Query 031410
Match_columns 160
No_of_seqs 189 out of 1145
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 22:05:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 100.0 1.1E-37 3.9E-42 240.7 12.4 127 28-156 1-231 (248)
2 1kca_A Repressor protein CI; g 99.4 1.8E-12 6.1E-17 87.8 10.8 90 34-157 14-109 (109)
3 1umu_A UMUD'; induced mutagene 99.2 1.4E-10 4.6E-15 79.1 10.0 87 33-153 27-114 (116)
4 2hnf_A Repressor protein CI101 99.0 2.2E-09 7.5E-14 74.8 10.5 82 34-148 45-132 (133)
5 1jhf_A LEXA repressor; LEXA SO 99.0 5.4E-09 1.8E-13 77.4 10.9 86 34-152 111-198 (202)
6 3bdn_A Lambda repressor; repre 99.0 2.5E-09 8.4E-14 80.7 9.0 90 34-157 141-236 (236)
7 3k2z_A LEXA repressor; winged 98.7 3E-07 1E-11 67.8 12.2 83 33-148 109-192 (196)
8 2fjr_A Repressor protein CI; g 97.1 0.0027 9.1E-08 45.7 8.7 72 41-148 113-184 (189)
9 3v2d_O 50S ribosomal protein L 85.7 6.2 0.00021 26.5 8.6 85 34-139 20-105 (122)
10 3r8s_K 50S ribosomal protein L 83.8 6.5 0.00022 26.4 7.4 87 34-140 20-107 (122)
11 3bbo_M Ribosomal protein L14; 81.3 9.1 0.00031 25.6 7.3 27 113-140 80-106 (121)
12 1whi_A Ribosomal protein L14; 80.3 10 0.00035 25.4 7.4 27 112-139 79-105 (122)
13 1w4s_A Polybromo, polybromo 1 72.1 4.4 0.00015 28.6 4.0 92 44-148 6-107 (174)
14 3a2z_A Bifunctional glutathion 38.4 1.1E+02 0.0037 22.0 6.7 37 64-100 110-147 (197)
15 4dov_A ORC1, origin recognitio 35.0 1.1E+02 0.0039 21.3 7.4 26 65-91 38-63 (163)
16 2dgy_A MGC11102 protein; EIF-1 32.4 38 0.0013 22.1 2.9 41 36-77 22-65 (111)
17 1d7q_A Translation initiation 28.9 45 0.0015 22.8 3.0 42 35-76 37-80 (143)
18 1jt8_A EIF-1A, probable transl 28.0 21 0.00073 23.0 1.1 12 65-76 58-69 (102)
19 3i4o_A Translation initiation 27.2 21 0.00071 21.9 0.9 12 65-76 53-64 (79)
20 1vq8_K 50S ribosomal protein L 26.7 43 0.0015 22.6 2.5 29 111-140 89-117 (132)
21 2pp6_A Gifsy-2 prophage ATP-bi 26.7 1.3E+02 0.0044 19.3 4.8 44 43-94 45-88 (102)
22 1wid_A DNA-binding protein RAV 26.3 1E+02 0.0034 20.3 4.4 17 64-80 90-106 (130)
23 3nx6_A 10KDA chaperonin; bacte 25.5 1.1E+02 0.0039 19.2 4.2 41 48-92 4-44 (95)
24 3u5e_V L17A, YL32, 60S ribosom 24.9 45 0.0015 22.7 2.3 28 111-139 94-121 (137)
25 3j21_J 50S ribosomal protein L 23.6 40 0.0014 23.1 1.9 30 110-140 97-126 (141)
26 3pqh_A Gene product 138; beta- 23.2 78 0.0027 21.2 3.2 48 50-100 20-71 (127)
27 4dt4_A FKBP-type 16 kDa peptid 22.7 1.8E+02 0.0062 20.1 5.3 34 65-100 112-145 (169)
28 2coa_A Protein kinase C, D2 ty 22.3 63 0.0022 21.6 2.6 33 115-147 26-62 (125)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=100.00 E-value=1.1e-37 Score=240.70 Aligned_cols=127 Identities=35% Similarity=0.472 Sum_probs=108.1
Q ss_pred HhhceEEeEEEeCCCCccccCCCCcEEEEEecccC------------CCCCCCCcEEEEeeCCCCCceEEEEEEeeCCCE
Q 031410 28 TNHYLWSPTLVFGPSMLPTLNLTGDVILAEYVSHR------------VGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDR 95 (160)
Q Consensus 28 ~~~~~~~~~~v~g~SM~Ptl~~~Gd~vlv~~~~~~------------~~~~~~GDiVvf~~p~~~~~~~iKRVv~~~Gd~ 95 (160)
++.|+++++.|.|+||+|||+ .||++++++.++. ..++++||+|+|+.|.+++..+||||+|+|||+
T Consensus 1 ir~fv~~~~~v~g~SM~Ptl~-~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD~ 79 (248)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLL-IGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDK 79 (248)
T ss_dssp -CBCCEEEEECCSCTTTTTSC-TTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTCE
T ss_pred CeEEEEEEEEecccccccccc-CCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCCE
Confidence 457899999999999999999 9999999997643 258999999999998877889999999999999
Q ss_pred EEEecC-------------------CCC--------C-------------------------------------------
Q 031410 96 VTYFKP-------------------RNG--------D------------------------------------------- 105 (160)
Q Consensus 96 v~~~~~-------------------~~~--------~------------------------------------------- 105 (160)
|+++++ ... .
T Consensus 80 v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~e~l~~~~ 159 (248)
T 1b12_A 80 VTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVT 159 (248)
T ss_dssp EEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEEEETTEE
T ss_pred EEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhhHHhhhcCcc
Confidence 998754 100 0
Q ss_pred ----------------------CcceEEccCCcEEEEcCCCCCCCCCCcccceeCCCeEEEEEEEEecCCCCC
Q 031410 106 ----------------------SCHTVVVPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRQVWPPNSF 156 (160)
Q Consensus 106 ----------------------~~~~~~vp~~~~~v~gdn~~~s~DSR~~G~V~~~~I~G~v~~~~~~p~~~~ 156 (160)
...+++||+|+|||||||+++|.|||+||+||+++|+|||.++ +||+++.
T Consensus 160 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i-~~s~~~~ 231 (248)
T 1b12_A 160 HRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAI-WMSFDKQ 231 (248)
T ss_dssp EEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEE-EEEBC--
T ss_pred ceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEE-EEeCCcc
Confidence 0124689999999999999999999999999999999999999 8776643
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.43 E-value=1.8e-12 Score=87.75 Aligned_cols=90 Identities=26% Similarity=0.355 Sum_probs=70.7
Q ss_pred EeEEEeCCCCc------cccCCCCcEEEEEecccCCCCCCCCcEEEEeeCCCCCceEEEEEEeeCCCEEEEecCCCCCCc
Q 031410 34 SPTLVFGPSML------PTLNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSC 107 (160)
Q Consensus 34 ~~~~v~g~SM~------Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~iKRVv~~~Gd~v~~~~~~~~~~~ 107 (160)
..++|.|+||+ |+|. +||++++++. .+++.||+|++..++ ++.++||+...+
T Consensus 14 f~~~V~GdSM~~~~g~~p~i~-~Gd~v~Vd~~----~~~~~Gdivv~~~~~--~~~~vKrl~~~~--------------- 71 (109)
T 1kca_A 14 FWLEVEGNSMTAPTGSKPSFP-DGMLILVDPE----QAVEPGDFCIARLGG--DEFTFKKLIRDS--------------- 71 (109)
T ss_dssp EEEECCSSTTCCCTTCSSCCC-TTCEEEEETT----SCCCTTCEEEEECST--TCEEEEEEEEET---------------
T ss_pred EEEEEeCcCcCCCCCCCCeeC-CCCEEEEecC----CcCCCCCEEEEEECC--CeEEEEEEEEeC---------------
Confidence 45789999999 9998 9999999873 469999999999743 478999999754
Q ss_pred ceEEccCCcEEEEcCCCCCCCCCCcccceeCCCeEEEEEEEEecCCCCCc
Q 031410 108 HTVVVPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRQVWPPNSFG 157 (160)
Q Consensus 108 ~~~~vp~~~~~v~gdn~~~s~DSR~~G~V~~~~I~G~v~~~~~~p~~~~~ 157 (160)
|++++.+||+... ..... ..-+|+|+|.+. +||+..||
T Consensus 72 -------~~~~L~s~N~~y~--~~~~~--~~~~IiG~Vv~~-~~~~~~~~ 109 (109)
T 1kca_A 72 -------GQVFLQPLNPQYP--MIPCN--ESCSVVGKVIAS-QWPEETFG 109 (109)
T ss_dssp -------TEEEEECSSTTSC--CEECC--TTCEEEEEEEEE-ECCGGGGC
T ss_pred -------CEEEEEECCCCCC--CEEcC--CCcEEEEEEEEE-EeCHHHcC
Confidence 3788899986322 12111 356799999999 99987775
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=99.20 E-value=1.4e-10 Score=79.06 Aligned_cols=87 Identities=16% Similarity=0.085 Sum_probs=62.9
Q ss_pred EEeEEEeCCCCcc-ccCCCCcEEEEEecccCCCCCCCCcEEEEeeCCCCCceEEEEEEeeCCCEEEEecCCCCCCcceEE
Q 031410 33 WSPTLVFGPSMLP-TLNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSCHTVV 111 (160)
Q Consensus 33 ~~~~~v~g~SM~P-tl~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~iKRVv~~~Gd~v~~~~~~~~~~~~~~~ 111 (160)
.....|.|+||+| +++ +||++++++. .+++.||+|++..+ ++.++||+...+
T Consensus 27 ~~~~~v~GdSM~p~~i~-~Gd~v~vd~~----~~~~~gdivv~~~~---~~~~vKr~~~~~------------------- 79 (116)
T 1umu_A 27 TYFVKASGDSMIDGGIS-DGDLLIVDSA----ITASHGDIVIAAVD---GEFTVKKLQLRP------------------- 79 (116)
T ss_dssp EEEEECCSSTTGGGTCC-TTCEEEEETT----SCCCTTCEEEEEET---TEEEEEEEECSS-------------------
T ss_pred EEEEEECCCCcCCCCCC-CCCEEEEEcC----CCCCCCCEEEEEEC---CEEEEEEEEeCC-------------------
Confidence 4568999999999 898 9999999873 36899999999973 378999998732
Q ss_pred ccCCcEEEEcCCCCCCCCCCcccceeCCCeEEEEEEEEecCC
Q 031410 112 VPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRQVWPP 153 (160)
Q Consensus 112 vp~~~~~v~gdn~~~s~DSR~~G~V~~~~I~G~v~~~~~~p~ 153 (160)
.+++.+||+.. .......-..-+|+|+|.+. +..+
T Consensus 80 ----~~~L~s~N~~y--~~~~i~~~~~~~IiG~Vv~~-~r~~ 114 (116)
T 1umu_A 80 ----TVQLIPMNSAY--SPITISSEDTLDVFGVVIHV-VKAA 114 (116)
T ss_dssp ----SCEEECSSTTS--CCEECCTTSCEEEEEEEEEE-EC--
T ss_pred ----cEEEECCCCCC--CCEEcCCCCeEEEEEEEEEE-EEec
Confidence 56788888632 12111111234699999997 5544
No 4
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=99.04 E-value=2.2e-09 Score=74.78 Aligned_cols=82 Identities=21% Similarity=0.199 Sum_probs=62.3
Q ss_pred EeEEEeCCCCc------cccCCCCcEEEEEecccCCCCCCCCcEEEEeeCCCCCceEEEEEEeeCCCEEEEecCCCCCCc
Q 031410 34 SPTLVFGPSML------PTLNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSC 107 (160)
Q Consensus 34 ~~~~v~g~SM~------Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~iKRVv~~~Gd~v~~~~~~~~~~~ 107 (160)
...+|.|+||+ |+|. +||++++++. .+++.||+|++...+ ++..+||+...+
T Consensus 45 f~~~V~GdSM~~~~g~~p~i~-~Gd~v~vd~~----~~~~~Gdivv~~~~~--~~~~vKrl~~~~--------------- 102 (133)
T 2hnf_A 45 FWLEVEGNSMTTPTGSKTSFP-DGMLILVDPE----QAVEPGDFCIARLGG--DEFTFAKLIRDS--------------- 102 (133)
T ss_dssp EEEECCSSTTCCC---CCCCC-TTCEEEEETT----SCCCTTSEEEEEETT--TEEEEEEEEEET---------------
T ss_pred EEEEEeCCCcCCCcCCCCccC-CCCEEEEccC----CCCCCCCEEEEEECC--CEEEEEEEEEeC---------------
Confidence 45789999999 9998 9999999973 478999999999743 478999998744
Q ss_pred ceEEccCCcEEEEcCCCCCCCCCCcccceeCCCeEEEEEEE
Q 031410 108 HTVVVPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFR 148 (160)
Q Consensus 108 ~~~~vp~~~~~v~gdn~~~s~DSR~~G~V~~~~I~G~v~~~ 148 (160)
|.+++.+||+... ..... ..-+|+|+|.+.
T Consensus 103 -------~~~~L~s~N~~y~--~~~~~--~~~~IiG~Vv~~ 132 (133)
T 2hnf_A 103 -------GQVFLQPLNPQYP--MIPCN--ESCSVVGKVIAS 132 (133)
T ss_dssp -------TEEEEECSSTTSC--CEECS--TTEEEEEEEEEE
T ss_pred -------CeEEEEECCCCCC--CEEcC--CCCEEEEEEEEE
Confidence 3677889986321 11111 345799999873
No 5
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=98.98 E-value=5.4e-09 Score=77.38 Aligned_cols=86 Identities=21% Similarity=0.177 Sum_probs=62.3
Q ss_pred EeEEEeCCCCccc-cCCCCcEEEEEecccCCCCCCCCcEEEEeeCCCCCceEEEEEEeeCCCEEEEecCCCCCCcceEEc
Q 031410 34 SPTLVFGPSMLPT-LNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSCHTVVV 112 (160)
Q Consensus 34 ~~~~v~g~SM~Pt-l~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~iKRVv~~~Gd~v~~~~~~~~~~~~~~~v 112 (160)
....|.|+||+|+ +. +||++++++. .+++.||+|++.. +++..+||+. .+|+
T Consensus 111 ~~~~v~GdSM~p~~i~-~Gd~v~vd~~----~~~~~G~i~v~~~---~~~~~vKrl~-~~~~------------------ 163 (202)
T 1jhf_A 111 FLLRVSGMSMKDIGIM-DGDLLAVHKT----QDVRNGQVVVARI---DDEVTVKRLK-KQGN------------------ 163 (202)
T ss_dssp EEEECCSSTTGGGTCC-TTCEEEEEEC----SCCCTTSEEEEEE---TTEEEEEEEE-EETT------------------
T ss_pred EEEEECCCCCCCCCCC-CCCEEEEecc----CCcCCCeEEEEEE---CCEEEEEEEE-EeCC------------------
Confidence 4678999999999 98 9999999873 4689999999997 3478999998 4554
Q ss_pred cCCcEEEEcCCCCCCCCCCccc-ceeCCCeEEEEEEEEecC
Q 031410 113 PKGHVWIQGDNLYASRDSRQFG-PVPYGLIEGKAFFRQVWP 152 (160)
Q Consensus 113 p~~~~~v~gdn~~~s~DSR~~G-~V~~~~I~G~v~~~~~~p 152 (160)
.+++.+||+.. ...... .-..-.|+|+|.+. +..
T Consensus 164 ---~~~l~s~N~~y--~~~~~~~~~~~~~IiG~Vv~~-~r~ 198 (202)
T 1jhf_A 164 ---KVELLPENSEF--KPIVVDLRQQSFTIEGLAVGV-IRN 198 (202)
T ss_dssp ---EEEEECSSTTC--CCEEEETTTSCEEEEEEEEEE-EEC
T ss_pred ---EEEEEECCCCC--CCEEccCCCCceEEEEEEEEE-EEc
Confidence 67778888532 121110 00123599999987 544
No 6
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.97 E-value=2.5e-09 Score=80.74 Aligned_cols=90 Identities=26% Similarity=0.362 Sum_probs=68.4
Q ss_pred EeEEEeCCCCc------cccCCCCcEEEEEecccCCCCCCCCcEEEEeeCCCCCceEEEEEEeeCCCEEEEecCCCCCCc
Q 031410 34 SPTLVFGPSML------PTLNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSC 107 (160)
Q Consensus 34 ~~~~v~g~SM~------Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~iKRVv~~~Gd~v~~~~~~~~~~~ 107 (160)
....|.|+||+ |++. +||++++++- .+++.||+|++.. +.++..+||+...+|
T Consensus 141 ~~l~V~GdSM~~~~g~~P~i~-~Gd~v~vd~~----~~~~~g~ivv~~~--~~~~~~vKrl~~~~~-------------- 199 (236)
T 3bdn_A 141 FWLEVEGNSMTAPTGSKPSFP-DGMLILVDPE----QAVEPGDFCIARL--GGDEFTFKKLIRGSG-------------- 199 (236)
T ss_dssp EEEECCSSSSCCCSSCSSCCC-SSCEEEECCS----SCCCTTSEEEEES--TTTCCCCEEEECCSS--------------
T ss_pred EEEEEeCCCcCCCCCCCCcCC-CCCEEEECCC----CCCCCCcEEEEEE--CCCeEEEEEEEEcCC--------------
Confidence 35689999999 9998 9999999872 3789999999987 234789999987443
Q ss_pred ceEEccCCcEEEEcCCCCCCCCCCcccceeCCCeEEEEEEEEecCCCCCc
Q 031410 108 HTVVVPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRQVWPPNSFG 157 (160)
Q Consensus 108 ~~~~vp~~~~~v~gdn~~~s~DSR~~G~V~~~~I~G~v~~~~~~p~~~~~ 157 (160)
.+++.+||+.. .....- ..-.|+|+|++. .||...|+
T Consensus 200 --------~~~L~s~N~~y--~~~~~~--~~~~IiG~Vv~~-~~~~~~~~ 236 (236)
T 3bdn_A 200 --------QVFLQPLNPQY--PMIPCN--ESCSVVGKVIAS-QWPEETFG 236 (236)
T ss_dssp --------SCEEECSSTTS--CCBC----CCCEEEEEEEEC-CCCSSSCC
T ss_pred --------cEEEEeCCCCC--CCeecC--CCcEEEEEEEEE-EcCHHhcC
Confidence 67788888632 222111 345799999999 99988775
No 7
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.70 E-value=3e-07 Score=67.76 Aligned_cols=83 Identities=23% Similarity=0.124 Sum_probs=62.0
Q ss_pred EEeEEEeCCCC-ccccCCCCcEEEEEecccCCCCCCCCcEEEEeeCCCCCceEEEEEEeeCCCEEEEecCCCCCCcceEE
Q 031410 33 WSPTLVFGPSM-LPTLNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSCHTVV 111 (160)
Q Consensus 33 ~~~~~v~g~SM-~Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~iKRVv~~~Gd~v~~~~~~~~~~~~~~~ 111 (160)
....+|.|+|| +|++. +||++++++- ..++.||+|++... ++..+||+.-.+
T Consensus 109 ~f~l~v~GdSM~~p~i~-~GD~viv~~~----~~~~~G~ivv~~~~---~~~~vKr~~~~~------------------- 161 (196)
T 3k2z_A 109 HFLLKVKGESMIEEHIC-DGDLVLVRRQ----DWAQNGDIVAAMVD---GEVTLAKFYQRG------------------- 161 (196)
T ss_dssp EEEEECCSSTTGGGTCC-TTCEEEEEEC----SCCCTTCEEEEEET---TEEEEEEEEEET-------------------
T ss_pred EEEEEEeCCCcCCCCCC-CCCEEEEecc----CcCCCCCEEEEEEC---CcEEEEEEEEEC-------------------
Confidence 45679999999 69998 9999999973 47899999999973 489999997643
Q ss_pred ccCCcEEEEcCCCCCCCCCCcccceeCCCeEEEEEEE
Q 031410 112 VPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFR 148 (160)
Q Consensus 112 vp~~~~~v~gdn~~~s~DSR~~G~V~~~~I~G~v~~~ 148 (160)
|.+++..+|+... ....- -..-.|+|+|.+.
T Consensus 162 ---~~~~L~~~N~~y~--~i~i~-~~~~~i~G~Vv~~ 192 (196)
T 3k2z_A 162 ---DTVELRPANREMS--SMFFR-AEKVKILGKVVGV 192 (196)
T ss_dssp ---TEEEEECSCTTSC--CEEEE-GGGCEEEEEEEEE
T ss_pred ---CEEEEEECCCCCC--CEEec-CCCEEEEEEEEEE
Confidence 3678888886321 11111 1234799999886
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=97.14 E-value=0.0027 Score=45.68 Aligned_cols=72 Identities=10% Similarity=0.126 Sum_probs=49.3
Q ss_pred CCCccccCCCCcEEEEEecccCCCCCCCCcEEEEeeCCCCCceEEEEEEeeCCCEEEEecCCCCCCcceEEccCCcEEEE
Q 031410 41 PSMLPTLNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSCHTVVVPKGHVWIQ 120 (160)
Q Consensus 41 ~SM~Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~iKRVv~~~Gd~v~~~~~~~~~~~~~~~vp~~~~~v~ 120 (160)
.+|...-. +||++++++ . .+..|+++++.. .++..+||+.-.+|+ .+.+.
T Consensus 113 ~~~~~v~~-~Gd~v~Vd~---~--~~~~g~i~vv~~---~g~~~vKrl~~~~~~---------------------~i~L~ 162 (189)
T 2fjr_A 113 TDGMAIRS-EGKIYFVDK---Q--ASLSDGLWLVDI---KGAISIRELTKLPGR---------------------KLHVA 162 (189)
T ss_dssp SSEEEEEE-TTEEEEEET---T--CCSCSEEEEEEE---TTEEEEEEEEEETTT---------------------EEEEE
T ss_pred CCeEEEee-CCcEEEEEc---C--CccCCCEEEEEe---CCeEEEEEEEECCCC---------------------EEEEE
Confidence 34554344 899999987 2 477899999987 347899999886654 56677
Q ss_pred cCCCCCCCCCCcccceeCCCeEEEEEEE
Q 031410 121 GDNLYASRDSRQFGPVPYGLIEGKAFFR 148 (160)
Q Consensus 121 gdn~~~s~DSR~~G~V~~~~I~G~v~~~ 148 (160)
+||+ + ...-. ..-.|+|+|++.
T Consensus 163 s~N~----~-~~i~~-~~i~IiG~Vv~~ 184 (189)
T 2fjr_A 163 GGKV----P-FECGI-DDIKTLGRVVGV 184 (189)
T ss_dssp SSSS----C-EEEET-TSSEEEEEEEEE
T ss_pred eCCC----C-eEecc-cceEEEEEEEEE
Confidence 7775 1 11111 334599999886
No 9
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=85.67 E-value=6.2 Score=26.46 Aligned_cols=85 Identities=26% Similarity=0.309 Sum_probs=45.0
Q ss_pred EeEEEeCCCCccccCCCCcEEEEE-ecccCCCCCCCCcEEEEeeCCCCCceEEEEEEeeCCCEEEEecCCCCCCcceEEc
Q 031410 34 SPTLVFGPSMLPTLNLTGDVILAE-YVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSCHTVVV 112 (160)
Q Consensus 34 ~~~~v~g~SM~Ptl~~~Gd~vlv~-~~~~~~~~~~~GDiVvf~~p~~~~~~~iKRVv~~~Gd~v~~~~~~~~~~~~~~~v 112 (160)
....+.|.+-...-. -||.+++. +-......+++||++-.-.-... |-+-...|-.+.+
T Consensus 20 ~cI~Vlg~~~rr~a~-iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtk-----k~~rR~dG~~i~F-------------- 79 (122)
T 3v2d_O 20 MCIRVLKGSNAKYAT-VGDVIVASVKEAIPRGAVKEGDVVKAVVVRTK-----KEIKRPDGSAIRF-------------- 79 (122)
T ss_dssp EEEEEESTTTCCCBC-TTCEEEEEEEEECSSSSSCTTCEEEEEEEECS-----SCEECTTSCEEEE--------------
T ss_pred EEEEEeCCCCCcccC-CCCEEEEEEEEcCCCCccccCCEEEEEEEEeC-----CccCCCCCcEEEc--------------
Confidence 445666665555554 67777763 11111234667776422110000 1111223444444
Q ss_pred cCCcEEEEcCCCCCCCCCCcccceeCC
Q 031410 113 PKGHVWIQGDNLYASRDSRQFGPVPYG 139 (160)
Q Consensus 113 p~~~~~v~gdn~~~s~DSR~~G~V~~~ 139 (160)
.+|..-++.++. +..-+|-||||++|
T Consensus 80 ddNa~Vlin~~~-~p~GTrI~GpVarE 105 (122)
T 3v2d_O 80 DDNAAVIINNQL-EPRGTRVFGPVARE 105 (122)
T ss_dssp SSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred CCcEEEEECCCC-CEeeeEEEccchHH
Confidence 445666666654 78899999999986
No 10
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=83.77 E-value=6.5 Score=26.38 Aligned_cols=87 Identities=22% Similarity=0.259 Sum_probs=46.0
Q ss_pred EeEEEeCCCCccccCCCCcEEEEE-ecccCCCCCCCCcEEEEeeCCCCCceEEEEEEeeCCCEEEEecCCCCCCcceEEc
Q 031410 34 SPTLVFGPSMLPTLNLTGDVILAE-YVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSCHTVVV 112 (160)
Q Consensus 34 ~~~~v~g~SM~Ptl~~~Gd~vlv~-~~~~~~~~~~~GDiVvf~~p~~~~~~~iKRVv~~~Gd~v~~~~~~~~~~~~~~~v 112 (160)
....+.|.+-...-. -||.+++. +-......+++||++-.-.-.. . |-+-...|-.+.+
T Consensus 20 ~cI~Vlgg~~r~~a~-iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRt--k---k~~rR~dG~~i~F-------------- 79 (122)
T 3r8s_K 20 MCIKVLGGSHRRYAG-VGDIIKITIKEAIPRGKVKKGDVLKAVVVRT--K---KGVRRPDGSVIRF-------------- 79 (122)
T ss_dssp EEEEECSSSSCCCBC-TTCEEEEEEEEECTTSSSCTTCEEEEEEEEC--S---SCEECTTSCEEEE--------------
T ss_pred EEEEEeCCCCCCccc-CCCEEEEEEEEcCCCCccccCCEEEEEEEEe--C---CcCCCCCCcEEEc--------------
Confidence 445666665555554 67777763 1111123456677542211000 0 0111223444444
Q ss_pred cCCcEEEEcCCCCCCCCCCcccceeCCC
Q 031410 113 PKGHVWIQGDNLYASRDSRQFGPVPYGL 140 (160)
Q Consensus 113 p~~~~~v~gdn~~~s~DSR~~G~V~~~~ 140 (160)
.+|..-++.++..+..-+|-||||++|.
T Consensus 80 ddNa~Vlin~~~g~p~GTrI~GpVarEl 107 (122)
T 3r8s_K 80 DGNACVLLNNNSEQPIGTRIFGPVTREL 107 (122)
T ss_dssp SSCEEEEEETTTEEESCSCBCSCCCGGG
T ss_pred CCceEEEEeCCCCCEeeeEEEccccHHH
Confidence 4456667776634678899999999863
No 11
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=81.33 E-value=9.1 Score=25.60 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=19.7
Q ss_pred cCCcEEEEcCCCCCCCCCCcccceeCCC
Q 031410 113 PKGHVWIQGDNLYASRDSRQFGPVPYGL 140 (160)
Q Consensus 113 p~~~~~v~gdn~~~s~DSR~~G~V~~~~ 140 (160)
.+|..-++.++ .+..-+|-||||++|.
T Consensus 80 ddNa~Vlin~~-g~p~GTrI~GPVarEl 106 (121)
T 3bbo_M 80 DDNAAVIIDQE-GNPKGTRIFGAIAREL 106 (121)
T ss_dssp SSCEEEECCTT-SSCSSSCCCSCCCGGG
T ss_pred CCceEEEECCC-CCEeEeEEEcCcCHHH
Confidence 44566666655 3788999999999864
No 12
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=80.35 E-value=10 Score=25.38 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=20.2
Q ss_pred ccCCcEEEEcCCCCCCCCCCcccceeCC
Q 031410 112 VPKGHVWIQGDNLYASRDSRQFGPVPYG 139 (160)
Q Consensus 112 vp~~~~~v~gdn~~~s~DSR~~G~V~~~ 139 (160)
..+|..-++.++. +..-+|-||||++|
T Consensus 79 FddNa~Vlin~~g-~p~GTrI~GPVarE 105 (122)
T 1whi_A 79 FDENACVIIRDDK-SPRGTRIFGPVARE 105 (122)
T ss_dssp CSSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred eCCceEEEECCCC-CEeeeEEEccchHH
Confidence 3455666666664 78889999999976
No 13
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=72.12 E-value=4.4 Score=28.59 Aligned_cols=92 Identities=16% Similarity=0.132 Sum_probs=42.7
Q ss_pred ccccCCCCcEEEEEecccCCCCCCCCcEEEEeeCCCCCceEEEEEEeeCCC---EEEEec-----CCC--CCCcceEEcc
Q 031410 44 LPTLNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGD---RVTYFK-----PRN--GDSCHTVVVP 113 (160)
Q Consensus 44 ~Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~iKRVv~~~Gd---~v~~~~-----~~~--~~~~~~~~vp 113 (160)
+|-.. .++.............++.||.|.+..++++...+|.||..+-.+ ...+.- +.. ....... -
T Consensus 6 ~~~~~-~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~WfyRPeet~~~~~~~~--~ 82 (174)
T 1w4s_A 6 SAGLS-SLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKF--L 82 (174)
T ss_dssp ---------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCEEEEEEEEECGGGSCCCTTCEE--E
T ss_pred Ccccc-CCCcEEeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEecCHHHcccccCCcC--C
Confidence 35554 555555444444456899999999998765667888888875321 122210 100 0000111 2
Q ss_pred CCcEEEEcCCCCCCCCCCcccceeCCCeEEEEEEE
Q 031410 114 KGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFR 148 (160)
Q Consensus 114 ~~~~~v~gdn~~~s~DSR~~G~V~~~~I~G~v~~~ 148 (160)
++++|.. .++--++.+.|.||+.-.
T Consensus 83 ~~EvF~S----------~~~d~~~~~~I~gkC~V~ 107 (174)
T 1w4s_A 83 EKEVFKS----------DYYNKVPVSKILGKCVVM 107 (174)
T ss_dssp TTEEEEE----------EEEEEEEGGGEEEEEEEE
T ss_pred CCeeEEe----------CCcceecHHHeeeeEEEE
Confidence 5566653 345578999999998643
No 14
>3a2z_A Bifunctional glutathionylspermidine synthetase/AM; GSP amidase, ATP-binding, hydrolase, ligase, multifunctional nucleotide-binding; 1.50A {Escherichia coli} PDB: 3a30_A 3a2y_A*
Probab=38.44 E-value=1.1e+02 Score=22.01 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=25.8
Q ss_pred CCCCCCcEEEEeeC-CCCCceEEEEEEeeCCCEEEEec
Q 031410 64 GRLGPGDIVFVRSP-VDPNKIVTKRIVGVEGDRVTYFK 100 (160)
Q Consensus 64 ~~~~~GDiVvf~~p-~~~~~~~iKRVv~~~Gd~v~~~~ 100 (160)
..|+.||+++|... ....-=.|--|..+.+++|.+.+
T Consensus 110 ~~P~~Gdl~V~~~g~~~~~yGHVAvV~~V~~~~i~i~E 147 (197)
T 3a2z_A 110 RAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAE 147 (197)
T ss_dssp SCCCTTCEEEECSCGGGTTTCEEEEEEEECSSEEEEEC
T ss_pred CCCCCCeEEEECCCCcCCCCccEEEEEEEcCCeEEEEe
Confidence 57999999999752 11122356667777788998864
No 15
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=35.05 E-value=1.1e+02 Score=21.28 Aligned_cols=26 Identities=12% Similarity=0.317 Sum_probs=16.7
Q ss_pred CCCCCcEEEEeeCCCCCceEEEEEEee
Q 031410 65 RLGPGDIVFVRSPVDPNKIVTKRIVGV 91 (160)
Q Consensus 65 ~~~~GDiVvf~~p~~~~~~~iKRVv~~ 91 (160)
.++.||.|+++..+ ..++++.|+..+
T Consensus 38 ~i~vGd~VLI~~~D-~~~PyVAki~~l 63 (163)
T 4dov_A 38 HIKVGQFVLIQGED-NKKPYVAKLIEL 63 (163)
T ss_dssp EEETTCEEEECCSS-SSCCEEEEEEEE
T ss_pred EEeeCCEEEEeCCc-ccCChhHHHHHH
Confidence 35667777765433 356688888776
No 16
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.42 E-value=38 Score=22.14 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=22.4
Q ss_pred EEEeCCCCccccCCCCcEEEEEecccC---CCCCCCCcEEEEeeC
Q 031410 36 TLVFGPSMLPTLNLTGDVILAEYVSHR---VGRLGPGDIVFVRSP 77 (160)
Q Consensus 36 ~~v~g~SM~Ptl~~~Gd~vlv~~~~~~---~~~~~~GDiVvf~~p 77 (160)
....|+.|.-...++|..++..- +-. .--+.+||+|++...
T Consensus 22 ~~~lgn~~f~V~l~nG~~~la~i-~GK~Rk~IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 22 LRTPGNNLHEVETAQGQRFLVSM-PSKYRKNIWIKRGDFLIVDPI 65 (111)
T ss_dssp EECCSSSEEEEECTTSCEEEEEC-CTTCCSCCCCCSSCEEEEEEC
T ss_pred EEeCCCCEEEEEeCCCCEEEEEe-chhhcccEEEcCCCEEEEEec
Confidence 33444554433222677777532 211 224789999999863
No 17
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=28.86 E-value=45 Score=22.84 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=21.8
Q ss_pred eEEEeCCCCccccCCCCcEEEEEecc--cCCCCCCCCcEEEEee
Q 031410 35 PTLVFGPSMLPTLNLTGDVILAEYVS--HRVGRLGPGDIVFVRS 76 (160)
Q Consensus 35 ~~~v~g~SM~Ptl~~~Gd~vlv~~~~--~~~~~~~~GDiVvf~~ 76 (160)
.....|+.|.-....+|..++..--. +..--+.+||+|++..
T Consensus 37 V~e~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~ 80 (143)
T 1d7q_A 37 VIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL 80 (143)
T ss_dssp EEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEEC
T ss_pred EEEEcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEee
Confidence 34444555543322266666653211 1123467888888875
No 18
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=27.98 E-value=21 Score=22.97 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=8.9
Q ss_pred CCCCCcEEEEee
Q 031410 65 RLGPGDIVFVRS 76 (160)
Q Consensus 65 ~~~~GDiVvf~~ 76 (160)
-+.+||.|++..
T Consensus 58 wI~~GD~VlVe~ 69 (102)
T 1jt8_A 58 WVREGDVVIVKP 69 (102)
T ss_dssp CCCSCEEEEECC
T ss_pred EecCCCEEEEEe
Confidence 467888888875
No 19
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=27.25 E-value=21 Score=21.91 Aligned_cols=12 Identities=42% Similarity=0.484 Sum_probs=9.7
Q ss_pred CCCCCcEEEEee
Q 031410 65 RLGPGDIVFVRS 76 (160)
Q Consensus 65 ~~~~GDiVvf~~ 76 (160)
.+..||.|.+..
T Consensus 53 ~Il~GD~V~ve~ 64 (79)
T 3i4o_A 53 RILPEDRVVVEL 64 (79)
T ss_dssp CCCTTCEEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 578888888876
No 20
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=26.71 E-value=43 Score=22.63 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=20.8
Q ss_pred EccCCcEEEEcCCCCCCCCCCcccceeCCC
Q 031410 111 VVPKGHVWIQGDNLYASRDSRQFGPVPYGL 140 (160)
Q Consensus 111 ~vp~~~~~v~gdn~~~s~DSR~~G~V~~~~ 140 (160)
...+|..-++.++. +..-+|-||||++|.
T Consensus 89 ~FddNA~Vlin~~g-~p~GTrI~GPVarEl 117 (132)
T 1vq8_K 89 KFEDNAAVIVDENE-DPRGTELKGPIAREV 117 (132)
T ss_dssp EESSCEEEEECTTS-CBSSSCBCSEECHHH
T ss_pred EeCCceEEEECCCC-CEeEEEEEcCcCHHH
Confidence 34456666666653 788899999998763
No 21
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=26.69 E-value=1.3e+02 Score=19.29 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=24.9
Q ss_pred CccccCCCCcEEEEEecccCCCCCCCCcEEEEeeCCCCCceEEEEEEeeCCC
Q 031410 43 MLPTLNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGD 94 (160)
Q Consensus 43 M~Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~iKRVv~~~Gd 94 (160)
|.| + .|+-.-+.-++. .-.|++||.|++. ...+.++|---..|-
T Consensus 45 mg~-l--sG~~rsLvvFSs-gYrP~r~D~Vv~~----Gk~y~Vtr~~~~ngk 88 (102)
T 2pp6_A 45 LGP-V--EGNGKNVVVFSG-NVIPRRGDRVVLR----GSEFTVTRIRRFNGK 88 (102)
T ss_dssp ----------CEEEEECCS-SCCCCTTCEEEET----TEEEEEEEEEEETTE
T ss_pred hCC-c--cCCceEEEEecC-CcccCCCCEEEEc----CcEEEEEEEEEECCc
Confidence 555 3 355444333332 3478999999997 567888887765553
No 22
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=26.32 E-value=1e+02 Score=20.32 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=13.0
Q ss_pred CCCCCCcEEEEeeCCCC
Q 031410 64 GRLGPGDIVFVRSPVDP 80 (160)
Q Consensus 64 ~~~~~GDiVvf~~p~~~ 80 (160)
..++.||+++|..-.+.
T Consensus 90 ~~L~~GD~~~F~~~~~~ 106 (130)
T 1wid_A 90 KNLRAGDVVSFSRSNGQ 106 (130)
T ss_dssp TTCCTTCEEEEEECCSS
T ss_pred cCCCCCCEEEEEEecCC
Confidence 57889999999875433
No 23
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=25.47 E-value=1.1e+02 Score=19.20 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=14.3
Q ss_pred CCCCcEEEEEecccCCCCCCCCcEEEEeeCCCCCceEEEEEEeeC
Q 031410 48 NLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVE 92 (160)
Q Consensus 48 ~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~iKRVv~~~ 92 (160)
.|-+|+|++.+... .+-..|-|++=.. ..+.+-...|+|+.
T Consensus 4 ~PL~DRVlVk~~e~--e~kT~gGI~LP~~--a~eK~~~G~VvAVG 44 (95)
T 3nx6_A 4 KPLHDRVVVKPIEA--DEVSAGGIVIPDS--AKEKSTKGEVVAIG 44 (95)
T ss_dssp CCCTTEEEEEEC-----------------------CEEEEEEEEC
T ss_pred EEcCCEEEEEEccc--cccccceEEeCcc--ccCCccccEEEEEC
Confidence 34789999987532 2234555555322 12234445555553
No 24
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=24.93 E-value=45 Score=22.71 Aligned_cols=28 Identities=18% Similarity=0.062 Sum_probs=20.4
Q ss_pred EccCCcEEEEcCCCCCCCCCCcccceeCC
Q 031410 111 VVPKGHVWIQGDNLYASRDSRQFGPVPYG 139 (160)
Q Consensus 111 ~vp~~~~~v~gdn~~~s~DSR~~G~V~~~ 139 (160)
..-+|..-++.++ .+..-+|-||||++|
T Consensus 94 ~FddNA~Vlin~~-g~p~GTrI~GPVarE 121 (137)
T 3u5e_V 94 YFEDNAGVIANPK-GEMKGSAITGPVGKE 121 (137)
T ss_dssp EESSCEEEEBCTT-CCBSSSCBCSCBCHH
T ss_pred EcCCceEEEECCC-CCEeeeEEEcchhHH
Confidence 3455666666665 478899999999875
No 25
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.63 E-value=40 Score=23.08 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=21.5
Q ss_pred EEccCCcEEEEcCCCCCCCCCCcccceeCCC
Q 031410 110 VVVPKGHVWIQGDNLYASRDSRQFGPVPYGL 140 (160)
Q Consensus 110 ~~vp~~~~~v~gdn~~~s~DSR~~G~V~~~~ 140 (160)
....+|..-++.++ .+..-+|-||||++|.
T Consensus 97 i~FddNA~VLin~~-g~p~GTRI~GPVarEl 126 (141)
T 3j21_J 97 VKFEDNAAVIVTPE-GVPRGTEIRGPVAREA 126 (141)
T ss_dssp ECCSSCEEEEBCTT-SCBCSSCCCSEECHHH
T ss_pred EEcCCcEEEEECCC-CCEeeeEEEccccHHH
Confidence 33455666666666 4788999999998763
No 26
>3pqh_A Gene product 138; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, viral protein; 1.29A {Bacteriophage PHI92}
Probab=23.16 E-value=78 Score=21.19 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=30.7
Q ss_pred CCcEEEEEecccCCCCCCCCcEEEEeeCCCCCceEEEE---EE-eeCCCEEEEec
Q 031410 50 TGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKR---IV-GVEGDRVTYFK 100 (160)
Q Consensus 50 ~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~iKR---Vv-~~~Gd~v~~~~ 100 (160)
.|=.+-++.-.|+.+.+ .|++.+|... .....+|| |+ -..++++.+.+
T Consensus 20 ~gVvIa~~d~ryR~~gL-~GEvaiY~~~--G~~I~Lk~~giIiid~~~~~v~v~a 71 (127)
T 3pqh_A 20 EKVIISNNKQTYASFDP-NGNISVYNTQ--GMKIDMTPNSIVLTDAGGGKLTLQG 71 (127)
T ss_dssp CCEEEEETTTEEEEECT-TSCEEEEETT--SCEEEEETTEEEEEETTTEEEEEET
T ss_pred ccEEEEeCCcccccCCC-CCcEEEEcCC--CCEEEEecCCEEEEecCCCeEEEec
Confidence 34444455555556678 9999999973 34555655 43 45677777764
No 27
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=22.73 E-value=1.8e+02 Score=20.13 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=26.7
Q ss_pred CCCCCcEEEEeeCCCCCceEEEEEEeeCCCEEEEec
Q 031410 65 RLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFK 100 (160)
Q Consensus 65 ~~~~GDiVvf~~p~~~~~~~iKRVv~~~Gd~v~~~~ 100 (160)
+++.|+.+.+..++ +..+.-+|..+.+|+|.+.-
T Consensus 112 ~~~~G~~~~~~~~~--G~~~~~~V~~v~~~~V~vD~ 145 (169)
T 4dt4_A 112 EPEIGAIMLFTAMD--GSEMPGVIREINGDSITVDF 145 (169)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEEETTEEEEEC
T ss_pred CCCCCcEEEEECCC--CCEEEEEEEEEcCCEEEEeC
Confidence 57889999888754 34567789999999998873
No 28
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=22.33 E-value=63 Score=21.59 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=23.5
Q ss_pred CcEEEEcCCC----CCCCCCCcccceeCCCeEEEEEE
Q 031410 115 GHVWIQGDNL----YASRDSRQFGPVPYGLIEGKAFF 147 (160)
Q Consensus 115 ~~~~v~gdn~----~~s~DSR~~G~V~~~~I~G~v~~ 147 (160)
-|||.+..+. .+..++|||=.||-+.|......
T Consensus 26 RHYWrLD~K~Itlf~~e~~~~~ykeIpL~eIl~v~~~ 62 (125)
T 2coa_A 26 RHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESA 62 (125)
T ss_dssp EEEEEECSSEEEEESSSSCSSCSEEEETTTCCEEEES
T ss_pred ceeeEecCCeEEEEecCCCCceeeeeehhHeeccccc
Confidence 4777777664 23467888888888888776644
Done!