 4556776654
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=7.6e-05 Score=59.40 Aligned_cols=85 Identities=22% Similarity=0.479 Sum_probs=65.2
Q ss_pred CCCCCcceEEEEEcCCCCCCCCCCEEE--EEEEeCCCCCCCCCeeeeccC-----cccccccCCCceeecCCCCCCCCCC
Q 031408 34 DGSVNLMIWECIIPGKTGTDWEGGYFP--LTLYFSEDYPSKPPKCKFPQG-----FFHPNVYPSGTVCLSILNEDNGWRP 106 (160)
Q Consensus 34 ~~~~~~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~-----i~Hpnv~~~G~icl~~l~~~~~W~p 106 (160)
+...+++...++|. .+|.|.+|. +.|.+.+.||..||.|..... --|-+||.+|+|.+..|.. |.+
T Consensus 47 g~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh~---W~~ 119 (365)
T KOG2391|consen 47 GRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLHN---WDP 119 (365)
T ss_pred CCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhcc---CCC
Confidence 34456666666654 468887776 667789999999999977531 1389999999999999987 865
Q ss_pred c-CCHHHHHHHHHHhhcCCC
Q 031408 107 A-ITVKQILVGIQDLLDQPN 125 (160)
Q Consensus 107 ~-~~i~~vl~~i~~ll~~p~ 125 (160)
. ..+..++..|-+.|.++.
T Consensus 120 pssdLv~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 120 PSSDLVGLIQELIAAFSEDP 139 (365)
T ss_pred ccchHHHHHHHHHHHhcCCC
Confidence 5 688888888888886644
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.00012 Score=50.60 Aligned_cols=96 Identities=22% Similarity=0.387 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCE----------EEEEEEeCCCCCCCCCee
Q 031408 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY----------FPLTLYFSEDYPSKPPKC 76 (160)
Q Consensus 7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~----------f~~~i~fp~~YP~~pP~v 76 (160)
=.+||+.||+.|..... ...+.++|++... .-++||-|-|.+ |.+.+.+|-.||..+|.+
T Consensus 28 wvqrlkeey~sli~yvq-------nnk~~d~dwfrle---sn~egtrwfgkcwy~hnllkyefdvefdipityp~tapei 97 (167)
T KOG3357|consen 28 WVQRLKEEYQSLIAYVQ-------NNKSNDNDWFRLE---SNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEI 97 (167)
T ss_pred HHHHHHHHHHHHHHHHH-------hCcccCCcceEec---cCccccceehhhhHhhhhhhheeeeeeccccccCCCCccc
Confidence 46899999998844211 1112224554333 347888888865 455566699999999998
Q ss_pred eecc-CcccccccCCCceeecCCCCCCCCCCc---CCHHHH
Q 031408 77 KFPQ-GFFHPNVYPSGTVCLSILNEDNGWRPA---ITVKQI 113 (160)
Q Consensus 77 ~f~t-~i~Hpnv~~~G~icl~~l~~~~~W~p~---~~i~~v 113 (160)
.... .--....|..|+||+.--... -|... .++.+.
T Consensus 98 alpeldgktakmyrggkiclt~hfkp-lwarn~pkfgiaha 137 (167)
T KOG3357|consen 98 ALPELDGKTAKMYRGGKICLTDHFKP-LWARNVPKFGIAHA 137 (167)
T ss_pred cccccCchhhhhhcCceEeeccccch-hhhhcCcchhHHHH
Confidence 7642 112234456799999766553 57444 444443
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.47 E-value=0.026 Score=37.69 Aligned_cols=69 Identities=19% Similarity=0.175 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcC--CCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccC
Q 031408 8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPG--KTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG 81 (160)
Q Consensus 8 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (160)
..+...|+..|+.--+... .. ....+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|.+...
T Consensus 3 ~e~~~~EieaL~sIy~~~~-~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDF-IE----IESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSE-SS----STSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCc-cc----cccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 3467788988877555444 11 111444556666632 233334456899999999999999999987654
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.17 E-value=0.094 Score=34.62 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=21.8
Q ss_pred CCEEEEEEEeCCCCCCCCCeeeeccC
Q 031408 56 GGYFPLTLYFSEDYPSKPPKCKFPQG 81 (160)
Q Consensus 56 gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (160)
.-.+.+.+.||++||..+|.+.+...
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 35588999999999999999987653
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.97 E-value=0.1 Score=36.09 Aligned_cols=81 Identities=19% Similarity=0.344 Sum_probs=49.9
Q ss_pred ceEEEEEcC--CCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc-------cccccC-----CCceeecCCCCCCCCC
Q 031408 40 MIWECIIPG--KTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF-------HPNVYP-----SGTVCLSILNEDNGWR 105 (160)
Q Consensus 40 ~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~-------Hpnv~~-----~G~icl~~l~~~~~W~ 105 (160)
..|.+ |.| -+.+.|.+..-.+.|.+|+.||..+|-+.+..+.. .|+-.. .|+.--..-.-...|+
T Consensus 24 ~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~ 102 (122)
T PF14462_consen 24 RRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRTWQRWSRHNNPWR 102 (122)
T ss_pred ccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCeeeeeecCCCCCCC
Confidence 44544 555 56677999999999999999999887655543322 121100 1221000000012699
Q ss_pred CcC-CHHHHHHHHHHhh
Q 031408 106 PAI-TVKQILVGIQDLL 121 (160)
Q Consensus 106 p~~-~i~~vl~~i~~ll 121 (160)
|+. +|.+.|..|...|
T Consensus 103 P~~D~l~T~l~~v~~~L 119 (122)
T PF14462_consen 103 PGVDDLWTHLARVEHAL 119 (122)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 987 8999988888766
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.24 E-value=0.28 Score=35.71 Aligned_cols=62 Identities=24% Similarity=0.380 Sum_probs=48.4
Q ss_pred EEEEEeCCCCCCCCCeeeeccCcc---cccccCC-----CceeecCCCCCCCCCCcCCHHHHHHHHHHhhc
Q 031408 60 PLTLYFSEDYPSKPPKCKFPQGFF---HPNVYPS-----GTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122 (160)
Q Consensus 60 ~~~i~fp~~YP~~pP~v~f~t~i~---Hpnv~~~-----G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~ 122 (160)
.+.|.|+.+||..+|.|.++-+.| +||+... ..+|+---.-. .|.+..++..+|..|..-|.
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~-e~~~~~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWS-EWRPSWGPEGFLDRLFDWLR 125 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHH-HhhhccCHHHHHHHHHHHHH
Confidence 367899999999999877765433 5777754 67998654443 69999999999999998883
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=91.81 E-value=0.4 Score=38.20 Aligned_cols=85 Identities=20% Similarity=0.284 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccccc
Q 031408 8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV 87 (160)
Q Consensus 8 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv 87 (160)
.++|.+|+.++..+....+.. + +++...++.+. |+ .....++|.++.+||.++|.+...-++ ...
T Consensus 101 ys~ll~EIe~IGW~kl~~i~~---d----~~ls~i~l~~~---D~---~R~H~l~l~l~~~yp~~~p~~~~~~P~-~~~- 165 (291)
T PF09765_consen 101 YSNLLKEIEAIGWDKLVQIQF---D----DDLSTIKLKIF---DS---SRQHYLELKLPSNYPFEPPSCSLDLPI-PFS- 165 (291)
T ss_dssp C-CHHHHHHHHHCGCCEEEEE--------CCCSEEEEEEE---TT---CEEEEEEEETTTTTTTSEEEECS-TTS--HH-
T ss_pred HHHHHHHHHHhccccceEEec---C----CCccEEEEEEE---cC---CceEEEEEEECCCCCCCCceeeCCCCc-chh-
Confidence 467888998887665433321 2 68888888887 22 257889999999999999987543322 111
Q ss_pred cCCCceeecCCCCCCCCCC-cCCHHHHHHHHHHhh
Q 031408 88 YPSGTVCLSILNEDNGWRP-AITVKQILVGIQDLL 121 (160)
Q Consensus 88 ~~~G~icl~~l~~~~~W~p-~~~i~~vl~~i~~ll 121 (160)
. .|.+ ..++.+++...+..+
T Consensus 166 ------------~--~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 166 ------------L--SWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp ------------H--HHHCHT-SHHHHHHHHHHHH
T ss_pred ------------h--hhcccccCHHHHHHHHHHHH
Confidence 1 5888 678888876666555
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=87.59 E-value=2.7 Score=31.87 Aligned_cols=63 Identities=27% Similarity=0.379 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHcCCCCe-EEeecCCCCCCCcceEEEEEcCCCCC--CCCCCEEEEEEEeCCCCCCCCCeeee
Q 031408 9 GRLTEERKAWRKNHPHGF-VAKPETKDGSVNLMIWECIIPGKTGT--DWEGGYFPLTLYFSEDYPSKPPKCKF 78 (160)
Q Consensus 9 ~Rl~~E~~~l~~~~~~~~-~~~~~~~~~~~~~~~w~~~i~Gp~~t--py~gg~f~~~i~fp~~YP~~pP~v~f 78 (160)
.-...|+..|....+.-. .+. +.+...+.++|.--.+. -+.| .+.+.+.++++||.++|.+.+
T Consensus 5 EeQe~E~EaLeSIY~de~~~i~------~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 5 EEQEEELEALESIYPDEFKHIN------SEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred HHHHHHHHHHHHhccchhhhhh------ccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence 334556666655433322 111 13333355666521111 1222 788999999999999999943
No 37
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=83.88 E-value=1.8 Score=31.74 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=26.7
Q ss_pred ccCccc---ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCc
Q 031408 79 PQGFFH---PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129 (160)
Q Consensus 79 ~t~i~H---pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p 129 (160)
.|++|| +||+.+|+||...... |......-+..+...|.+...+++
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~~-----P~~~~~~~i~~we~~Ff~S~ftH~ 137 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNSL-----PKISTLASIEAWEDAFFNSPFTHP 137 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCcC-----CCccCHHHHHHHHHHHhCCCccCC
Confidence 345666 5999999999977443 333333445555555433334343
No 38
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.23 E-value=7.3 Score=35.12 Aligned_cols=66 Identities=14% Similarity=0.124 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCE-EEEEEEeCCCCCCC-CCeeeecc
Q 031408 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY-FPLTLYFSEDYPSK-PPKCKFPQ 80 (160)
Q Consensus 9 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~-f~~~i~fp~~YP~~-pP~v~f~t 80 (160)
+-|.+|+..+-. .-..+.++..+ ..-..-.+++.||-.-. .|-+ .++.|.||-+||.. +|.++|..
T Consensus 423 QnLgeE~S~Ig~-k~~nV~fEkid----va~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~ 490 (1081)
T KOG0309|consen 423 QNLGEEFSLIGV-KIRNVNFEKID----VADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFEN 490 (1081)
T ss_pred hhHHhHHhHhhc-cccccceEeec----cccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEec
Confidence 556777776632 22344444332 22245566777654333 3333 47889999999995 79999864
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=69.24 E-value=18 Score=29.38 Aligned_cols=60 Identities=25% Similarity=0.558 Sum_probs=42.2
Q ss_pred CCCCCEEEEEEEeCCCCCCCCCeeeec-cCcccccccCCCceeecCCCCCCCCCCcC--CHHHHHHHHHHh
Q 031408 53 DWEGGYFPLTLYFSEDYPSKPPKCKFP-QGFFHPNVYPSGTVCLSILNEDNGWRPAI--TVKQILVGIQDL 120 (160)
Q Consensus 53 py~gg~f~~~i~fp~~YP~~pP~v~f~-t~i~Hpnv~~~G~icl~~l~~~~~W~p~~--~i~~vl~~i~~l 120 (160)
||.|...+-.|.|...||..||-+.|- ..-|+|-.. . +..|. +|++.- ++..++..+..+
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L~---~Wd~~dp~~Ll~li~EL~~~ 123 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSLV---NWDPSDPNCLLNLISELRQL 123 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchhh---cCCCCCchHHHHHHHHHHHH
Confidence 689999999999999999999999996 345888421 1 23332 597773 555555555433
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=68.49 E-value=10 Score=29.11 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=29.9
Q ss_pred cCccc---ccccCCCceeecCCCCCCCCCCc-CCHHHHHHHHHHhhcCCCCCCc
Q 031408 80 QGFFH---PNVYPSGTVCLSILNEDNGWRPA-ITVKQILVGIQDLLDQPNPADP 129 (160)
Q Consensus 80 t~i~H---pnv~~~G~icl~~l~~~~~W~p~-~~i~~vl~~i~~ll~~p~~~~p 129 (160)
|++|| +||+.+|+||+.... .|. .++.+ +....+.|.+-.++.+
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~-----~P~~~~~~~-i~~we~~FF~S~FTH~ 178 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR-----LPDRPTVAN-ISAWEDAFFSSRFTHP 178 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc-----CCCCcCHHH-HHHHHHHHhCCcccCC
Confidence 34566 488899999997543 334 36777 7788888866555544
No 41
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=64.62 E-value=19 Score=28.04 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=33.7
Q ss_pred CCcceEEEEEcCCCCCCCCCCE----EEEEEEeC-----CCCCCCCCeeeeccCcc
Q 031408 37 VNLMIWECIIPGKTGTDWEGGY----FPLTLYFS-----EDYPSKPPKCKFPQGFF 83 (160)
Q Consensus 37 ~~~~~w~~~i~Gp~~tpy~gg~----f~~~i~fp-----~~YP~~pP~v~f~t~i~ 83 (160)
.|..-|++..+ ..||.-..|+ |+.++++. .|-||+||+|..+++-|
T Consensus 100 KDp~PWkl~Yr-V~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 100 KDPIPWKLYYR-VEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCCeEEEEE-eecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 56667888888 5666665554 55666664 78999999999998754
No 42
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.82 E-value=28 Score=25.79 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCee
Q 031408 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKC 76 (160)
Q Consensus 4 ~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v 76 (160)
+....+||++|++.+.+.--..++..|.- +-...+.+.+.-.+|+ ..|.++-.+-|++
T Consensus 117 ~~k~~~~iq~EIraviRQItasVtfLP~L----e~~ctFdvLiyTdkD~-----------~vP~~W~eS~~~~ 174 (203)
T KOG3285|consen 117 RVKDLKRIQNEIRAVIRQITASVTFLPLL----EEICTFDVLIYTDKDT-----------EVPEKWDESGPKL 174 (203)
T ss_pred chhHHHHHHHHHHHHHHHHhhheeecccc----cceeEEEEEEEeCCCc-----------cCCcchhcCCCeE
Confidence 45678999999999999887788887776 4556666666543333 4566665555543
No 43
>smart00340 HALZ homeobox associated leucin zipper.
Probab=52.17 E-value=15 Score=20.45 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHc
Q 031408 7 ARGRLTEERKAWRKN 21 (160)
Q Consensus 7 ~~~Rl~~E~~~l~~~ 21 (160)
..+||++|+.+|...
T Consensus 20 eNrRL~ke~~eLral 34 (44)
T smart00340 20 ENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHhc
Confidence 468999999998653
No 44
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=47.88 E-value=27 Score=24.69 Aligned_cols=24 Identities=25% Similarity=0.621 Sum_probs=21.6
Q ss_pred CCEEEEEEEeCCCCC-CCCCeeeec
Q 031408 56 GGYFPLTLYFSEDYP-SKPPKCKFP 79 (160)
Q Consensus 56 gg~f~~~i~fp~~YP-~~pP~v~f~ 79 (160)
.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 488999999999999 999999885
No 45
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=47.49 E-value=26 Score=28.85 Aligned_cols=68 Identities=22% Similarity=0.447 Sum_probs=44.4
Q ss_pred CCcceEE--EEEcCCCCCCCCCCE-------EEEEEEeCCCCCCCCCeeeeccCcccccccCCCce-eecCCCCCCCCCC
Q 031408 37 VNLMIWE--CIIPGKTGTDWEGGY-------FPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTV-CLSILNEDNGWRP 106 (160)
Q Consensus 37 ~~~~~w~--~~i~Gp~~tpy~gg~-------f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~i-cl~~l~~~~~W~p 106 (160)
.++-.|+ +.++||||| |.+ -++.|...+.|+..-- + .| |.+++ . .|..
T Consensus 171 tnlIt~NRliLlhGPPGT---GKTSLCKaLaQkLSIR~~~~y~~~~l-i---------------EinshsLF-S--KWFs 228 (423)
T KOG0744|consen 171 TNLITWNRLILLHGPPGT---GKTSLCKALAQKLSIRTNDRYYKGQL-I---------------EINSHSLF-S--KWFS 228 (423)
T ss_pred CceeeeeeEEEEeCCCCC---ChhHHHHHHHHhheeeecCccccceE-E---------------EEehhHHH-H--HHHh
Confidence 5777786 677999999 644 5678888888864310 0 11 22222 2 4754
Q ss_pred cC--CHHHHHHHHHHhhcCCCC
Q 031408 107 AI--TVKQILVGIQDLLDQPNP 126 (160)
Q Consensus 107 ~~--~i~~vl~~i~~ll~~p~~ 126 (160)
.. -+..++..|+.++.+++.
T Consensus 229 ESgKlV~kmF~kI~ELv~d~~~ 250 (423)
T KOG0744|consen 229 ESGKLVAKMFQKIQELVEDRGN 250 (423)
T ss_pred hhhhHHHHHHHHHHHHHhCCCc
Confidence 43 688889999999988663
No 46
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=46.30 E-value=49 Score=20.99 Aligned_cols=32 Identities=16% Similarity=0.389 Sum_probs=28.0
Q ss_pred CCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 127 ~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
++|.+.+|-..|.+-.+...+..+++.++|.+
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~~yGP 55 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEKRYGP 55 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 57899999999999888888888888888875
No 47
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=45.01 E-value=81 Score=20.15 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 031408 40 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF 83 (160)
Q Consensus 40 ~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 83 (160)
..|.+-+.|+.+..-..-+=++.+.+.+.|+. |...+..+.|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 57999999877764445566788888888876 6666665543
No 48
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=40.98 E-value=38 Score=25.17 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.0
Q ss_pred CCCEEEEEEEeCCCCCCCCCeeeec
Q 031408 55 EGGYFPLTLYFSEDYPSKPPKCKFP 79 (160)
Q Consensus 55 ~gg~f~~~i~fp~~YP~~pP~v~f~ 79 (160)
+.|.|.|+=.+|--||.++|.|.|.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 3488999999999999999999885
No 49
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=39.74 E-value=1.1e+02 Score=23.31 Aligned_cols=72 Identities=24% Similarity=0.339 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCC----------------
Q 031408 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY---------------- 69 (160)
Q Consensus 6 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~Y---------------- 69 (160)
.+..||.+.++++++.. . +...-|.+.+....+.-| || |.+.++|.++=
T Consensus 9 s~~eR~~e~~~~~k~~L---------~----~a~~GW~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~t 73 (235)
T PF14135_consen 9 SPAERINEALAEYKKIL---------T----SAPNGWKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPST 73 (235)
T ss_pred CHHHHHHHHHHHHHHHH---------h----cCCCceEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceee
Confidence 36788888777775531 1 233447777763332224 44 77777775433
Q ss_pred ---CCC---CCeeeecc--CcccccccCCCc
Q 031408 70 ---PSK---PPKCKFPQ--GFFHPNVYPSGT 92 (160)
Q Consensus 70 ---P~~---pP~v~f~t--~i~Hpnv~~~G~ 92 (160)
-.. -|.+.|.| +++|-..++++.
T Consensus 74 S~Y~~~~~~gp~LsFdTyN~~iH~~s~p~~~ 104 (235)
T PF14135_consen 74 SSYRLKQDQGPVLSFDTYNEYIHYFSDPSNS 104 (235)
T ss_pred EEEEEecCCceEEEEEeCCceEEEccCCCcc
Confidence 222 37888876 478877765443
No 50
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=39.56 E-value=30 Score=24.18 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=19.6
Q ss_pred CCcceEEEEEcCCCCCCCC-CCEEEEEEEe
Q 031408 37 VNLMIWECIIPGKTGTDWE-GGYFPLTLYF 65 (160)
Q Consensus 37 ~~~~~w~~~i~Gp~~tpy~-gg~f~~~i~f 65 (160)
.|...|.|++.|++||+.. +.+|-+.+.|
T Consensus 45 Gd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 45 GDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred CCCcceEEEEECCCCcceeccccchheeeH
Confidence 5677889999999988763 3444444333
No 51
>PF06152 Phage_min_cap2: Phage minor capsid protein 2; InterPro: IPR009319 This entry is represented by Bacteriophage A118, Gp4, the minor capsid protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=38.60 E-value=1.6e+02 Score=24.17 Aligned_cols=59 Identities=27% Similarity=0.521 Sum_probs=34.1
Q ss_pred eEEEEEcC---CCCCCCCCCEEEEEEE----eCCCCCCCCCeeee--ccCcccccccCCCceeecCCCCCCCCCCcCCH
Q 031408 41 IWECIIPG---KTGTDWEGGYFPLTLY----FSEDYPSKPPKCKF--PQGFFHPNVYPSGTVCLSILNEDNGWRPAITV 110 (160)
Q Consensus 41 ~w~~~i~G---p~~tpy~gg~f~~~i~----fp~~YP~~pP~v~f--~t~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i 110 (160)
.+.++-++ |...||+|.+|...=. -...||.-.= .-. ...++||| |--.+.. |-|+.+.
T Consensus 226 lv~vS~H~garp~cap~QGkV~s~~~~~~~~~~~~y~~~~~-~gyg~~~Gl~g~N-------CrH~~~p---~~~Gi~~ 293 (361)
T PF06152_consen 226 LVEVSSHPGARPSCAPWQGKVYSLSGGGRPGKDGKYPSLSD-TGYGTPAGLFGPN-------CRHSLYP---FIPGIST 293 (361)
T ss_pred EEEEcCCCCCCCCCcCcCCEEEEeccCCCCCCCCCCCchhh-ccccccCCCcccC-------CCCcccC---CCCCCCC
Confidence 34444442 7889999999944321 1233432110 011 23578999 8777766 7787765
No 52
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=38.46 E-value=39 Score=27.55 Aligned_cols=23 Identities=13% Similarity=0.395 Sum_probs=19.7
Q ss_pred EEEEEEEeCCCCCCCCCeeeecc
Q 031408 58 YFPLTLYFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 58 ~f~~~i~fp~~YP~~pP~v~f~t 80 (160)
+|-+.|.+|..||...|.++|.+
T Consensus 307 ~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 307 TFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred EEEEEEeccCCCCCcCCeEEEEe
Confidence 46677888999999999999865
No 53
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=37.36 E-value=44 Score=26.93 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.0
Q ss_pred CEEEEEEEeCCCCCCCCCeeeeccC
Q 031408 57 GYFPLTLYFSEDYPSKPPKCKFPQG 81 (160)
Q Consensus 57 g~f~~~i~fp~~YP~~pP~v~f~t~ 81 (160)
-++.+.+..++.||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 5788889999999999999998764
No 54
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=36.61 E-value=51 Score=23.77 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=21.6
Q ss_pred CCEEEEEEEeCCCCC-----CCCCeeeecc
Q 031408 56 GGYFPLTLYFSEDYP-----SKPPKCKFPQ 80 (160)
Q Consensus 56 gg~f~~~i~fp~~YP-----~~pP~v~f~t 80 (160)
.|.|.|.=.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 378999999999999 8999998853
No 55
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=35.49 E-value=90 Score=20.39 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=20.0
Q ss_pred CCCCEEEEEEEeCCCCCCCCCeeeeccC
Q 031408 54 WEGGYFPLTLYFSEDYPSKPPKCKFPQG 81 (160)
Q Consensus 54 y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (160)
-+|..+.|.-.-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45677888777789999 589988754
No 56
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.89 E-value=11 Score=28.04 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=25.4
Q ss_pred CCceeecCCCCCCCCCCcCCHHHHHHHHHHhhc
Q 031408 90 SGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122 (160)
Q Consensus 90 ~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~ 122 (160)
.+..|++++.. .|+|.+|+..-+.-++.++.
T Consensus 135 ~~~f~~sIlDr--~Y~pdmt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 135 GSYFCLSILDR--YYKPDMTIEEALDLMKKCVL 165 (200)
T ss_pred hhhhhHHHHHh--hhCCCCCHHHHHHHHHHHHH
Confidence 35699999998 89999999988877766653
No 57
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=33.75 E-value=2.2e+02 Score=25.29 Aligned_cols=52 Identities=21% Similarity=0.313 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCC
Q 031408 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSK 72 (160)
Q Consensus 10 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~ 72 (160)
-|+.|+..|- ..+.+.+..---++|--...|.|. .++-| -+++..|.+||..
T Consensus 623 vlqgElarLD----~kF~v~ld~~~~~nN~I~liCkld-dk~lP------Pl~lsVP~~YPaq 674 (742)
T KOG4274|consen 623 VLQGELARLD----AKFEVDLDHQRHDNNHIILICKLD-DKQLP------PLRLSVPTTYPAQ 674 (742)
T ss_pred HHHHHHHhhc----cceeecCCcccccCCeeEEEEEec-CCCCC------Ceeeecccccccc
Confidence 4667777662 223332221111244333444444 34444 4888899999864
No 58
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=33.39 E-value=48 Score=19.83 Aligned_cols=19 Identities=16% Similarity=0.618 Sum_probs=12.2
Q ss_pred CCCCcCCHHHHHHHHHHhh
Q 031408 103 GWRPAITVKQILVGIQDLL 121 (160)
Q Consensus 103 ~W~p~~~i~~vl~~i~~ll 121 (160)
+|.|.++|.+++.......
T Consensus 37 gW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp ----SSSHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHH
Confidence 7999999999998776544
No 59
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=33.28 E-value=87 Score=19.23 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=32.6
Q ss_pred HHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408 116 GIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 116 ~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
.|+.++..-++..-+.++|...+.+--+.|...+-+.+.++|.
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAk 48 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAK 48 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556665555667789999999998888998888877776664
No 60
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=33.06 E-value=20 Score=19.25 Aligned_cols=14 Identities=29% Similarity=0.897 Sum_probs=10.7
Q ss_pred cccccccCCCc-eee
Q 031408 82 FFHPNVYPSGT-VCL 95 (160)
Q Consensus 82 i~Hpnv~~~G~-icl 95 (160)
-|||.++.+|+ .|-
T Consensus 7 ~yHP~~~~~G~W~CC 21 (36)
T smart00107 7 KYHPSFWVDGKWLCC 21 (36)
T ss_pred ccCCCceeCCeEccC
Confidence 48999998887 443
No 61
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=28.77 E-value=64 Score=24.45 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=43.2
Q ss_pred CCCCeeeeccCccccccc--CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCC
Q 031408 71 SKPPKCKFPQGFFHPNVY--PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPA 127 (160)
Q Consensus 71 ~~pP~v~f~t~i~Hpnv~--~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~ 127 (160)
..||-|.|-.+.|.-.|| +-|.|--.+...+.--.|+-.+.+-|..|..+|..|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 478999999999999998 567666666655222378888988899888888776643
No 62
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=26.95 E-value=21 Score=18.61 Aligned_cols=14 Identities=29% Similarity=0.904 Sum_probs=8.7
Q ss_pred cccccccCCCc-eee
Q 031408 82 FFHPNVYPSGT-VCL 95 (160)
Q Consensus 82 i~Hpnv~~~G~-icl 95 (160)
.|||.++.+|+ .|-
T Consensus 2 ~yHPg~~~~g~W~CC 16 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCC 16 (32)
T ss_dssp EE-SS-EETTCESSS
T ss_pred CcCCCcccCCcCcCC
Confidence 48999998887 443
No 63
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=26.48 E-value=66 Score=28.19 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=24.1
Q ss_pred CCCCCCEEEEEEEeCCCCCC---CCCeeeeccC
Q 031408 52 TDWEGGYFPLTLYFSEDYPS---KPPKCKFPQG 81 (160)
Q Consensus 52 tpy~gg~f~~~i~fp~~YP~---~pP~v~f~t~ 81 (160)
+||.=|.|.+ +.+|++||+ +-|-++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 6888888985 567889999 5799999986
No 64
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=25.99 E-value=71 Score=21.35 Aligned_cols=20 Identities=35% Similarity=0.796 Sum_probs=16.8
Q ss_pred ceEEEEEcCCCCCCCCCCEEEE
Q 031408 40 MIWECIIPGKTGTDWEGGYFPL 61 (160)
Q Consensus 40 ~~w~~~i~Gp~~tpy~gg~f~~ 61 (160)
..|.|.|=| +..|+|-.|+|
T Consensus 1 ~kWkC~iCg--~~I~~gqlFTF 20 (101)
T PF09943_consen 1 KKWKCYICG--KPIYEGQLFTF 20 (101)
T ss_pred CceEEEecC--CeeeecceEEE
Confidence 369999987 56899999987
No 65
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=25.05 E-value=96 Score=23.16 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=20.0
Q ss_pred CCEEEEEEEeCCCCCC-----CCCeeeec
Q 031408 56 GGYFPLTLYFSEDYPS-----KPPKCKFP 79 (160)
Q Consensus 56 gg~f~~~i~fp~~YP~-----~pP~v~f~ 79 (160)
.|.|.|.=..|-.||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3779999999999998 78887764
No 66
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.49 E-value=67 Score=27.02 Aligned_cols=19 Identities=42% Similarity=0.873 Sum_probs=13.7
Q ss_pred EEEEeCCCCCC-CCCeeeec
Q 031408 61 LTLYFSEDYPS-KPPKCKFP 79 (160)
Q Consensus 61 ~~i~fp~~YP~-~pP~v~f~ 79 (160)
+.+.+|++||. +||++...
T Consensus 78 lkf~LP~~YPs~spP~f~l~ 97 (445)
T KOG1814|consen 78 LKFHLPNDYPSVSPPKFELK 97 (445)
T ss_pred eeeecCCccccCCCCceeee
Confidence 56678999998 56766443
No 67
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=22.97 E-value=1.4e+02 Score=17.74 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=18.8
Q ss_pred ccCHHHHHHHhhCHHHHHHHHH
Q 031408 129 PAQTDGYQLFIQDPAEYKRRVR 150 (160)
Q Consensus 129 p~n~~a~~~~~~~~~~f~~~~r 150 (160)
.-|++.+.+..+|+++|.+...
T Consensus 33 ~~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 33 QSNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHH
T ss_pred ccCHHHHHHHHHCHHHHHHHHc
Confidence 3599999999999999988754
No 68
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=22.59 E-value=1.2e+02 Score=22.55 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=18.7
Q ss_pred CEEEEEEEeCCCCCC-----CCCeeeec
Q 031408 57 GYFPLTLYFSEDYPS-----KPPKCKFP 79 (160)
Q Consensus 57 g~f~~~i~fp~~YP~-----~pP~v~f~ 79 (160)
|.|.|.=.+|--||. .||.|.|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 779999999999995 77777653
No 69
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=22.30 E-value=1.3e+02 Score=21.82 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=26.8
Q ss_pred ccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHh
Q 031408 83 FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120 (160)
Q Consensus 83 ~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~l 120 (160)
-+--|+++|+|.... . ++++.-+...|+..|..+
T Consensus 122 ~TfvId~dG~I~~~~--~--~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 122 STFVIDPDGKIRYVW--R--KVKVKGHADEVLAALKKL 155 (157)
T ss_pred eEEEECCCCeEEEEe--c--CCCCcccHHHHHHHHHHh
Confidence 344578889998876 3 688888999999988865
No 70
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=21.62 E-value=1.5e+02 Score=24.16 Aligned_cols=38 Identities=16% Similarity=0.430 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCC-CCCCCEEEEEEE---eCCCCCCCCCeeeec
Q 031408 41 IWECIIPGKTGT-DWEGGYFPLTLY---FSEDYPSKPPKCKFP 79 (160)
Q Consensus 41 ~w~~~i~Gp~~t-py~gg~f~~~i~---fp~~YP~~pP~v~f~ 79 (160)
+|+..+.|-.|+ -|++|.+++++. |-. -=.+-|++||-
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn-~~qR~PriRfG 239 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKN-LYQRGPRIRFG 239 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEecccccc-ccccCCceEee
Confidence 588999996555 788999988876 332 33456788884
No 71
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=21.62 E-value=65 Score=19.33 Aligned_cols=11 Identities=36% Similarity=0.456 Sum_probs=8.6
Q ss_pred HHHHHHHHHHH
Q 031408 8 RGRLTEERKAW 18 (160)
Q Consensus 8 ~~Rl~~E~~~l 18 (160)
-+||++|+.++
T Consensus 36 r~rL~kEL~d~ 46 (59)
T PF12065_consen 36 RQRLRKELQDM 46 (59)
T ss_pred HHHHHHHHHHc
Confidence 36888888877
No 72
>PF10875 DUF2670: Protein of unknown function (DUF2670); InterPro: IPR022714 This bacterial family of proteins has no known function and appears to be restricted to Rickettsiaceae.
Probab=21.62 E-value=1.3e+02 Score=20.87 Aligned_cols=58 Identities=19% Similarity=0.304 Sum_probs=34.0
Q ss_pred eecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCCC
Q 031408 94 CLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPVI 160 (160)
Q Consensus 94 cl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~~ 160 (160)
|..-|.. +|.. |.++..++.+|....--.---++.+++.-+.+..+-.+++.+++-||
T Consensus 71 Ct~kL~p--~~~~-------lv~fW~Cl~dpgeY~~~E~tg~q~Led~i~k~~~K~~dsv~~~~~pI 128 (139)
T PF10875_consen 71 CTSKLGP--NWGH-------LVSFWNCLSDPGEYESEEGTGAQVLEDGINKLINKQLDSVADAEHPI 128 (139)
T ss_pred cccccCC--ccch-------HHHHHHHcCCCccccccccchhHHHHHHHHHhcccchhhhhhccccc
Confidence 6666666 5643 44577788887754333322344555555555566666777777554
No 73
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=21.51 E-value=1.4e+02 Score=23.62 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=25.8
Q ss_pred ccCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 031408 129 PAQTDGYQLFIQDPAEYKRRVRQQAKQYP 157 (160)
Q Consensus 129 p~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 157 (160)
-.+.+|+..|..+++.|...+.+.+++.+
T Consensus 238 F~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 238 FSSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred eCCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 36889999999999999999999998764
No 74
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=20.66 E-value=1.3e+02 Score=20.01 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCCCCCCEEEEEEEeCC
Q 031408 42 WECIIPGKTGTDWEGGYFPLTLYFSE 67 (160)
Q Consensus 42 w~~~i~Gp~~tpy~gg~f~~~i~fp~ 67 (160)
.|+.++|++..+=.|..+.+++.|-+
T Consensus 78 ~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 78 YHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CEEEEECESS-B-TTEEEEEEEEETT
T ss_pred EEEEEeCCcccCCCCCEEEEEEEECC
Confidence 68899998888899999999999864
Done!