Query 031411
Match_columns 160
No_of_seqs 113 out of 1444
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 13:43:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 8.8E-38 1.9E-42 208.2 15.4 145 9-154 3-147 (205)
2 KOG0078 GTP-binding protein SE 100.0 1.6E-34 3.4E-39 195.1 17.1 148 10-158 7-154 (207)
3 KOG0098 GTPase Rab2, small G p 100.0 2.5E-34 5.4E-39 190.0 15.0 144 12-156 3-146 (216)
4 KOG0092 GTPase Rab5/YPT51 and 100.0 1.2E-33 2.5E-38 187.9 15.9 145 13-158 3-147 (200)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.6E-33 3.4E-38 187.5 15.7 145 12-157 19-164 (221)
6 cd04121 Rab40 Rab40 subfamily. 100.0 2E-32 4.2E-37 188.3 18.8 144 12-157 3-146 (189)
7 KOG0087 GTPase Rab11/YPT3, sma 100.0 7.7E-33 1.7E-37 186.4 15.6 151 7-158 6-156 (222)
8 KOG0080 GTPase Rab18, small G 100.0 7.8E-33 1.7E-37 179.0 14.9 148 10-158 6-154 (209)
9 cd04120 Rab12 Rab12 subfamily. 100.0 6.2E-32 1.3E-36 187.4 18.2 143 16-159 1-146 (202)
10 KOG0093 GTPase Rab3, small G p 100.0 1.9E-32 4.2E-37 174.7 13.1 152 5-157 11-162 (193)
11 cd04131 Rnd Rnd subfamily. Th 100.0 1.7E-31 3.7E-36 182.2 17.8 140 15-156 1-153 (178)
12 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.9E-31 4.2E-36 182.4 18.0 143 12-156 2-157 (182)
13 KOG0394 Ras-related GTPase [Ge 100.0 3.9E-32 8.5E-37 179.3 13.3 141 13-153 7-152 (210)
14 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3.8E-31 8.3E-36 186.5 18.4 147 11-159 9-170 (232)
15 cd04122 Rab14 Rab14 subfamily. 100.0 5.5E-31 1.2E-35 177.8 18.3 141 15-156 2-142 (166)
16 KOG0079 GTP-binding protein H- 100.0 1.9E-32 4.1E-37 175.0 10.2 147 9-157 2-148 (198)
17 cd04133 Rop_like Rop subfamily 100.0 1E-30 2.3E-35 177.9 18.2 136 16-153 2-147 (176)
18 cd01867 Rab8_Rab10_Rab13_like 100.0 1.2E-30 2.7E-35 176.2 18.2 142 14-156 2-143 (167)
19 PF00071 Ras: Ras family; Int 100.0 1.6E-30 3.4E-35 174.7 17.1 141 17-158 1-141 (162)
20 cd04117 Rab15 Rab15 subfamily. 100.0 3.4E-30 7.3E-35 173.2 18.5 140 16-156 1-140 (161)
21 cd01865 Rab3 Rab3 subfamily. 100.0 3.7E-30 8.1E-35 173.6 18.6 140 16-156 2-141 (165)
22 KOG0086 GTPase Rab4, small G p 100.0 2.8E-31 6E-36 170.6 11.9 148 8-156 2-149 (214)
23 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 5.1E-30 1.1E-34 172.9 18.3 142 15-157 2-143 (166)
24 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.8E-30 1E-34 178.3 18.2 143 16-159 1-151 (201)
25 cd01875 RhoG RhoG subfamily. 100.0 5.2E-30 1.1E-34 176.8 18.2 139 15-155 3-154 (191)
26 KOG0095 GTPase Rab30, small G 100.0 5.4E-31 1.2E-35 168.8 11.8 145 10-155 2-146 (213)
27 cd01864 Rab19 Rab19 subfamily. 100.0 6.2E-30 1.3E-34 172.4 17.6 139 14-153 2-140 (165)
28 cd01868 Rab11_like Rab11-like. 100.0 1E-29 2.2E-34 171.3 18.3 142 14-156 2-143 (165)
29 cd01866 Rab2 Rab2 subfamily. 100.0 1.3E-29 2.9E-34 171.4 18.9 144 13-157 2-145 (168)
30 cd04110 Rab35 Rab35 subfamily. 100.0 1.9E-29 4.1E-34 175.1 19.3 144 12-157 3-146 (199)
31 cd01874 Cdc42 Cdc42 subfamily. 100.0 1E-29 2.2E-34 173.1 17.5 142 16-159 2-158 (175)
32 cd04128 Spg1 Spg1p. Spg1p (se 100.0 7.5E-30 1.6E-34 174.7 16.9 143 16-159 1-149 (182)
33 cd04127 Rab27A Rab27a subfamil 100.0 1.2E-29 2.6E-34 173.2 17.8 143 13-156 2-155 (180)
34 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.1E-29 2.4E-34 172.5 17.4 140 15-156 2-142 (172)
35 cd04113 Rab4 Rab4 subfamily. 100.0 1.6E-29 3.5E-34 169.6 17.9 142 16-158 1-142 (161)
36 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1E-29 2.3E-34 178.3 17.6 140 15-156 1-153 (222)
37 PLN03071 GTP-binding nuclear p 100.0 1.7E-29 3.7E-34 177.6 18.7 140 13-156 11-150 (219)
38 cd01871 Rac1_like Rac1-like su 100.0 1.3E-29 2.8E-34 172.4 17.3 142 16-159 2-158 (174)
39 cd04119 RJL RJL (RabJ-Like) su 100.0 2.1E-29 4.5E-34 169.8 17.6 140 16-156 1-145 (168)
40 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.4E-29 7.3E-34 169.8 18.3 140 17-156 2-143 (170)
41 PLN03110 Rab GTPase; Provision 100.0 4.4E-29 9.6E-34 175.2 19.2 146 11-157 8-153 (216)
42 cd04125 RabA_like RabA-like su 100.0 4.5E-29 9.8E-34 171.7 18.5 140 16-156 1-140 (188)
43 smart00175 RAB Rab subfamily o 100.0 4.3E-29 9.3E-34 167.8 17.9 142 16-158 1-142 (164)
44 cd04106 Rab23_lke Rab23-like s 100.0 3.6E-29 7.8E-34 168.0 17.4 139 16-156 1-141 (162)
45 cd04116 Rab9 Rab9 subfamily. 100.0 6.1E-29 1.3E-33 168.3 18.4 139 13-153 3-145 (170)
46 cd04136 Rap_like Rap-like subf 100.0 5.4E-29 1.2E-33 167.2 17.1 138 16-155 2-140 (163)
47 cd04115 Rab33B_Rab33A Rab33B/R 100.0 8.1E-29 1.7E-33 167.9 17.8 141 15-156 2-144 (170)
48 cd04109 Rab28 Rab28 subfamily. 100.0 7.7E-29 1.7E-33 173.9 18.1 143 16-159 1-149 (215)
49 cd04112 Rab26 Rab26 subfamily. 100.0 8.7E-29 1.9E-33 170.7 17.8 141 16-157 1-142 (191)
50 cd01861 Rab6 Rab6 subfamily. 100.0 1.2E-28 2.6E-33 165.3 17.9 140 16-156 1-140 (161)
51 PLN03108 Rab family protein; P 100.0 1.5E-28 3.2E-33 171.9 18.9 146 12-158 3-148 (210)
52 cd04111 Rab39 Rab39 subfamily. 100.0 1.1E-28 2.4E-33 172.5 18.1 142 15-157 2-145 (211)
53 cd04175 Rap1 Rap1 subgroup. T 100.0 1.3E-28 2.8E-33 165.8 17.0 139 16-156 2-141 (164)
54 cd04176 Rap2 Rap2 subgroup. T 100.0 1.7E-28 3.8E-33 164.9 17.6 140 15-156 1-141 (163)
55 PLN00023 GTP-binding protein; 100.0 8.9E-29 1.9E-33 179.7 17.1 146 10-155 16-191 (334)
56 PTZ00369 Ras-like protein; Pro 100.0 2.2E-28 4.8E-33 168.4 18.0 139 15-155 5-144 (189)
57 cd04126 Rab20 Rab20 subfamily. 100.0 1.7E-28 3.6E-33 172.1 17.4 132 16-152 1-150 (220)
58 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.4E-28 2.9E-33 170.5 16.8 141 16-157 1-169 (202)
59 cd04124 RabL2 RabL2 subfamily. 100.0 2.9E-28 6.3E-33 163.8 17.8 139 16-159 1-141 (161)
60 cd01860 Rab5_related Rab5-rela 100.0 5.7E-28 1.2E-32 162.3 18.2 142 15-157 1-142 (163)
61 KOG0091 GTPase Rab39, small G 100.0 1.7E-29 3.6E-34 164.0 10.1 146 13-159 6-154 (213)
62 cd04118 Rab24 Rab24 subfamily. 100.0 6.4E-28 1.4E-32 166.5 18.6 140 16-156 1-144 (193)
63 cd04134 Rho3 Rho3 subfamily. 100.0 3.2E-28 6.9E-33 167.6 17.0 141 17-159 2-157 (189)
64 cd00877 Ran Ran (Ras-related n 100.0 7.9E-28 1.7E-32 162.5 18.4 140 16-159 1-142 (166)
65 cd04132 Rho4_like Rho4-like su 100.0 2.7E-28 5.8E-33 167.6 16.2 136 16-153 1-141 (187)
66 cd04130 Wrch_1 Wrch-1 subfamil 100.0 4.8E-28 1E-32 164.5 17.3 136 16-153 1-148 (173)
67 cd04144 Ras2 Ras2 subfamily. 100.0 2.8E-28 6.1E-33 168.0 15.9 139 17-157 1-142 (190)
68 cd04145 M_R_Ras_like M-Ras/R-R 100.0 9E-28 1.9E-32 161.4 17.4 140 15-156 2-142 (164)
69 cd01892 Miro2 Miro2 subfamily. 100.0 7.2E-28 1.6E-32 163.1 16.9 144 13-159 2-149 (169)
70 cd04138 H_N_K_Ras_like H-Ras/N 100.0 9.6E-28 2.1E-32 160.7 17.3 138 16-156 2-140 (162)
71 smart00173 RAS Ras subfamily o 100.0 7.5E-28 1.6E-32 161.9 16.7 139 16-156 1-140 (164)
72 cd04140 ARHI_like ARHI subfami 100.0 1.1E-27 2.4E-32 161.5 17.4 142 16-159 2-148 (165)
73 cd01863 Rab18 Rab18 subfamily. 100.0 1.9E-27 4.1E-32 159.5 18.3 140 16-157 1-141 (161)
74 cd04142 RRP22 RRP22 subfamily. 100.0 8.4E-28 1.8E-32 166.5 17.1 143 16-159 1-157 (198)
75 smart00174 RHO Rho (Ras homolo 100.0 7.9E-28 1.7E-32 163.3 16.4 134 18-153 1-146 (174)
76 PLN03118 Rab family protein; P 100.0 2.8E-27 6.1E-32 165.5 19.7 146 9-156 8-155 (211)
77 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.2E-27 4.7E-32 159.7 17.4 138 16-155 1-141 (164)
78 cd04123 Rab21 Rab21 subfamily. 100.0 4.1E-27 8.9E-32 157.6 18.0 140 16-156 1-140 (162)
79 cd01862 Rab7 Rab7 subfamily. 100.0 3.7E-27 8.1E-32 159.5 17.7 136 16-152 1-140 (172)
80 cd04143 Rhes_like Rhes_like su 100.0 1.9E-27 4.1E-32 169.6 16.7 142 16-159 1-154 (247)
81 smart00176 RAN Ran (Ras-relate 100.0 2.9E-27 6.4E-32 163.8 17.0 133 21-157 1-133 (200)
82 cd00154 Rab Rab family. Rab G 100.0 4.9E-27 1.1E-31 156.3 17.5 141 16-157 1-141 (159)
83 cd04114 Rab30 Rab30 subfamily. 100.0 1.3E-26 2.8E-31 156.6 19.4 147 12-159 4-152 (169)
84 cd04103 Centaurin_gamma Centau 100.0 4.6E-27 1E-31 157.5 16.4 137 16-159 1-142 (158)
85 cd04135 Tc10 TC10 subfamily. 100.0 5.9E-27 1.3E-31 159.0 17.2 136 16-153 1-148 (174)
86 cd04146 RERG_RasL11_like RERG/ 100.0 2.9E-27 6.2E-32 159.4 15.3 138 17-156 1-141 (165)
87 KOG0081 GTPase Rab27, small G 100.0 1.4E-29 2.9E-34 163.8 3.7 149 9-158 3-161 (219)
88 cd01873 RhoBTB RhoBTB subfamil 100.0 7.1E-27 1.5E-31 161.5 17.4 139 15-156 2-174 (195)
89 cd04177 RSR1 RSR1 subgroup. R 100.0 1E-26 2.2E-31 157.2 17.4 135 16-152 2-137 (168)
90 KOG0088 GTPase Rab21, small G 100.0 3.1E-28 6.6E-33 157.5 8.5 149 9-158 7-155 (218)
91 cd01870 RhoA_like RhoA-like su 100.0 2.3E-26 5E-31 156.2 17.0 143 15-159 1-158 (175)
92 KOG0097 GTPase Rab14, small G 100.0 3.3E-27 7.1E-32 150.3 11.8 148 10-158 6-153 (215)
93 cd04148 RGK RGK subfamily. Th 99.9 2.4E-26 5.2E-31 161.8 17.1 138 16-156 1-141 (221)
94 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 6.4E-27 1.4E-31 157.8 12.4 133 18-156 2-138 (164)
95 KOG0393 Ras-related small GTPa 99.9 4.6E-27 9.9E-32 159.4 10.7 140 13-154 2-154 (198)
96 cd04147 Ras_dva Ras-dva subfam 99.9 1E-25 2.2E-30 156.3 16.0 142 17-159 1-146 (198)
97 cd00876 Ras Ras family. The R 99.9 1.3E-25 2.8E-30 150.1 15.8 138 17-156 1-139 (160)
98 cd04149 Arf6 Arf6 subfamily. 99.9 1.1E-25 2.3E-30 152.4 13.9 126 15-148 9-135 (168)
99 cd04139 RalA_RalB RalA/RalB su 99.9 5.8E-25 1.2E-29 147.6 17.2 140 16-157 1-141 (164)
100 PTZ00132 GTP-binding nuclear p 99.9 9.2E-25 2E-29 153.2 18.8 143 10-156 4-146 (215)
101 cd04129 Rho2 Rho2 subfamily. 99.9 5.5E-25 1.2E-29 151.3 17.1 137 15-153 1-147 (187)
102 KOG0083 GTPase Rab26/Rab37, sm 99.9 1.3E-27 2.7E-32 150.7 3.0 138 19-157 1-139 (192)
103 cd00157 Rho Rho (Ras homology) 99.9 1.2E-24 2.7E-29 147.0 17.7 139 16-156 1-151 (171)
104 cd01893 Miro1 Miro1 subfamily. 99.9 5E-25 1.1E-29 148.7 15.5 118 16-136 1-119 (166)
105 smart00177 ARF ARF-like small 99.9 3.2E-25 6.9E-30 151.0 14.7 115 15-134 13-128 (175)
106 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 4.9E-25 1.1E-29 151.0 15.4 118 15-133 3-122 (183)
107 cd04150 Arf1_5_like Arf1-Arf5- 99.9 1.4E-25 3.1E-30 150.4 12.1 114 16-134 1-115 (159)
108 KOG0395 Ras-related GTPase [Ge 99.9 3.8E-25 8.3E-30 152.4 14.5 143 14-158 2-145 (196)
109 cd04158 ARD1 ARD1 subfamily. 99.9 5.7E-25 1.2E-29 148.9 14.9 125 17-149 1-126 (169)
110 PLN00223 ADP-ribosylation fact 99.9 5.7E-25 1.2E-29 150.5 15.0 116 14-134 16-132 (181)
111 cd04137 RheB Rheb (Ras Homolog 99.9 1.2E-24 2.7E-29 148.4 16.6 138 16-155 2-140 (180)
112 cd04154 Arl2 Arl2 subfamily. 99.9 8.3E-25 1.8E-29 148.6 14.6 130 11-148 10-140 (173)
113 cd04161 Arl2l1_Arl13_like Arl2 99.9 3.8E-25 8.2E-30 149.5 12.9 115 17-136 1-116 (167)
114 cd04157 Arl6 Arl6 subfamily. 99.9 4.4E-25 9.5E-30 148.0 12.5 115 17-135 1-119 (162)
115 PTZ00133 ADP-ribosylation fact 99.9 1.1E-24 2.3E-29 149.3 13.1 115 15-134 17-132 (182)
116 PF00025 Arf: ADP-ribosylation 99.9 9.1E-24 2E-28 143.8 13.5 119 12-135 11-130 (175)
117 cd04160 Arfrp1 Arfrp1 subfamil 99.9 9.8E-24 2.1E-28 142.2 13.6 125 17-148 1-132 (167)
118 KOG0073 GTP-binding ADP-ribosy 99.9 7.1E-24 1.5E-28 137.8 12.2 140 12-156 13-156 (185)
119 PF08477 Miro: Miro-like prote 99.9 9.1E-24 2E-28 135.0 12.7 114 17-131 1-119 (119)
120 cd04156 ARLTS1 ARLTS1 subfamil 99.9 5.2E-24 1.1E-28 142.6 11.8 114 17-134 1-115 (160)
121 smart00178 SAR Sar1p-like memb 99.9 2.4E-23 5.2E-28 142.8 15.0 126 13-146 15-141 (184)
122 KOG4252 GTP-binding protein [S 99.9 4.9E-26 1.1E-30 150.1 1.5 147 9-157 14-160 (246)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.2E-23 2.7E-28 140.6 13.0 113 17-134 1-114 (158)
124 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.2E-23 2.7E-28 143.0 12.9 115 15-134 15-130 (174)
125 cd00879 Sar1 Sar1 subfamily. 99.9 4.3E-23 9.3E-28 142.0 15.3 129 13-149 17-146 (190)
126 cd04151 Arl1 Arl1 subfamily. 99.9 8.9E-23 1.9E-27 136.6 14.6 113 17-134 1-114 (158)
127 KOG0070 GTP-binding ADP-ribosy 99.9 2.6E-23 5.7E-28 138.0 10.1 131 13-148 15-146 (181)
128 cd04159 Arl10_like Arl10-like 99.9 1.1E-22 2.3E-27 135.4 12.9 113 18-134 2-115 (159)
129 KOG0075 GTP-binding ADP-ribosy 99.9 1.1E-23 2.3E-28 134.7 6.2 142 14-159 19-165 (186)
130 COG1100 GTPase SAR1 and relate 99.9 5.5E-22 1.2E-26 139.3 15.2 121 16-136 6-127 (219)
131 TIGR00231 small_GTP small GTP- 99.9 6E-22 1.3E-26 131.4 14.6 119 16-134 2-122 (161)
132 KOG0071 GTP-binding ADP-ribosy 99.9 3.1E-22 6.8E-27 127.1 10.1 130 15-149 17-147 (180)
133 cd04155 Arl3 Arl3 subfamily. 99.9 2.8E-21 6.2E-26 131.0 14.9 119 11-134 10-129 (173)
134 PTZ00099 rab6; Provisional 99.9 4.7E-21 1E-25 130.4 15.4 121 38-159 3-125 (176)
135 cd01898 Obg Obg subfamily. Th 99.9 1.7E-21 3.8E-26 131.5 13.1 140 17-159 2-154 (170)
136 cd01890 LepA LepA subfamily. 99.9 2.4E-21 5.1E-26 132.0 12.2 114 17-134 2-133 (179)
137 cd01891 TypA_BipA TypA (tyrosi 99.9 1.7E-21 3.6E-26 134.7 11.1 129 16-148 3-145 (194)
138 cd01897 NOG NOG1 is a nucleola 99.9 6.1E-21 1.3E-25 128.7 13.2 137 17-159 2-151 (168)
139 cd01878 HflX HflX subfamily. 99.9 4.2E-21 9.2E-26 133.6 12.5 120 13-134 39-167 (204)
140 cd04105 SR_beta Signal recogni 99.9 3.3E-21 7.2E-26 134.1 11.8 118 17-135 2-124 (203)
141 cd04171 SelB SelB subfamily. 99.9 5.2E-21 1.1E-25 128.3 12.2 136 17-159 2-149 (164)
142 PRK12299 obgE GTPase CgtA; Rev 99.9 8E-21 1.7E-25 140.6 14.2 142 16-159 159-311 (335)
143 KOG1673 Ras GTPases [General f 99.9 7.2E-21 1.6E-25 123.0 9.6 147 10-157 15-165 (205)
144 TIGR03156 GTP_HflX GTP-binding 99.8 3.8E-20 8.2E-25 138.0 13.8 119 13-133 187-314 (351)
145 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 2.3E-20 5.1E-25 125.7 11.4 114 17-134 2-116 (168)
146 cd00882 Ras_like_GTPase Ras-li 99.8 9.9E-20 2.2E-24 119.5 14.0 115 20-135 1-117 (157)
147 TIGR00450 mnmE_trmE_thdF tRNA 99.8 1.6E-19 3.4E-24 138.2 15.5 115 13-134 201-324 (442)
148 TIGR02528 EutP ethanolamine ut 99.8 1.9E-20 4.2E-25 123.1 9.2 119 17-159 2-128 (142)
149 KOG3883 Ras family small GTPas 99.8 3E-19 6.6E-24 115.2 14.1 137 15-153 9-150 (198)
150 cd01879 FeoB Ferrous iron tran 99.8 1.9E-19 4E-24 120.1 12.9 129 20-158 1-139 (158)
151 TIGR02729 Obg_CgtA Obg family 99.8 1.8E-19 3.9E-24 133.3 13.9 141 16-159 158-312 (329)
152 PRK04213 GTP-binding protein; 99.8 2E-20 4.4E-25 129.9 7.9 126 14-152 8-158 (201)
153 cd01881 Obg_like The Obg-like 99.8 2.1E-19 4.6E-24 121.8 10.8 112 20-133 1-133 (176)
154 KOG0074 GTP-binding ADP-ribosy 99.8 1.6E-19 3.5E-24 115.0 9.4 117 13-133 15-132 (185)
155 TIGR03598 GTPase_YsxC ribosome 99.8 3.5E-19 7.5E-24 121.6 11.6 141 12-159 15-173 (179)
156 PF02421 FeoB_N: Ferrous iron 99.8 1.1E-19 2.5E-24 120.3 8.5 131 16-156 1-139 (156)
157 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.7E-18 3.7E-23 115.1 13.3 112 16-135 2-122 (157)
158 TIGR01393 lepA GTP-binding pro 99.8 6.8E-19 1.5E-23 139.0 12.9 116 15-134 3-136 (595)
159 PRK05291 trmE tRNA modificatio 99.8 9.3E-19 2E-23 134.5 13.2 113 14-134 214-335 (449)
160 TIGR00487 IF-2 translation ini 99.8 1.8E-18 4E-23 136.1 14.7 118 12-134 84-201 (587)
161 cd00881 GTP_translation_factor 99.8 1.6E-18 3.4E-23 118.7 12.7 112 17-134 1-128 (189)
162 PRK12297 obgE GTPase CgtA; Rev 99.8 4.5E-18 9.9E-23 129.1 15.5 137 17-159 160-310 (424)
163 cd01889 SelB_euk SelB subfamil 99.8 9.5E-19 2.1E-23 120.7 10.5 114 16-133 1-133 (192)
164 PRK15494 era GTPase Era; Provi 99.8 1.7E-18 3.7E-23 128.8 12.5 136 13-159 50-199 (339)
165 PRK03003 GTP-binding protein D 99.8 3.6E-18 7.9E-23 132.2 14.4 114 14-133 37-159 (472)
166 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 1.4E-18 3.1E-23 115.8 10.3 141 13-157 8-148 (216)
167 TIGR00436 era GTP-binding prot 99.8 2.5E-18 5.3E-23 124.5 12.5 134 17-159 2-147 (270)
168 PRK03003 GTP-binding protein D 99.8 2.8E-18 6.1E-23 132.9 12.6 115 14-134 210-336 (472)
169 PRK11058 GTPase HflX; Provisio 99.8 2.8E-18 6.1E-23 130.7 12.1 118 15-133 197-322 (426)
170 PRK05306 infB translation init 99.8 3.5E-18 7.6E-23 137.6 13.0 114 12-134 287-403 (787)
171 COG2229 Predicted GTPase [Gene 99.8 8.6E-18 1.9E-22 111.8 12.5 131 12-148 7-149 (187)
172 cd01895 EngA2 EngA2 subfamily. 99.8 1.7E-17 3.7E-22 111.9 13.8 114 15-134 2-127 (174)
173 PRK12298 obgE GTPase CgtA; Rev 99.8 9.3E-18 2E-22 126.6 13.6 141 16-159 160-316 (390)
174 cd04168 TetM_like Tet(M)-like 99.8 6.8E-18 1.5E-22 119.9 12.2 126 17-148 1-144 (237)
175 PRK12296 obgE GTPase CgtA; Rev 99.8 4.5E-18 9.8E-23 130.8 12.0 118 15-134 159-298 (500)
176 TIGR00475 selB selenocysteine- 99.8 9.5E-18 2.1E-22 132.4 13.1 126 16-150 1-134 (581)
177 KOG0077 Vesicle coat complex C 99.8 1.8E-18 3.8E-23 113.0 7.3 120 14-138 19-139 (193)
178 cd01885 EF2 EF2 (for archaea a 99.8 1.3E-17 2.7E-22 117.2 12.0 121 17-141 2-146 (222)
179 KOG0076 GTP-binding ADP-ribosy 99.8 9.3E-19 2E-23 115.1 5.5 129 14-146 16-152 (197)
180 CHL00189 infB translation init 99.8 8.3E-18 1.8E-22 134.5 11.6 116 12-134 241-361 (742)
181 TIGR00483 EF-1_alpha translati 99.8 1.5E-17 3.3E-22 127.4 12.3 137 12-152 4-176 (426)
182 PRK05433 GTP-binding protein L 99.8 1.3E-17 2.9E-22 131.8 12.2 117 14-134 6-140 (600)
183 TIGR03594 GTPase_EngA ribosome 99.8 6.8E-17 1.5E-21 124.0 15.8 115 13-133 170-296 (429)
184 cd01894 EngA1 EngA1 subfamily. 99.8 2.2E-17 4.8E-22 109.8 11.4 111 19-135 1-120 (157)
185 PRK12317 elongation factor 1-a 99.8 1.9E-17 4.2E-22 126.8 12.6 137 12-152 3-174 (425)
186 PRK00093 GTP-binding protein D 99.8 3.9E-17 8.4E-22 125.6 14.3 110 16-133 2-122 (435)
187 PRK00454 engB GTP-binding prot 99.7 2.5E-17 5.5E-22 113.7 10.9 139 12-159 21-177 (196)
188 PRK10218 GTP-binding protein; 99.7 7.1E-17 1.5E-21 127.4 14.7 131 14-148 4-148 (607)
189 cd01850 CDC_Septin CDC/Septin. 99.7 3.1E-17 6.7E-22 118.9 11.6 138 14-156 3-180 (276)
190 cd04166 CysN_ATPS CysN_ATPS su 99.7 3.5E-17 7.5E-22 114.3 11.2 138 17-159 1-177 (208)
191 PF00009 GTP_EFTU: Elongation 99.7 9.9E-18 2.1E-22 115.3 8.2 116 14-133 2-135 (188)
192 cd04169 RF3 RF3 subfamily. Pe 99.7 7.1E-17 1.5E-21 116.5 12.9 114 16-135 3-138 (267)
193 PF09439 SRPRB: Signal recogni 99.7 3.6E-18 7.8E-23 115.5 5.4 117 15-135 3-127 (181)
194 cd01896 DRG The developmentall 99.7 2.1E-16 4.5E-21 112.1 14.6 83 17-101 2-91 (233)
195 PRK15467 ethanolamine utilizat 99.7 1.3E-17 2.9E-22 111.7 7.7 113 17-152 3-119 (158)
196 cd01888 eIF2_gamma eIF2-gamma 99.7 3.4E-17 7.3E-22 114.0 9.6 142 16-159 1-182 (203)
197 cd04167 Snu114p Snu114p subfam 99.7 1.2E-16 2.6E-21 112.0 12.5 113 17-133 2-136 (213)
198 PRK00089 era GTPase Era; Revie 99.7 8.6E-17 1.9E-21 117.7 12.2 138 14-159 4-154 (292)
199 cd04163 Era Era subfamily. Er 99.7 2E-16 4.4E-21 105.8 12.9 114 15-133 3-124 (168)
200 PRK09554 feoB ferrous iron tra 99.7 3E-16 6.4E-21 127.0 15.5 130 15-154 3-144 (772)
201 TIGR01394 TypA_BipA GTP-bindin 99.7 9.4E-17 2E-21 126.7 12.2 126 17-148 3-144 (594)
202 TIGR03594 GTPase_EngA ribosome 99.7 2E-16 4.4E-21 121.4 13.6 110 17-134 1-121 (429)
203 cd01886 EF-G Elongation factor 99.7 2.1E-16 4.6E-21 114.2 12.8 127 17-149 1-145 (270)
204 TIGR00437 feoB ferrous iron tr 99.7 1.4E-16 3.1E-21 125.9 12.7 128 22-159 1-138 (591)
205 PRK09518 bifunctional cytidyla 99.7 1.7E-16 3.8E-21 128.2 12.3 115 14-134 449-575 (712)
206 PRK00093 GTP-binding protein D 99.7 6.7E-16 1.5E-20 118.7 14.4 115 13-133 171-297 (435)
207 KOG4423 GTP-binding protein-li 99.7 1.8E-19 3.8E-24 119.8 -5.0 142 12-153 22-168 (229)
208 COG1159 Era GTPase [General fu 99.7 1.7E-16 3.6E-21 113.3 9.4 115 14-135 5-129 (298)
209 PRK09518 bifunctional cytidyla 99.7 1.7E-15 3.7E-20 122.5 16.1 116 12-133 272-396 (712)
210 cd00880 Era_like Era (E. coli 99.7 4.3E-16 9.3E-21 103.2 10.6 110 20-134 1-118 (163)
211 KOG1707 Predicted Ras related/ 99.7 1.3E-16 2.8E-21 122.1 8.7 124 13-138 7-133 (625)
212 cd01883 EF1_alpha Eukaryotic e 99.7 3.3E-16 7.1E-21 110.2 10.1 113 17-133 1-150 (219)
213 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 4E-16 8.7E-21 109.8 10.5 115 17-133 1-124 (232)
214 cd01884 EF_Tu EF-Tu subfamily. 99.7 1.1E-15 2.4E-20 105.6 12.0 113 15-133 2-131 (195)
215 TIGR00491 aIF-2 translation in 99.7 3.9E-16 8.5E-21 122.9 10.8 112 16-134 5-135 (590)
216 PF01926 MMR_HSR1: 50S ribosom 99.7 1.8E-15 3.9E-20 96.3 11.9 106 17-129 1-116 (116)
217 COG0486 ThdF Predicted GTPase 99.7 1.6E-15 3.4E-20 114.1 13.1 135 13-159 215-359 (454)
218 COG1084 Predicted GTPase [Gene 99.7 1.1E-15 2.4E-20 110.3 11.8 119 11-133 164-293 (346)
219 cd04170 EF-G_bact Elongation f 99.7 6.8E-16 1.5E-20 111.7 10.9 113 17-135 1-131 (268)
220 cd01876 YihA_EngB The YihA (En 99.7 1E-15 2.2E-20 102.6 10.9 108 17-133 1-123 (170)
221 PRK04004 translation initiatio 99.7 1E-15 2.3E-20 120.8 12.4 113 14-133 5-136 (586)
222 PRK13351 elongation factor G; 99.7 1.4E-15 3E-20 122.7 11.7 128 14-147 7-152 (687)
223 PRK00741 prfC peptide chain re 99.6 3.5E-15 7.5E-20 116.5 12.4 118 13-136 8-147 (526)
224 TIGR00503 prfC peptide chain r 99.6 2.9E-15 6.3E-20 117.0 11.7 132 12-147 8-159 (527)
225 KOG1489 Predicted GTP-binding 99.6 6E-15 1.3E-19 106.0 12.2 140 15-159 196-350 (366)
226 TIGR00485 EF-Tu translation el 99.6 4.7E-15 1E-19 112.7 12.2 137 10-152 7-162 (394)
227 PRK10512 selenocysteinyl-tRNA- 99.6 5.3E-15 1.2E-19 117.4 12.7 135 17-159 2-149 (614)
228 PRK12735 elongation factor Tu; 99.6 5.9E-15 1.3E-19 112.1 12.2 136 10-151 7-161 (396)
229 cd04104 p47_IIGP_like p47 (47- 99.6 6.1E-15 1.3E-19 102.2 11.3 111 15-133 1-120 (197)
230 PRK12736 elongation factor Tu; 99.6 6.4E-15 1.4E-19 111.9 12.3 135 12-152 9-162 (394)
231 TIGR00484 EF-G translation elo 99.6 7.4E-15 1.6E-19 118.5 13.3 117 14-136 9-143 (689)
232 PLN03126 Elongation factor Tu; 99.6 9.7E-15 2.1E-19 112.8 13.0 118 11-134 77-211 (478)
233 PRK04000 translation initiatio 99.6 4.5E-15 9.7E-20 113.2 10.6 147 10-159 4-184 (411)
234 COG1160 Predicted GTPases [Gen 99.6 2E-15 4.2E-20 113.3 8.2 110 16-133 4-125 (444)
235 TIGR03680 eif2g_arch translati 99.6 3.7E-15 7.9E-20 113.6 9.6 135 14-150 3-165 (406)
236 CHL00071 tufA elongation facto 99.6 1.3E-14 2.8E-19 110.7 12.4 135 11-151 8-161 (409)
237 KOG0072 GTP-binding ADP-ribosy 99.6 7.8E-16 1.7E-20 98.6 4.8 118 13-135 16-134 (182)
238 COG0218 Predicted GTPase [Gene 99.6 1.3E-14 2.8E-19 98.6 10.7 115 11-134 20-149 (200)
239 PLN00043 elongation factor 1-a 99.6 4.7E-15 1E-19 113.9 8.6 135 12-152 4-182 (447)
240 COG2262 HflX GTPases [General 99.6 4.7E-14 1E-18 104.7 12.9 124 9-133 186-317 (411)
241 PRK05124 cysN sulfate adenylyl 99.6 3.2E-14 7E-19 110.1 12.5 118 12-134 24-174 (474)
242 TIGR00490 aEF-2 translation el 99.6 2.7E-14 5.8E-19 115.6 11.6 129 12-144 16-162 (720)
243 PRK12739 elongation factor G; 99.6 5.3E-14 1.1E-18 113.6 13.0 118 13-136 6-141 (691)
244 KOG1145 Mitochondrial translat 99.6 2.7E-14 5.9E-19 109.0 10.2 135 2-141 140-274 (683)
245 PRK00049 elongation factor Tu; 99.6 8.8E-14 1.9E-18 105.7 13.0 118 11-134 8-142 (396)
246 COG1160 Predicted GTPases [Gen 99.6 2.1E-13 4.5E-18 102.6 14.4 116 14-135 177-304 (444)
247 KOG0090 Signal recognition par 99.6 1.6E-14 3.4E-19 98.4 7.6 115 16-135 39-160 (238)
248 TIGR02034 CysN sulfate adenyly 99.5 4.7E-14 1E-18 107.5 10.1 114 16-134 1-147 (406)
249 KOG0462 Elongation factor-type 99.5 1.4E-13 2.9E-18 105.2 12.4 144 12-159 57-218 (650)
250 PLN03127 Elongation factor Tu; 99.5 1.4E-13 3.1E-18 105.8 12.6 118 11-134 57-191 (447)
251 KOG3905 Dynein light intermedi 99.5 8.2E-14 1.8E-18 100.7 10.4 149 9-160 46-272 (473)
252 PRK05506 bifunctional sulfate 99.5 5.5E-14 1.2E-18 112.5 10.2 118 12-134 21-171 (632)
253 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 2.3E-13 4.9E-18 94.2 12.0 114 16-133 1-129 (196)
254 COG0370 FeoB Fe2+ transport sy 99.5 2.3E-13 5.1E-18 106.5 13.0 132 15-156 3-142 (653)
255 PTZ00141 elongation factor 1- 99.5 2.4E-13 5.2E-18 104.6 12.7 117 12-133 4-158 (446)
256 KOG1423 Ras-like GTPase ERA [C 99.5 1.9E-13 4.1E-18 98.0 10.9 124 6-133 63-198 (379)
257 COG1163 DRG Predicted GTPase [ 99.5 6.7E-13 1.5E-17 95.9 13.0 99 12-112 60-166 (365)
258 TIGR00991 3a0901s02IAP34 GTP-b 99.5 8.3E-13 1.8E-17 96.1 13.7 122 10-133 33-166 (313)
259 PRK00007 elongation factor G; 99.5 3.8E-13 8.2E-18 108.6 13.2 117 13-135 8-142 (693)
260 cd01899 Ygr210 Ygr210 subfamil 99.5 2.6E-13 5.6E-18 100.0 11.1 82 18-99 1-111 (318)
261 COG0536 Obg Predicted GTPase [ 99.5 1.6E-13 3.5E-18 99.7 9.5 117 16-133 160-288 (369)
262 cd01853 Toc34_like Toc34-like 99.5 2.1E-12 4.5E-17 92.4 14.1 122 10-133 26-162 (249)
263 COG0481 LepA Membrane GTPase L 99.5 6.1E-13 1.3E-17 100.3 11.8 145 11-159 5-169 (603)
264 smart00010 small_GTPase Small 99.5 6.3E-13 1.4E-17 85.0 10.3 105 16-150 1-106 (124)
265 cd04165 GTPBP1_like GTPBP1-lik 99.5 6.7E-13 1.5E-17 93.6 10.8 111 17-133 1-151 (224)
266 COG0532 InfB Translation initi 99.5 4.6E-13 1E-17 102.2 10.0 115 16-137 6-124 (509)
267 PF10662 PduV-EutP: Ethanolami 99.5 3.2E-13 7E-18 87.9 7.8 114 16-153 2-120 (143)
268 PRK12740 elongation factor G; 99.5 6.3E-13 1.4E-17 107.2 11.1 109 21-135 1-127 (668)
269 PLN00116 translation elongatio 99.4 1.2E-12 2.7E-17 107.6 11.6 119 11-133 15-163 (843)
270 PF00735 Septin: Septin; Inte 99.4 1.7E-12 3.8E-17 94.2 10.4 116 14-133 3-155 (281)
271 PRK07560 elongation factor EF- 99.4 1.1E-12 2.4E-17 106.6 10.4 120 12-135 17-154 (731)
272 PTZ00416 elongation factor 2; 99.4 1.8E-12 3.9E-17 106.4 11.5 118 12-133 16-157 (836)
273 KOG1707 Predicted Ras related/ 99.4 9.7E-12 2.1E-16 95.8 12.9 140 9-153 419-558 (625)
274 cd00066 G-alpha G protein alph 99.4 4.6E-12 1E-16 93.7 10.9 70 63-132 160-240 (317)
275 PF05783 DLIC: Dynein light in 99.4 7.4E-12 1.6E-16 96.4 12.1 98 13-113 23-127 (472)
276 KOG1191 Mitochondrial GTPase [ 99.4 2E-12 4.2E-17 97.9 8.7 121 15-137 268-406 (531)
277 COG5256 TEF1 Translation elong 99.4 4.9E-12 1.1E-16 94.1 9.9 130 11-144 3-168 (428)
278 PF04548 AIG1: AIG1 family; I 99.4 9.7E-12 2.1E-16 87.1 10.7 114 16-133 1-129 (212)
279 COG3596 Predicted GTPase [Gene 99.4 1.2E-12 2.7E-17 92.7 6.2 119 12-134 36-162 (296)
280 smart00275 G_alpha G protein a 99.4 6.5E-12 1.4E-16 93.7 10.3 70 64-133 184-264 (342)
281 PTZ00258 GTP-binding protein; 99.4 1.3E-11 2.8E-16 93.0 11.8 86 13-98 19-126 (390)
282 PTZ00327 eukaryotic translatio 99.3 5.8E-12 1.3E-16 97.0 8.6 145 13-159 32-216 (460)
283 PRK09601 GTP-binding protein Y 99.3 9.3E-11 2E-15 87.5 13.2 83 16-98 3-107 (364)
284 COG0480 FusA Translation elong 99.3 3.9E-11 8.4E-16 96.2 11.4 133 12-149 7-157 (697)
285 PRK09602 translation-associate 99.3 6.7E-11 1.4E-15 89.8 10.4 83 16-98 2-113 (396)
286 PRK09866 hypothetical protein; 99.3 1.7E-10 3.6E-15 90.9 12.6 82 64-148 230-316 (741)
287 TIGR00993 3a0901s04IAP86 chlor 99.2 1.9E-10 4.2E-15 90.8 12.6 122 11-134 114-250 (763)
288 COG1217 TypA Predicted membran 99.2 6.9E-11 1.5E-15 89.3 9.3 131 16-152 6-152 (603)
289 COG5019 CDC3 Septin family pro 99.2 1.9E-10 4.2E-15 84.6 11.3 139 13-156 21-199 (373)
290 PF05049 IIGP: Interferon-indu 99.2 3.7E-11 8E-16 89.7 7.2 112 14-132 34-153 (376)
291 KOG0468 U5 snRNP-specific prot 99.2 1.2E-10 2.6E-15 91.2 10.1 119 10-132 123-261 (971)
292 KOG3886 GTP-binding protein [S 99.2 3.2E-11 6.9E-16 83.6 6.2 117 15-133 4-129 (295)
293 cd01882 BMS1 Bms1. Bms1 is an 99.2 2.5E-10 5.5E-15 80.7 10.7 109 13-133 37-146 (225)
294 KOG1490 GTP-binding protein CR 99.2 5.1E-11 1.1E-15 90.6 7.4 123 8-133 161-294 (620)
295 PF00350 Dynamin_N: Dynamin fa 99.2 6.3E-11 1.4E-15 79.9 7.2 63 65-130 102-168 (168)
296 COG2895 CysN GTPases - Sulfate 99.2 4.3E-10 9.3E-15 82.4 10.6 134 14-153 5-175 (431)
297 KOG2655 Septin family protein 99.2 4.1E-10 8.9E-15 83.4 10.4 136 14-154 20-193 (366)
298 KOG1954 Endocytosis/signaling 99.2 2.4E-10 5.2E-15 84.3 9.1 125 5-134 48-225 (532)
299 smart00053 DYNc Dynamin, GTPas 99.2 5.2E-10 1.1E-14 79.4 10.4 68 64-134 125-206 (240)
300 PRK14845 translation initiatio 99.1 4.5E-10 9.8E-15 93.4 9.7 102 26-134 472-592 (1049)
301 KOG0458 Elongation factor 1 al 99.1 1E-09 2.2E-14 84.9 9.9 131 10-145 172-339 (603)
302 cd01900 YchF YchF subfamily. 99.1 2.1E-10 4.6E-15 82.9 5.9 81 18-98 1-103 (274)
303 TIGR02836 spore_IV_A stage IV 99.1 5.3E-09 1.1E-13 78.8 13.3 137 13-155 15-212 (492)
304 COG0012 Predicted GTPase, prob 99.1 1.2E-09 2.6E-14 80.9 9.3 84 15-98 2-108 (372)
305 KOG0082 G-protein alpha subuni 99.0 1.7E-09 3.7E-14 80.0 9.3 79 53-133 186-275 (354)
306 COG4108 PrfC Peptide chain rel 99.0 2E-09 4.4E-14 80.9 8.6 127 12-144 9-157 (528)
307 KOG1547 Septin CDC10 and relat 99.0 1.3E-09 2.8E-14 76.2 6.9 60 14-73 45-113 (336)
308 KOG0461 Selenocysteine-specifi 99.0 4.2E-09 9.1E-14 77.3 9.7 125 15-143 7-146 (522)
309 COG4917 EutP Ethanolamine util 99.0 8.4E-10 1.8E-14 69.5 4.4 118 16-156 2-123 (148)
310 PF03029 ATP_bind_1: Conserved 98.9 1.1E-09 2.4E-14 77.9 4.5 70 65-134 92-170 (238)
311 COG0050 TufB GTPases - transla 98.9 5.3E-09 1.1E-13 75.2 7.6 135 10-153 7-163 (394)
312 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 4.6E-09 1E-13 69.0 5.9 54 17-74 85-138 (141)
313 KOG3887 Predicted small GTPase 98.9 6.6E-09 1.4E-13 72.8 6.5 113 16-132 28-147 (347)
314 PRK13768 GTPase; Provisional 98.9 5.1E-09 1.1E-13 75.3 6.1 69 65-134 98-176 (253)
315 PF00503 G-alpha: G-protein al 98.9 2.1E-08 4.6E-13 76.4 9.7 69 64-132 236-315 (389)
316 KOG1486 GTP-binding protein DR 98.8 8E-08 1.7E-12 67.9 10.7 98 14-113 61-166 (364)
317 KOG1532 GTPase XAB1, interacts 98.8 3.3E-09 7.2E-14 75.5 3.5 27 11-37 15-41 (366)
318 TIGR00157 ribosome small subun 98.8 2.1E-08 4.6E-13 71.7 7.7 80 75-159 24-106 (245)
319 cd04178 Nucleostemin_like Nucl 98.8 1.8E-08 3.9E-13 68.4 6.6 56 13-73 115-171 (172)
320 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.4E-08 5.3E-13 66.7 6.7 55 14-73 101-156 (157)
321 KOG1144 Translation initiation 98.8 4.3E-08 9.4E-13 78.1 8.4 116 10-132 470-604 (1064)
322 TIGR00092 GTP-binding protein 98.7 3.6E-08 7.8E-13 73.9 7.2 84 16-99 3-109 (368)
323 TIGR03348 VI_IcmF type VI secr 98.7 9.8E-08 2.1E-12 81.5 9.5 112 17-133 113-256 (1169)
324 cd01856 YlqF YlqF. Proteins o 98.7 5.9E-08 1.3E-12 65.8 6.7 57 13-74 113-170 (171)
325 KOG1491 Predicted GTP-binding 98.7 3.9E-08 8.4E-13 72.0 5.7 87 13-99 18-126 (391)
326 cd01859 MJ1464 MJ1464. This f 98.7 7.4E-08 1.6E-12 64.2 6.6 56 14-73 100-155 (156)
327 KOG0410 Predicted GTP binding 98.7 1E-07 2.2E-12 69.6 7.1 121 13-134 176-308 (410)
328 TIGR03596 GTPase_YlqF ribosome 98.7 8.8E-08 1.9E-12 69.8 6.9 57 13-74 116-173 (276)
329 COG5257 GCD11 Translation init 98.7 2.7E-08 5.9E-13 72.4 4.1 134 14-149 9-170 (415)
330 PRK09563 rbgA GTPase YlqF; Rev 98.7 1.2E-07 2.6E-12 69.4 7.5 57 13-74 119-176 (287)
331 cd01855 YqeH YqeH. YqeH is an 98.6 7.4E-08 1.6E-12 66.3 5.5 53 16-73 128-189 (190)
332 KOG0448 Mitofusin 1 GTPase, in 98.6 8E-07 1.7E-11 70.4 11.6 117 13-133 107-274 (749)
333 COG1161 Predicted GTPases [Gen 98.6 1.2E-07 2.5E-12 70.5 6.4 58 13-74 130-187 (322)
334 KOG0467 Translation elongation 98.6 3E-07 6.5E-12 73.5 8.2 118 11-132 5-136 (887)
335 TIGR00101 ureG urease accessor 98.6 4.2E-07 9.1E-12 63.1 8.0 23 16-38 2-24 (199)
336 PRK09435 membrane ATPase/prote 98.5 4.9E-07 1.1E-11 67.3 8.0 60 64-134 149-208 (332)
337 COG1618 Predicted nucleotide k 98.5 2.5E-06 5.4E-11 56.5 10.2 112 14-131 4-141 (179)
338 cd01849 YlqF_related_GTPase Yl 98.5 3.2E-07 6.9E-12 61.2 6.2 56 13-73 98-154 (155)
339 KOG0705 GTPase-activating prot 98.5 1.8E-07 3.9E-12 72.4 5.0 135 15-156 30-167 (749)
340 COG3276 SelB Selenocysteine-sp 98.5 1.1E-06 2.4E-11 66.5 9.1 111 17-135 2-118 (447)
341 KOG0460 Mitochondrial translat 98.5 6.4E-07 1.4E-11 65.9 7.4 135 10-152 49-204 (449)
342 KOG0464 Elongation factor G [T 98.5 6.3E-08 1.4E-12 72.9 1.6 126 15-144 37-178 (753)
343 COG5258 GTPBP1 GTPase [General 98.5 9.7E-07 2.1E-11 65.9 7.6 140 9-152 111-288 (527)
344 KOG2486 Predicted GTPase [Gene 98.4 8.2E-07 1.8E-11 63.6 6.8 115 10-133 131-261 (320)
345 KOG3859 Septins (P-loop GTPase 98.4 6.6E-07 1.4E-11 64.2 6.1 62 12-73 39-104 (406)
346 cd01851 GBP Guanylate-binding 98.4 1E-05 2.2E-10 57.3 12.2 86 13-100 5-104 (224)
347 TIGR00073 hypB hydrogenase acc 98.4 2.1E-06 4.6E-11 59.9 8.5 24 14-37 21-44 (207)
348 KOG1143 Predicted translation 98.4 8.7E-07 1.9E-11 66.0 6.6 141 10-154 162-338 (591)
349 KOG0099 G protein subunit Galp 98.4 6.5E-07 1.4E-11 63.7 5.0 72 62-133 200-282 (379)
350 PF03193 DUF258: Protein of un 98.4 4.9E-07 1.1E-11 60.4 4.0 23 16-38 36-58 (161)
351 KOG0085 G protein subunit Galp 98.4 1E-07 2.2E-12 66.6 0.5 74 60-133 195-279 (359)
352 COG5192 BMS1 GTP-binding prote 98.3 3.1E-06 6.8E-11 66.2 8.4 113 9-133 63-176 (1077)
353 cd03112 CobW_like The function 98.3 3.7E-06 8E-11 56.3 7.7 21 18-38 3-23 (158)
354 KOG0447 Dynamin-like GTP bindi 98.3 1.1E-05 2.5E-10 63.0 11.1 81 64-148 412-506 (980)
355 TIGR03597 GTPase_YqeH ribosome 98.3 1.7E-06 3.6E-11 65.4 6.1 55 16-75 155-215 (360)
356 TIGR00750 lao LAO/AO transport 98.3 6.5E-06 1.4E-10 60.7 9.0 61 64-135 127-187 (300)
357 PRK12288 GTPase RsgA; Reviewed 98.3 2.1E-06 4.6E-11 64.4 6.0 23 17-39 207-229 (347)
358 PRK13796 GTPase YqeH; Provisio 98.3 1.8E-06 3.8E-11 65.4 5.3 54 16-74 161-220 (365)
359 COG3523 IcmF Type VI protein s 98.2 2.9E-06 6.3E-11 71.7 6.4 111 18-133 128-269 (1188)
360 TIGR00157 ribosome small subun 98.2 3.6E-06 7.7E-11 60.3 5.5 23 17-39 122-144 (245)
361 PRK12289 GTPase RsgA; Reviewed 98.2 3.2E-06 7E-11 63.5 5.4 23 17-39 174-196 (352)
362 PF03266 NTPase_1: NTPase; In 98.2 1.3E-05 2.7E-10 54.3 7.5 108 17-130 1-135 (168)
363 KOG1487 GTP-binding protein DR 98.1 1.5E-05 3.3E-10 56.8 7.4 92 15-108 59-157 (358)
364 KOG0465 Mitochondrial elongati 98.1 8.1E-06 1.8E-10 64.2 5.3 115 13-133 37-169 (721)
365 PRK00098 GTPase RsgA; Reviewed 98.1 1.1E-05 2.3E-10 59.5 5.7 24 16-39 165-188 (298)
366 KOG1424 Predicted GTP-binding 98.1 1.1E-05 2.4E-10 62.3 5.9 60 10-74 309-369 (562)
367 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.3E-05 2.7E-10 58.9 5.7 60 16-78 162-227 (287)
368 COG1162 Predicted GTPases [Gen 98.0 1E-05 2.3E-10 58.9 5.1 59 17-78 166-230 (301)
369 cd01854 YjeQ_engC YjeQ/EngC. 98.0 2E-05 4.2E-10 57.9 5.9 48 84-134 75-123 (287)
370 KOG4273 Uncharacterized conser 98.0 9.4E-05 2E-09 52.6 8.9 114 15-134 4-123 (418)
371 TIGR01425 SRP54_euk signal rec 97.9 0.00011 2.3E-09 56.7 9.2 22 15-36 100-121 (429)
372 PRK13695 putative NTPase; Prov 97.9 0.00015 3.3E-09 49.1 9.0 22 16-37 1-22 (174)
373 cd01855 YqeH YqeH. YqeH is an 97.9 3.5E-05 7.5E-10 53.0 5.8 52 77-134 24-75 (190)
374 PRK11537 putative GTP-binding 97.9 0.00013 2.9E-09 54.2 9.0 22 17-38 6-27 (318)
375 PF06858 NOG1: Nucleolar GTP-b 97.9 8.6E-05 1.9E-09 40.6 5.8 43 88-131 14-58 (58)
376 PF09547 Spore_IV_A: Stage IV 97.9 0.00045 9.8E-09 52.8 11.5 138 14-157 16-214 (492)
377 cd01859 MJ1464 MJ1464. This f 97.8 1.7E-05 3.7E-10 52.8 3.4 53 77-133 2-54 (156)
378 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 6.7E-05 1.5E-09 49.1 6.0 71 82-159 6-80 (141)
379 PRK00098 GTPase RsgA; Reviewed 97.8 4.3E-05 9.4E-10 56.4 5.4 46 85-133 78-124 (298)
380 TIGR03597 GTPase_YqeH ribosome 97.8 3.8E-05 8.3E-10 58.1 5.2 78 74-159 50-136 (360)
381 cd02038 FleN-like FleN is a me 97.8 8.7E-05 1.9E-09 48.5 6.2 107 19-133 4-110 (139)
382 PRK10416 signal recognition pa 97.8 0.00016 3.4E-09 53.9 8.2 23 15-37 114-136 (318)
383 PRK14722 flhF flagellar biosyn 97.8 0.00018 3.9E-09 54.5 8.5 22 16-37 138-159 (374)
384 PRK12289 GTPase RsgA; Reviewed 97.8 0.00019 4.2E-09 54.1 8.0 53 78-133 80-133 (352)
385 cd00009 AAA The AAA+ (ATPases 97.7 0.00026 5.7E-09 45.7 7.7 24 16-39 20-43 (151)
386 cd03115 SRP The signal recogni 97.7 0.00019 4.1E-09 48.6 7.1 64 64-133 83-152 (173)
387 PRK12288 GTPase RsgA; Reviewed 97.7 0.00016 3.5E-09 54.4 7.2 47 85-134 118-164 (347)
388 KOG2484 GTPase [General functi 97.7 3.4E-05 7.3E-10 58.0 3.4 59 11-73 248-306 (435)
389 KOG0469 Elongation factor 2 [T 97.7 0.0002 4.4E-09 55.7 7.5 129 12-144 16-174 (842)
390 PRK08118 topology modulation p 97.7 4.2E-05 9.2E-10 51.7 3.1 23 16-38 2-24 (167)
391 PF13207 AAA_17: AAA domain; P 97.7 4.4E-05 9.5E-10 48.5 3.1 22 17-38 1-22 (121)
392 COG1419 FlhF Flagellar GTP-bin 97.6 0.00035 7.6E-09 53.0 7.9 23 15-37 203-225 (407)
393 COG0563 Adk Adenylate kinase a 97.6 4.4E-05 9.6E-10 52.1 2.9 23 16-38 1-23 (178)
394 cd02042 ParA ParA and ParB of 97.6 0.00036 7.9E-09 43.0 6.8 82 18-111 2-84 (104)
395 PF13671 AAA_33: AAA domain; P 97.6 5.1E-05 1.1E-09 49.5 2.9 20 18-37 2-21 (143)
396 KOG0463 GTP-binding protein GP 97.6 7.6E-05 1.6E-09 56.1 4.0 27 14-40 132-158 (641)
397 PRK07261 topology modulation p 97.6 5.9E-05 1.3E-09 51.1 3.1 22 17-38 2-23 (171)
398 TIGR00064 ftsY signal recognit 97.6 0.00037 8E-09 50.8 7.4 64 64-133 155-230 (272)
399 PRK12727 flagellar biosynthesi 97.6 0.00061 1.3E-08 53.8 8.8 23 15-37 350-372 (559)
400 PF11111 CENP-M: Centromere pr 97.5 0.0069 1.5E-07 40.8 12.1 123 11-158 11-133 (176)
401 PF13555 AAA_29: P-loop contai 97.5 0.00011 2.3E-09 41.1 3.0 23 17-39 25-47 (62)
402 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.0012 2.6E-08 39.6 8.0 76 18-108 2-78 (99)
403 KOG2485 Conserved ATP/GTP bind 97.5 0.00021 4.5E-09 52.3 5.1 64 9-74 137-206 (335)
404 cd01858 NGP_1 NGP-1. Autoanti 97.5 0.00021 4.5E-09 47.6 4.7 46 84-133 5-52 (157)
405 COG1703 ArgK Putative periplas 97.5 0.00068 1.5E-08 49.5 7.5 59 64-133 144-202 (323)
406 TIGR00150 HI0065_YjeE ATPase, 97.5 0.00053 1.1E-08 44.5 6.0 23 17-39 24-46 (133)
407 COG1116 TauB ABC-type nitrate/ 97.5 0.00045 9.8E-09 49.1 6.0 23 17-39 31-53 (248)
408 COG0523 Putative GTPases (G3E 97.4 0.0035 7.5E-08 46.8 10.9 22 18-39 4-25 (323)
409 cd02019 NK Nucleoside/nucleoti 97.4 0.00015 3.2E-09 41.5 2.9 21 18-38 2-22 (69)
410 PF13521 AAA_28: AAA domain; P 97.4 9.5E-05 2.1E-09 49.6 2.3 22 17-38 1-22 (163)
411 COG1126 GlnQ ABC-type polar am 97.4 0.00018 3.9E-09 50.2 3.6 23 17-39 30-52 (240)
412 PF00005 ABC_tran: ABC transpo 97.4 0.00016 3.5E-09 46.8 3.0 23 17-39 13-35 (137)
413 cd03111 CpaE_like This protein 97.4 0.0013 2.7E-08 41.0 6.9 100 21-129 6-106 (106)
414 KOG0466 Translation initiation 97.4 2.3E-05 5E-10 57.2 -1.1 133 12-150 35-210 (466)
415 cd01849 YlqF_related_GTPase Yl 97.4 0.00032 7E-09 46.6 4.3 42 89-133 1-42 (155)
416 PF05621 TniB: Bacterial TniB 97.4 0.00093 2E-08 49.0 6.8 102 14-129 60-189 (302)
417 PRK06217 hypothetical protein; 97.3 0.00022 4.7E-09 48.8 3.2 23 16-38 2-24 (183)
418 COG1136 SalX ABC-type antimicr 97.3 0.00027 5.9E-09 49.8 3.6 24 17-40 33-56 (226)
419 TIGR02475 CobW cobalamin biosy 97.3 0.0036 7.8E-08 47.2 9.8 22 17-38 6-27 (341)
420 PF05729 NACHT: NACHT domain 97.3 0.00065 1.4E-08 45.1 5.3 21 18-38 3-23 (166)
421 COG1120 FepC ABC-type cobalami 97.3 0.00021 4.6E-09 51.3 3.0 22 17-38 30-51 (258)
422 smart00382 AAA ATPases associa 97.3 0.00027 5.9E-09 45.2 3.3 26 16-41 3-28 (148)
423 PF00004 AAA: ATPase family as 97.3 0.00024 5.1E-09 45.5 2.9 22 18-39 1-22 (132)
424 KOG0459 Polypeptide release fa 97.3 0.00044 9.6E-09 52.4 4.6 127 10-138 74-235 (501)
425 cd01856 YlqF YlqF. Proteins o 97.3 0.00019 4E-09 48.6 2.5 57 71-133 2-59 (171)
426 cd00071 GMPK Guanosine monopho 97.3 0.00026 5.6E-09 46.2 3.0 21 18-38 2-22 (137)
427 TIGR03596 GTPase_YlqF ribosome 97.3 0.00021 4.6E-09 52.1 2.8 57 71-133 4-61 (276)
428 PRK10078 ribose 1,5-bisphospho 97.3 0.00028 6.1E-09 48.4 3.3 22 17-38 4-25 (186)
429 PF02367 UPF0079: Uncharacteri 97.3 0.00071 1.5E-08 43.3 4.8 59 16-77 16-77 (123)
430 PF03205 MobB: Molybdopterin g 97.3 0.00029 6.2E-09 46.2 3.1 23 17-39 2-24 (140)
431 TIGR02322 phosphon_PhnN phosph 97.3 0.00026 5.7E-09 48.1 2.9 22 17-38 3-24 (179)
432 PF13238 AAA_18: AAA domain; P 97.2 0.00029 6.2E-09 44.9 2.9 21 18-38 1-21 (129)
433 TIGR03263 guanyl_kin guanylate 97.2 0.00031 6.7E-09 47.7 3.0 22 17-38 3-24 (180)
434 COG3845 ABC-type uncharacteriz 97.2 0.0025 5.3E-08 49.5 8.1 50 78-131 149-201 (501)
435 PRK14530 adenylate kinase; Pro 97.2 0.00032 6.9E-09 49.3 3.1 21 17-37 5-25 (215)
436 cd03110 Fer4_NifH_child This p 97.2 0.0033 7.1E-08 42.7 8.0 85 62-156 91-175 (179)
437 PRK03839 putative kinase; Prov 97.2 0.00031 6.8E-09 47.8 3.0 22 17-38 2-23 (180)
438 cd02023 UMPK Uridine monophosp 97.2 0.00031 6.8E-09 48.6 2.9 21 18-38 2-22 (198)
439 cd03238 ABC_UvrA The excision 97.2 0.0004 8.6E-09 47.4 3.2 20 17-36 23-42 (176)
440 TIGR00235 udk uridine kinase. 97.2 0.00053 1.2E-08 47.9 3.9 24 14-37 5-28 (207)
441 cd03222 ABC_RNaseL_inhibitor T 97.2 0.0005 1.1E-08 46.9 3.7 23 17-39 27-49 (177)
442 TIGR00959 ffh signal recogniti 97.2 0.0051 1.1E-07 47.7 9.5 64 64-133 183-252 (428)
443 COG3839 MalK ABC-type sugar tr 97.2 0.00034 7.4E-09 52.2 3.0 22 18-39 32-53 (338)
444 PRK14738 gmk guanylate kinase; 97.2 0.00063 1.4E-08 47.5 4.2 28 11-38 9-36 (206)
445 PRK14532 adenylate kinase; Pro 97.2 0.0004 8.6E-09 47.6 3.1 21 17-37 2-22 (188)
446 cd01130 VirB11-like_ATPase Typ 97.2 0.00043 9.3E-09 47.5 3.2 24 16-39 26-49 (186)
447 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.00042 9.2E-09 48.6 3.3 23 17-39 32-54 (218)
448 PF07728 AAA_5: AAA domain (dy 97.2 0.00042 9E-09 45.1 3.0 22 17-38 1-22 (139)
449 PRK10646 ADP-binding protein; 97.2 0.0029 6.2E-08 42.1 6.9 23 17-39 30-52 (153)
450 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00039 8.6E-09 47.4 3.0 22 16-37 4-25 (188)
451 COG0378 HypB Ni2+-binding GTPa 97.1 0.00042 9E-09 47.5 3.0 23 15-37 13-35 (202)
452 PRK14531 adenylate kinase; Pro 97.1 0.00046 9.9E-09 47.2 3.2 22 16-37 3-24 (183)
453 PRK13949 shikimate kinase; Pro 97.1 0.00049 1.1E-08 46.6 3.1 21 17-37 3-23 (169)
454 cd03225 ABC_cobalt_CbiO_domain 97.1 0.0005 1.1E-08 48.0 3.3 23 17-39 29-51 (211)
455 PF04665 Pox_A32: Poxvirus A32 97.1 0.0005 1.1E-08 49.0 3.1 26 13-38 11-36 (241)
456 TIGR00960 3a0501s02 Type II (G 97.1 0.00051 1.1E-08 48.2 3.2 23 17-39 31-53 (216)
457 TIGR01166 cbiO cobalt transpor 97.1 0.00053 1.1E-08 47.1 3.2 23 17-39 20-42 (190)
458 cd02025 PanK Pantothenate kina 97.1 0.00042 9.1E-09 48.9 2.8 20 18-37 2-21 (220)
459 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00052 1.1E-08 42.8 2.8 21 16-36 16-36 (107)
460 cd03226 ABC_cobalt_CbiO_domain 97.1 0.0007 1.5E-08 47.1 3.8 23 17-39 28-50 (205)
461 COG1117 PstB ABC-type phosphat 97.1 0.0012 2.5E-08 46.3 4.7 22 17-38 35-56 (253)
462 PRK02496 adk adenylate kinase; 97.1 0.0006 1.3E-08 46.6 3.4 22 16-37 2-23 (184)
463 TIGR02673 FtsE cell division A 97.1 0.00055 1.2E-08 47.9 3.3 23 17-39 30-52 (214)
464 KOG3347 Predicted nucleotide k 97.1 0.00043 9.3E-09 45.5 2.4 25 13-37 5-29 (176)
465 cd03292 ABC_FtsE_transporter F 97.1 0.00056 1.2E-08 47.8 3.3 23 17-39 29-51 (214)
466 PRK08233 hypothetical protein; 97.1 0.00051 1.1E-08 46.7 3.0 23 16-38 4-26 (182)
467 cd01131 PilT Pilus retraction 97.1 0.0025 5.5E-08 44.2 6.5 22 18-39 4-25 (198)
468 PRK01889 GTPase RsgA; Reviewed 97.1 0.00065 1.4E-08 51.4 3.7 54 17-73 197-256 (356)
469 TIGR03608 L_ocin_972_ABC putat 97.1 0.00077 1.7E-08 46.8 3.9 23 17-39 26-48 (206)
470 PRK05480 uridine/cytidine kina 97.1 0.00064 1.4E-08 47.5 3.4 24 14-37 5-28 (209)
471 PRK13851 type IV secretion sys 97.1 0.00046 9.9E-09 51.9 2.8 26 14-39 161-186 (344)
472 cd03261 ABC_Org_Solvent_Resist 97.1 0.00076 1.6E-08 47.9 3.9 23 17-39 28-50 (235)
473 cd03264 ABC_drug_resistance_li 97.1 0.00051 1.1E-08 48.0 2.9 23 17-39 27-49 (211)
474 cd03269 ABC_putative_ATPase Th 97.1 0.00061 1.3E-08 47.6 3.3 23 17-39 28-50 (210)
475 COG1121 ZnuC ABC-type Mn/Zn tr 97.1 0.00054 1.2E-08 49.1 3.0 21 17-37 32-52 (254)
476 PRK15177 Vi polysaccharide exp 97.1 0.00077 1.7E-08 47.3 3.8 23 17-39 15-37 (213)
477 cd03293 ABC_NrtD_SsuB_transpor 97.1 0.00061 1.3E-08 47.9 3.3 23 17-39 32-54 (220)
478 cd01428 ADK Adenylate kinase ( 97.1 0.00049 1.1E-08 47.3 2.7 22 17-38 1-22 (194)
479 cd03262 ABC_HisP_GlnQ_permease 97.1 0.00062 1.3E-08 47.6 3.3 23 17-39 28-50 (213)
480 cd03259 ABC_Carb_Solutes_like 97.1 0.00062 1.3E-08 47.6 3.3 23 17-39 28-50 (213)
481 cd03265 ABC_DrrA DrrA is the A 97.0 0.00063 1.4E-08 47.9 3.3 23 17-39 28-50 (220)
482 TIGR02315 ABC_phnC phosphonate 97.0 0.00063 1.4E-08 48.5 3.3 23 17-39 30-52 (243)
483 COG0194 Gmk Guanylate kinase [ 97.0 0.00049 1.1E-08 46.9 2.5 24 16-39 5-28 (191)
484 cd03224 ABC_TM1139_LivF_branch 97.0 0.00062 1.4E-08 47.9 3.2 23 17-39 28-50 (222)
485 cd03216 ABC_Carb_Monos_I This 97.0 0.00095 2.1E-08 44.8 3.9 23 17-39 28-50 (163)
486 PRK00300 gmk guanylate kinase; 97.0 0.00058 1.3E-08 47.4 3.0 22 17-38 7-28 (205)
487 cd03229 ABC_Class3 This class 97.0 0.0007 1.5E-08 46.1 3.3 23 17-39 28-50 (178)
488 PRK13541 cytochrome c biogenes 97.0 0.00089 1.9E-08 46.2 3.9 23 17-39 28-50 (195)
489 cd03258 ABC_MetN_methionine_tr 97.0 0.00066 1.4E-08 48.2 3.3 23 17-39 33-55 (233)
490 PRK10751 molybdopterin-guanine 97.0 0.00059 1.3E-08 46.3 2.8 23 16-38 7-29 (173)
491 cd03218 ABC_YhbG The ABC trans 97.0 0.00086 1.9E-08 47.5 3.9 23 17-39 28-50 (232)
492 TIGR02211 LolD_lipo_ex lipopro 97.0 0.00089 1.9E-08 47.1 3.9 23 17-39 33-55 (221)
493 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.00083 1.8E-08 44.2 3.5 23 17-39 28-50 (144)
494 cd03257 ABC_NikE_OppD_transpor 97.0 0.00066 1.4E-08 47.9 3.2 23 17-39 33-55 (228)
495 PRK14737 gmk guanylate kinase; 97.0 0.00064 1.4E-08 46.8 3.0 22 17-38 6-27 (186)
496 TIGR01189 ccmA heme ABC export 97.0 0.00096 2.1E-08 46.2 3.9 23 17-39 28-50 (198)
497 TIGR01313 therm_gnt_kin carboh 97.0 0.0005 1.1E-08 46.0 2.4 21 18-38 1-21 (163)
498 cd03263 ABC_subfamily_A The AB 97.0 0.0007 1.5E-08 47.6 3.3 23 17-39 30-52 (220)
499 cd03301 ABC_MalK_N The N-termi 97.0 0.00095 2.1E-08 46.7 3.9 23 17-39 28-50 (213)
500 cd03260 ABC_PstB_phosphate_tra 97.0 0.0007 1.5E-08 47.8 3.2 23 17-39 28-50 (227)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-38 Score=208.24 Aligned_cols=145 Identities=61% Similarity=1.050 Sum_probs=140.3
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
...+++.+||+++|+.|+|||+|+.|+..+.|.+.+..|.++++..+.+..+++.+.+++|||.||+++..+..++++++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceE
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVH 154 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~ 154 (160)
|++|+|||+++.+||+.+..|+.++.++...++|.++||||+|+. ..+.++.+++++|+.++++.
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~-~~~~v~~~~a~~fa~~~~~~ 147 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT-EKRVVSTEEAQEFADELGIP 147 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH-hheecCHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999899999999999998 78899999999999999887
No 2
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-34 Score=195.08 Aligned_cols=148 Identities=72% Similarity=1.143 Sum_probs=142.6
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCc
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (160)
..+++.+||+++|+++||||+++.++..+.|...+..+.++++..+.+..++..+.+++|||.||+++..+..+++++++
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEEe
Q 031411 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVIL 158 (160)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (160)
++++|||+++..+|+++..|+..+..+.+.++|+++||||+|+. ..+++..++++++|.++|+.|+..
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~-~~R~V~~e~ge~lA~e~G~~F~Et 154 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE-EKRQVSKERGEALAREYGIKFFET 154 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc-ccccccHHHHHHHHHHhCCeEEEc
Confidence 99999999999999999999999999999999999999999998 689999999999999999887754
No 3
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-34 Score=190.01 Aligned_cols=144 Identities=49% Similarity=0.895 Sum_probs=138.3
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
+.+.+|++++|+.|+|||+|+.++....|...+..|.++++....++++++.+++++|||.|++.+.....++++++-++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
++|||++++++|..+..|+..+.++..++.-|++++||+||. ..+++..||.+.||+++++.+.
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~-~rR~Vs~EEGeaFA~ehgLifm 146 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE-ARREVSKEEGEAFAREHGLIFM 146 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh-ccccccHHHHHHHHHHcCceee
Confidence 999999999999999999999999988899999999999998 7779999999999999998765
No 4
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-33 Score=187.90 Aligned_cols=145 Identities=41% Similarity=0.725 Sum_probs=136.8
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...+|++++|+.++|||||+.|+..+.|.+...+|.+-.+....+..++..++|.+|||.|+++|..+.+.++++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 45699999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEEe
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVIL 158 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (160)
+|||+++.+||..++.|+.++.+..+.++-+.++|||+||. +.+++..++++.++.+.++.++..
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~-~~R~V~~~ea~~yAe~~gll~~ET 147 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLL-ERREVEFEEAQAYAESQGLLFFET 147 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhh-hcccccHHHHHHHHHhcCCEEEEE
Confidence 99999999999999999999999888888999999999998 678999999999999999877643
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-33 Score=187.55 Aligned_cols=145 Identities=37% Similarity=0.658 Sum_probs=136.0
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
.-..+|++++|+.++||||||+|+..+.|...|..|.++++....+.+.++.+++++|||.||++++.+.+++++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 33459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
|+|||+++..+|+...+|+..+.+.... ++-|++||||.||. ..+++..+|....++++++.|+.
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~-dkrqvs~eEg~~kAkel~a~f~e 164 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLS-DKRQVSIEEGERKAKELNAEFIE 164 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEccccccc-chhhhhHHHHHHHHHHhCcEEEE
Confidence 9999999999999999999999887664 58899999999998 56899999999999999997765
No 6
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=2e-32 Score=188.26 Aligned_cols=144 Identities=47% Similarity=0.785 Sum_probs=129.2
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
.+..+||+++|+.++|||||+.++..+.+...+.++.+.++....+..++..+.+.+||++|++++..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999988877777888777777788899899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
++|||++++.+|+.+..|+.++..+.+ +.|++|||||+|+. ..+.+..++++++++.+++.++.
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~DL~-~~~~v~~~~~~~~a~~~~~~~~e 146 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHLA-FKRQVATEQAQAYAERNGMTFFE 146 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccch-hccCCCHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999987765 79999999999997 45678899999999988765543
No 7
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-33 Score=186.39 Aligned_cols=151 Identities=46% Similarity=0.820 Sum_probs=143.4
Q ss_pred CCCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhcc
Q 031411 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (160)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 86 (160)
..+.++++.+||+++|++++|||-|+.|+..+.|..+..+|.++++....+.++++.+..++|||.||++|+.+..++++
T Consensus 6 ~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYr 85 (222)
T KOG0087|consen 6 DKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYR 85 (222)
T ss_pred CCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEEe
Q 031411 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVIL 158 (160)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (160)
++.++++|||++...+|+.+.+|+.++..|...+++|+++|||+||. +.+.+..++++.++...+..++..
T Consensus 86 gAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~-~lraV~te~~k~~Ae~~~l~f~Et 156 (222)
T KOG0087|consen 86 GAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN-HLRAVPTEDGKAFAEKEGLFFLET 156 (222)
T ss_pred ccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh-hccccchhhhHhHHHhcCceEEEe
Confidence 99999999999999999999999999999998899999999999998 689999999999999988877653
No 8
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=7.8e-33 Score=178.98 Aligned_cols=148 Identities=47% Similarity=0.797 Sum_probs=138.8
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCc
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (160)
..+...+||+++|+.|+|||||+-++..+.|.+....+.+.++..+.+.+++.++++.+|||.|+++|..+..++++++.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 56778899999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEEe
Q 031411 90 GILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVIL 158 (160)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (160)
++|+|||.+.+++|..+..|++++..++. .++-.++|+||.|.. .++.+..+|..+|+++|+|.|+.+
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke-s~R~V~reEG~kfAr~h~~LFiE~ 154 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE-SERVVDREEGLKFARKHRCLFIEC 154 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch-hcccccHHHHHHHHHhhCcEEEEc
Confidence 99999999999999999999999988875 577889999999986 688999999999999999988754
No 9
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=6.2e-32 Score=187.44 Aligned_cols=143 Identities=44% Similarity=0.822 Sum_probs=127.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+.|+++|+.|+|||||++++..+.|...+.++.+.++....+..++..+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999998888888888888888899998899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhc-ce--EEEEee
Q 031411 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTV-QV--HLVILK 159 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~-~~--~~~~~k 159 (160)
|++++++|+.+..|+..+.+....+.|+++++||+|+. ..+++..+++++++.++ ++ ..+|||
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~-~~~~v~~~~~~~~a~~~~~~~~~etSAk 146 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE-TDREISRQQGEKFAQQITGMRFCEASAK 146 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-cccccCHHHHHHHHHhcCCCEEEEecCC
Confidence 99999999999999998877766689999999999997 46778888899998775 54 345554
No 10
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-32 Score=174.75 Aligned_cols=152 Identities=51% Similarity=0.882 Sum_probs=141.9
Q ss_pred CCCCCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhh
Q 031411 5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84 (160)
Q Consensus 5 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 84 (160)
.....+..++.+|++++|+..+|||||+.++.+..|.....++.++++..+.+.-..+++.+++|||.|+++|..+...+
T Consensus 11 ~~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTay 90 (193)
T KOG0093|consen 11 KDSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAY 90 (193)
T ss_pred cccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHH
Confidence 33446778899999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+++++++|++||+++.++|..+..|...+..++..+.|+++++||||+. .++.++.|..+.++.++|..|+.
T Consensus 91 yRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd-~eRvis~e~g~~l~~~LGfefFE 162 (193)
T KOG0093|consen 91 YRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMD-SERVISHERGRQLADQLGFEFFE 162 (193)
T ss_pred hhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCc-cceeeeHHHHHHHHHHhChHHhh
Confidence 9999999999999999999999999999999998999999999999997 88899999999999999987654
No 11
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.7e-31 Score=182.19 Aligned_cols=140 Identities=21% Similarity=0.519 Sum_probs=123.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
++||+++|++++|||||++++..+.+...+.++.+..+ ...+..++..+.+.+|||+|++++..+...+++++|++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 47999999999999999999999999888888886554 45678888899999999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------ccCCChhHHHHHhhhcce-EEE
Q 031411 95 YDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDES-----------KREAPFCLHETILLTVQV-HLV 156 (160)
Q Consensus 95 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~ 156 (160)
||++++++|+.+ ..|+..+.++.+ +.|+++||||+||.++ .+.+..++++++++++++ .|+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~ 153 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYL 153 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEE
Confidence 999999999996 789999988765 7899999999999642 346888999999999996 443
No 12
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.9e-31 Score=182.43 Aligned_cols=143 Identities=22% Similarity=0.530 Sum_probs=126.0
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
+...+||+++|++++|||||++++..+.+...+.++.+..+ ...+..++..+.+.+|||+|++++..++..+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 34568999999999999999999999999888888887544 46678889899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------ccCCChhHHHHHhhhcce-EEE
Q 031411 92 LLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDES-----------KREAPFCLHETILLTVQV-HLV 156 (160)
Q Consensus 92 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~ 156 (160)
++|||++++.+|+.+ ..|+..+.++.+ +.|+++||||+||.+. .+.+..++++++++++++ .|+
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 157 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYI 157 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEE
Confidence 999999999999997 789999988765 7899999999999642 356889999999999985 554
No 13
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.9e-32 Score=179.28 Aligned_cols=141 Identities=37% Similarity=0.686 Sum_probs=131.0
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...+||+++|++|+|||||++++.+.+|.+.+..+.+.++..+.+.++++.+.+++|||.|++++..+...+++++|.++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCC-CccCCChhHHHHHhhhcce
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKILVGNKADMDE-SKREAPFCLHETILLTVQV 153 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~pi~vv~~K~Dl~~-~~~~~~~~~~~~~~~~~~~ 153 (160)
++||.+++.+|+.+..|-.++.... +...|++|+|||.|+.+ +.++++..++++||++.+-
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gn 152 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGN 152 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCC
Confidence 9999999999999999999996643 35679999999999976 4589999999999998764
No 14
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.8e-31 Score=186.52 Aligned_cols=147 Identities=18% Similarity=0.416 Sum_probs=128.1
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcE
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (160)
.....+||+++|+.+||||+|++++..+.|...+.++.+..+ ...+..++..+.+.+|||+|+++|..++..+++++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 445679999999999999999999999999988888887655 4467888999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------ccCCChhHHHHHhhhcce-EE--
Q 031411 91 ILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKILVGNKADMDES-----------KREAPFCLHETILLTVQV-HL-- 155 (160)
Q Consensus 91 ~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~-- 155 (160)
+++|||++++++|+. +..|+..+....+ +.|+++|+||+|+.+. .+.+..++++++|+++++ .|
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E 166 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence 999999999999998 4889999987765 7899999999999642 367889999999999997 34
Q ss_pred EEee
Q 031411 156 VILK 159 (160)
Q Consensus 156 ~~~k 159 (160)
+|||
T Consensus 167 tSAk 170 (232)
T cd04174 167 CSAF 170 (232)
T ss_pred ccCC
Confidence 4554
No 15
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=5.5e-31 Score=177.76 Aligned_cols=141 Identities=43% Similarity=0.824 Sum_probs=125.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.+||+++|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999998888778887777777778888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
||++++++|+.+..|+..+......+.|+++++||+|+. ....+..+++++++.+.++.++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE-AQRDVTYEEAKQFADENGLLFL 142 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-cccCcCHHHHHHHHHHcCCEEE
Confidence 999999999999999999877666678999999999997 4456778889999988876554
No 16
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=174.96 Aligned_cols=147 Identities=55% Similarity=0.952 Sum_probs=138.0
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
.++++.-++.+++|++|+|||+|+.++..+.|..+|..+.+.++..+.+.++|.++++++||+.|++++..+...++++.
T Consensus 2 ar~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgt 81 (198)
T KOG0079|consen 2 ARDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGT 81 (198)
T ss_pred cccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCC
Confidence 35666778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+++++|||.++.+||.+..+|+.++...++ .+|-+++|||.|.+ ..+.+..++++.|+...++..+.
T Consensus 82 hgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~-~RrvV~t~dAr~~A~~mgie~FE 148 (198)
T KOG0079|consen 82 HGVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDP-ERRVVDTEDARAFALQMGIELFE 148 (198)
T ss_pred ceEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCc-cceeeehHHHHHHHHhcCchhee
Confidence 999999999999999999999999999888 89999999999997 77788999999999999876654
No 17
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.98 E-value=1e-30 Score=177.88 Aligned_cols=136 Identities=31% Similarity=0.640 Sum_probs=121.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+|++++|++++|||||+.++..+.|..++.++.+..+ ...+..++..+.+.+|||+|++++..++..+++++|++++||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6999999999999999999999999888888887554 456777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCc---------cCCChhHHHHHhhhcce
Q 031411 96 DVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDESK---------REAPFCLHETILLTVQV 153 (160)
Q Consensus 96 d~~~~~~~~~~-~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~---------~~~~~~~~~~~~~~~~~ 153 (160)
|.+++++|+.+ ..|+..+.+..+ +.|++|||||+|+.++. +.+..+++++++.++++
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 147 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA 147 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC
Confidence 99999999998 689999987765 79999999999996432 35888999999999876
No 18
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.98 E-value=1.2e-30 Score=176.23 Aligned_cols=142 Identities=73% Similarity=1.154 Sum_probs=126.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
+.+||+++|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999999988888888887777788888888999999999999999989999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|||++++++|+.+.+|+..+.+....+.|+++++||+|+. ....+..+++.+++..+++.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME-EKRVVSKEEGEALADEYGIKFL 143 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999988766689999999999997 3456677888888888766443
No 19
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=1.6e-30 Score=174.68 Aligned_cols=141 Identities=38% Similarity=0.764 Sum_probs=131.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (160)
||+++|++++|||||++++.++.+...+.++.+.+.....+..++..+.+.+||++|++++..++...++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998888888999999999999999999999999989999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEEe
Q 031411 97 VTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVIL 158 (160)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (160)
.+++++|+.+..|+..+....+.+.|++|++||.|+. ..+++..+++++++.++++.|+..
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~-~~~~v~~~~~~~~~~~~~~~~~e~ 141 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS-DEREVSVEEAQEFAKELGVPYFEV 141 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG-GGSSSCHHHHHHHHHHTTSEEEEE
T ss_pred ccccccccccccccccccccccccccceeeecccccc-ccccchhhHHHHHHHHhCCEEEEE
Confidence 9999999999999999998888779999999999997 467888999999999998777654
No 20
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=3.4e-30 Score=173.23 Aligned_cols=140 Identities=50% Similarity=0.913 Sum_probs=125.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++++|||||++++..+.+.+.+.++.+.++....+..++..+.+.+||++|++++...+..++.++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888888887777778888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|++++++|+.+..|+..+......+.|+++++||.|+. ....+..+++..+++..++.|+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~-~~~~v~~~~~~~~~~~~~~~~~ 140 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE-QKRQVGDEQGNKLAKEYGMDFF 140 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEE
Confidence 99999999999999999987766689999999999996 4556677889999988777664
No 21
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=3.7e-30 Score=173.58 Aligned_cols=140 Identities=51% Similarity=0.886 Sum_probs=122.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988777888877776667777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|.+++++++.+.+|+..+.+....+.|+++++||+|+. ..+.+..+++++++...++.++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~ 141 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME-DERVVSSERGRQLADQLGFEFF 141 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC-cccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999987766688999999999996 3445567788888887665433
No 22
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.8e-31 Score=170.64 Aligned_cols=148 Identities=47% Similarity=0.838 Sum_probs=140.1
Q ss_pred CCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccC
Q 031411 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (160)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 87 (160)
++..+++.+|++++|+.|+|||+|++++..+++......+.++++..+.+.+.++.+++++|||.|++++....+.++++
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
+.+.++|||++++++|+.+..|+.......+.++-+++++||.||. ..+++...|+.+||.+..+.+.
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~-~~R~VtflEAs~FaqEnel~fl 149 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD-PEREVTFLEASRFAQENELMFL 149 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC-hhhhhhHHHHHhhhcccceeee
Confidence 9999999999999999999999999999888899999999999997 7889999999999999887554
No 23
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=5.1e-30 Score=172.92 Aligned_cols=142 Identities=63% Similarity=1.071 Sum_probs=125.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999988877788888777777888888888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
||++++++|+.+..|+..+......+.|+++++||+|+. ....+..+++.+++...++.++.
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 143 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-DKRVVDYSEAQEFADELGIPFLE 143 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc-cccCCCHHHHHHHHHHcCCeEEE
Confidence 999999999999999999988765678999999999996 44567778899999887765543
No 24
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=4.8e-30 Score=178.30 Aligned_cols=143 Identities=34% Similarity=0.662 Sum_probs=124.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEEC-CEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
+||+++|++|+|||||++++.++.+...+.++.+.++....+..+ +..+.+.+||++|++++..++..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999888888888888777777777 7788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcc---eEEEEee
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHA----SDNVNKILVGNKADMDESKREAPFCLHETILLTVQ---VHLVILK 159 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~----~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~k 159 (160)
||++++++|+.+..|+..+.... ..++|+++++||+|+. ..+.+..+++++++..++ ...+|+|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~e~Sak 151 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK-KRLAKDGEQMDQFCKENGFIGWFETSAK 151 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc-cccccCHHHHHHHHHHcCCceEEEEeCC
Confidence 99999999999999999886532 2578999999999996 356678888999999877 3344443
No 25
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.97 E-value=5.2e-30 Score=176.79 Aligned_cols=139 Identities=27% Similarity=0.573 Sum_probs=119.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.+||+++|+.++|||||+.++..+.+...+.++.+..+ ...+..++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999999888888887544 44567788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------cCCChhHHHHHhhhcce-EE
Q 031411 95 YDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------REAPFCLHETILLTVQV-HL 155 (160)
Q Consensus 95 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~ 155 (160)
||++++++|+.+. .|+..+.+..+ ++|+++++||.||.+.. ..+..+++++++.++++ .+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 154 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKY 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEE
Confidence 9999999999997 58888876654 79999999999996432 24677889999998773 44
No 26
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.4e-31 Score=168.76 Aligned_cols=145 Identities=49% Similarity=0.904 Sum_probs=134.7
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCc
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (160)
.+++..+||+++|+.|+|||+|++++..+.|++....+.+.++..+.+.++++++++++|||.|++++..+..++++.++
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 56888999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEE
Q 031411 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHL 155 (160)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (160)
+++++||++...+|+.+.+|+.++.++....+--++++||.|+. +.++++..-+++|+..+...|
T Consensus 82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~-drrevp~qigeefs~~qdmyf 146 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLA-DRREVPQQIGEEFSEAQDMYF 146 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchh-hhhhhhHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999988788889999999997 667788888888887765544
No 27
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=6.2e-30 Score=172.43 Aligned_cols=139 Identities=48% Similarity=0.887 Sum_probs=123.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
+.+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++++|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988887777887777777778888888899999999999999889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcce
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQV 153 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (160)
|||++++.+++.+..|+..+......++|+++++||+|+. ..++...+++.++++.+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~ 140 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE-EQREVLFEEACTLAEKNGM 140 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCC
Confidence 9999999999999999999987766689999999999997 4456677888888888764
No 28
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=1e-29 Score=171.28 Aligned_cols=142 Identities=49% Similarity=0.871 Sum_probs=125.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
..+||+++|+++||||||++++.++.+...+.++.+.++....+..++..+.+.+||+||+.++..++..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 45899999999999999999999998887778888888888888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|||++++.+++.+.+|+..+......+.|+++++||.|+. ..+.+..++.++++...++.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~ 143 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR-HLRAVPTEEAKAFAEKNGLSFI 143 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-ccccCCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999988777679999999999997 4456677788888887665444
No 29
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=1.3e-29 Score=171.37 Aligned_cols=144 Identities=49% Similarity=0.888 Sum_probs=126.4
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
.+.+||+++|.+++|||||++++.++.+...+.++.+.++....+..++....+.+||++|++++..+...+++++|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 46689999999999999999999999887777778777777777888888889999999999999988889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+|||++++++++.+..|+..+......+.|+++++||.|+. ....+..++++.++.+.++.++.
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e 145 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE-SRREVSYEEGEAFAKEHGLIFME 145 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999988765689999999999997 34566778888888887766553
No 30
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=1.9e-29 Score=175.06 Aligned_cols=144 Identities=56% Similarity=0.936 Sum_probs=125.3
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
++..+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++.+++++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 45679999999999999999999999988877888888777777777788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
++|||++++++|+.+..|+..+..... ..|++|++||+|+. ....+..+++.+++...++.++.
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e 146 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDP-ERKVVETEDAYKFAGQMGISLFE 146 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999877654 78999999999997 44556677888888887765443
No 31
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.97 E-value=1e-29 Score=173.13 Aligned_cols=142 Identities=26% Similarity=0.522 Sum_probs=120.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++++|||||++++..+.+...+.++.+..+. ..+..++..+.+.+||++|++++..++..+++++|++++||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 69999999999999999999999998888888875543 45677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------ccCCChhHHHHHhhhcc-e--EEEEee
Q 031411 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES-----------KREAPFCLHETILLTVQ-V--HLVILK 159 (160)
Q Consensus 96 d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~-~--~~~~~k 159 (160)
|.+++++|+.+. .|+..+....+ +.|+++++||+|+.+. .+.+..+++++++++.+ + ..+|||
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 999999999997 59988877654 7899999999998643 25677888999998876 3 445543
No 32
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=7.5e-30 Score=174.74 Aligned_cols=143 Identities=28% Similarity=0.574 Sum_probs=121.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|+.++|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888899988887778888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----ccCCChhHHHHHhhhcceE--EEEee
Q 031411 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES----KREAPFCLHETILLTVQVH--LVILK 159 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~----~~~~~~~~~~~~~~~~~~~--~~~~k 159 (160)
|++++.+|+.+.+|+..+.+..+...| ++++||+|+... ......++++++++.+++. .+|||
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk 149 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTS 149 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCC
Confidence 999999999999999999877665677 578999999521 1222346788888887754 45554
No 33
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=1.2e-29 Score=173.18 Aligned_cols=143 Identities=47% Similarity=0.889 Sum_probs=123.0
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEEC----------CEEEEEEEecCCCcccccccch
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----------GKRIKLQIWDTAGQERFRTITT 82 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~D~~g~~~~~~~~~ 82 (160)
++.+||+++|+++||||||++++.++.+...+.++.+.++....+... +..+.+.+||++|++++..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 456999999999999999999999999988888888877766555553 4568999999999999999999
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
.+++++|++++|||++++++|+.+..|+..+.... ..+.|+++++||+|+. ..+.+..+++++++.++++.++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~ 155 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE-DQRQVSEEQAKALADKYGIPYF 155 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch-hcCccCHHHHHHHHHHcCCeEE
Confidence 99999999999999999999999999999997754 3478999999999997 4456677889999998876543
No 34
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=1.1e-29 Score=172.48 Aligned_cols=140 Identities=28% Similarity=0.476 Sum_probs=121.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|+.++..++..++.++|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999998877777776433 44567788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
||.+++.+|+.+..|+..+.+.. ..++|+++++||+|+. ..+++..++++++++++++.++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~-~~~~v~~~~~~~~a~~~~~~~~ 142 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE-SQRQVTTEEGRNLAREFNCPFF 142 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh-hcCccCHHHHHHHHHHhCCEEE
Confidence 99999999999999988887653 3579999999999997 4466788899999998887665
No 35
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=1.6e-29 Score=169.65 Aligned_cols=142 Identities=46% Similarity=0.811 Sum_probs=125.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988877888887777777888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEEe
Q 031411 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVIL 158 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (160)
|++++++++.+..|+..+......+.|+++++||.|+. ....+..+++..++...++.++..
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~ 142 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA-DQREVTFLEASRFAQENGLLFLET 142 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc-hhccCCHHHHHHHHHHcCCEEEEE
Confidence 99999999999999999887776789999999999997 355677888888888887655543
No 36
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=1e-29 Score=178.34 Aligned_cols=140 Identities=23% Similarity=0.496 Sum_probs=120.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
++||+|+|++++|||||++++..+.+...+.++.+..+. ..+..++..+.+.+||++|++.|..++..+++++|++++|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 479999999999999999999999999888888875553 5677888899999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------ccCCChhHHHHHhhhcce-EEE
Q 031411 95 YDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES-----------KREAPFCLHETILLTVQV-HLV 156 (160)
Q Consensus 95 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~ 156 (160)
||++++++|+.+. .|...+....+ +.|+++|+||+|+.++ ...+..++++++++++++ .|+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~~-~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~ 153 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFCP-NAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYV 153 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEE
Confidence 9999999999994 57777765554 7999999999999642 124778899999999985 453
No 37
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=1.7e-29 Score=177.56 Aligned_cols=140 Identities=27% Similarity=0.514 Sum_probs=121.1
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++++..++..++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67799999999999999999999999998888889888877777777777899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
+|||.+++.+|+.+..|+..+.+... +.|+++++||+|+.+ ..+..+++ +++...++.|+
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~--~~v~~~~~-~~~~~~~~~~~ 150 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQYY 150 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhhhh--ccCCHHHH-HHHHhcCCEEE
Confidence 99999999999999999999987654 799999999999953 23334444 67777666554
No 38
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=1.3e-29 Score=172.43 Aligned_cols=142 Identities=29% Similarity=0.554 Sum_probs=121.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|+++||||||+.++..+.+...+.++.. +.+...+..++..+++.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 6999999999999999999999998888777775 344456677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------cCCChhHHHHHhhhcce---EEEEee
Q 031411 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------REAPFCLHETILLTVQV---HLVILK 159 (160)
Q Consensus 96 d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~~---~~~~~k 159 (160)
|++++++|+.+. .|+..+....+ +.|+++++||+|+.+.. ..+..++++++++++++ ..+|||
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 999999999996 69888876654 79999999999996432 35788999999999885 445554
No 39
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=2.1e-29 Score=169.76 Aligned_cols=140 Identities=29% Similarity=0.673 Sum_probs=123.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888898888887788888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 96 DVTDESSFNNIRNWIRNIEQHAS-----DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~-----~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|.+++++++.+..|+..+..... .+.|+++++||+|+.+ ......++.++++.+.++.++
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK-HRAVSEDEGRLWAESKGFKYF 145 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc-ccccCHHHHHHHHHHcCCeEE
Confidence 99999999999999999987653 4689999999999963 456677888888887765443
No 40
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=3.4e-29 Score=169.80 Aligned_cols=140 Identities=36% Similarity=0.677 Sum_probs=120.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (160)
||+++|+++||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++++..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998888998888877788888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcc-CCChhHHHHHhhhcceEEE
Q 031411 97 VTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKR-EAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~~~~-~~~~~~~~~~~~~~~~~~~ 156 (160)
++++++++.+..|+..+.+. .+.+.|+++|+||.|+.+... ....+++++++.++++.++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYW 143 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEE
Confidence 99999999999999998654 345678999999999964422 3445667788887766433
No 41
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=4.4e-29 Score=175.17 Aligned_cols=146 Identities=45% Similarity=0.843 Sum_probs=129.9
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcE
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (160)
+.++.+||+++|++++|||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|++++..++..+++++++
T Consensus 8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 35577999999999999999999999998887788888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+++|||++++.+|+.+..|+..+......++|+++++||+|+. ..+.+..++++.++..+++.++.
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~-~~~~~~~~~~~~l~~~~~~~~~e 153 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN-HLRSVAEEDGQALAEKEGLSFLE 153 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc-cccCCCHHHHHHHHHHcCCEEEE
Confidence 9999999999999999999999988776789999999999996 45667778888998887765554
No 42
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=4.5e-29 Score=171.65 Aligned_cols=140 Identities=47% Similarity=0.830 Sum_probs=123.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 48999999999999999999999988777888887777777888888899999999999999989999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|++++++|+.+..|+..+......+.|+++++||.|+. ....+..+++++++...++.++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~ 140 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV-NNKVVDSNIAKSFCDSLNIPFF 140 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc-ccccCCHHHHHHHHHHcCCeEE
Confidence 99999999999999999988766678999999999997 4455677788888887765443
No 43
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=4.3e-29 Score=167.76 Aligned_cols=142 Identities=53% Similarity=0.923 Sum_probs=125.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++++|||||++++.+..+.....++.+.++....+..++..+.+.+||+||+..+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999888777888888777778888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEEe
Q 031411 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVIL 158 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (160)
|++++.+++.+..|+..+..+...++|+++++||+|+. ...+...+++++++..+++.++..
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~e~ 142 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE-DQRQVSREEAEAFAEEHGLPFFET 142 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc-cccCCCHHHHHHHHHHcCCeEEEE
Confidence 99999999999999999988775689999999999986 345667788888988877765543
No 44
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=3.6e-29 Score=167.97 Aligned_cols=139 Identities=37% Similarity=0.669 Sum_probs=121.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEEC--CEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
+||+++|++++|||||++++..+.+...+.++.+.++....+... +..+.+.+||+||++++..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999998887778888877766666666 677899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|||++++++++.+..|+..+..... ++|+++++||+|+. ....+..+++++++...++.++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~ 141 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLL-DQAVITNEEAEALAKRLQLPLF 141 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcc-cccCCCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999876655 79999999999996 3445667888889988876554
No 45
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=6.1e-29 Score=168.26 Aligned_cols=139 Identities=38% Similarity=0.679 Sum_probs=122.7
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
+..+||+++|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++++..++..+++++|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 46699999999999999999999999988877788887777777888998999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcce
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKILVGNKADMDESKREAPFCLHETILLTVQV 153 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (160)
+|||.+++++++.+..|+..+.... ..+.|+++++||+|+. ...+..+++++++.++++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~ 145 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP--ERQVSTEEAQAWCRENGD 145 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc--ccccCHHHHHHHHHHCCC
Confidence 9999999999999999999886644 2468999999999995 456678889999988764
No 46
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=5.4e-29 Score=167.20 Aligned_cols=138 Identities=33% Similarity=0.573 Sum_probs=117.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++|+|||||++++..+.+...+.++.+ +.....+..++..+.+.+||++|++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888777667665 344566777888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEE
Q 031411 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHL 155 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (160)
|.+++.+++.+..|+..+.... ..+.|+++++||+|+.+ ...+..+++.++++.+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~ 140 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED-ERVVSREEGQALARQWGCPF 140 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceecHHHHHHHHHHcCCeE
Confidence 9999999999999999987754 35789999999999963 44566677788888766543
No 47
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=8.1e-29 Score=167.85 Aligned_cols=141 Identities=45% Similarity=0.848 Sum_probs=122.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccccc-ccchhhccCCcEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILL 93 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i~ 93 (160)
.+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999998887788888877777788888888999999999998876 577888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|||++++++++.+..|+..+.... ..++|+++++||+|+. ....+..+++++++...++.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~ 144 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR-EQIQVPTDLAQRFADAHSMPLF 144 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch-hhcCCCHHHHHHHHHHcCCcEE
Confidence 999999999999999999997764 3579999999999997 4566677888889888765554
No 48
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=7.7e-29 Score=173.90 Aligned_cols=143 Identities=33% Similarity=0.566 Sum_probs=124.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECC-EEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
+||+++|++++|||||+++|..+.+...+.++.+.++....+..++ ..+.+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888899999888877777754 568999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEE--EEee
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHAS---DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHL--VILK 159 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~---~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~k 159 (160)
||++++++|+.+..|+..+.+... .+.|+++++||+|+. ..+.+..+++++++..+++.+ +|||
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~-~~~~v~~~~~~~~~~~~~~~~~~iSAk 149 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE-HNRTVKDDKHARFAQANGMESCLVSAK 149 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEECC
Confidence 999999999999999999987643 356899999999996 456677888999998887544 4543
No 49
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=8.7e-29 Score=170.70 Aligned_cols=141 Identities=50% Similarity=0.901 Sum_probs=121.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
+||+++|++++|||||++++..+.+.. .+.++.+.++....+.+++..+.+.+||+||++++...+..++.++|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 489999999999999999999988753 5667777666666778888889999999999999988888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
||++++++++.+..|+..+......++|+++++||+|+. ..+.+..+++++++..+++.++.
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~-~~~~~~~~~~~~l~~~~~~~~~e 142 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS-GERVVKREDGERLAKEYGVPFME 142 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch-hccccCHHHHHHHHHHcCCeEEE
Confidence 999999999999999999988776789999999999996 34556677888888887655443
No 50
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=1.2e-28 Score=165.27 Aligned_cols=140 Identities=37% Similarity=0.697 Sum_probs=123.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|+++||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+.++..++..++.++|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|++++++|+.+..|+..+......+.|+++++||+|+. .......++...++...++.++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~ 140 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS-DKRQVSTEEGEKKAKELNAMFI 140 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc-ccCccCHHHHHHHHHHhCCEEE
Confidence 99999999999999999876655579999999999996 4455677778888877765544
No 51
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=1.5e-28 Score=171.87 Aligned_cols=146 Identities=47% Similarity=0.833 Sum_probs=128.2
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
.++.+||+++|++++|||||++++....+...+.++.+.++....+..++..+.+.+||++|++.+..++..++..+|++
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34679999999999999999999999888877778888777777788888888999999999999998899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEEe
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVIL 158 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (160)
++|||++++++++.+.+|+..+......+.|+++++||+|+. ....+..++++++++++++.++..
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~ 148 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA-HRRAVSTEEGEQFAKEHGLIFMEA 148 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc-cccCCCHHHHHHHHHHcCCEEEEE
Confidence 999999999999999999998877766689999999999997 445677888999999888766543
No 52
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.1e-28 Score=172.53 Aligned_cols=142 Identities=44% Similarity=0.777 Sum_probs=123.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEE-CCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
.+||+++|++++|||||++++.++.+...+.++.+.++....+.. ++..+.+.+||++|++++..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999888777888887777777766 4667899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
|||++++++|+.+.+|+..+..... ...|++|++||+|+. ....+..+++.++++.+++.++.
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e 145 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE-SQRQVTREEAEKLAKDLGMKYIE 145 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc-cccccCHHHHHHHHHHhCCEEEE
Confidence 9999999999999999999977643 467899999999997 45667788899999988766554
No 53
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=1.3e-28 Score=165.76 Aligned_cols=139 Identities=32% Similarity=0.576 Sum_probs=117.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..+++++|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 6999999999999999999998888776667665433 456777888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|.+++.+|+.+.+|+..+.... ..+.|+++++||+|+.+ ......++++++++..++.++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWGCAFL 141 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh-ccEEcHHHHHHHHHHhCCEEE
Confidence 9999999999999999987653 35799999999999973 344566667888877766544
No 54
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=1.7e-28 Score=164.92 Aligned_cols=140 Identities=31% Similarity=0.538 Sum_probs=118.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
++||+++|.+|+|||||++++..+.+...+.++.+ +.....+..++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999988877766664 45556677788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
||.+++.+++.+..|+..+.... ..++|+++++||+|+.+ ...+..++...++...++.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~ 141 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES-EREVSSAEGRALAEEWGCPFM 141 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cCccCHHHHHHHHHHhCCEEE
Confidence 99999999999999999987754 35789999999999963 445666678888877766544
No 55
>PLN00023 GTP-binding protein; Provisional
Probab=99.97 E-value=8.9e-29 Score=179.70 Aligned_cols=146 Identities=23% Similarity=0.423 Sum_probs=124.9
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEEC-------------CEEEEEEEecCCCccc
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-------------GKRIKLQIWDTAGQER 76 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~g~~~ 76 (160)
.+....+||+|+|+.+||||||++++.++.+...+.++.+.++....+.++ +..+.+.|||++|+++
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 445567999999999999999999999999888888888887776666654 2468899999999999
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC------------CCCcEEEEEeCCCCCCCc--cC---C
Q 031411 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS------------DNVNKILVGNKADMDESK--RE---A 139 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~------------~~~pi~vv~~K~Dl~~~~--~~---~ 139 (160)
+..++..++++++++|+|||++++.+|+.+.+|+..+..+.. .++|++||+||+||.++. +. +
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~ 175 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN 175 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence 999999999999999999999999999999999999987631 258999999999996442 22 3
Q ss_pred ChhHHHHHhhhcceEE
Q 031411 140 PFCLHETILLTVQVHL 155 (160)
Q Consensus 140 ~~~~~~~~~~~~~~~~ 155 (160)
..+++++||+++++..
T Consensus 176 ~~e~a~~~A~~~g~l~ 191 (334)
T PLN00023 176 LVDAARQWVEKQGLLP 191 (334)
T ss_pred cHHHHHHHHHHcCCCc
Confidence 6899999999988654
No 56
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=2.2e-28 Score=168.43 Aligned_cols=139 Identities=33% Similarity=0.528 Sum_probs=119.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 48999999999999999999999988777777776444 45667788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEE
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHL 155 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (160)
||++++++|+.+..|+..+.+.. ..++|+++++||+|+. ....+..+++.+++..+++.+
T Consensus 84 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~-~~~~i~~~~~~~~~~~~~~~~ 144 (189)
T PTZ00369 84 YSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD-SERQVSTGEGQELAKSFGIPF 144 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-cccccCHHHHHHHHHHhCCEE
Confidence 99999999999999999987654 3578999999999996 445566777888888776543
No 57
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.96 E-value=1.7e-28 Score=172.12 Aligned_cols=132 Identities=30% Similarity=0.586 Sum_probs=112.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|.+++|||||++++..+.+.. +.++.+.++....+ ..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998864 45666655443322 3478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------------CccCCChhHHHHHhhhcc
Q 031411 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE------------------SKREAPFCLHETILLTVQ 152 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~------------------~~~~~~~~~~~~~~~~~~ 152 (160)
|++++++|+.+..|+..+.+....+.|+++|+||+|+.+ ..+.+..+++++++++.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~ 150 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRIN 150 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhC
Confidence 999999999999998888776556789999999999964 257788999999999876
No 58
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.4e-28 Score=170.51 Aligned_cols=141 Identities=22% Similarity=0.404 Sum_probs=116.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEEC-----CEEEEEEEecCCCcccccccchhhccCCcE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-----GKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (160)
+||+++|+.++|||||++++.++.+...+.++.+.++....+.++ +..+.+.+||++|++++..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888888877766666653 467899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-------------------CCCCcEEEEEeCCCCCCCccCCChh----HHHHH
Q 031411 91 ILLVYDVTDESSFNNIRNWIRNIEQHA-------------------SDNVNKILVGNKADMDESKREAPFC----LHETI 147 (160)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-------------------~~~~pi~vv~~K~Dl~~~~~~~~~~----~~~~~ 147 (160)
+|+|||++++.+|+.+..|+.++.... ..++|++|||||+|+.+ .+.+..+ ....+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~-~r~~~~~~~~~~~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP-EKESSGNLVLTARGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh-hcccchHHHhhHhhhH
Confidence 999999999999999999999997631 24689999999999963 2333332 34566
Q ss_pred hhhcceEEEE
Q 031411 148 LLTVQVHLVI 157 (160)
Q Consensus 148 ~~~~~~~~~~ 157 (160)
+.+.++..+.
T Consensus 160 a~~~~~~~i~ 169 (202)
T cd04102 160 AEQGNAEEIN 169 (202)
T ss_pred HHhcCCceEE
Confidence 6677766554
No 59
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=2.9e-28 Score=163.81 Aligned_cols=139 Identities=32% Similarity=0.551 Sum_probs=115.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++++|||||++++.++.+.+.+.++.+.+........++..+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888777677666666666777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcce--EEEEee
Q 031411 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQV--HLVILK 159 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~k 159 (160)
|.+++.+++.+..|+..+.+..+ +.|+++++||+|+.+. ..++..+++...++ ..+|+|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~Sa~ 141 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS----VTQKKFNFAEKHNLPLYYVSAA 141 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh----HHHHHHHHHHHcCCeEEEEeCC
Confidence 99999999999999999977554 7899999999998522 23445666666554 344443
No 60
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.96 E-value=5.7e-28 Score=162.27 Aligned_cols=142 Identities=42% Similarity=0.724 Sum_probs=123.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.+||+++|++++|||||++++.++.+.....++.+..+....+..++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999988776777777667777888888889999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+|++++++++.+..|+..+......+.|+++++||+|+. .......++..+++..+++.++.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~ 142 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE-SKRQVSTEEAQEYADENGLLFFE 142 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-ccCcCCHHHHHHHHHHcCCEEEE
Confidence 999999999999999999988765689999999999987 34556777888888887755443
No 61
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.7e-29 Score=164.00 Aligned_cols=146 Identities=45% Similarity=0.778 Sum_probs=132.6
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEE-CCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
.+.++++++|++-+|||+|++.+..+++.+-.+|+.+.+++...+.. .|.++++++|||.|++++..+..+++++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 46789999999999999999999999999999999999998887777 57789999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEEee
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVILK 159 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~k 159 (160)
+++||+++.++|+.+..|+.+...+. +..+-+.+||+|+||. ..++++.+|++++++.+++.|+...
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~-SqRqVt~EEaEklAa~hgM~FVETS 154 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ-SQRQVTAEEAEKLAASHGMAFVETS 154 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh-hhccccHHHHHHHHHhcCceEEEec
Confidence 99999999999999999999986654 3344567789999998 8899999999999999999998653
No 62
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=6.4e-28 Score=166.51 Aligned_cols=140 Identities=29% Similarity=0.613 Sum_probs=118.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
+||+++|++++|||||++++..+.+.. .+.++.+..+....+..++..+.+.+||++|++++..++..++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988864 5677777677677788899889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc---cCCChhHHHHHhhhcceEEE
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK---REAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~---~~~~~~~~~~~~~~~~~~~~ 156 (160)
||++++++++.+..|+..+..... +.|+++++||+|+.+.. ..+..+++++++..+++.++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~ 144 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEE-HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHF 144 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEE
Confidence 999999999999999999877544 78999999999985432 35556778888877665433
No 63
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=3.2e-28 Score=167.63 Aligned_cols=141 Identities=28% Similarity=0.537 Sum_probs=117.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (160)
||+++|++|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+..++..++.++|++++|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 899999999999999999999998887777776554 3455667878899999999999999999899999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-----------CCChhHHHHHhhhcc-e--EEEEee
Q 031411 97 VTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESKR-----------EAPFCLHETILLTVQ-V--HLVILK 159 (160)
Q Consensus 97 ~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~-----------~~~~~~~~~~~~~~~-~--~~~~~k 159 (160)
++++++|+.+. .|+..+....+ +.|+++++||+|+.+... .+..+++.+++.+.+ + ..+|||
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 157 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAK 157 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCC
Confidence 99999999986 59998887654 799999999999964321 356677888888766 3 344554
No 64
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=7.9e-28 Score=162.50 Aligned_cols=140 Identities=29% Similarity=0.625 Sum_probs=117.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++|||||||++++..+.+...+.++.+.+.....+..++..+.+.+||++|++.+..++..++..+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 48999999999999999999988888777888877776666677788899999999999999998899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcce--EEEEee
Q 031411 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQV--HLVILK 159 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~k 159 (160)
|.+++++++.+..|+..+..... +.|+++++||+|+.+ ..+. .+..+++...++ ..+|||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~--~~~~-~~~~~~~~~~~~~~~e~Sa~ 142 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD--RKVK-AKQITFHRKKNLQYYEISAK 142 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc--ccCC-HHHHHHHHHcCCEEEEEeCC
Confidence 99999999999999999988766 899999999999962 2222 345566666554 444443
No 65
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=2.7e-28 Score=167.57 Aligned_cols=136 Identities=29% Similarity=0.602 Sum_probs=114.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEEC-CEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
+||+++|++++|||||++++.++.+...+.++.+.++. ..+... +..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 48999999999999999999999988777777765543 334454 6778999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc---cCCChhHHHHHhhhcce
Q 031411 95 YDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK---REAPFCLHETILLTVQV 153 (160)
Q Consensus 95 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~---~~~~~~~~~~~~~~~~~ 153 (160)
||.+++++|+.+. .|+..+....+ +.|+++++||+|+.+.. ..+..+++++++..+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~ 141 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCP-GTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA 141 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC
Confidence 9999999999996 48888876544 78999999999986332 35677889999988876
No 66
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.96 E-value=4.8e-28 Score=164.50 Aligned_cols=136 Identities=30% Similarity=0.565 Sum_probs=116.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+|++++|++|+|||||++++..+.+...+.++. .+.....+..++..+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988887777765 3455556778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------ccCCChhHHHHHhhhcce
Q 031411 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES-----------KREAPFCLHETILLTVQV 153 (160)
Q Consensus 96 d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~ 153 (160)
|.+++++|+.+. .|+..+....+ +.|+++++||+|+.+. .+.+..+++++++++.++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 148 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNP-KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGA 148 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCC
Confidence 999999999985 68888876443 7899999999999643 456788889999998765
No 67
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=2.8e-28 Score=168.03 Aligned_cols=139 Identities=27% Similarity=0.506 Sum_probs=117.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (160)
||+++|.+|+|||||++++..+.+...+.++.+..+ ......++..+.+.+||++|++++..++..+++++|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999888777777766433 3456677888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 97 VTDESSFNNIRNWIRNIEQHAS---DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~---~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
.+++.+|+.+..|+..+..... .+.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e 142 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV-YEREVSTEEGAALARRLGCEFIE 142 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc-ccCccCHHHHHHHHHHhCCEEEE
Confidence 9999999999999998876532 478999999999996 44566777788888887765443
No 68
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.96 E-value=9e-28 Score=161.40 Aligned_cols=140 Identities=34% Similarity=0.551 Sum_probs=117.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.+||+++|++++|||||++++.++.+...+.++.+.. .......++..+.+.+||+||++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4799999999999999999999988776666666533 345567788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
||++++.+++.+..|+..+.+.. ..+.|+++++||+|+. ....+..+++.+++...++.++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE-HQRKVSREEGQELARKLKIPYI 142 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc-ccceecHHHHHHHHHHcCCcEE
Confidence 99999999999999999987653 3578999999999997 3445666778888887665443
No 69
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=7.2e-28 Score=163.13 Aligned_cols=144 Identities=22% Similarity=0.280 Sum_probs=118.6
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
.+.+||+++|++|+|||||++++.++.+. ..+.++.+..+....+..++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999987 77888887666666677788888999999999999988899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcce---EEEEee
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQV---HLVILK 159 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~k 159 (160)
++|||++++.+++.+.+|+..+.. ..++|+++++||+|+.+. .....++.+++++.+++ ..+||+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQ-QQRYEVQPDEFCRKLGLPPPLHFSSK 149 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEccccccc-ccccccCHHHHHHHcCCCCCEEEEec
Confidence 999999999999999999886632 237899999999999633 33334456677777654 456654
No 70
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.96 E-value=9.6e-28 Score=160.72 Aligned_cols=138 Identities=30% Similarity=0.517 Sum_probs=116.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++|+|||||++++.++.+...+.++.+.. ....+..++..+.+.+||++|++++..++..++++++++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 699999999999999999999988877777766533 3455677887788999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|.+++.+++.+..|+..+.+.. ..+.|+++++||+|+.+ .....+++.+++...++.++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~ 140 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVSSRQGQDLAKSYGIPYI 140 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc--ceecHHHHHHHHHHhCCeEE
Confidence 9999999999999999987764 35789999999999964 45566778888877765443
No 71
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=7.5e-28 Score=161.91 Aligned_cols=139 Identities=37% Similarity=0.586 Sum_probs=116.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++|+|||||++++.++.+...+.++.+ +........++..+.+.+||+||++++..++..++.++|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999888776666665 334456677787889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|++++++++.+..|...+.+.. ..+.|+++++||+|+. ..+....+++.+++...++.++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE-SERVVSTEEGKELARQWGCPFL 140 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccceEcHHHHHHHHHHcCCEEE
Confidence 9999999999999998887653 3478999999999997 3455666778888887775444
No 72
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.96 E-value=1.1e-27 Score=161.50 Aligned_cols=142 Identities=29% Similarity=0.426 Sum_probs=117.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..++.+++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 6899999999999999999999988777777665333 344566777789999999999999988888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEE--EEee
Q 031411 96 DVTDESSFNNIRNWIRNIEQHAS---DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHL--VILK 159 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~---~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~k 159 (160)
|++++++++.+..|+..+..... .++|+++++||+|+. ..+++..++++.++...++.+ +|||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~SA~ 148 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES-HKREVSSNEGAACATEWNCAFMETSAK 148 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc-ccCeecHHHHHHHHHHhCCcEEEeecC
Confidence 99999999999999888766432 478999999999997 345567777888888776544 4554
No 73
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.96 E-value=1.9e-27 Score=159.54 Aligned_cols=140 Identities=49% Similarity=0.895 Sum_probs=121.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++++|||||++++.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++++|+++++|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887767777777777677777888889999999999999988899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
|++++.+++.+..|++.+..+. ..+.|+++++||+|+. ......++..+++.++++.++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~ 141 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE--NREVTREEGLKFARKHNMLFIE 141 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc--ccccCHHHHHHHHHHcCCEEEE
Confidence 9999999999999999998775 3578999999999996 3455667888888888866554
No 74
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.96 E-value=8.4e-28 Score=166.55 Aligned_cols=143 Identities=22% Similarity=0.369 Sum_probs=113.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccccccc--------chhhccC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYYRG 87 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~ 87 (160)
+||+++|.++||||||++++.++.+...+.++.+.+.....+..++..+.+.+|||||...+... ....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999988777787776665566777888899999999997544221 2234789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCccCCChhHHHHHhh-hcce--EEEEee
Q 031411 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKILVGNKADMDESKREAPFCLHETILL-TVQV--HLVILK 159 (160)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~-~~~~--~~~~~k 159 (160)
+|++++|||++++++|+.+..|+..+.... ..++|+++++||+|+.+ .+.+..++.++++. ..++ ..+|||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR-HRFAPRHVLSVLVRKSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc-cccccHHHHHHHHHHhcCCcEEEecCC
Confidence 999999999999999999999999887764 35799999999999973 34556666777764 4455 555654
No 75
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.96 E-value=7.9e-28 Score=163.32 Aligned_cols=134 Identities=30% Similarity=0.627 Sum_probs=114.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEEC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 97 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (160)
|+++|++++|||||++++..+.+...+.++.... ....+..++..+.+.+||++|++.+..++..+++++|++++|||.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 5899999999999999999999887777766543 345667788888999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------cCCChhHHHHHhhhcce
Q 031411 98 TDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------REAPFCLHETILLTVQV 153 (160)
Q Consensus 98 ~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~~ 153 (160)
+++++|+.+. .|+..+....+ +.|+++++||+|+.++. ..+..++++++++++++
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 146 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGA 146 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCC
Confidence 9999999986 59998877655 79999999999996422 24777888999999875
No 76
>PLN03118 Rab family protein; Provisional
Probab=99.96 E-value=2.8e-27 Score=165.52 Aligned_cols=146 Identities=47% Similarity=0.796 Sum_probs=121.6
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
.++.+..+||+++|++++|||||++++....+. .+.++.+.++....+..++..+.+.+||+||++++..++..+++++
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 455667899999999999999999999988764 4567777777777778888888999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHH-HHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 89 MGILLVYDVTDESSFNNIRN-WIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|++++|||++++++|+.+.. |...+.... ..+.|+++++||+|+. ....+..++..+++.++++.++
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~-~~~~i~~~~~~~~~~~~~~~~~ 155 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE-SERDVSREEGMALAKEHGCLFL 155 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccCccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999976 666665443 2467999999999997 3445677788888888877655
No 77
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=2.2e-27 Score=159.68 Aligned_cols=138 Identities=28% Similarity=0.595 Sum_probs=114.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeeeEEEEEEEEC-CEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
+||+++|+++||||||++++..+ .+...+.++.+.++....+..+ +..+++.+||++|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999864 5777778888777766666664 56789999999999999998999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEE
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHL 155 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (160)
+|||++++++++.+..|+..+..... +.|+++++||+|+. ...++...+++.++...++.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASK-HMPGVLVGNKMDLA-DKAEVTDAQAQAFAQANQLKF 141 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccc-cccCCCHHHHHHHHHHcCCeE
Confidence 99999999999999999999887653 68999999999996 334456666677776665543
No 78
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=4.1e-27 Score=157.64 Aligned_cols=140 Identities=37% Similarity=0.714 Sum_probs=118.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++++|||||++++.++.+.....++.+.......+...+..+.+.+||++|+..+..++..++.++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998877666666655566666777777789999999999999989999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|++++++++.+..|+..+......+.|+++++||+|+. .......++..+++...++.++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~ 140 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE-RQRVVSKSEAEEYAKSVGAKHF 140 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEE
Confidence 99999999999999999988766689999999999997 4445566777777777665433
No 79
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.96 E-value=3.7e-27 Score=159.53 Aligned_cols=136 Identities=39% Similarity=0.711 Sum_probs=117.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++++|||||++++.+..+.....++.+.++....+..++..+.+.+||+||++.+..++..+++++|+++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887777777777777777888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcc
Q 031411 96 DVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMDESKREAPFCLHETILLTVQ 152 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~----~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~ 152 (160)
|++++.+++.+..|...+..... .+.|+++++||+|+.+ ......++.+.++...+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~ 140 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE-KRQVSTKKAQQWCQSNG 140 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc-ccccCHHHHHHHHHHcC
Confidence 99999999999999888755432 3789999999999973 45556777788887765
No 80
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=1.9e-27 Score=169.62 Aligned_cols=142 Identities=25% Similarity=0.388 Sum_probs=118.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++++|||||++++..+.+...+.++.+ ++....+..++..+.+.+|||+|++.+..++..++..+|++++||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999988877777765 555667788888899999999999998888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh---------cCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhc-c--eEEEEee
Q 031411 96 DVTDESSFNNIRNWIRNIEQH---------ASDNVNKILVGNKADMDESKREAPFCLHETILLTV-Q--VHLVILK 159 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~---------~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~-~--~~~~~~k 159 (160)
|++++++|+.+..|+..+... ...+.|+++++||+|+.+ ..++..+++.+++... + ...+|||
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~-~~~v~~~ei~~~~~~~~~~~~~evSAk 154 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF-PREVQRDEVEQLVGGDENCAYFEVSAK 154 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh-ccccCHHHHHHHHHhcCCCEEEEEeCC
Confidence 999999999999999998654 224789999999999973 4567788888877642 3 3555554
No 81
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.96 E-value=2.9e-27 Score=163.81 Aligned_cols=133 Identities=27% Similarity=0.573 Sum_probs=115.0
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCCh
Q 031411 21 IGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE 100 (160)
Q Consensus 21 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (160)
+|+++||||||++++..+.+...+.++.+.++....+..+++.+.+.+||++|++++..++..+++++|++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888888888888878888888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 101 SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
.+|+.+..|+..+.+... ++|+++++||+|+.. ..+..+ ..+++...++.|+.
T Consensus 81 ~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~--~~v~~~-~~~~~~~~~~~~~e 133 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD--RKVKAK-SITFHRKKNLQYYD 133 (200)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc--ccCCHH-HHHHHHHcCCEEEE
Confidence 999999999999988765 899999999999953 233333 34677776655543
No 82
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.96 E-value=4.9e-27 Score=156.32 Aligned_cols=141 Identities=50% Similarity=0.903 Sum_probs=123.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++++|||||++++.+..+...+.++.+.++....+..++....+.+||+||+..+...+..+++++|++++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988877888888888888888888889999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
|++++++++.+..|+..+......+.|+++++||+|+. .......++.++++.++++.++.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~ 141 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE-DQRQVSTEEAQQFAKENGLLFFE 141 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc-ccccccHHHHHHHHHHcCCeEEE
Confidence 99999999999999999988775679999999999996 34556678888888876655544
No 83
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.3e-26 Score=156.57 Aligned_cols=147 Identities=49% Similarity=0.831 Sum_probs=121.8
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
.+..++++++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||++|+..+...+..++..+|++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999998887777777777777777788888888999999999999998888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcc--eEEEEee
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQ--VHLVILK 159 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~k 159 (160)
++|||.+++.+++.+..|+..+......++|+++++||+|+. ...++..+..+.+..... +..+|+|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~-~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 152 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA-ERREVSQQRAEEFSDAQDMYYLETSAK 152 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-cccccCHHHHHHHHHHcCCeEEEeeCC
Confidence 999999999999999999999987766689999999999996 334445555566665544 4444443
No 84
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.96 E-value=4.6e-27 Score=157.54 Aligned_cols=137 Identities=20% Similarity=0.308 Sum_probs=111.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|+.|+|||||+.++..+.+...+.++.+ .+...+..++..+.+.+||++|++. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~--~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG--RFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc--ceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 4899999999999999999998888766544432 2346678888888999999999864 34567899999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC-CccCCChhHHHHHhhhcc-e--EEEEee
Q 031411 96 DVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDE-SKREAPFCLHETILLTVQ-V--HLVILK 159 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~-~~~~~~~~~~~~~~~~~~-~--~~~~~k 159 (160)
|.+++.+|+.+..|+..+..+.. .++|+++++||.|+.. ..+++..+++++++++++ + ..+|||
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 142 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCAT 142 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecC
Confidence 99999999999999999987753 5789999999999853 456788888899997753 4 445554
No 85
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.96 E-value=5.9e-27 Score=159.05 Aligned_cols=136 Identities=25% Similarity=0.558 Sum_probs=114.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++++|||||++++..+.+...+.++.. +.....+..++..+.+.+||++|++.+..++..++.++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988766666654 334456677888888999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------cCCChhHHHHHhhhcce
Q 031411 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------REAPFCLHETILLTVQV 153 (160)
Q Consensus 96 d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~~ 153 (160)
|..++.+|+.+. .|+..+... ..+.|+++++||+|+.+.. ..+..++++++++..++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 148 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGA 148 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 999999999986 588888765 4589999999999986432 35777889999988875
No 86
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=2.9e-27 Score=159.40 Aligned_cols=138 Identities=33% Similarity=0.458 Sum_probs=112.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccc-ccccchhhccCCcEEEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~~i~v~ 95 (160)
||+++|++++|||||++++..+.+...+.++.... ....+..++..+.+.+||+||+.. .......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 58999999999999999999887766666655433 345567788888999999999885 3445677889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 96 DVTDESSFNNIRNWIRNIEQHA--SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~--~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|++++++|+.+..|+..+.... ..+.|+++++||+|+. ....+..+++++++..+++.++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~ 141 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL-HYRQVSTEEGEKLASELGCLFF 141 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH-HhCccCHHHHHHHHHHcCCEEE
Confidence 9999999999999998887754 3579999999999986 3456677888899988777654
No 87
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-29 Score=163.82 Aligned_cols=149 Identities=47% Similarity=0.873 Sum_probs=135.3
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEEC---------CEEEEEEEecCCCcccccc
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD---------GKRIKLQIWDTAGQERFRT 79 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~D~~g~~~~~~ 79 (160)
..++++.+|++.+|++|+|||||+.++..+.|.....++.++++..+.+.++ +.++.+++|||.|++++..
T Consensus 3 ~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS 82 (219)
T KOG0081|consen 3 DGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS 82 (219)
T ss_pred CccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH
Confidence 3567888999999999999999999999999999999999999988877663 2458999999999999999
Q ss_pred cchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEEe
Q 031411 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVIL 158 (160)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (160)
+..++++++.+++++||++++.||-+++.|+.++..+. .++.-|++++||+||+ +.+++..+++.+++.+++++|+..
T Consensus 83 LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~-~~R~Vs~~qa~~La~kyglPYfET 161 (219)
T KOG0081|consen 83 LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLE-DQRVVSEDQAAALADKYGLPYFET 161 (219)
T ss_pred HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchh-hhhhhhHHHHHHHHHHhCCCeeee
Confidence 99999999999999999999999999999999997764 3577899999999998 888999999999999999999864
No 88
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=7.1e-27 Score=161.47 Aligned_cols=139 Identities=24% Similarity=0.380 Sum_probs=109.9
Q ss_pred eEEEEEEcCCCCCHHHHHH-HHhcCC-----CCCccccceee-eEEEEE--------EEECCEEEEEEEecCCCcccccc
Q 031411 15 LIKLLLIGDSGVGKSCLLL-RFSDGS-----FTTSFITTIGI-DFKIRT--------IELDGKRIKLQIWDTAGQERFRT 79 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~D~~g~~~~~~ 79 (160)
.+||+++|+.++|||||+. ++.++. +...+.++.+. +.+... ...++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 3799999999999999995 665443 34555666642 222222 25678889999999999875 3
Q ss_pred cchhhccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------------ccCCC
Q 031411 80 ITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES------------------KREAP 140 (160)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~------------------~~~~~ 140 (160)
+...+++++|++++|||++++.+|+.+. .|+..+....+ +.|+++++||+||.+. .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4556789999999999999999999997 59998877664 7899999999999631 46788
Q ss_pred hhHHHHHhhhcceEEE
Q 031411 141 FCLHETILLTVQVHLV 156 (160)
Q Consensus 141 ~~~~~~~~~~~~~~~~ 156 (160)
.++++++++++++.|+
T Consensus 159 ~~e~~~~a~~~~~~~~ 174 (195)
T cd01873 159 PETGRAVAKELGIPYY 174 (195)
T ss_pred HHHHHHHHHHhCCEEE
Confidence 9999999999998665
No 89
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.95 E-value=1e-26 Score=157.19 Aligned_cols=135 Identities=35% Similarity=0.553 Sum_probs=115.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++|+|||||++++.++.+...+.++.+.. +...+..++..+.+.+||+||++++..++..++..++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 689999999999999999999988877777776633 4566677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcc
Q 031411 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQ 152 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~ 152 (160)
|.+++++++.+..|...+.+.. ..+.|+++++||.|+. .......++...+++..+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~-~~~~~~~~~~~~~~~~~~ 137 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE-DDRQVSREDGVSLSQQWG 137 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc-ccCccCHHHHHHHHHHcC
Confidence 9999999999999999887643 3579999999999997 345566677777777765
No 90
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=3.1e-28 Score=157.46 Aligned_cols=149 Identities=32% Similarity=0.654 Sum_probs=135.7
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
.......+|++++|+.-+|||||+-++..++|....-++.--.+..+.+.+.+.+..+.+|||.|+++|..+-+.++++.
T Consensus 7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS 86 (218)
T KOG0088|consen 7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS 86 (218)
T ss_pred ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence 45566789999999999999999999999999877777766667777888888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEEe
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVIL 158 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (160)
+++++|||++|+++|+.++.|..++.+.....+-+++|+||+||. .++.++.++++.++...++.|+..
T Consensus 87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE-eeR~Vt~qeAe~YAesvGA~y~eT 155 (218)
T KOG0088|consen 87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE-EERQVTRQEAEAYAESVGALYMET 155 (218)
T ss_pred CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH-HhhhhhHHHHHHHHHhhchhheec
Confidence 999999999999999999999999999888788999999999997 888999999999999999888753
No 91
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.95 E-value=2.3e-26 Score=156.24 Aligned_cols=143 Identities=30% Similarity=0.560 Sum_probs=116.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
+.||+++|+++||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|++.+..++...+.++|++++|
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 36899999999999999999999988877777765433 34567788888999999999999998888889999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------cCCChhHHHHHhhhcc---eEEEEee
Q 031411 95 YDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------REAPFCLHETILLTVQ---VHLVILK 159 (160)
Q Consensus 95 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~---~~~~~~k 159 (160)
||++++++|+.+. .|+..+.+... +.|+++++||+|+.+.. ..+..+++++++...+ ..++|||
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999885 58887766544 78999999999985321 3455677888887765 3555554
No 92
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.3e-27 Score=150.28 Aligned_cols=148 Identities=43% Similarity=0.815 Sum_probs=137.1
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCc
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (160)
-.+.+.+|.+++|+-|+|||+|++.+...+|-..-..+.+.++....+.+.+.++.+++||+.|++++....+++++++.
T Consensus 6 ynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaa 85 (215)
T KOG0097|consen 6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 85 (215)
T ss_pred cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 35678899999999999999999999999888788889999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEEe
Q 031411 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVIL 158 (160)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (160)
+.+.|||++.+.++..+..|+......-..+.-|++++||.||. ..+++..+++++|+.+.+..+..+
T Consensus 86 galmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle-~qrdv~yeeak~faeengl~fle~ 153 (215)
T KOG0097|consen 86 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE-SQRDVTYEEAKEFAEENGLMFLEA 153 (215)
T ss_pred ceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhh-hcccCcHHHHHHHHhhcCeEEEEe
Confidence 99999999999999999999999887766788999999999997 888999999999999999877654
No 93
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.95 E-value=2.4e-26 Score=161.82 Aligned_cols=138 Identities=25% Similarity=0.400 Sum_probs=112.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhcc-CCcEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR-GAMGILL 93 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-~~~~~i~ 93 (160)
+||+++|++|+|||||++++..+.+. ..+.++.+.++....+.+++....+.+||++|++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999988775 5556665545666777888888999999999987 223345566 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|||++++.+|+.+.+|+..+.... ..+.|+++|+||+|+. ....+..+++++++...++.++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~-~~~~v~~~~~~~~a~~~~~~~~ 141 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA-RSREVSVQEGRACAVVFDCKFI 141 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc-ccceecHHHHHHHHHHcCCeEE
Confidence 999999999999999999987754 3578999999999997 3456677778888887776554
No 94
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.95 E-value=6.4e-27 Score=157.76 Aligned_cols=133 Identities=21% Similarity=0.345 Sum_probs=107.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEEC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 97 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (160)
|+++|++++|||||++++.++.+...+.++.+... .. .+...+++.+||++|++++..++..+++++|++++|||.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~--i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VA--IPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EE--EeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 79999999999999999999888777777776542 22 333457899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCC----hhHHHHHhhhcceEEE
Q 031411 98 TDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAP----FCLHETILLTVQVHLV 156 (160)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~----~~~~~~~~~~~~~~~~ 156 (160)
+++.+++.+..|+..+.... .+.|+++++||+|+.+.. .+. ..++.+++.+.++.++
T Consensus 78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~ 138 (164)
T cd04162 78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAAR-SVQEIHKELELEPIARGRRWILQ 138 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCC-CHHHHHHHhCChhhcCCCceEEE
Confidence 99999999999998886544 489999999999996432 221 1235667777776653
No 95
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=4.6e-27 Score=159.37 Aligned_cols=140 Identities=31% Similarity=0.592 Sum_probs=126.1
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEEC-CEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
...+|++++|+.++|||+|+..+..+.|+..+.++.. +-+...+.++ ++.+++.+|||.||+.|++++.-.+.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999996 6677888885 9999999999999999999888899999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------ccCCChhHHHHHhhhcceE
Q 031411 92 LLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDES-----------KREAPFCLHETILLTVQVH 154 (160)
Q Consensus 92 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~~ 154 (160)
++||++.++.+|+++ .+|+.++..+++ +.|++++|+|.||.++ ...+..+++++++++.|+.
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~ 154 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAV 154 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcc
Confidence 999999999999986 559999999997 8999999999999742 2468889999999999853
No 96
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.94 E-value=1e-25 Score=156.27 Aligned_cols=142 Identities=27% Similarity=0.400 Sum_probs=113.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (160)
||+++|.+|+|||||++++..+.+...+.++.. +.....+.+++..+.+.+||++|+..+..++..++.++|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888766655553 3445567777877899999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhh-hc--ceEEEEee
Q 031411 97 VTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILL-TV--QVHLVILK 159 (160)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~-~~--~~~~~~~k 159 (160)
++++.+++.+..|+..+..... .++|+++++||+|+.+....+..++..+.+. .. .+..+++|
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 146 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAK 146 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCC
Confidence 9999999999999998877654 5799999999999975445555555554443 22 33445553
No 97
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.94 E-value=1.3e-25 Score=150.08 Aligned_cols=138 Identities=33% Similarity=0.580 Sum_probs=116.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (160)
||+++|++++|||||++++++..+...+.++.. +........++..+.+.+||+||+..+..++...+.++|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998877766666665 4555666777777899999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 97 VTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
.+++++++.+..|...+..... ...|+++++||+|+.+ ......+++++++..+++.++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~ 139 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN-ERQVSKEEGKALAKEWGCPFI 139 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc-cceecHHHHHHHHHHcCCcEE
Confidence 9999999999999999877655 5789999999999973 456677888888887764433
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.94 E-value=1.1e-25 Score=152.36 Aligned_cols=126 Identities=25% Similarity=0.500 Sum_probs=100.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.+||+++|++++|||||++++..+.+.. +.++.+.+.. .+.. ..+.+.+||++|++++..++..++.++|++++|
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4899999999999999999998777643 4566665443 3333 347899999999999998999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCccCCChhHHHHHh
Q 031411 95 YDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKREAPFCLHETIL 148 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~ 148 (160)
||++++.+++.+.+|+..+... ...+.|+++++||+|+.+ .+..+++++++
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~ 135 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD---AMKPHEIQEKL 135 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc---CCCHHHHHHHc
Confidence 9999999999998888777543 234789999999999963 24556666654
No 99
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.94 E-value=5.8e-25 Score=147.56 Aligned_cols=140 Identities=34% Similarity=0.516 Sum_probs=115.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++|+|||||++++....+...+.++... ........++..+.+.+||+||+..+..++..+++.+++++++|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 48999999999999999999998887666665543 33455677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
|..++.+++.+..|+..+.... ..++|+++++||+|+.+ ......++..+++.++++.++.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED-KRQVSSEEAANLARQWGVPYVE 141 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEE
Confidence 9999999999999999987763 35799999999999963 3345666677777777655543
No 100
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.94 E-value=9.2e-25 Score=153.23 Aligned_cols=143 Identities=30% Similarity=0.557 Sum_probs=118.8
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCc
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (160)
......+|++++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++++..++..++.+++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 34445689999999999999999999988888888888888887777777888899999999999999888888999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
++++|||.++..++..+..|+..+..... ++|+++++||+|+.+. ... .+..+++...++.++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~i~lv~nK~Dl~~~--~~~-~~~~~~~~~~~~~~~ 146 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVGNKVDVKDR--QVK-ARQITFHRKKNLQYY 146 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccCccc--cCC-HHHHHHHHHcCCEEE
Confidence 99999999999999999999999977654 7999999999998532 222 233456666665443
No 101
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.94 E-value=5.5e-25 Score=151.29 Aligned_cols=137 Identities=31% Similarity=0.558 Sum_probs=112.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
+.|++++|++|+|||||++++..+.+.+.+.++.... ....+..++..+.+.+||++|++.+.......+.++|+++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFEN-YVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccce-EEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 3699999999999999999999888776666655433 334566677778899999999988887777788999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC---------ccCCChhHHHHHhhhcce
Q 031411 95 YDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES---------KREAPFCLHETILLTVQV 153 (160)
Q Consensus 95 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~---------~~~~~~~~~~~~~~~~~~ 153 (160)
|+++++++|+.+. .|+..+.+..+ +.|+++++||+|+.+. ...+..+++++++++.++
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGA 147 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCC
Confidence 9999999999996 59998877665 6999999999998532 234566788899988874
No 102
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=1.3e-27 Score=150.66 Aligned_cols=138 Identities=45% Similarity=0.842 Sum_probs=127.2
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEEC
Q 031411 19 LLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 97 (160)
Q Consensus 19 ~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (160)
+++|++++|||+|+-++..+.|. ....++.++++..+.+..++.++.+++|||.||+++.....++++++|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 47899999999999888877665 45678899999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 98 TDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
.+..||++.+.|+.++..+..+.+.+++++||+|+. .++.+..++.+++++.+++++..
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a-~er~v~~ddg~kla~~y~ipfme 139 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA-HERAVKRDDGEKLAEAYGIPFME 139 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc-hhhccccchHHHHHHHHCCCcee
Confidence 999999999999999999988899999999999997 77889999999999999987653
No 103
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.94 E-value=1.2e-24 Score=147.05 Aligned_cols=139 Identities=33% Similarity=0.631 Sum_probs=112.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++|+|||||+++|.++.+...+.++.. +........++..+.+.+||+||+..+.......++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999888666555554 334455667788889999999999988888888889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcc----------CCChhHHHHHhhhcce-EEE
Q 031411 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESKR----------EAPFCLHETILLTVQV-HLV 156 (160)
Q Consensus 96 d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~----------~~~~~~~~~~~~~~~~-~~~ 156 (160)
|++++.++.... .|+..+..... +.|+++++||+|+.+... .+..+++.+++..+++ .++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 151 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYM 151 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEE
Confidence 999999988765 47777776655 899999999999864442 3457788888888876 443
No 104
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=5e-25 Score=148.69 Aligned_cols=118 Identities=31% Similarity=0.481 Sum_probs=95.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++++|||||++++.++.+...+..+.. ........++..+++.+||++|+..+...+...+.++|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP--EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc--ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999999888655433222 22334455667789999999999888777777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 031411 96 DVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK 136 (160)
Q Consensus 96 d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~ 136 (160)
|++++.+++.+. .|+..+..... +.|+++++||+|+.+..
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGS 119 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccc
Confidence 999999999985 58887876655 79999999999997443
No 105
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.94 E-value=3.2e-25 Score=150.95 Aligned_cols=115 Identities=23% Similarity=0.533 Sum_probs=96.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.+||+++|++++|||||++++..+.+. .+.++.+.+.. .+... .+.+.+||++|++.+..++..+++++|++++|
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999999877764 35566665443 33343 37899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCC
Q 031411 95 YDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDE 134 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~ 134 (160)
||++++++++...+|+..+.+. ...+.|++|++||+|+.+
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 9999999999999988887543 224789999999999964
No 106
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.94 E-value=4.9e-25 Score=151.03 Aligned_cols=118 Identities=25% Similarity=0.507 Sum_probs=98.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEE-CCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
.+||+++|++|||||||++++..+.+... .++.+.+.....+.. ++..+.+.+||++|++++..++..+++++|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 47999999999999999999998877644 455555554444444 3456899999999999999899999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCC
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMD 133 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~ 133 (160)
|||++++.+++.+..|+..+.... ..+.|+++++||+|+.
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 999999999999998988886643 3478999999999986
No 107
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.93 E-value=1.4e-25 Score=150.43 Aligned_cols=114 Identities=24% Similarity=0.554 Sum_probs=94.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|.++||||||++++..+.+. .+.++.+... ..+... .+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999887776 3566666443 233343 478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCC
Q 031411 96 DVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDE 134 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~ 134 (160)
|++++.+++.+.+|+..+... ...+.|+++++||+|+.+
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 999999999999988877543 224689999999999963
No 108
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.93 E-value=3.8e-25 Score=152.40 Aligned_cols=143 Identities=34% Similarity=0.519 Sum_probs=129.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
..+|++++|.+|+|||+|..++..+.|...+.++.+ +.+.+.+..++..+.+.++||+|++.+..+...++...|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 357999999999999999999999999999999998 6677888899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEEe
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVIL 158 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (160)
||+++++.||+.+..++..+.+... ..+|+++||||+|+. ..+++..+++++++...+|.|+..
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~-~~R~V~~eeg~~la~~~~~~f~E~ 145 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLE-RERQVSEEEGKALARSWGCAFIET 145 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccch-hccccCHHHHHHHHHhcCCcEEEe
Confidence 9999999999999999999955443 567999999999998 559999999999999999886543
No 109
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.93 E-value=5.7e-25 Score=148.89 Aligned_cols=125 Identities=21% Similarity=0.443 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (160)
||+++|+++||||||++++.+..+.. +.+|.+.... .+..+ .+.+.+||+||+.++...+..+++++|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999886653 5666654443 33444 3789999999999999899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhh
Q 031411 97 VTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILL 149 (160)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~ 149 (160)
.+++.+++.+..|+..+.+.. ..+.|+++++||+|+.+ .+..+++++++.
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~ 126 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG---ALSVEEMTELLS 126 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc---CCCHHHHHHHhC
Confidence 999999999999998886542 34689999999999962 356666766654
No 110
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.93 E-value=5.7e-25 Score=150.49 Aligned_cols=116 Identities=23% Similarity=0.524 Sum_probs=96.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
..+||+++|+++||||||++++..+.+. .+.++.+.+.. .+..+ .+.+.+||++|++++..+|..+++++|++|+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4489999999999999999999987775 35666665432 34444 3789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCC
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDE 134 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~ 134 (160)
|||++++++++.+..|+..+... ...+.|++|++||+|+++
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 99999999999988888777542 224789999999999973
No 111
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.93 E-value=1.2e-24 Score=148.44 Aligned_cols=138 Identities=30% Similarity=0.504 Sum_probs=113.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
.||+++|++|+|||||++++.+..+...+.++....+ ......++..+.+.+||+||+.++...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999887766666554333 455667777788999999999999988999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEE
Q 031411 96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHL 155 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (160)
|.++..+++.+..|+..+.+.. ..+.|+++++||+|+. ..+....++...++...++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~ 140 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH-TQRQVSTEEGKELAESWGAAF 140 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh-hcCccCHHHHHHHHHHcCCeE
Confidence 9999999999999988887653 3578999999999996 344555666777777766443
No 112
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.93 E-value=8.3e-25 Score=148.55 Aligned_cols=130 Identities=22% Similarity=0.420 Sum_probs=101.8
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcE
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (160)
..+..++|+++|++++|||||++++.+..+ ..+.++.+. ....+..++ +.+.+||+||++.+..++..+++++|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 344568999999999999999999998754 344555553 334455554 689999999999888888999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCccCCChhHHHHHh
Q 031411 91 ILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKREAPFCLHETIL 148 (160)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~ 148 (160)
+++|||.+++.+++....|+..+... ...+.|+++++||+|+.+.. ..++++++.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~~~~~~ 140 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL---SEEEIREAL 140 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC---CHHHHHHHh
Confidence 99999999999999998888887543 23578999999999997432 445555554
No 113
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.93 E-value=3.8e-25 Score=149.52 Aligned_cols=115 Identities=25% Similarity=0.465 Sum_probs=96.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (160)
+|+++|+++||||||++++.+. +...+.++.+.. ...+..++ +.+.+||+||+.++..++..+++++|++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 566666776643 33445544 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCc
Q 031411 97 VTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESK 136 (160)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~ 136 (160)
++++.+++.+..|+..+.+... .+.|+++++||+|+++..
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 9999999999999998876532 478999999999997443
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.93 E-value=4.4e-25 Score=148.01 Aligned_cols=115 Identities=20% Similarity=0.460 Sum_probs=93.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+|+++|+++||||||++++.+..+ ...+.++.+... ..+... .+.+.+||+||+.++..++..+++++|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEKG--NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEEC--CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 445566666433 223333 478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCC
Q 031411 96 DVTDESSFNNIRNWIRNIEQHA---SDNVNKILVGNKADMDES 135 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~---~~~~pi~vv~~K~Dl~~~ 135 (160)
|++++.+++.+..|+..+.+.. ..++|+++++||+|+.+.
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 9999999999888888876532 247999999999999643
No 115
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.93 E-value=1.1e-24 Score=149.28 Aligned_cols=115 Identities=25% Similarity=0.553 Sum_probs=94.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.+||+++|++++|||||++++..+.+.. +.++.+.++ ..+... .+.+.+||++|++++..++..+++++|++|+|
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV--ETVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999998877754 456666443 234443 37899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCC
Q 031411 95 YDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDE 134 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~ 134 (160)
||++++++++...+++..+... ...+.|+++++||.|+.+
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 9999999999998888777432 224689999999999963
No 116
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.92 E-value=9.1e-24 Score=143.78 Aligned_cols=119 Identities=32% Similarity=0.626 Sum_probs=100.6
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
.+..+||+++|+++|||||+++++..+... ...||.+ +....+..++ +.+.+||++|+..+...|..++.++|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccc--cccceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 367799999999999999999999986544 3566666 4555677777 6789999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCC
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDES 135 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~ 135 (160)
|+|+|+++.+.+++..+.+..+.... ..+.|+++++||+|+++.
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc
Confidence 99999999999999988888876542 257899999999999743
No 117
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.92 E-value=9.8e-24 Score=142.24 Aligned_cols=125 Identities=23% Similarity=0.464 Sum_probs=95.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC------CCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (160)
+|+++|++|+|||||++++.+... ...+.++.+.+. ..+..++ ..+.+||+||++.+..++..++.++|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976322 223344444333 3445554 689999999999999989999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHh
Q 031411 91 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETIL 148 (160)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~ 148 (160)
+++|+|++++++++....|+..+.+.. ..+.|+++++||+|+.+. ...++..++.
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~---~~~~~~~~~~ 132 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA---LSVEEIKEVF 132 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC---CCHHHHHHHh
Confidence 999999999989999988888876542 357899999999998632 3344454444
No 118
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.92 E-value=7.1e-24 Score=137.78 Aligned_cols=140 Identities=21% Similarity=0.412 Sum_probs=110.6
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
.++.++|+++|..|+||||++++|.+.. .....|+.+ +..+.+.+++ +++++||.+||......|..+|+++|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4558999999999999999999999876 344556655 6667777776 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChh---HHHHHhhhcceEEE
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFC---LHETILLTVQVHLV 156 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~---~~~~~~~~~~~~~~ 156 (160)
|+|+|.+++..++.-...++.+.... -.+.|++|++||.|++..-...... +..++++++++..+
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~ 156 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLV 156 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEE
Confidence 99999999999988887777774422 2467999999999997444333333 34556566666544
No 119
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.92 E-value=9.1e-24 Score=135.05 Aligned_cols=114 Identities=39% Similarity=0.713 Sum_probs=87.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFT--TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
||+|+|++|+|||||+++|.+..+. .......+................+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988765 11222222334444556666666799999999998888888889999999999
Q ss_pred EECCChhhHHHHHH---HHHHHHHhcCCCCcEEEEEeCCC
Q 031411 95 YDVTDESSFNNIRN---WIRNIEQHASDNVNKILVGNKAD 131 (160)
Q Consensus 95 ~d~~~~~~~~~~~~---~~~~~~~~~~~~~pi~vv~~K~D 131 (160)
||.+++.+++.+.+ |+..+..... ++|+++++||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence 99999999988754 5666655444 699999999998
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.92 E-value=5.2e-24 Score=142.64 Aligned_cols=114 Identities=30% Similarity=0.602 Sum_probs=93.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (160)
+|+++|++|+|||||++++.++.+... .++.+... ..+... ..+.+.+||++|+..+...+..++.++|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999877543 45555433 333333 34789999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCC
Q 031411 97 VTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDE 134 (160)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~ 134 (160)
++++.+++.+..|+..+.+.. ..+.|+++++||+|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 999999999988888876543 24789999999999963
No 121
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=2.4e-23 Score=142.79 Aligned_cols=126 Identities=20% Similarity=0.293 Sum_probs=97.8
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...++|+++|++|+|||||++++.++.+.. +.++.+ .....+..++ +++.+||+||+..+...+..++.++|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQH--PTSEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccc--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 345899999999999999999999876542 333433 2233444444 68899999999998889999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCccCCChhHHHH
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKREAPFCLHET 146 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~ 146 (160)
+|+|++++++++....++..+.+. ...+.|+++++||+|++. .+..+++++
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~---~~~~~~i~~ 141 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY---AASEDELRY 141 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC---CCCHHHHHH
Confidence 999999999999988888877543 224789999999999963 334444443
No 122
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.91 E-value=4.9e-26 Score=150.09 Aligned_cols=147 Identities=33% Similarity=0.607 Sum_probs=133.3
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
..+.+..+|++++|..++||||+|+++..+-|...+..+.+.++....+.++++.+.+.+||++|++.++.+..++++++
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga 93 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA 93 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence 45677889999999999999999999999999989999999888877777777778888999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
.+.++||+.+|+.||+...+|++.+..... .+|.+++.||+|+. ...+...++++.+++..++.++.
T Consensus 94 qa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlv-eds~~~~~evE~lak~l~~RlyR 160 (246)
T KOG4252|consen 94 QASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLV-EDSQMDKGEVEGLAKKLHKRLYR 160 (246)
T ss_pred cceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhh-HhhhcchHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999988777 89999999999998 66778888899999988876654
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.91 E-value=1.2e-23 Score=140.62 Aligned_cols=113 Identities=26% Similarity=0.576 Sum_probs=93.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (160)
||+++|.+|||||||++++.++.. ....++.+... ..+..++ ..+.+||+||+..+...+..++.++|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998874 34455555333 3444444 689999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCC
Q 031411 97 VTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDE 134 (160)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~ 134 (160)
++++++++....|+..+.... ..+.|+++++||+|+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 999999999999888876643 35889999999999964
No 124
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.91 E-value=1.2e-23 Score=142.97 Aligned_cols=115 Identities=25% Similarity=0.452 Sum_probs=94.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.++|+++|++++|||||++++..+.+.. +.++.+... ..+..++ +++.+||+||+..+...+..+++++|++++|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 4799999999999999999999887764 455555433 3444444 7899999999999988899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCC
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDE 134 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~ 134 (160)
+|+++++++.....++..+.+.. ..+.|+++++||+|+.+
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 99999999988888887775533 24689999999999964
No 125
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.91 E-value=4.3e-23 Score=142.02 Aligned_cols=129 Identities=22% Similarity=0.359 Sum_probs=102.7
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
....+|+++|++|||||||++++.++.+. .+.++.+. ....+..++ ..+.+||+||+..+...+..+++++|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999987764 34444442 334555555 67899999999988888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhh
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILL 149 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~ 149 (160)
+|+|.++.++++....|+..+.+.. ..+.|+++++||+|+.. .+..++++++..
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~---~~~~~~~~~~~~ 146 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG---AVSEEELRQALG 146 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC---CcCHHHHHHHhC
Confidence 9999999999998888888886543 25689999999999962 455666766664
No 126
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.91 E-value=8.9e-23 Score=136.60 Aligned_cols=113 Identities=27% Similarity=0.506 Sum_probs=89.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (160)
||+++|++++|||||++++..+.+.. ..++.+.+. ..+... ...+.+||+||+..+..++..++.++|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998776653 345544333 233443 3689999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCC
Q 031411 97 VTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDE 134 (160)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~-~~~~~~pi~vv~~K~Dl~~ 134 (160)
++++.++....+++..+.+ ....+.|+++++||+|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPG 114 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCC
Confidence 9998888877776665543 2224789999999999963
No 127
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.6e-23 Score=138.05 Aligned_cols=131 Identities=23% Similarity=0.499 Sum_probs=111.3
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
....+|+++|..++||||+++++..++.... .||.+ ++...+.+.+ ++|.+||.+|+.++...|..++.+.+++|
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEcc--eEEEEEecCCCcccccchhhhccCCcEEE
Confidence 4568999999999999999999998887655 67776 5566777766 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHh
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETIL 148 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~ 148 (160)
+|+|.+|++.+.+.++.+..+..+.. .+.|+++.+||.|+++.....+..+...+.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~ 146 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLH 146 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhh
Confidence 99999999999999999988877665 688999999999998666655555444433
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.90 E-value=1.1e-22 Score=135.41 Aligned_cols=113 Identities=27% Similarity=0.580 Sum_probs=95.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEEC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 97 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (160)
|+++|++|+|||||++++.+..+...+.++.+.+.. .+...+ +.+.+||+||+..+...+..++.++|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 789999999999999999999888777777775543 344444 7899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCC
Q 031411 98 TDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDE 134 (160)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~ 134 (160)
+++.++.....|+..+... ...+.|+++++||+|+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPG 115 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 9999998888888877543 225789999999999864
No 129
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.89 E-value=1.1e-23 Score=134.74 Aligned_cols=142 Identities=23% Similarity=0.440 Sum_probs=113.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
.++.+.++|..++|||||.|.+..+.+.+...++.+ ++...++..+ +.+.+||.||++++..+|..+.++++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvG--fnmrk~tkgn--vtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhccccc--ceeEEeccCc--eEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 357899999999999999999999999888888888 4445554444 889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCccCCChhHHHHHh----hhcceEEEEee
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKREAPFCLHETIL----LTVQVHLVILK 159 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~k 159 (160)
|+|+++++.++..+..+..+... .-.++|.+|+|||.|++++.......+...+. ++..|..+|+|
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siSck 165 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCK 165 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEc
Confidence 99999999998888888877543 34689999999999998665544443333222 23445666654
No 130
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.89 E-value=5.5e-22 Score=139.29 Aligned_cols=121 Identities=45% Similarity=0.735 Sum_probs=106.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|+.|+|||||++++..+.+...+.++.+..+........+..+.+.+||++|++++..++..++.++++++++|
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 89999999999999999999999999888888776666666655555788999999999999999999999999999999
Q ss_pred ECCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 031411 96 DVTD-ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136 (160)
Q Consensus 96 d~~~-~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~ 136 (160)
|..+ ..+.+....|...+....+.+.|+++++||+|+....
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 9999 5666777889999988776678999999999997543
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.89 E-value=6e-22 Score=131.38 Aligned_cols=119 Identities=39% Similarity=0.589 Sum_probs=100.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|.+|+|||||++.+..+.+...+.++.+.+.....+..++..+.+.+||+||+..+..++...+..++.++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 79999999999999999999998877777778887777766777777788999999999999888888899999999999
Q ss_pred ECCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 96 DVTDE-SSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 96 d~~~~-~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
|.... .++.... .|...+......+.|+++++||+|+..
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRD 122 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCc
Confidence 99876 6666555 677777665544889999999999963
No 132
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.1e-22 Score=127.13 Aligned_cols=130 Identities=23% Similarity=0.505 Sum_probs=107.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.++|+++|..++||||++.+|.-+.. ....+|.+ ++...+++.+ +.|++||.+|+++.+..|..++.+..++|||
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCC-cccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 58999999999999999999987663 34466666 6667778877 7899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhh
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILL 149 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~ 149 (160)
+|+++.+.+++.+..+..+.++.. .+.|++|++||.|+++...+.+..+..++-+
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~ 147 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELER 147 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccc
Confidence 999999999999988888866543 6899999999999986555444444433333
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.88 E-value=2.8e-21 Score=130.96 Aligned_cols=119 Identities=22% Similarity=0.428 Sum_probs=94.6
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcE
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (160)
..+..++|+++|++|+|||||++++.+..+. ...++.+. ....+..++ ..+.+||++|+..+...+..+++.+|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~--~~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGF--NIKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 3445799999999999999999999987653 23444443 334455555 678999999998888888888999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCC
Q 031411 91 ILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDE 134 (160)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~ 134 (160)
+++|+|+++..+++....|+..+... ...++|+++++||+|+.+
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 99999999988898888877776543 235789999999999863
No 134
>PTZ00099 rab6; Provisional
Probab=99.88 E-value=4.7e-21 Score=130.44 Aligned_cols=121 Identities=36% Similarity=0.630 Sum_probs=104.6
Q ss_pred CCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhc
Q 031411 38 GSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA 117 (160)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 117 (160)
+.|.+.+.+|.+.++....+..++..+.+.+|||+|++++..++..+++++|++++|||.+++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45667788899888888888889989999999999999999999999999999999999999999999999999997765
Q ss_pred CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEE--EEee
Q 031411 118 SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHL--VILK 159 (160)
Q Consensus 118 ~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~k 159 (160)
..++|+++++||+|+. ....+..+++.+++..+++.+ +|||
T Consensus 83 ~~~~piilVgNK~DL~-~~~~v~~~e~~~~~~~~~~~~~e~SAk 125 (176)
T PTZ00099 83 GKDVIIALVGNKTDLG-DLRKVTYEEGMQKAQEYNTMFHETSAK 125 (176)
T ss_pred CCCCeEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEECC
Confidence 5578999999999997 345578888999998887655 4554
No 135
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.88 E-value=1.7e-21 Score=131.53 Aligned_cols=140 Identities=17% Similarity=0.179 Sum_probs=92.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcc----cccccchhh---ccCCc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----RFRTITTAY---YRGAM 89 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~---~~~~~ 89 (160)
+|+++|.+|+|||||+++|.+........+..+.+.....+..++. ..+.+|||||.. ....+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999976542221122222232233334442 478999999963 222233333 44699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCccCCChhHHHHHhhh---cceEEEEee
Q 031411 90 GILLVYDVTDE-SSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKREAPFCLHETILLT---VQVHLVILK 159 (160)
Q Consensus 90 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~k 159 (160)
++++|+|++++ ++++.+..|++.+..... .+.|+++++||+|+.+... ..+..+.+..+ ..+..+++|
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~ 154 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE--LFELLKELLKELWGKPVFPISAL 154 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh--hHHHHHHHHhhCCCCCEEEEecC
Confidence 99999999998 789999999998876543 3689999999999963322 23334444444 234556654
No 136
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.87 E-value=2.4e-21 Score=132.03 Aligned_cols=114 Identities=25% Similarity=0.350 Sum_probs=83.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CCCcccc------ceeeeEEEE--EEEE---CCEEEEEEEecCCCccccc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS-------FTTSFIT------TIGIDFKIR--TIEL---DGKRIKLQIWDTAGQERFR 78 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~-------~~~~~~~------~~~~~~~~~--~~~~---~~~~~~~~~~D~~g~~~~~ 78 (160)
+|+++|..++|||||+++|.+.. +...+.+ +.+..+... .+.+ ++..+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998632 1111111 111222222 2222 5567889999999999998
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
..+..++.++|++++|||+++..+++....|.... ..++|+++++||+|+.+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPS 133 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCc
Confidence 88888999999999999999876666665554332 23789999999999963
No 137
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.87 E-value=1.7e-21 Score=134.68 Aligned_cols=129 Identities=20% Similarity=0.247 Sum_probs=89.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc--CCCCCcc------------ccceeeeEEEEEEEECCEEEEEEEecCCCcccccccc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD--GSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 81 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 81 (160)
.+|+++|.+++|||||+++|.. +.+.... ..+.+.+............+.+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 4443321 1122333333333333345789999999999998889
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHh
Q 031411 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETIL 148 (160)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~ 148 (160)
..+++++|++++|||+++.. +.....++..+.. .++|+++++||+|+.+.......+++.++.
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~ 145 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLF 145 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998732 2333334443332 378999999999996433333345555554
No 138
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.87 E-value=6.1e-21 Score=128.69 Aligned_cols=137 Identities=18% Similarity=0.157 Sum_probs=87.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccc---------cchhhccC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---------ITTAYYRG 87 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~~~ 87 (160)
+|+++|.+|+|||||++++.+..+.....+..+.+......... .+.+.+|||||+..... ........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 79999999999999999999987643322222222222233333 36899999999742110 00011123
Q ss_pred CcEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhc--ceEEEEee
Q 031411 88 AMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTV--QVHLVILK 159 (160)
Q Consensus 88 ~~~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~k 159 (160)
.|++++|+|++++.+ ++....|+..+..... +.|+++++||+|+.+... ..+.+++.... .+..+|||
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~-~~pvilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~Sa~ 151 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK-NKPVIVVLNKIDLLTFED---LSEIEEEEELEGEEVLKISTL 151 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcC-cCCeEEEEEccccCchhh---HHHHHHhhhhccCceEEEEec
Confidence 689999999998754 4666778888766543 789999999999963322 22244444433 35556665
No 139
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.87 E-value=4.2e-21 Score=133.58 Aligned_cols=120 Identities=22% Similarity=0.210 Sum_probs=86.8
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccc---------cccchh
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITTA 83 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~ 83 (160)
+..++|+++|++|||||||++++.+...........+.+.....+...+. ..+.+||+||.... ... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence 45689999999999999999999987644332223333344444444442 37899999997321 111 11
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.+.++|++++|+|++++.+++....|...+......+.|+++++||+|+.+
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 356899999999999988888877777777665555789999999999963
No 140
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=3.3e-21 Score=134.05 Aligned_cols=118 Identities=19% Similarity=0.396 Sum_probs=89.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC-cEEEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA-MGILLVY 95 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~-~~~i~v~ 95 (160)
+|+++|++++|||+|+++|..+.+.....++.. ..........+....+.+||+||+.++...+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~-~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEP-NVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEee-cceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 689999999999999999999877665444321 22211121113346799999999999988888889998 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCC
Q 031411 96 DVTDE-SSFNNIRNWIRNIEQH---ASDNVNKILVGNKADMDES 135 (160)
Q Consensus 96 d~~~~-~~~~~~~~~~~~~~~~---~~~~~pi~vv~~K~Dl~~~ 135 (160)
|+.+. .++..+.+|+..+... ...++|+++++||+|+...
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 99987 6777777777665432 2257999999999998643
No 141
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.86 E-value=5.2e-21 Score=128.29 Aligned_cols=136 Identities=19% Similarity=0.161 Sum_probs=86.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC---CCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG---SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
.|+++|++++|||||+++|.+. .+..+..++.+.+.....+...+ ...+.+|||||++++.......+.++|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 6899999999999999999863 23323233334344334445542 2579999999998887666667889999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-CCChhHHHHHhhh-----cceEEEEee
Q 031411 94 VYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-EAPFCLHETILLT-----VQVHLVILK 159 (160)
Q Consensus 94 v~d~~~---~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~-~~~~~~~~~~~~~-----~~~~~~~~k 159 (160)
|+|+++ +.+.+.+ ..+... . ..|+++++||+|+.+... ....++..++.+. ..+.++|+|
T Consensus 81 V~d~~~~~~~~~~~~~----~~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (164)
T cd04171 81 VVAADEGIMPQTREHL----EILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAV 149 (164)
T ss_pred EEECCCCccHhHHHHH----HHHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCC
Confidence 999986 3333322 222211 1 248999999999964321 1223344444433 345555554
No 142
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=8e-21 Score=140.61 Aligned_cols=142 Identities=17% Similarity=0.138 Sum_probs=98.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccc----cccc---hhhccCC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTIT---TAYYRGA 88 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~~---~~~~~~~ 88 (160)
..|.|+|.++||||||+++|++........+.++..+....+.+.+ ..++.+||+||...- ..+. ...++++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 5689999999999999999998654433334445555555555532 246899999996321 1222 3345689
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhc--ceEEEEee
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKREAPFCLHETILLTV--QVHLVILK 159 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~k 159 (160)
+++++|+|+++.++++.+..|..++..+.+ .+.|+++++||+|+.+. .....++.+.++... .+.++||+
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~-~~~~~~~~~~~~~~~~~~i~~iSAk 311 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE-EEEREKRAALELAALGGPVFLISAV 311 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc-hhHHHHHHHHHHHhcCCCEEEEEcC
Confidence 999999999988889999999999977654 46899999999999633 222333344444443 45566664
No 143
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.85 E-value=7.2e-21 Score=122.95 Aligned_cols=147 Identities=23% Similarity=0.490 Sum_probs=126.6
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCc
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (160)
....-.+||.++|++..|||||+-++..+.+++++..+.+.++..+.+...+..+.|.+||++|++++..+.+....++-
T Consensus 15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv 94 (205)
T KOG1673|consen 15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV 94 (205)
T ss_pred cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence 34456699999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC----CCCccCCChhHHHHHhhhcceEEEE
Q 031411 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM----DESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl----~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+++++||.+.+.++..+.+|+++........+|++ +|+|-|+ +++.......+++++++-.++..++
T Consensus 95 aIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPil-vGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F 165 (205)
T KOG1673|consen 95 AILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPIL-VGTKYDLFIDLPPELQETISRQARKYAKVMNASLFF 165 (205)
T ss_pred EEEEEEecCchHHHHHHHHHHHHHhccCCccceEE-eccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 99999999999999999999999988777677765 6899995 4333444556688888888765444
No 144
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.85 E-value=3.8e-20 Score=137.97 Aligned_cols=119 Identities=24% Similarity=0.265 Sum_probs=88.9
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccc---------ccccchh
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTA 83 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~ 83 (160)
+..++|+++|.+|+|||||+|+|.+........+..+.++....+...+. ..+.+|||+|..+ +... ..
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t-le 264 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT-LE 264 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH-HH
Confidence 34589999999999999999999987654433344455666667777432 4789999999621 2111 12
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
.+.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+.
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 46789999999999998888877767666655544578999999999996
No 145
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.85 E-value=2.3e-20 Score=125.72 Aligned_cols=114 Identities=20% Similarity=0.157 Sum_probs=81.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEEC-CEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
.|+++|.+++|||||+++|..+.+.....++.+.+.....+..+ +....+.+|||||+..+..++...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999887765433334433333344433 13468999999999888888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 96 DVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
|+++....+.. ..+..+.. .+.|+++++||+|+.+
T Consensus 82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPN 116 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceeccc
Confidence 99874321111 11222222 3689999999999863
No 146
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.84 E-value=9.9e-20 Score=119.54 Aligned_cols=115 Identities=57% Similarity=0.979 Sum_probs=92.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECC
Q 031411 20 LIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 98 (160)
Q Consensus 20 v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (160)
++|++|+|||||++++.+... .....++. .+..............+.+||+||+..+...+...+..+|++++|+|.+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 44444444 5666666666666789999999998888877788899999999999999
Q ss_pred ChhhHHHHHHHHH-HHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 99 DESSFNNIRNWIR-NIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 99 ~~~~~~~~~~~~~-~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
++.+++....|.. ........+.|+++++||+|+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 9999988888732 233334458999999999998633
No 147
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.84 E-value=1.6e-19 Score=138.23 Aligned_cols=115 Identities=27% Similarity=0.298 Sum_probs=87.0
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccc--------hh
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TA 83 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~ 83 (160)
...++|+++|++|+|||||+|+|.+... .....++.+.+.....+..++ ..+.+|||||.......+ ..
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 4458999999999999999999998653 223334555666666777777 567899999986544322 35
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
+++++|++++|||++++.+++.. |+..+.. .+.|+++++||+|+.+
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKI 324 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCC
Confidence 67899999999999988877665 6655532 3679999999999963
No 148
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.84 E-value=1.9e-20 Score=123.10 Aligned_cols=119 Identities=20% Similarity=0.209 Sum_probs=81.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcc-----cccccchhhccCCcEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRTITTAYYRGAMGI 91 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~~~~ 91 (160)
||+++|++|+|||||++++.+..+. +.++.+. .+.. .+||+||+. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYND-----GAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999987642 2222222 2222 589999973 2333322 47899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcce---EEEEee
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQV---HLVILK 159 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~k 159 (160)
++|||++++.++.. ..|...+ ..|+++++||+|+.+ .....+++++++.+++. ..+|||
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~ 128 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE--ADVDIERAKELLETAGAEPIFEISSV 128 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC--cccCHHHHHHHHHHcCCCcEEEEecC
Confidence 99999999888754 2343322 239999999999963 23456667777777654 344554
No 149
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.84 E-value=3e-19 Score=115.20 Aligned_cols=137 Identities=26% Similarity=0.422 Sum_probs=109.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEEE-CCEEEEEEEecCCCcccc-cccchhhccCCcE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT--TSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERF-RTITTAYYRGAMG 90 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~-~~~~~~~~~~~~~ 90 (160)
..|++++|..++|||++++.+.-++.. .+..+|.. +.+...+.. .+.+..+.++||.|-+.+ ..+...++.-+|+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 479999999999999999999854433 33445544 444455444 355678999999998777 5667888999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcce
Q 031411 91 ILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILLTVQV 153 (160)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (160)
+++||+..+++||+.+.-....+.++.. +.+||+|++||+|+. ...++..+-++.||+.-.+
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~-~p~~vd~d~A~~Wa~rEkv 150 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA-EPREVDMDVAQIWAKREKV 150 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc-cchhcCHHHHHHHHhhhhe
Confidence 9999999999999998887777877653 568999999999997 6678888899999987554
No 150
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.83 E-value=1.9e-19 Score=120.10 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=88.1
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccccccc------chhhc--cCCcEE
Q 031411 20 LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY--RGAMGI 91 (160)
Q Consensus 20 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~ 91 (160)
++|.+|+|||||++++.+..+.....++.+.+.....+..++ ..+.+|||||+..+... +..++ .++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765544445555555556666666 47899999998766542 44555 489999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcc--eEEEEe
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQ--VHLVIL 158 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (160)
++++|+.+++.. ..|+..+.. .+.|+++++||+|+.+... .. .+.++++...+ +..+++
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~-~~-~~~~~~~~~~~~~~~~iSa 139 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRG-IK-IDLDKLSELLGVPVVPTSA 139 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhccccc-ch-hhHHHHHHhhCCCeEEEEc
Confidence 999999876443 234444433 3689999999999964322 22 22445665555 444444
No 151
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.83 E-value=1.8e-19 Score=133.32 Aligned_cols=141 Identities=14% Similarity=0.103 Sum_probs=96.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccc----cccchh---hccCC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTITTA---YYRGA 88 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~~~~---~~~~~ 88 (160)
..|+++|.+++|||||+++|.+........+.++.......+.+++ ..++.+||+||.... ..+... .++++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 6789999999999999999998654332223333444545555544 257899999996421 122223 35579
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcc--eEEEEee
Q 031411 89 MGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKREAPFCLHETILLTVQ--VHLVILK 159 (160)
Q Consensus 89 ~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~k 159 (160)
+++++|+|+++. ++++.+..|..++..+.. .+.|+++++||+|+.+.. ...+..++++.+.+ +..+||+
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~--~~~~~~~~l~~~~~~~vi~iSAk 312 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE--ELAELLKELKKALGKPVFPISAL 312 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH--HHHHHHHHHHHHcCCcEEEEEcc
Confidence 999999999976 678888888888876543 468999999999996432 12334455555544 4556654
No 152
>PRK04213 GTP-binding protein; Provisional
Probab=99.83 E-value=2e-20 Score=129.86 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=79.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCC-----------cccccccch
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTITT 82 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~ 82 (160)
..++|+++|.+|+|||||++++.+..+.....++.+.. ...+... .+.+||||| ++++...+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 45799999999999999999999887665555544433 2233332 589999999 445555444
Q ss_pred hhcc----CCcEEEEEEECCChhhH-HH---------HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHh
Q 031411 83 AYYR----GAMGILLVYDVTDESSF-NN---------IRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETIL 148 (160)
Q Consensus 83 ~~~~----~~~~~i~v~d~~~~~~~-~~---------~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~ 148 (160)
.++. .++++++|+|..+...+ +. -.+.+..+. ..++|+++++||+|+.+.. .+..++++
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~----~~~~~~~~ 154 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR----DEVLDEIA 154 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH----HHHHHHHH
Confidence 4443 46788889888643221 00 011111111 2478999999999996332 23445555
Q ss_pred hhcc
Q 031411 149 LTVQ 152 (160)
Q Consensus 149 ~~~~ 152 (160)
...+
T Consensus 155 ~~~~ 158 (201)
T PRK04213 155 ERLG 158 (201)
T ss_pred HHhc
Confidence 4444
No 153
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.82 E-value=2.1e-19 Score=121.83 Aligned_cols=112 Identities=24% Similarity=0.284 Sum_probs=79.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEEC-CEEEEEEEecCCCccc----ccccc---hhhccCCcEE
Q 031411 20 LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQER----FRTIT---TAYYRGAMGI 91 (160)
Q Consensus 20 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~----~~~~~---~~~~~~~~~~ 91 (160)
++|++|+|||||+++|.+........+..+.+.....+..+ + ..+.+||+||... .+.++ ...+.++|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 58999999999999999876422222222233333444455 4 5789999999632 22222 2346789999
Q ss_pred EEEEECCCh------hhHHHHHHHHHHHHHhcC-------CCCcEEEEEeCCCCC
Q 031411 92 LLVYDVTDE------SSFNNIRNWIRNIEQHAS-------DNVNKILVGNKADMD 133 (160)
Q Consensus 92 i~v~d~~~~------~~~~~~~~~~~~~~~~~~-------~~~pi~vv~~K~Dl~ 133 (160)
++|+|+.++ .+++.+..|...+..... .+.|+++++||+|+.
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 133 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLD 133 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcC
Confidence 999999987 578888888887765432 368999999999996
No 154
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.82 E-value=1.6e-19 Score=115.04 Aligned_cols=117 Identities=28% Similarity=0.525 Sum_probs=99.2
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
.+.+||+++|..++|||||+..|..-+ +....++.+ ++.+.+..++ .+++++||.+|+......|..++.+.|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCC-hhhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence 567999999999999999999998754 334455555 5667777766 479999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCC
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMD 133 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~ 133 (160)
+|+|.+|+..|+++.+.+-++.... -..+|+++.+||.|+.
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLL 132 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHH
Confidence 9999999999999988887776543 3578999999999985
No 155
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.81 E-value=3.5e-19 Score=121.64 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=87.7
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcc----------cccccc
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTIT 81 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~ 81 (160)
....++|+++|.+|+|||||++++.+..+.....++.+.......+..++ .+.+||+||.. .+..+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 35668999999999999999999998764333233332222222233333 68999999942 222223
Q ss_pred hhhcc---CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-ccCCChhHHHHHhhhc----ce
Q 031411 82 TAYYR---GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES-KREAPFCLHETILLTV----QV 153 (160)
Q Consensus 82 ~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~-~~~~~~~~~~~~~~~~----~~ 153 (160)
..+++ .++++++|+|++++-+.... .++..+.. .+.|+++++||+|+.+. ......+++++..... .+
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence 33444 46899999999875443333 22233322 36899999999998632 2233455566666654 46
Q ss_pred EEEEee
Q 031411 154 HLVILK 159 (160)
Q Consensus 154 ~~~~~k 159 (160)
..+||+
T Consensus 168 ~~~Sa~ 173 (179)
T TIGR03598 168 QLFSSL 173 (179)
T ss_pred EEEECC
Confidence 666664
No 156
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.81 E-value=1.1e-19 Score=120.28 Aligned_cols=131 Identities=19% Similarity=0.220 Sum_probs=87.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccccc------ccchhhc--cC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYY--RG 87 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~--~~ 87 (160)
++|+++|.||+|||||+|+|++........+..+.+.....+...+ ..+.++|+||..... .+...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999887666677777777777788877 578999999954332 2223333 58
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
.|++++|+|++..+. -.....++.. .++|++++.||+|...+.. .. .+..++++..++..+
T Consensus 79 ~D~ii~VvDa~~l~r---~l~l~~ql~e---~g~P~vvvlN~~D~a~~~g-~~-id~~~Ls~~Lg~pvi 139 (156)
T PF02421_consen 79 PDLIIVVVDATNLER---NLYLTLQLLE---LGIPVVVVLNKMDEAERKG-IE-IDAEKLSERLGVPVI 139 (156)
T ss_dssp SSEEEEEEEGGGHHH---HHHHHHHHHH---TTSSEEEEEETHHHHHHTT-EE-E-HHHHHHHHTS-EE
T ss_pred CCEEEEECCCCCHHH---HHHHHHHHHH---cCCCEEEEEeCHHHHHHcC-CE-ECHHHHHHHhCCCEE
Confidence 999999999976432 2222333332 3789999999999853222 22 235666666665443
No 157
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.81 E-value=1.7e-18 Score=115.09 Aligned_cols=112 Identities=25% Similarity=0.280 Sum_probs=79.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCccccccc--------chhhcc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYYR 86 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~ 86 (160)
++|+++|++|+|||||++++.+.... ....+..+.+.....+..++ ..+.+||+||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987542 12233333344444455554 57899999997654322 224567
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
.+|++++|+|++++.+......+.. ..+.|+++++||+|+.+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCc
Confidence 8999999999998777666543332 347899999999999643
No 158
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.80 E-value=6.8e-19 Score=138.97 Aligned_cols=116 Identities=23% Similarity=0.313 Sum_probs=85.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC-------CCCccc------cceeeeEEE--EEEEE---CCEEEEEEEecCCCccc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGS-------FTTSFI------TTIGIDFKI--RTIEL---DGKRIKLQIWDTAGQER 76 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~-------~~~~~~------~~~~~~~~~--~~~~~---~~~~~~~~~~D~~g~~~ 76 (160)
.-+|+++|+.++|||||+++|+... +...+. ...+++... ..+.+ ++..+.+.+|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998642 111111 111222322 22322 45668999999999999
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
+...+..++..+|++++|+|+++..+.+....|...+. .++|+++++||+|+.+
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPS 136 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCc
Confidence 98888899999999999999998766666666654432 3789999999999963
No 159
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.80 E-value=9.3e-19 Score=134.51 Aligned_cols=113 Identities=27% Similarity=0.256 Sum_probs=84.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeEEEEEEEECCEEEEEEEecCCCccccccc--------chhh
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAY 84 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 84 (160)
..++|+++|.+|+|||||+|+|.+... .....+..+.+.....+..++ ..+.+|||||...+... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 347999999999999999999998764 233344445556666667766 56899999998654432 1235
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
+..+|++++|+|++++.+++....|.. ..+.|+++|+||+|+.+
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTG 335 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccc
Confidence 788999999999998887775544433 34789999999999963
No 160
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.80 E-value=1.8e-18 Score=136.09 Aligned_cols=118 Identities=20% Similarity=0.195 Sum_probs=86.8
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
..+..+|+++|..++|||||+++|.+..+.....++.+.+.....+..++. ..+.+||||||+.|..++......+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 345579999999999999999999987776554444554444445555442 2789999999999999888889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
++|+|+++...-+... .+......++|+++++||+|+.+
T Consensus 163 ILVVda~dgv~~qT~e----~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 163 VLVVAADDGVMPQTIE----AISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred EEEEECCCCCCHhHHH----HHHHHHHcCCCEEEEEECccccc
Confidence 9999988632222211 11222224789999999999963
No 161
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.80 E-value=1.6e-18 Score=118.73 Aligned_cols=112 Identities=21% Similarity=0.190 Sum_probs=81.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccc----------------cceeeeEEEEEEEECCEEEEEEEecCCCccccccc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFI----------------TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (160)
+|+++|.+|+|||||++.|.+........ ...+.......+...+ ..+.+||+||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD--RRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC--EEEEEEeCCCcHHHHHH
Confidence 58999999999999999998766543321 1122233333333333 67999999999888888
Q ss_pred chhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
+...+..+|++++++|+.++.... ..+++..+.. .+.|+++++||+|+..
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~---~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQ-TREHLRIARE---GGLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH---CCCCeEEEEECCCCcc
Confidence 888899999999999998765433 2234433333 4789999999999974
No 162
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=4.5e-18 Score=129.08 Aligned_cols=137 Identities=18% Similarity=0.142 Sum_probs=93.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccc----ccccchhh---ccCCc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YRGAM 89 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~~~~ 89 (160)
.|+|+|.++||||||+++|++........+.++..+....+..++ ..+|.+||+||... ...+...+ +++++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 899999999999999999998764333233344445444455542 24799999999532 22233333 55699
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhc--ceEEEEee
Q 031411 90 GILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKREAPFCLHETILLTV--QVHLVILK 159 (160)
Q Consensus 90 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~k 159 (160)
++++|+|+++. +.++.+..|..++..+.+ .+.|++|++||+|+.+. .+..++++... .+..+||+
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-----~e~l~~l~~~l~~~i~~iSA~ 310 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-----EENLEEFKEKLGPKVFPISAL 310 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-----HHHHHHHHHHhCCcEEEEeCC
Confidence 99999999864 677888888888877643 46899999999998421 23345555544 34556654
No 163
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.79 E-value=9.5e-19 Score=120.74 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=73.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC----CC---CCccccceeeeEEEEEEEEC------------CEEEEEEEecCCCccc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG----SF---TTSFITTIGIDFKIRTIELD------------GKRIKLQIWDTAGQER 76 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~g~~~ 76 (160)
+||+++|+.++|||||+++|... .+ ..+..+..+.+.....+.+. +....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 48999999999999999999862 11 12222223333333333332 3357899999999865
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+..........+|++++|+|+.+.........+. +... .+.|+++++||+|+.
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLI 133 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccC
Confidence 4333333456789999999998754333322222 1111 256999999999986
No 164
>PRK15494 era GTPase Era; Provisional
Probab=99.79 E-value=1.7e-18 Score=128.81 Aligned_cols=136 Identities=20% Similarity=0.232 Sum_probs=87.3
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEEECCEEEEEEEecCCCccc-ccccc-------hh
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTIT-------TA 83 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~-------~~ 83 (160)
....+|+++|.+|+|||||+|+|.+..+.. +..+..+.+.....+..++ .++.+|||||... +..+. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 455799999999999999999999876642 1122222333344455555 4789999999743 22221 12
Q ss_pred hccCCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhc----ceEEEEe
Q 031411 84 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTV----QVHLVIL 158 (160)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~ 158 (160)
.+.++|++++|+|..+ +++... .|+..+.. .+.|.++++||+|+.+. ...++.+++.+. .+.++||
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~----~~~~~~~~l~~~~~~~~i~~iSA 198 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK----YLNDIKAFLTENHPDSLLFPISA 198 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc----cHHHHHHHHHhcCCCcEEEEEec
Confidence 3679999999999765 344443 34444433 24577889999999632 245566665543 3466666
Q ss_pred e
Q 031411 159 K 159 (160)
Q Consensus 159 k 159 (160)
|
T Consensus 199 k 199 (339)
T PRK15494 199 L 199 (339)
T ss_pred c
Confidence 4
No 165
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=3.6e-18 Score=132.23 Aligned_cols=114 Identities=24% Similarity=0.252 Sum_probs=81.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCccc--------ccccchhh
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAY 84 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~ 84 (160)
...+|+++|.+|+|||||+|+|.+.... ....++.+.+........++ ..+.+|||||... +...+..+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 3479999999999999999999986532 23344444555555556666 4688999999752 23334557
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+..+|++++|||+++..++.. ..+...+.. .+.|+++|+||+|+.
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~ 159 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDE 159 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCC
Confidence 889999999999998655432 233333332 378999999999986
No 166
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.4e-18 Score=115.77 Aligned_cols=141 Identities=26% Similarity=0.517 Sum_probs=118.0
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
-..++++++|..+.||||++++...+.|...+..+.+.+.....+..+...++|..|||.|++.+......++-+..+.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 35689999999999999999999999999999999998777666655655689999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
++||...+-.+.++..|-..+.+.+. ++||+++|||.|..+.. ...+...+.+..++.|+.
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~---~k~k~v~~~rkknl~y~~ 148 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK---VKAKPVSFHRKKNLQYYE 148 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc---cccccceeeecccceeEE
Confidence 99999999999999999999988888 69999999999985322 222333445555655543
No 167
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.79 E-value=2.5e-18 Score=124.53 Aligned_cols=134 Identities=16% Similarity=0.098 Sum_probs=84.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEEECCEEEEEEEecCCCcccccc--------cchhhccC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRG 87 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~ 87 (160)
+|+++|.+|+|||||+|+|.+..... +..+.++.+........++ .++.+|||||...... .....+.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999876532 2222222222212222233 4789999999653211 12345789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhc---ceEEEEee
Q 031411 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTV---QVHLVILK 159 (160)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~k 159 (160)
+|++++|+|+++..+.+ ..++..+.. .+.|+++++||+|+.+. ....+...+++... .+.++|||
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~v~~iSA~ 147 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFK--DKLLPLIDKYAILEDFKDIVPISAL 147 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCH--HHHHHHHHHHHhhcCCCceEEEecC
Confidence 99999999999876654 333333332 36799999999999622 11223344444433 45667765
No 168
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=2.8e-18 Score=132.87 Aligned_cols=115 Identities=24% Similarity=0.282 Sum_probs=84.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCccc----------ccccc-
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT- 81 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~- 81 (160)
..++|+++|.+++|||||+++|.+.... ....++.+.+.....+..++. .+.+|||+|..+ +..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999987642 334455555555566667774 567999999532 22221
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
..+++++|++++|+|+++..+++.+. ++..+.. .+.|+++++||+|+.+
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCC
Confidence 23568999999999999987777653 4444432 4789999999999964
No 169
>PRK11058 GTPase HflX; Provisional
Probab=99.78 E-value=2.8e-18 Score=130.74 Aligned_cols=118 Identities=25% Similarity=0.255 Sum_probs=85.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccc--cccch------hhcc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--RTITT------AYYR 86 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--~~~~~------~~~~ 86 (160)
..+|+++|.+|+|||||+|+|.+........+..+.+.....+...+. ..+.+|||+|..+. ...+. ..+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 368999999999999999999987654433444555666556666542 26789999997331 12222 2357
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
.+|++++|+|++++.+++.+..|...+......+.|+++++||+|+.
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 89999999999998888777655554544434478999999999996
No 170
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.78 E-value=3.5e-18 Score=137.64 Aligned_cols=114 Identities=20% Similarity=0.213 Sum_probs=86.9
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
..+...|+++|..++|||||+++|....+........+.+.....+.+++ ..++|||||||..|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 45667999999999999999999988766554444444444444555555 5789999999999999998889999999
Q ss_pred EEEEECCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 92 LLVYDVTDE---SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 92 i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
++|||+++. .+.+.+ ......++|++|++||+|+.+
T Consensus 365 ILVVdAddGv~~qT~e~i-------~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI-------NHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred EEEEECCCCCCHhHHHHH-------HHHHhcCCcEEEEEECccccc
Confidence 999999873 333322 222224789999999999964
No 171
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=8.6e-18 Score=111.77 Aligned_cols=131 Identities=25% Similarity=0.374 Sum_probs=95.4
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCC--------Cccc----cceeeeEEEEEEEECCEEEEEEEecCCCcccccc
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT--------TSFI----TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~--------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (160)
.....||++.|+.++||||+++.+...... .+.. .+..+++ ..+..++ ...+.+++||||++++.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~--g~~~~~~-~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDF--GSIELDE-DTGVHLFGTPGQERFKF 83 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecc--cceEEcC-cceEEEecCCCcHHHHH
Confidence 345689999999999999999999876531 1111 2222333 2333433 24688999999999999
Q ss_pred cchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHh
Q 031411 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETIL 148 (160)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~ 148 (160)
+|...+++++++++++|.+.+..+ +..+.+.-+.... .+|++|.+||.||.+........++.+++
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~ 149 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLE 149 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhc
Confidence 999999999999999999998887 4444444443322 28999999999998666655555565555
No 172
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=1.7e-17 Score=111.86 Aligned_cols=114 Identities=29% Similarity=0.271 Sum_probs=76.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccc----------c-ch
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------I-TT 82 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~-~~ 82 (160)
.++|+++|.+|+|||||++++.+.... ....+..+.......+..++ ..+.+||+||...... . ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 478999999999999999999986532 12222233333334445555 3578999999643311 0 12
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
..+..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+.+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVE 127 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCC
Confidence 346789999999999987665443 23322222 3689999999999963
No 173
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.77 E-value=9.3e-18 Score=126.60 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=95.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccccc-------ccchhhccCC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGA 88 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~ 88 (160)
..|.|+|.+|+|||||+|+|++........+.++.......+...+ ..++.++|+||...-. ......++++
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 3799999999999999999998765444344444445544555543 2368999999964211 1112357889
Q ss_pred cEEEEEEECC---ChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhc----ceEEEEee
Q 031411 89 MGILLVYDVT---DESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKREAPFCLHETILLTV----QVHLVILK 159 (160)
Q Consensus 89 ~~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~--~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~k 159 (160)
+++++++|++ +.+.++.+..|+.++..+.. .+.|+++++||+|+.+... ..+..+++.... .+.++||+
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e--l~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE--AEERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH--HHHHHHHHHHHhCCCCCEEEEECC
Confidence 9999999998 45677788888888876542 3679999999999963321 123344444442 35666664
No 174
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.77 E-value=6.8e-18 Score=119.88 Aligned_cols=126 Identities=18% Similarity=0.152 Sum_probs=86.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC------------------CccccceeeeEEEEEEEECCEEEEEEEecCCCccccc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (160)
+|+++|..++|||||+++|+..... .+.....++......+..++ .++.+|||||+..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence 5899999999999999999753110 01111122223333444444 689999999999888
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHh
Q 031411 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETIL 148 (160)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~ 148 (160)
..+...++.+|++++|+|+.+.... ...+++..+.. .++|+++++||+|+.+.......+++++..
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~a~~~~~~~~i~~~~ 144 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAGADLEKVYQEIKEKL 144 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccCCCHHHHHHHHHHHH
Confidence 8888899999999999999876433 33444444443 378999999999997544444444444433
No 175
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.77 E-value=4.5e-18 Score=130.78 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=82.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccc----cccc---chhhccC
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTI---TTAYYRG 87 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~---~~~~~~~ 87 (160)
..+|+|+|.+|+|||||+++|++........+.++..+....+...+ .+|.+||+||... ...+ ....+++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 36899999999999999999998654433334445555555666666 5799999999521 1111 1224678
Q ss_pred CcEEEEEEECCC----hhhHHHHHHHHHHHHHhc-----------CCCCcEEEEEeCCCCCC
Q 031411 88 AMGILLVYDVTD----ESSFNNIRNWIRNIEQHA-----------SDNVNKILVGNKADMDE 134 (160)
Q Consensus 88 ~~~~i~v~d~~~----~~~~~~~~~~~~~~~~~~-----------~~~~pi~vv~~K~Dl~~ 134 (160)
++++++|+|+++ ++.++.+..|..++..+. ..+.|++|++||+|+++
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~d 298 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPD 298 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchh
Confidence 999999999975 235555555555554433 13689999999999963
No 176
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.77 E-value=9.5e-18 Score=132.39 Aligned_cols=126 Identities=21% Similarity=0.245 Sum_probs=91.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc---CCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD---GSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
+.|+++|..++|||||+++|.+ +.+.++..++.+.+.....+..++ ..+.+||+||+++|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 4689999999999999999996 334455556666666656666666 68999999999998887788889999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcc-CCChhHHHHHhhh
Q 031411 93 LVYDVTD---ESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKR-EAPFCLHETILLT 150 (160)
Q Consensus 93 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p-i~vv~~K~Dl~~~~~-~~~~~~~~~~~~~ 150 (160)
+|+|+++ +.+.+.+. .+.. .++| +++++||+|+.+... ....++++++...
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~ 134 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNS 134 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999987 44444432 2221 2567 999999999974332 1223445555543
No 177
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.8e-18 Score=113.01 Aligned_cols=120 Identities=21% Similarity=0.365 Sum_probs=100.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
..-|++++|..|+|||||++.|..+...+. .||. ++++..+.+.+ .+|+.+|++||....+.|..++..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh-vPTl--HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH-VPTL--HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccccc-CCCc--CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 345899999999999999999998775543 3433 35556667766 689999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccC
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRE 138 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~ 138 (160)
.+|+.+.+.|.+.++.+..+.... -..+|+++++||+|.+....+
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se 139 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASE 139 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccH
Confidence 999999999999998888876644 358999999999999865543
No 178
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.76 E-value=1.3e-17 Score=117.20 Aligned_cols=121 Identities=19% Similarity=0.187 Sum_probs=81.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC----------------CccccceeeeEEEEEEEEC--------CEEEEEEEecCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFT----------------TSFITTIGIDFKIRTIELD--------GKRIKLQIWDTA 72 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~D~~ 72 (160)
+|+++|..++|||||+++|+..... .+.....++......+.+. ++.+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999999753211 0111111222222222232 346889999999
Q ss_pred CcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCCh
Q 031411 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPF 141 (160)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~ 141 (160)
|+..+.......+..+|++++|+|+.+....+... .+.... ..++|+++++||+|+...+.....
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~~~---~~~~p~ilviNKiD~~~~e~~~~~ 146 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQAL---KERVKPVLVINKIDRLILELKLSP 146 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHHHH---HcCCCEEEEEECCCcchhhhcCCH
Confidence 99999988899999999999999998765544322 222222 236799999999998633333433
No 179
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=9.3e-19 Score=115.09 Aligned_cols=129 Identities=25% Similarity=0.420 Sum_probs=99.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc---CCC----CCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhcc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSD---GSF----TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 86 (160)
..+.++++|..++|||||+..... ..+ +..-.++.+ .+..++.+++ ..+.+||.+|++..+++|..++.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVCN--APLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeecc--ceeEEEEcCChHHHHHHHHHHHH
Confidence 347899999999999999987753 122 233445555 3444555554 57899999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCccCCChhHHHH
Q 031411 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKREAPFCLHET 146 (160)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~ 146 (160)
.+|++++++|+++++.|+.....+..+..+ .-.+.|+++++||.|+.+.....+.+....
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~ 152 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFG 152 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhh
Confidence 999999999999999999988888887554 346899999999999975444444433333
No 180
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.76 E-value=8.3e-18 Score=134.51 Aligned_cols=116 Identities=20% Similarity=0.202 Sum_probs=85.5
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeee--EEEEEEEECCEEEEEEEecCCCcccccccchhhccCCc
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGID--FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (160)
.++..+|+++|..++|||||+++|....+.....++.+.+ .+...+..++....+.||||||+..|..++...+..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 3455799999999999999999999876654433333322 23333344444578999999999999999998999999
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 90 GILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 90 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
++++|+|+.+. .+++.+. .+ ...++|+++++||+|+.+
T Consensus 321 iaILVVDA~dGv~~QT~E~I~----~~---k~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAIN----YI---QAANVPIIVAINKIDKAN 361 (742)
T ss_pred EEEEEEECcCCCChhhHHHHH----HH---HhcCceEEEEEECCCccc
Confidence 99999999874 3333322 12 224789999999999964
No 181
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.75 E-value=1.5e-17 Score=127.41 Aligned_cols=137 Identities=20% Similarity=0.102 Sum_probs=88.2
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhc--CCCC-----------------------------CccccceeeeEEEEEEEEC
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSD--GSFT-----------------------------TSFITTIGIDFKIRTIELD 60 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 60 (160)
....++|+++|..++|||||+++|+. +... .+.....+.+.....+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45669999999999999999999974 2111 1122344444444444444
Q ss_pred CEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHH--HHHhcCCCCcEEEEEeCCCCCCCcc-
Q 031411 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN--IEQHASDNVNKILVGNKADMDESKR- 137 (160)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~~~pi~vv~~K~Dl~~~~~- 137 (160)
+ ..+.+||+||++.+.......+..+|++++|+|+++.+++ ...++... +..... ..|+++++||+|+.+...
T Consensus 84 ~--~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~-~~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 84 K--YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE-VQPQTREHAFLARTLG-INQLIVAINKMDSVNYDEE 159 (426)
T ss_pred C--eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc-cCCchHHHHHHHHHcC-CCeEEEEEEChhccCccHH
Confidence 4 6899999999988766555567899999999999987532 11112111 222222 357999999999963221
Q ss_pred --CCChhHHHHHhhhcc
Q 031411 138 --EAPFCLHETILLTVQ 152 (160)
Q Consensus 138 --~~~~~~~~~~~~~~~ 152 (160)
....++++++++..+
T Consensus 160 ~~~~~~~ei~~~~~~~g 176 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVG 176 (426)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 122455666666554
No 182
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.75 E-value=1.3e-17 Score=131.80 Aligned_cols=117 Identities=22% Similarity=0.263 Sum_probs=83.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCC--CC-------------CccccceeeeEEEEEEEE---CCEEEEEEEecCCCcc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGS--FT-------------TSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQE 75 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~--~~-------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~ 75 (160)
..-+++++|..++|||||+++|+... .. .+.....++......+.+ ++..+.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 34599999999999999999998631 11 011122222222222222 4556899999999999
Q ss_pred cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.+...+...+..+|++++|+|+++....+....|.... ..++|+++++||+|+.+
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPA 140 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCc
Confidence 99888889999999999999999865555555554332 23789999999999963
No 183
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=6.8e-17 Score=124.01 Aligned_cols=115 Identities=30% Similarity=0.250 Sum_probs=81.4
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccc----------
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT---------- 81 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~---------- 81 (160)
...++++++|.+++|||||+++|++.... ....+..+.+.....+..++. .+.+|||||..+.....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 45689999999999999999999976532 223333444444445555663 68999999975543321
Q ss_pred -hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 82 -TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 82 -~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
...++.+|++++|+|++++.+.... +++..+.. .+.|+++++||+|+.
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEECcccC
Confidence 2357899999999999987665554 23333322 378999999999996
No 184
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=2.2e-17 Score=109.77 Aligned_cols=111 Identities=23% Similarity=0.182 Sum_probs=74.1
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccc--------cchhhccCCc
Q 031411 19 LLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRGAM 89 (160)
Q Consensus 19 ~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~~ 89 (160)
+++|.+|+|||||+++|.+.... ....+..+.+........++ ..+.+|||||+..+.. .....+.++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999976421 11222333334444555555 5789999999876543 2345678899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
++++++|..+..+.... .....+.. .+.|+++++||+|+.+.
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKE 120 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCCh
Confidence 99999999765433322 12222222 25899999999999743
No 185
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.75 E-value=1.9e-17 Score=126.83 Aligned_cols=137 Identities=20% Similarity=0.120 Sum_probs=85.3
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCccccceeeeEEEEEEEEC
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIELD 60 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 60 (160)
.+..++|+++|..++|||||+++|+.... .++..+..+.+.....+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 44569999999999999999999983211 11123334444444444444
Q ss_pred CEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc--
Q 031411 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKILVGNKADMDESKR-- 137 (160)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~-- 137 (160)
+ +.+.+|||||++++.......+..+|++++|+|++++..+.. ..+++..+. ... ..|+++++||+|+.+...
T Consensus 83 ~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~-~~~iivviNK~Dl~~~~~~~ 158 (425)
T PRK12317 83 K--YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLAR-TLG-INQLIVAINKMDAVNYDEKR 158 (425)
T ss_pred C--eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcC-CCeEEEEEEccccccccHHH
Confidence 4 689999999998776655556788999999999986312211 112222222 211 246999999999964221
Q ss_pred -CCChhHHHHHhhhcc
Q 031411 138 -EAPFCLHETILLTVQ 152 (160)
Q Consensus 138 -~~~~~~~~~~~~~~~ 152 (160)
....+++.++....+
T Consensus 159 ~~~~~~~i~~~l~~~g 174 (425)
T PRK12317 159 YEEVKEEVSKLLKMVG 174 (425)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 122345555554443
No 186
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=3.9e-17 Score=125.55 Aligned_cols=110 Identities=26% Similarity=0.227 Sum_probs=79.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCccc--------ccccchhhcc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYYR 86 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 86 (160)
.+|+++|.+|+|||||+++|.+.... ....+..+.+.....+..++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999976532 22234444455555666666 6799999999876 2222345678
Q ss_pred CCcEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 87 GAMGILLVYDVTDESSF--NNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 87 ~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
.+|++++|+|+.++.+. ..+.+|+.. .+.|+++++||+|+.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~ 122 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGP 122 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCc
Confidence 99999999999875332 234444433 268999999999975
No 187
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.74 E-value=2.5e-17 Score=113.72 Aligned_cols=139 Identities=22% Similarity=0.250 Sum_probs=82.8
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCc----------ccccccc
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTIT 81 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~ 81 (160)
.+..++|+++|.+|+|||||++++.+..+.....++.+.......... ...+.+||+||. +.+..+.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 446689999999999999999999987644333333332222222222 257999999994 2333333
Q ss_pred hhhccC---CcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-cCCChhHHHHHhhh--cce
Q 031411 82 TAYYRG---AMGILLVYDVTDESSFNN--IRNWIRNIEQHASDNVNKILVGNKADMDESK-REAPFCLHETILLT--VQV 153 (160)
Q Consensus 82 ~~~~~~---~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~-~~~~~~~~~~~~~~--~~~ 153 (160)
..++.. .+++++++|.+++..... +.+|+ . ..+.|+++++||+|+.+.. .+...+++++.... ..+
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~ 171 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWL---K---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV 171 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHH---H---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce
Confidence 444443 467888898876533322 22232 2 1368999999999986332 22223334444443 345
Q ss_pred EEEEee
Q 031411 154 HLVILK 159 (160)
Q Consensus 154 ~~~~~k 159 (160)
.+++++
T Consensus 172 ~~~Sa~ 177 (196)
T PRK00454 172 ILFSSL 177 (196)
T ss_pred EEEEcC
Confidence 555543
No 188
>PRK10218 GTP-binding protein; Provisional
Probab=99.74 E-value=7.1e-17 Score=127.43 Aligned_cols=131 Identities=19% Similarity=0.201 Sum_probs=91.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc--CCCCCcc------------ccceeeeEEEEEEEECCEEEEEEEecCCCcccccc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSD--GSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (160)
...+|+++|..++|||||+++|+. +.+.... ....++........+....+.+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 346999999999999999999986 3332211 12233344444444444457899999999999998
Q ss_pred cchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHh
Q 031411 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETIL 148 (160)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~ 148 (160)
.+..+++.+|++++|+|+.+....+ ...++..+.. .++|.++++||+|+.+.......+++.++.
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~ 148 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLF 148 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHH
Confidence 8999999999999999998743222 2233333322 378999999999997555545556666664
No 189
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.74 E-value=3.1e-17 Score=118.90 Aligned_cols=138 Identities=19% Similarity=0.245 Sum_probs=88.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCc----------cccceeeeEEEEEEEECCEEEEEEEecCCCcccc------
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF------ 77 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------ 77 (160)
..++|+++|.+|+|||||+|+|.+..+... ..++.........+..++..+.+.+|||||-...
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998766433 2344445555556666787889999999992111
Q ss_pred -c-------------------ccchhhcc--CCcEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 78 -R-------------------TITTAYYR--GAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 78 -~-------------------~~~~~~~~--~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
. ..+...+. ++|+++++++.+.. .+... .+.+..+. . .+|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~-~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---K-RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---c-cCCEEEEEECCCcCC
Confidence 0 01112333 46777777776541 11111 22233332 2 689999999999853
Q ss_pred C-ccCCChhHHHHHhhhcceEEE
Q 031411 135 S-KREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 135 ~-~~~~~~~~~~~~~~~~~~~~~ 156 (160)
. +.....+.+++.+..+++.++
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~ 180 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIY 180 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceE
Confidence 2 333445667777777777655
No 190
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.74 E-value=3.5e-17 Score=114.32 Aligned_cols=138 Identities=19% Similarity=0.091 Sum_probs=83.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-C------------------------------ccccceeeeEEEEEEEECCEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFT-T------------------------------SFITTIGIDFKIRTIELDGKRIK 65 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (160)
||+++|.+++|||||++.|+..... . +..+..+.+.....+..++ .+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 5899999999999999999742211 1 0112233333333444444 57
Q ss_pred EEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccC---CChh
Q 031411 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRE---APFC 142 (160)
Q Consensus 66 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~---~~~~ 142 (160)
+.+|||||+..+.......+..+|++++|+|+++...-+ .......+.. .. ..++++++||+|+.+.... ....
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~-~~-~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSL-LG-IRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHH-cC-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence 889999999877655566788999999999998653211 1111111221 11 2357888999999642221 1223
Q ss_pred HHHHHhhhcc-----eEEEEee
Q 031411 143 LHETILLTVQ-----VHLVILK 159 (160)
Q Consensus 143 ~~~~~~~~~~-----~~~~~~k 159 (160)
+.+++...++ +..+||+
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~ 177 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISAL 177 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCC
Confidence 4555555544 4566654
No 191
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.74 E-value=9.9e-18 Score=115.32 Aligned_cols=116 Identities=23% Similarity=0.243 Sum_probs=79.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC------------------CccccceeeeEEEEEEEECCEEEEEEEecCCCcc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 75 (160)
...+|+++|+.++|||||+++|+..... .+.....+.......+..+.....++++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999999853211 1111222233344444411223689999999999
Q ss_pred cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
.+.......+..+|++++|+|+.+..... ..+.+..+.. .++|++++.||+|+.
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~---~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE---LGIPIIVVLNKMDLI 135 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH---TT-SEEEEEETCTSS
T ss_pred ceeecccceecccccceeeeecccccccc-cccccccccc---cccceEEeeeeccch
Confidence 88887888899999999999998653322 2222223322 378999999999997
No 192
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.74 E-value=7.1e-17 Score=116.49 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=77.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-C---------------------ccccceeeeEEEEEEEECCEEEEEEEecCCC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-T---------------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~-~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 73 (160)
-+|+++|..++|||||+++|+..... . +.....++......+..++ +.+.+|||||
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~--~~i~liDTPG 80 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRD--CVINLLDTPG 80 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCC--EEEEEEECCC
Confidence 48999999999999999999742110 0 0011112222233344444 7899999999
Q ss_pred cccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
+.++.......++.+|++++|+|+++.... ....++..... .++|+++++||+|+.+.
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence 988877667778999999999999875322 22233333322 37899999999998644
No 193
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.73 E-value=3.6e-18 Score=115.49 Aligned_cols=117 Identities=22% Similarity=0.385 Sum_probs=74.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEE-CCEEEEEEEecCCCcccccccchhh---ccCCcE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAY---YRGAMG 90 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~---~~~~~~ 90 (160)
+-.|+++|+.|+|||+|+.+|..+...+...+.. ... .... +...-.+.++|+|||.+........ ...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e---~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSME---NNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SS---EEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeecccc---CCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 3479999999999999999999987665544432 221 1222 1222468899999999887644443 788999
Q ss_pred EEEEEECCC-hhhHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCC
Q 031411 91 ILLVYDVTD-ESSFNNIRNWIRNIEQH---ASDNVNKILVGNKADMDES 135 (160)
Q Consensus 91 ~i~v~d~~~-~~~~~~~~~~~~~~~~~---~~~~~pi~vv~~K~Dl~~~ 135 (160)
+|+|+|++. +..+..+.+.+-.+... ....+|++|++||.|+...
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 999999974 44555666655555332 2467899999999999743
No 194
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.73 E-value=2.1e-16 Score=112.11 Aligned_cols=83 Identities=27% Similarity=0.282 Sum_probs=59.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccccc-------ccchhhccCCc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGAM 89 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~~ 89 (160)
+++++|++|+|||||+++|.+........+..+.+.....+.+++ ..+++||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998654322223333344444555666 578999999974332 12345688999
Q ss_pred EEEEEEECCChh
Q 031411 90 GILLVYDVTDES 101 (160)
Q Consensus 90 ~~i~v~d~~~~~ 101 (160)
++++|+|++++.
T Consensus 80 ~il~V~D~t~~~ 91 (233)
T cd01896 80 LILMVLDATKPE 91 (233)
T ss_pred EEEEEecCCcch
Confidence 999999998754
No 195
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.73 E-value=1.3e-17 Score=111.69 Aligned_cols=113 Identities=21% Similarity=0.252 Sum_probs=74.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccc----hhhccCCcEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----TAYYRGAMGIL 92 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----~~~~~~~~~~i 92 (160)
+|+++|.+++|||||+++|.+.. ... ..+ ..+.++.. .+||+||.......+ ...++++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~~-~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TLA-RKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-ccC-ccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999987643 111 111 12223332 269999973222111 23368999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcc
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQ 152 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~ 152 (160)
+|+|+++..++ +..|+..+ ..+.|+++++||+|+.+ ...++.++++.+.+
T Consensus 70 ~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~----~~~~~~~~~~~~~~ 119 (158)
T PRK15467 70 YVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPD----ADVAATRKLLLETG 119 (158)
T ss_pred EEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCc----ccHHHHHHHHHHcC
Confidence 99999987765 33354443 13679999999999963 34566677776665
No 196
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.73 E-value=3.4e-17 Score=113.99 Aligned_cols=142 Identities=16% Similarity=0.149 Sum_probs=83.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC---CCccccceeeeEEEEEEEEC---------------------------C----
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRTIELD---------------------------G---- 61 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 61 (160)
++|+++|+.++|||||++.+.+... ..+.....++......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975421 12222222221111111110 1
Q ss_pred EEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-CCC
Q 031411 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-EAP 140 (160)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~-~~~ 140 (160)
...++.|||+||++.+.......+..+|++++|+|+.++.........+..+.. . ...|+++++||+|+.+... ...
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~-~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-M-GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-c-CCCcEEEEEEchhccCHHHHHHH
Confidence 115789999999988877777777889999999999863211111112222221 1 1347999999999963221 222
Q ss_pred hhHHHHHhhh-----cceEEEEee
Q 031411 141 FCLHETILLT-----VQVHLVILK 159 (160)
Q Consensus 141 ~~~~~~~~~~-----~~~~~~~~k 159 (160)
.++.+++... ..+.++||+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~ 182 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQ 182 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCC
Confidence 3445555443 345666664
No 197
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.73 E-value=1.2e-16 Score=111.99 Aligned_cols=113 Identities=27% Similarity=0.292 Sum_probs=79.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCc-------------------cccceeeeEEEEEEEE---CCEEEEEEEecCCCc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTS-------------------FITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ 74 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~ 74 (160)
+|+++|+.++|||||+++|........ .....++......+.. ++..+.+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986433211 1111111111112211 355689999999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
..+.......+..+|++++|+|+.+..+... .+++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9888888888999999999999987655432 334444332 358999999999974
No 198
>PRK00089 era GTPase Era; Reviewed
Probab=99.73 E-value=8.6e-17 Score=117.73 Aligned_cols=138 Identities=18% Similarity=0.154 Sum_probs=81.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEEECCEEEEEEEecCCCccccc--------ccchhh
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAY 84 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~ 84 (160)
+.-.|+++|.+|+|||||+|+|.+..... +..+.++..........+ ..++.+|||||..... ......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 34679999999999999999999876532 111212211111112222 2689999999964322 223345
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhc---ceEEEEee
Q 031411 85 YRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTV---QVHLVILK 159 (160)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~k 159 (160)
+.++|++++++|+++... ....++ ..+. ..+.|+++++||+|+... .....+..+++.... .+..+|++
T Consensus 82 ~~~~D~il~vvd~~~~~~--~~~~~i~~~l~---~~~~pvilVlNKiDl~~~-~~~l~~~~~~l~~~~~~~~i~~iSA~ 154 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIG--PGDEFILEKLK---KVKTPVILVLNKIDLVKD-KEELLPLLEELSELMDFAEIVPISAL 154 (292)
T ss_pred HhcCCEEEEEEeCCCCCC--hhHHHHHHHHh---hcCCCEEEEEECCcCCCC-HHHHHHHHHHHHhhCCCCeEEEecCC
Confidence 788999999999987211 122222 2222 236799999999999622 122233344444432 34455553
No 199
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.72 E-value=2e-16 Score=105.75 Aligned_cols=114 Identities=17% Similarity=0.130 Sum_probs=72.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccc--------cchhhcc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYR 86 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~ 86 (160)
..+|+++|++|+|||||++++.+................ ...........+.+||+||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR-IRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece-EEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 478999999999999999999976542111111111111 1112222246789999999653322 2234577
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
.+|++++|+|++++.+ +....+...+.. .+.|+++++||+|+.
T Consensus 82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~---~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 82 DVDLVLFVVDASEPIG-EGDEFILELLKK---SKTPVILVLNKIDLV 124 (168)
T ss_pred hCCEEEEEEECCCccC-chHHHHHHHHHH---hCCCEEEEEEchhcc
Confidence 8999999999987621 112223333332 257999999999996
No 200
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.72 E-value=3e-16 Score=126.95 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=87.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccccccc----------chhh
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------TTAY 84 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~~ 84 (160)
.++|+++|++|+|||||+|++++........+..+.+.....+..++ .++.+||+||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHHH
Confidence 46899999999999999999998665444445455444434444433 67899999998765432 1222
Q ss_pred c--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceE
Q 031411 85 Y--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVH 154 (160)
Q Consensus 85 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~ 154 (160)
+ ..+|++++|+|+++.+.. ..+..++.+ .++|+++++||+|+.++ ... ..+.+++.+..++.
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~-~~i-~id~~~L~~~LG~p 144 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEK-QNI-RIDIDALSARLGCP 144 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhc-cCc-HHHHHHHHHHhCCC
Confidence 2 479999999999875432 234444433 37899999999998632 222 24466677766654
No 201
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.72 E-value=9.4e-17 Score=126.74 Aligned_cols=126 Identities=21% Similarity=0.261 Sum_probs=88.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCCCC--------------ccccceeeeEEEEEEEECCEEEEEEEecCCCccccccc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD--GSFTT--------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (160)
+|+++|..++|||||+++|+. +.+.. +.....++......+.+++ +.+++|||||+..|...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGGE 80 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHHH
Confidence 799999999999999999985 22211 1122233333333445554 78999999999999888
Q ss_pred chhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHh
Q 031411 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETIL 148 (160)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~ 148 (160)
+...+..+|++++|+|+.+. .......|+..+.. .++|+++++||+|+.+.......+++.++.
T Consensus 81 v~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~ 144 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLF 144 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHH
Confidence 88899999999999999763 23444555555544 378999999999996433322344555554
No 202
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.72 E-value=2e-16 Score=121.41 Aligned_cols=110 Identities=28% Similarity=0.338 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcc--------cccccchhhccC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAYYRG 87 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~ 87 (160)
+|+++|.+|+|||||+|+|.+.... ....+..+.+.....+..++ ..+.+|||||.. .+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999986532 22334444445555666666 469999999963 333445567889
Q ss_pred CcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 88 AMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 88 ~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
+|++++|+|+.+..+.. .+.+|+.. .+.|+++++||+|+.+
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~~------~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLRK------SGKPVILVANKIDGKK 121 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHH------hCCCEEEEEECccCCc
Confidence 99999999998743322 33334332 2679999999999863
No 203
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.72 E-value=2.1e-16 Score=114.17 Aligned_cols=127 Identities=19% Similarity=0.089 Sum_probs=85.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC------------------CCccccceeeeEEEEEEEECCEEEEEEEecCCCccccc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (160)
+|+++|.+++|||||+++|+.... +.+..+..+++.....+.+++ .++.+|||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 589999999999999999973111 112233333444445555555 688999999998887
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhh
Q 031411 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILL 149 (160)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~ 149 (160)
..+...+..+|++++|+|+.+...-.. ...+..+.. .++|++++.||+|+.+.......+++++...
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~ 145 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTGADFFRVVEQIREKLG 145 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 778889999999999999977432221 222333322 3689999999999974333333444444433
No 204
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.71 E-value=1.4e-16 Score=125.88 Aligned_cols=128 Identities=19% Similarity=0.160 Sum_probs=88.1
Q ss_pred cCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccccccc------chhhc--cCCcEEEE
Q 031411 22 GDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY--RGAMGILL 93 (160)
Q Consensus 22 G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~i~ 93 (160)
|++|+|||||+|++.+........++.+.+.....+..++ .++.+||+||+..+... ...++ .++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998876555566666666666667766 45899999998776543 23333 47899999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceE--EEEee
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVH--LVILK 159 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~k 159 (160)
|+|+++.+. ...+..++. ..+.|+++++||+|+.++. ... .+.+++++..++. .+|+|
T Consensus 79 VvDat~ler---~l~l~~ql~---~~~~PiIIVlNK~Dl~~~~-~i~-~d~~~L~~~lg~pvv~tSA~ 138 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLL---ELGIPMILALNLVDEAEKK-GIR-IDEEKLEERLGVPVVPTSAT 138 (591)
T ss_pred EecCCcchh---hHHHHHHHH---hcCCCEEEEEehhHHHHhC-CCh-hhHHHHHHHcCCCEEEEECC
Confidence 999986432 223333332 2478999999999986332 222 3466777776654 44543
No 205
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.71 E-value=1.7e-16 Score=128.16 Aligned_cols=115 Identities=23% Similarity=0.294 Sum_probs=81.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCccc----------ccccc-
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT- 81 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~- 81 (160)
..++|+++|.+|+|||||+|+|.+.... ....++++.+.....+.+++. .+.+|||||..+ +..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999987642 233344445555556666764 567999999532 11111
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
...++++|++++|+|+++..+.+... ++..+.. .+.|+++++||+|+.+
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMD 575 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCC
Confidence 23468899999999999887776654 3333332 4789999999999963
No 206
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=6.7e-16 Score=118.72 Aligned_cols=115 Identities=29% Similarity=0.243 Sum_probs=79.7
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeEEEEEEEECCEEEEEEEecCCCccccccc-----------
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------- 80 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------- 80 (160)
+..++|+++|.+++|||||+++|++... .....++.+.+.....+..++ ..+.+|||||..+....
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3569999999999999999999997542 233334444444444455555 46789999996432211
Q ss_pred chhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
....+..+|++++|+|++++.+.... +++..+.. .+.|+++++||+|+.
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLV 297 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCC
Confidence 12357789999999999987665443 23333322 368999999999996
No 207
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.70 E-value=1.8e-19 Score=119.79 Aligned_cols=142 Identities=32% Similarity=0.642 Sum_probs=120.3
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCE-EEEEEEecCCCcccccccchhhccCCcE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRTITTAYYRGAMG 90 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (160)
...-++++|+|.-++|||+++.+...+.+...+..+.+.++....+..++. .+++.+||..||+++..+..-+++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 456689999999999999999999999998889999998887777777654 4688999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh--cC--CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcce
Q 031411 91 ILLVYDVTDESSFNNIRNWIRNIEQH--AS--DNVNKILVGNKADMDESKREAPFCLHETILLTVQV 153 (160)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~--~~--~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (160)
.++|||.+....|+...+|.+.+..- .+ .-+|+++++||+|+.........++..+++++++.
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf 168 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGF 168 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCc
Confidence 99999999999999999999999552 22 34688999999999744444445777888888764
No 208
>COG1159 Era GTPase [General function prediction only]
Probab=99.69 E-value=1.7e-16 Score=113.33 Aligned_cols=115 Identities=21% Similarity=0.182 Sum_probs=75.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccc--------cccchhh
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--------RTITTAY 84 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~ 84 (160)
+.--|+++|.||+|||||+|.+.+.+.. .+.-+.++...-...++.+ ..++.|.||||-.+- .......
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 3467999999999999999999997664 2222222222222233333 368999999994322 2223455
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 85 YRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
+.++|++++++|+.++-. .-.+++ ..+.. .+.|++++.||.|+...
T Consensus 83 l~dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~ 129 (298)
T COG1159 83 LKDVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKP 129 (298)
T ss_pred hccCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCc
Confidence 789999999999987322 122222 22322 36799999999998633
No 209
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=1.7e-15 Score=122.48 Aligned_cols=116 Identities=19% Similarity=0.139 Sum_probs=78.9
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCccc--------ccccch
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITT 82 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~ 82 (160)
.....+|+++|.+++|||||+|+|.+.... ....++.+.+........++ ..+.+|||||... +.....
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~ 349 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQ 349 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence 334578999999999999999999976532 22334444444444445555 4789999999653 222334
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
.++..+|++++|+|+++.-... -..|...+.. .+.|+++++||+|+.
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~---~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTST-DERIVRMLRR---AGKPVVLAVNKIDDQ 396 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHh---cCCCEEEEEECcccc
Confidence 5678999999999997632111 1134343432 478999999999985
No 210
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.69 E-value=4.3e-16 Score=103.17 Aligned_cols=110 Identities=22% Similarity=0.167 Sum_probs=74.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccc-------cchhhccCCcEE
Q 031411 20 LIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYYRGAMGI 91 (160)
Q Consensus 20 v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~~~~ 91 (160)
++|+.|+|||||++++.+.... .......+............ ...+.+||+||...... .....+..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999976544 22222222233333333332 35799999999765443 233467899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
++++|+.+........ +..... ..+.|+++++||+|+..
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLP 118 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCC
Confidence 9999999877665554 333332 24789999999999863
No 211
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.69 E-value=1.3e-16 Score=122.07 Aligned_cols=124 Identities=28% Similarity=0.411 Sum_probs=96.8
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...+||+++|+.|+||||||-.+....+++...+.... ......+.-..+...+.|++...+........++++|++.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~--i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR--ILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc--cccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 45599999999999999999999999988775554442 1122233333467889999876665666678899999999
Q ss_pred EEEECCChhhHHHHHH-HHHHHHHhcC--CCCcEEEEEeCCCCCCCccC
Q 031411 93 LVYDVTDESSFNNIRN-WIRNIEQHAS--DNVNKILVGNKADMDESKRE 138 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~-~~~~~~~~~~--~~~pi~vv~~K~Dl~~~~~~ 138 (160)
++|+.+++.+++.+.. |+..+.+... ..+|||++|||+|.......
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 9999999999998865 9999988662 47899999999998644433
No 212
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.68 E-value=3.3e-16 Score=110.23 Aligned_cols=113 Identities=20% Similarity=0.143 Sum_probs=73.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCccccceeeeEEEEEEEECCEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIELDGKRIK 65 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (160)
+|+++|..++|||||+..|+.... ..+..+..+.+.....+..++ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 589999999999999999863210 111222233344444445554 68
Q ss_pred EEEecCCCcccccccchhhccCCcEEEEEEECCChhh---HH---HHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FN---NIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 66 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+.+||+||+..+.......+..+|++++|+|+++... +. ...+.+... ... ...|+++++||+|+.
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~iiivvNK~Dl~ 150 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL-GVKQLIVAVNKMDDV 150 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc-CCCeEEEEEEccccc
Confidence 9999999997776666666788999999999987421 11 111222222 211 235899999999997
No 213
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.68 E-value=4e-16 Score=109.78 Aligned_cols=115 Identities=19% Similarity=0.334 Sum_probs=76.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccc-cceeeeEEEEEEEECCEEEEEEEecCCCccccc-----ccchhhccCCcE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-----TITTAYYRGAMG 90 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-----~~~~~~~~~~~~ 90 (160)
||+++|+.++||||+.+.+..+..+.+.. -..+.+.....+...+ ...+.+||+||+..+. ......++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~-~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS-FLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT-SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC-CcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999999999865443322 1222333334444333 2589999999986543 345778899999
Q ss_pred EEEEEECCChh---hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 91 ILLVYDVTDES---SFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 91 ~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+|+|+|+.+.+ .+..+...+..+.++.+ +..+.++.+|+|+.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l 124 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLL 124 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccC
Confidence 99999998433 34455556666666666 89999999999985
No 214
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.68 E-value=1.1e-15 Score=105.60 Aligned_cols=113 Identities=20% Similarity=0.162 Sum_probs=75.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC----------------CCccccceeeeEEEEEEEECCEEEEEEEecCCCccccc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (160)
.++|+++|..++|||||+++|+.... ..+..+..+.+.. ...+.....++.+.||||+..+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTA--HVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEee--eeEecCCCeEEEEEECcCHHHHH
Confidence 47999999999999999999975310 1111233333333 33333334678999999998877
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 031411 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMD 133 (160)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-i~vv~~K~Dl~ 133 (160)
......+..+|++++|+|+...-. ....+.+..+.. .++| ++++.||+|+.
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~---~~~~~iIvviNK~D~~ 131 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ---VGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCcEEEEEeCCCCC
Confidence 766777889999999999976422 122223333332 2566 77889999985
No 215
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.68 E-value=3.9e-16 Score=122.91 Aligned_cols=112 Identities=17% Similarity=0.131 Sum_probs=77.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeee--EEEEEEEEC--------------CEEEEEEEecCCCcccccc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGID--FKIRTIELD--------------GKRIKLQIWDTAGQERFRT 79 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~--------------~~~~~~~~~D~~g~~~~~~ 79 (160)
.-|+++|.+++|||||+++|.+..+......+.+.+ ......... .....+.+|||||++.+..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 469999999999999999999876543322211111 111111110 0012388999999999999
Q ss_pred cchhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 80 ITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
++...+..+|++++|||+++ +.+++.+.. +. ..++|+++++||+|+.+
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~---~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALNI----LR---MYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HH---HcCCCEEEEEECCCccc
Confidence 89889999999999999987 455544431 11 13789999999999963
No 216
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.68 E-value=1.8e-15 Score=96.26 Aligned_cols=106 Identities=25% Similarity=0.267 Sum_probs=69.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeEEEEEEEECCEEEEEEEecCCCcccc---------cccchhhcc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITTAYYR 86 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~ 86 (160)
+|+++|.+|+|||||+|.|.+... .....+..+.......+..++. .+.++||||-..- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999998533 2222233333344455666774 5679999994321 111223347
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 031411 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNK 129 (160)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K 129 (160)
.+|++++|+|..++.. +.....+..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999876321 23333444442 47899999998
No 217
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.6e-15 Score=114.14 Aligned_cols=135 Identities=22% Similarity=0.170 Sum_probs=95.1
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccc--------hh
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TA 83 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~ 83 (160)
..-++++++|.||+|||||+|.|.+.+.. .+..+.++.+.-...+..+| +.+.+.||.|........ ..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 34589999999999999999999976543 55666677777777788888 789999999976544433 24
Q ss_pred hccCCcEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEEee
Q 031411 84 YYRGAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVILK 159 (160)
Q Consensus 84 ~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~k 159 (160)
.++.+|.+++++|.+.+ +..+...-+ ....+.|+++|.||.||..+...... ++.....+..+|+|
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~------~~~~~~~~i~v~NK~DL~~~~~~~~~----~~~~~~~~i~iSa~ 359 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLALIE------LLPKKKPIIVVLNKADLVSKIELESE----KLANGDAIISISAK 359 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHHHH------hcccCCCEEEEEechhcccccccchh----hccCCCceEEEEec
Confidence 57889999999999985 222222111 33457899999999999744332111 33444445666554
No 218
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.1e-15 Score=110.30 Aligned_cols=119 Identities=19% Similarity=0.230 Sum_probs=88.5
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCc--c------cccccch
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ--E------RFRTITT 82 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--~------~~~~~~~ 82 (160)
-.+...+|+|+|.||||||||++++++.+......+.++-..+..++...+ .+++++||||- . ..+.+..
T Consensus 164 Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi 241 (346)
T COG1084 164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAI 241 (346)
T ss_pred CCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHH
Confidence 344567999999999999999999999887766666666566666666666 57899999993 1 1122223
Q ss_pred hhccC-CcEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 83 AYYRG-AMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 83 ~~~~~-~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
..++. .++++|+||.+.. -+.+.....+.++..... .|+++|+||.|..
T Consensus 242 ~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~ 293 (346)
T COG1084 242 LALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIA 293 (346)
T ss_pred HHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEeccccc
Confidence 33443 5788899999863 456777778888877655 7999999999986
No 219
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.67 E-value=6.8e-16 Score=111.73 Aligned_cols=113 Identities=23% Similarity=0.338 Sum_probs=77.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCc------------------cccceeeeEEEEEEEECCEEEEEEEecCCCccccc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTS------------------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (160)
+|+++|.+|+|||||+++|+....... .....++......+.+++ ..+++|||||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 589999999999999999974321100 011122223333444555 678999999998877
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
..+...+..+|++++|+|+++.........| ..+. ..++|+++++||+|+...
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~---~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFAD---EAGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCccCCC
Confidence 7778889999999999999876544333222 2222 236899999999999743
No 220
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.67 E-value=1e-15 Score=102.62 Aligned_cols=108 Identities=20% Similarity=0.321 Sum_probs=70.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccc----------ccccchhhcc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITTAYYR 86 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~ 86 (160)
.|+++|.+|+|||||++.+.++.+.....++.+..........++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 379999999999999999996555444444443333333333333 789999999432 2333333333
Q ss_pred ---CCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 87 ---GAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 87 ---~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
..+++++++|..... ....+.+|+... +.|+++++||+|+.
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~ 123 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKL 123 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcC
Confidence 457888999987652 223344454332 57999999999985
No 221
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.67 E-value=1e-15 Score=120.78 Aligned_cols=113 Identities=20% Similarity=0.221 Sum_probs=76.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCcccc----ceeeeEEEEEEE--ECCEE-----E-----EEEEecCCCcccc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT----TIGIDFKIRTIE--LDGKR-----I-----KLQIWDTAGQERF 77 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~~~~~D~~g~~~~ 77 (160)
+...|+++|..++|||||+++|.+......... +.+..+...... ..+.. . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 445899999999999999999986543322221 222111111000 00111 1 2689999999999
Q ss_pred cccchhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 78 RTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
..++...+..+|++++|+|+++ +.+++.+.. +.. .++|+++++||+|+.
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~ 136 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCc
Confidence 9888888899999999999987 555555432 221 378999999999985
No 222
>PRK13351 elongation factor G; Reviewed
Probab=99.65 E-value=1.4e-15 Score=122.73 Aligned_cols=128 Identities=17% Similarity=0.163 Sum_probs=88.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-------------C-----ccccceeeeEEEEEEEECCEEEEEEEecCCCcc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-------------T-----SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~-------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 75 (160)
...+|+++|..++|||||+++|+..... . +.....++......+.+++ ..+.+|||||+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~ 84 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPGHI 84 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCCcH
Confidence 4579999999999999999999852110 0 0011122222233444444 689999999999
Q ss_pred cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHH
Q 031411 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETI 147 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~ 147 (160)
++...+..+++.+|++++|+|+++....+....| ..+.. .++|+++++||+|+.........+++++.
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~~~~~~~~~~i~~~ 152 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVGADLFKVLEDIEER 152 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 8888888899999999999999887665544333 22322 37899999999999754444444444443
No 223
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.64 E-value=3.5e-15 Score=116.55 Aligned_cols=118 Identities=16% Similarity=0.119 Sum_probs=80.1
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCC----------------------CccccceeeeEEEEEEEECCEEEEEEEec
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT----------------------TSFITTIGIDFKIRTIELDGKRIKLQIWD 70 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 70 (160)
..+.+|+++|..++|||||.++|+..... .+.....++......+.+++ +.+++||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~--~~inliD 85 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD--CLINLLD 85 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC--EEEEEEE
Confidence 45679999999999999999999731100 00111112222233344444 7899999
Q ss_pred CCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 031411 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136 (160)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~ 136 (160)
|||+..+.......+..+|++++|+|+++.... ...+++.... ..++|+++++||+|+....
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~---~~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR---LRDTPIFTFINKLDRDGRE 147 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH---hcCCCEEEEEECCcccccC
Confidence 999998887777788999999999999874322 2233333332 2478999999999987443
No 224
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.64 E-value=2.9e-15 Score=116.98 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=83.5
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhc-CCCCCc-------------------cccceeeeEEEEEEEECCEEEEEEEecC
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSD-GSFTTS-------------------FITTIGIDFKIRTIELDGKRIKLQIWDT 71 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~-~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 71 (160)
..+..+|+++|..++|||||+++|+. ...... .....++........++...+.+.+|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 34567999999999999999999863 111100 0011122233333333333478999999
Q ss_pred CCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHH
Q 031411 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETI 147 (160)
Q Consensus 72 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~ 147 (160)
||+..+.......+..+|++++|+|+.+... .....++..... .++|+++++||+|+.........+++++.
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~~~~~~ll~~i~~~ 159 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDIRDPLELLDEVENE 159 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccCCCHHHHHHHHHHH
Confidence 9998887766677899999999999986411 122333333322 47899999999999643322233444443
No 225
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.64 E-value=6e-15 Score=105.96 Aligned_cols=140 Identities=21% Similarity=0.269 Sum_probs=99.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccccccc-------chhhccC
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TTAYYRG 87 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~~~ 87 (160)
...+.++|.|++|||||++.|.+.+........+++.+....+.+++.. ++.+-|+||.-+-..+ .-..+++
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHh
Confidence 3567899999999999999999877655555555565665666665543 5999999994322211 1234678
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcc---eEEEEee
Q 031411 88 AMGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKREAPFCLHETILLTVQ---VHLVILK 159 (160)
Q Consensus 88 ~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~k 159 (160)
++.+++|+|++.+ +.++.+.....++..+.. .+.|.++|+||+|+++.+. ....++++... +..++||
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~----~~l~~L~~~lq~~~V~pvsA~ 350 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK----NLLSSLAKRLQNPHVVPVSAK 350 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH----HHHHHHHHHcCCCcEEEeeec
Confidence 9999999999998 888888887777766543 4679999999999962221 22355555554 6777775
No 226
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.64 E-value=4.7e-15 Score=112.67 Aligned_cols=137 Identities=19% Similarity=0.133 Sum_probs=85.7
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcC----------------CCCCccccceeeeEEEEEEEECCEEEEEEEecCCC
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDG----------------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 73 (160)
...+..++|+++|..++|||||+++|+.. ....+..+..+.+. ....+.....++.+||+||
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpG 84 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPG 84 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCc
Confidence 34566799999999999999999999732 01122223333333 3344443446789999999
Q ss_pred cccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCcc--CCChhHHHHHhhh
Q 031411 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI-LVGNKADMDESKR--EAPFCLHETILLT 150 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~-vv~~K~Dl~~~~~--~~~~~~~~~~~~~ 150 (160)
+++|..........+|++++|+|+.+....+. .+.+..+.. .++|.+ +++||+|+.+... +...++++++...
T Consensus 85 h~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~ 160 (394)
T TIGR00485 85 HADYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred hHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 98876655556678899999999986322221 122222222 256655 6799999964322 1122356666665
Q ss_pred cc
Q 031411 151 VQ 152 (160)
Q Consensus 151 ~~ 152 (160)
++
T Consensus 161 ~~ 162 (394)
T TIGR00485 161 YD 162 (394)
T ss_pred cC
Confidence 54
No 227
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.63 E-value=5.3e-15 Score=117.39 Aligned_cols=135 Identities=17% Similarity=0.129 Sum_probs=86.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC---CCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG---SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
-|.++|..++|||||+++|.+. .+.++.....+++.....+...+. ..+.+||+|||++|.......+.++|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 4789999999999999999863 334444445554444333333221 358999999999887766777889999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcc-CCChhHHHHHhhhc-----ceEEEEee
Q 031411 94 VYDVTD---ESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKR-EAPFCLHETILLTV-----QVHLVILK 159 (160)
Q Consensus 94 v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p-i~vv~~K~Dl~~~~~-~~~~~~~~~~~~~~-----~~~~~~~k 159 (160)
|+|+.+ +.+.+.+ ..+.. .++| ++|++||+|+.++.. ....++++++.... .+..+|++
T Consensus 81 VVda~eg~~~qT~ehl----~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~ 149 (614)
T PRK10512 81 VVACDDGVMAQTREHL----AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAAT 149 (614)
T ss_pred EEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCC
Confidence 999986 3333332 11221 1445 578999999964322 12234555555443 34555653
No 228
>PRK12735 elongation factor Tu; Reviewed
Probab=99.63 E-value=5.9e-15 Score=112.14 Aligned_cols=136 Identities=18% Similarity=0.120 Sum_probs=84.2
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcC-------C---------CCCccccceeeeEEEEEEEECCEEEEEEEecCCC
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDG-------S---------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~-------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 73 (160)
...+..++|+++|..++|||||+++|+.. . ...+.....+.+. ....+.....++.|+||||
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPG 84 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPG 84 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCC
Confidence 34566799999999999999999999852 0 0111223333333 2333333335789999999
Q ss_pred cccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCcc--CCChhHHHHHhhh
Q 031411 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI-LVGNKADMDESKR--EAPFCLHETILLT 150 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~-vv~~K~Dl~~~~~--~~~~~~~~~~~~~ 150 (160)
+.+|.......+..+|++++|+|+.+... ....+.+..+. ..++|.+ ++.||+|+.++.. +...+++.++...
T Consensus 85 h~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~---~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~ 160 (396)
T PRK12735 85 HADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLAR---QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHH---HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 98776656667788999999999986322 12222232222 2367755 5799999963221 1122345555554
Q ss_pred c
Q 031411 151 V 151 (160)
Q Consensus 151 ~ 151 (160)
+
T Consensus 161 ~ 161 (396)
T PRK12735 161 Y 161 (396)
T ss_pred c
Confidence 3
No 229
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.63 E-value=6.1e-15 Score=102.17 Aligned_cols=111 Identities=14% Similarity=0.206 Sum_probs=66.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceee-eEEE--EEEEECCEEEEEEEecCCCcccccccch-----hhcc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGI-DFKI--RTIELDGKRIKLQIWDTAGQERFRTITT-----AYYR 86 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~D~~g~~~~~~~~~-----~~~~ 86 (160)
++||+++|.+|+|||||+|.|.+...........+. .... ..+...+ ...+.+||+||......... ..+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 378999999999999999999986543221111111 1110 1111111 23689999999653322222 2356
Q ss_pred CCcEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 87 GAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
++|+++++.+. . +... ..|+..+... +.|+++|+||+|+.
T Consensus 80 ~~d~~l~v~~~-~---~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~ 120 (197)
T cd04104 80 EYDFFIIISST-R---FSSNDVKLAKAIQCM---GKKFYFVRTKVDRD 120 (197)
T ss_pred CcCEEEEEeCC-C---CCHHHHHHHHHHHHh---CCCEEEEEecccch
Confidence 78998887432 2 2222 2344444443 56999999999983
No 230
>PRK12736 elongation factor Tu; Reviewed
Probab=99.63 E-value=6.4e-15 Score=111.89 Aligned_cols=135 Identities=17% Similarity=0.103 Sum_probs=84.1
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCC----------------CCccccceeeeEEEEEEEECCEEEEEEEecCCCcc
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 75 (160)
.+..++|+++|..++|||||+++|++... ..+..+..+.+. ....+......+.++|+||+.
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHH
Confidence 45679999999999999999999985211 111233333333 333443334578999999998
Q ss_pred cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCccCC--ChhHHHHHhhhcc
Q 031411 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKREA--PFCLHETILLTVQ 152 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-i~vv~~K~Dl~~~~~~~--~~~~~~~~~~~~~ 152 (160)
+|.......+..+|++++|+|+.+...-. ..+.+..+.. .++| ++++.||+|+.+..... ..+++.++.+..+
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 87665666678899999999997632211 1222222322 2677 67889999986322211 1234555554443
No 231
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.63 E-value=7.4e-15 Score=118.48 Aligned_cols=117 Identities=19% Similarity=0.118 Sum_probs=82.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC------------------CccccceeeeEEEEEEEECCEEEEEEEecCCCcc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 75 (160)
...+|+++|..++|||||+++|+..... .+.....+++.....+.+++ .++.+|||||+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~~ 86 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGHV 86 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCCc
Confidence 4569999999999999999999742110 01122333444445555555 689999999998
Q ss_pred cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 031411 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~ 136 (160)
.+...+...+..+|++++|+|+.+....+.. .++..+.. .++|+++++||+|+....
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCCC
Confidence 8877788889999999999999875444332 22233322 368999999999997433
No 232
>PLN03126 Elongation factor Tu; Provisional
Probab=99.62 E-value=9.7e-15 Score=112.81 Aligned_cols=118 Identities=17% Similarity=0.097 Sum_probs=80.6
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCC----------------CCCccccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGS----------------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
..+..++|+++|..++|||||+++|+... ..++.....+++.....+..++ .++.++|+|||
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh 154 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGH 154 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCH
Confidence 35667999999999999999999998511 1222333333333333333344 57899999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 031411 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDE 134 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-i~vv~~K~Dl~~ 134 (160)
.+|-......+..+|++++|+|+.+...- ...+++..+.. .++| ++++.||+|+.+
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~---~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQ---VGVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCeEEEEEecccccC
Confidence 98877667777899999999999864322 22333333332 2677 778899999964
No 233
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.62 E-value=4.5e-15 Score=113.17 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=84.8
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCC---CCCccccceeeeEEEEEEEE------------------C--C----E
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRTIEL------------------D--G----K 62 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~------------------~--~----~ 62 (160)
..++..++|+++|..++|||||+..|.+.. ...+..+..++........+ + + .
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 345567999999999999999999996531 12222222332221111110 0 1 1
Q ss_pred EEEEEEecCCCcccccccchhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccC-CC
Q 031411 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRE-AP 140 (160)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~-~~ 140 (160)
...+.+||+||+..+..........+|++++|+|++++. .-+... .+..+.. . ...|+++++||+|+.+.... ..
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l~~-~-~i~~iiVVlNK~Dl~~~~~~~~~ 160 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMALDI-I-GIKNIVIVQNKIDLVSKERALEN 160 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHHHH-c-CCCcEEEEEEeeccccchhHHHH
Confidence 257899999999877655455556789999999998642 111111 1112211 1 12368999999999643221 12
Q ss_pred hhHHHHHhhh-----cceEEEEee
Q 031411 141 FCLHETILLT-----VQVHLVILK 159 (160)
Q Consensus 141 ~~~~~~~~~~-----~~~~~~~~k 159 (160)
.++++++... ..+..+|++
T Consensus 161 ~~~i~~~l~~~~~~~~~ii~vSA~ 184 (411)
T PRK04000 161 YEQIKEFVKGTVAENAPIIPVSAL 184 (411)
T ss_pred HHHHHHHhccccCCCCeEEEEECC
Confidence 3455555543 234555654
No 234
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.62 E-value=2e-15 Score=113.35 Aligned_cols=110 Identities=25% Similarity=0.198 Sum_probs=80.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCccccc---------ccchhhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAYY 85 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~ 85 (160)
..|+++|.||+|||||+|+|.+.... .+..+.++.+.......+.+ ..|.+.||+|-+... .+....+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999986543 44566666677777777777 359999999955322 2334567
Q ss_pred cCCcEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 86 RGAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 86 ~~~~~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
..+|+++||+|....-+ -+.+.+|+. ..+.|+++++||+|-.
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr------~~~kpviLvvNK~D~~ 125 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILR------RSKKPVILVVNKIDNL 125 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHH------hcCCCEEEEEEcccCc
Confidence 88999999999976322 233333333 2368999999999964
No 235
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.61 E-value=3.7e-15 Score=113.59 Aligned_cols=135 Identities=14% Similarity=0.131 Sum_probs=80.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC---CccccceeeeEEEEE--------------EEE----CC------EEEEE
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRT--------------IEL----DG------KRIKL 66 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~--------------~~~----~~------~~~~~ 66 (160)
..++|+++|..++|||||++.|.+.... ++..+..+....... ++. ++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 4689999999999999999999753221 121111111111000 001 11 13578
Q ss_pred EEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-CCChhHHH
Q 031411 67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-EAPFCLHE 145 (160)
Q Consensus 67 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~-~~~~~~~~ 145 (160)
.+||+||+++|...+......+|++++|+|+++........+.+..+.. .. ..|+++++||+|+.+... ....+++.
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~g-i~~iIVvvNK~Dl~~~~~~~~~~~~i~ 160 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IG-IKNIVIVQNKIDLVSKEKALENYEEIK 160 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cC-CCeEEEEEEccccCCHHHHHHHHHHHH
Confidence 9999999998887777777889999999999864311122222222221 11 347899999999964322 12234555
Q ss_pred HHhhh
Q 031411 146 TILLT 150 (160)
Q Consensus 146 ~~~~~ 150 (160)
++...
T Consensus 161 ~~l~~ 165 (406)
T TIGR03680 161 EFVKG 165 (406)
T ss_pred hhhhh
Confidence 55543
No 236
>CHL00071 tufA elongation factor Tu
Probab=99.61 E-value=1.3e-14 Score=110.68 Aligned_cols=135 Identities=16% Similarity=0.098 Sum_probs=84.9
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCC----------------CCccccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
..+..++|+++|..++|||||+++|++... ..+..+..+.+... ..+.....++.+.|+||+
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~--~~~~~~~~~~~~iDtPGh 85 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAH--VEYETENRHYAHVDCPGH 85 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccE--EEEccCCeEEEEEECCCh
Confidence 355679999999999999999999986311 11222333333322 233323357889999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcc--CCChhHHHHHhhhc
Q 031411 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKR--EAPFCLHETILLTV 151 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-i~vv~~K~Dl~~~~~--~~~~~~~~~~~~~~ 151 (160)
..+.......+..+|++++|+|+..... ....+.+..+.. .++| ++++.||+|+.+... +...+++.++.+..
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~ 161 (409)
T CHL00071 86 ADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKY 161 (409)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 8776666677889999999999976422 222222222222 3678 778899999964322 11123455555443
No 237
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=7.8e-16 Score=98.55 Aligned_cols=118 Identities=25% Similarity=0.485 Sum_probs=94.9
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
+...+++++|-.|+||||++.++.-++... ..|+.+ ++...+.+.+ ..+++||+.|+-.....|+.++.+.|.+|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvt-tkPtig--fnve~v~yKN--Lk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIG--FNVETVPYKN--LKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCC--cCcccccccc--ccceeeEccCcccccHHHHHHhcccceEE
Confidence 467899999999999999999999776543 345555 4445555544 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCC
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDES 135 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~ 135 (160)
+|+|.++.+.+-.....+..+.+... .+..++|++||.|.+..
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh
Confidence 99999999888777776666655332 46788999999998643
No 238
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=1.3e-14 Score=98.58 Aligned_cols=115 Identities=23% Similarity=0.320 Sum_probs=79.1
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCC----------ccccccc
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTI 80 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~ 80 (160)
+.+...-|+++|.+|+|||||||.|++.+.-.....+.|.+.....+.+++ .+.+.|.|| ++.|..+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHH
Confidence 344557899999999999999999999764333333444444445566666 378999999 3456666
Q ss_pred chhhcc---CCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 81 TTAYYR---GAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 81 ~~~~~~---~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
...+++ +..++++++|+..+..-. .+-+|+.+ .++|++|++||+|..+
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~------~~i~~~vv~tK~DKi~ 149 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE------LGIPVIVVLTKADKLK 149 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH------cCCCeEEEEEccccCC
Confidence 666664 356888999997653322 22223322 3889999999999863
No 239
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.59 E-value=4.7e-15 Score=113.95 Aligned_cols=135 Identities=19% Similarity=0.123 Sum_probs=87.8
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCccccceeeeEEEEEEEEC
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIELD 60 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 60 (160)
.+..++|+++|..++|||||+.+|+...- .++.....+++. ....+.
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~--~~~~~~ 81 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDI--ALWKFE 81 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEE--EEEEec
Confidence 34568999999999999999998874110 111222233333 233344
Q ss_pred CEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHH-------HHHHHHHHHHHhcCCCC-cEEEEEeCCCC
Q 031411 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN-------NIRNWIRNIEQHASDNV-NKILVGNKADM 132 (160)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~-pi~vv~~K~Dl 132 (160)
.....+++.|+|||.+|.......+..+|++++|+|+.+ ..|+ ...+.+..+. ..++ ++++++||+|+
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~---~~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAF---TLGVKQMICCCNKMDA 157 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHH---HcCCCcEEEEEEcccC
Confidence 444689999999999998888888999999999999986 3333 2222221111 2356 57888999998
Q ss_pred CCCcc-----CCChhHHHHHhhhcc
Q 031411 133 DESKR-----EAPFCLHETILLTVQ 152 (160)
Q Consensus 133 ~~~~~-----~~~~~~~~~~~~~~~ 152 (160)
.+... ....++++.++++.+
T Consensus 158 ~~~~~~~~~~~~i~~ei~~~l~~~g 182 (447)
T PLN00043 158 TTPKYSKARYDEIVKEVSSYLKKVG 182 (447)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHcC
Confidence 52111 123456777777655
No 240
>COG2262 HflX GTPases [General function prediction only]
Probab=99.59 E-value=4.7e-14 Score=104.68 Aligned_cols=124 Identities=22% Similarity=0.230 Sum_probs=92.7
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCc-ccc-cccch----
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ-ERF-RTITT---- 82 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-~~~-~~~~~---- 82 (160)
.+.......|.++|-+|+|||||+|.|.+...........+++.+...+...+ ...+.+-||.|= ... ..+..
T Consensus 186 ~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks 264 (411)
T COG2262 186 KRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS 264 (411)
T ss_pred hhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH
Confidence 34445668999999999999999999998776666677777888888888875 247889999991 111 11111
Q ss_pred --hhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 83 --AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 83 --~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
.....+|+++.|+|+++|...+.+..-...+......+.|++++.||.|+.
T Consensus 265 TLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~ 317 (411)
T COG2262 265 TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLL 317 (411)
T ss_pred HHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccccc
Confidence 124579999999999999776666655555555544578999999999975
No 241
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.58 E-value=3.2e-14 Score=110.13 Aligned_cols=118 Identities=20% Similarity=0.163 Sum_probs=75.4
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCC--C-------------------------------ccccceeeeEEEEEEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT--T-------------------------------SFITTIGIDFKIRTIE 58 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~--~-------------------------------~~~~~~~~~~~~~~~~ 58 (160)
.+..++|+++|..++|||||+++|+...-. . +.....+++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 456699999999999999999999743211 0 0111122333333333
Q ss_pred ECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 59 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.++ .++.|+||||+..+.......+..+|++++|+|+.....-.....+. .+... . ..|++++.||+|+.+
T Consensus 104 ~~~--~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~l-g-~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 104 TEK--RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLL-G-IKHLVVAVNKMDLVD 174 (474)
T ss_pred cCC--cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHh-C-CCceEEEEEeecccc
Confidence 333 57899999999888665556679999999999997642211111111 11111 1 237899999999963
No 242
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.57 E-value=2.7e-14 Score=115.63 Aligned_cols=129 Identities=18% Similarity=0.138 Sum_probs=83.2
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcC---------------CCCC-ccccceeee--EEEEEEEECCEEEEEEEecCCC
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDG---------------SFTT-SFITTIGID--FKIRTIELDGKRIKLQIWDTAG 73 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~---------------~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~g 73 (160)
.+...||+++|..++|||||+++|+.. .+.. +..+..++. .....+..++..+.+.+|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 345679999999999999999999742 1111 111111211 1112223455568999999999
Q ss_pred cccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHH
Q 031411 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLH 144 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~ 144 (160)
+..+.......+..+|++++|+|+.+....+...-|. ... ..++|+++++||+|..........+++
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~---~~~~p~ivviNKiD~~~~~~~~~~~~~ 162 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QAL---KENVKPVLFINKVDRLINELKLTPQEL 162 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHH---HcCCCEEEEEEChhcccchhcCCHHHH
Confidence 9988877788899999999999997643222222122 111 236788999999998644333333333
No 243
>PRK12739 elongation factor G; Reviewed
Probab=99.57 E-value=5.3e-14 Score=113.57 Aligned_cols=118 Identities=19% Similarity=0.131 Sum_probs=82.8
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCC------------------CCccccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
+...+|+++|..++|||||+++|+.... ..+..+..+++.....+.+++ .++.++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence 3567999999999999999999974211 011233344444445555555 67899999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 031411 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~ 136 (160)
..+...+...+..+|++++|+|+.+....+.. ..+..+. ..++|++++.||+|+.+..
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~---~~~~p~iv~iNK~D~~~~~ 141 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQAD---KYGVPRIVFVNKMDRIGAD 141 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECCCCCCCC
Confidence 88777788889999999999999875332221 2222222 2468999999999997433
No 244
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=2.7e-14 Score=108.99 Aligned_cols=135 Identities=19% Similarity=0.161 Sum_probs=98.1
Q ss_pred CCCCCCCCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccc
Q 031411 2 AAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 81 (160)
Q Consensus 2 ~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 81 (160)
++|++.+..-.++..-|.++|.-..|||||+..|-+...........+-+.....++.... -.++|.|||||..|..|+
T Consensus 140 ~~~~a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMR 218 (683)
T KOG1145|consen 140 PQPEADPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMR 218 (683)
T ss_pred cCCccCHhhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHH
Confidence 4566666666667788999999999999999999887655444444444444444444422 578999999999999999
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCCh
Q 031411 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPF 141 (160)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~ 141 (160)
...-.-+|++++|+.+.|.-. .+....+......++|++|..||+|.++...+...
T Consensus 219 aRGA~vtDIvVLVVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~ 274 (683)
T KOG1145|consen 219 ARGANVTDIVVLVVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVK 274 (683)
T ss_pred hccCccccEEEEEEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHH
Confidence 998899999999999987422 22223344444568999999999999855544333
No 245
>PRK00049 elongation factor Tu; Reviewed
Probab=99.56 E-value=8.8e-14 Score=105.74 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=78.8
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCC----------------CCccccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
.....++|+++|..++|||||+++|+.... ..+..+..+.+.. ...+.....++.+.||||+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~ 85 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEYETEKRHYAHVDCPGH 85 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEEcCCCeEEEEEECCCH
Confidence 445679999999999999999999986211 1122333333333 3333333357899999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCC
Q 031411 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKI-LVGNKADMDE 134 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~-vv~~K~Dl~~ 134 (160)
.++.......+..+|++++++|+.+... ....+.+..+.. .++|.+ ++.||+|+.+
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcc
Confidence 8776666667889999999999976422 222223333322 267876 5799999963
No 246
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.56 E-value=2.1e-13 Score=102.60 Aligned_cols=116 Identities=30% Similarity=0.278 Sum_probs=83.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCccc----------ccccc-
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTIT- 81 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~- 81 (160)
..+||+++|.|++|||||+|+|++.... .+..+.++.+.-...+..+++ ++.+.||.|..+ |....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence 5799999999999999999999986543 445556666677777788884 688999999432 22211
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
...+..+|++++++|++.+-+-+.. +....+. ..+.+++++.||.|+.+.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~---~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL-RIAGLIE---EAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH-HHHHHHH---HcCCCeEEEEEccccCCc
Confidence 2346789999999999886554332 2222222 247799999999998643
No 247
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.6e-14 Score=98.44 Aligned_cols=115 Identities=22% Similarity=0.358 Sum_probs=82.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhcc---CCcEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR---GAMGIL 92 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~~~~i 92 (160)
-.|+++|+.+||||+|+..|..+.+.....+ ++.+...+..... ...++|.|||.+.......++. .+-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 3799999999999999999998865544333 3344455555443 3789999999998887777777 789999
Q ss_pred EEEECCC-hhhHHHHHHHHHHH-HHh--cCCCCcEEEEEeCCCCCCC
Q 031411 93 LVYDVTD-ESSFNNIRNWIRNI-EQH--ASDNVNKILVGNKADMDES 135 (160)
Q Consensus 93 ~v~d~~~-~~~~~~~~~~~~~~-~~~--~~~~~pi~vv~~K~Dl~~~ 135 (160)
||+|+.- ......+.+++-.+ ... ....+|+++++||.|+.-.
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 9999864 22233444444444 333 3567899999999998633
No 248
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.55 E-value=4.7e-14 Score=107.52 Aligned_cols=114 Identities=23% Similarity=0.202 Sum_probs=73.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC---------------------------------CccccceeeeEEEEEEEECCE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFT---------------------------------TSFITTIGIDFKIRTIELDGK 62 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~ 62 (160)
+||+++|..++|||||+++|+..... ++.....+++.....+..++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 58999999999999999999732111 11112222333333444444
Q ss_pred EEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.++.++|+||+.+|.......+..+|++++|+|+.....-+....|. +..... ..+++++.||+|+.+
T Consensus 80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~--~~~~~~-~~~iivviNK~D~~~ 147 (406)
T TIGR02034 80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY--IASLLG-IRHVVLAVNKMDLVD 147 (406)
T ss_pred -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH--HHHHcC-CCcEEEEEEeccccc
Confidence 57899999999888665666788999999999997643211111111 111111 236889999999963
No 249
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.4e-13 Score=105.19 Aligned_cols=144 Identities=22% Similarity=0.178 Sum_probs=104.6
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCC---------------CCccccceeeeEEEEEEEE-CCEEEEEEEecCCCcc
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF---------------TTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQE 75 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~ 75 (160)
.++.-++.++-.-..|||||..+|+.... ..+..+..++......+.+ ++..+.++++|||||.
T Consensus 57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence 36678999999999999999999985221 1123444444333333333 4677899999999999
Q ss_pred cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhc--ce
Q 031411 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTV--QV 153 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~--~~ 153 (160)
.|.......+.-|+++++++|++..-.-+.+...+ .....++.++.|.||+|++....+....++.++.... .+
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~----lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~ 212 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFY----LAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEV 212 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHH----HHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccce
Confidence 99998888999999999999998754444443333 3334488899999999998666666666666665543 57
Q ss_pred EEEEee
Q 031411 154 HLVILK 159 (160)
Q Consensus 154 ~~~~~k 159 (160)
.++|||
T Consensus 213 i~vSAK 218 (650)
T KOG0462|consen 213 IYVSAK 218 (650)
T ss_pred EEEEec
Confidence 888887
No 250
>PLN03127 Elongation factor Tu; Provisional
Probab=99.54 E-value=1.4e-13 Score=105.79 Aligned_cols=118 Identities=17% Similarity=0.115 Sum_probs=77.4
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcC----------------CCCCccccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDG----------------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
.....++|+++|..++|||||+++|.+. ...++..+..+++.. ...+.....++.+.|+||+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~--~~~~~~~~~~i~~iDtPGh 134 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATA--HVEYETAKRHYAHVDCPGH 134 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeee--EEEEcCCCeEEEEEECCCc
Confidence 3456799999999999999999999621 111223344444443 3334333457899999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 031411 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDE 134 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-i~vv~~K~Dl~~ 134 (160)
.+|-......+..+|++++|+|+.+...- ...+.+..+.. .++| ++++.||+|+.+
T Consensus 135 ~~f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~---~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 135 ADYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ---VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred cchHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEeeccCC
Confidence 87766555566789999999999764221 11222222222 3678 567899999963
No 251
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.54 E-value=8.2e-14 Score=100.68 Aligned_cols=149 Identities=14% Similarity=0.267 Sum_probs=105.7
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECC--EEEEEEEecCCCcccccccchhhcc
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG--KRIKLQIWDTAGQERFRTITTAYYR 86 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~ 86 (160)
+..-+..-+|+++|+.++||||||.+|.+... .....++++....+..+. ...++.+|=+.|...+..+....+.
T Consensus 46 ~sklpsgk~VlvlGdn~sGKtsLi~klqg~e~---~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ 122 (473)
T KOG3905|consen 46 RSKLPSGKNVLVLGDNGSGKTSLISKLQGSET---VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALP 122 (473)
T ss_pred cccCCCCCeEEEEccCCCchhHHHHHhhcccc---cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccc
Confidence 33444556999999999999999999998762 233344555555544432 3468899999998777766655554
Q ss_pred CC----cEEEEEEECCCh-hhHHHHHHHHHHHHHhcCC------------------------------------------
Q 031411 87 GA----MGILLVYDVTDE-SSFNNIRNWIRNIEQHASD------------------------------------------ 119 (160)
Q Consensus 87 ~~----~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~------------------------------------------ 119 (160)
.. -++|++.|+++| .-++.+.+|...+.++..+
T Consensus 123 ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~ 202 (473)
T KOG3905|consen 123 ATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGS 202 (473)
T ss_pred ccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccC
Confidence 43 378889999998 5678888888776554321
Q ss_pred -------------------CCcEEEEEeCCCCC---C---Cc----cCCChhHHHHHhhhcceEEEEeeC
Q 031411 120 -------------------NVNKILVGNKADMD---E---SK----REAPFCLHETILLTVQVHLVILKV 160 (160)
Q Consensus 120 -------------------~~pi~vv~~K~Dl~---~---~~----~~~~~~~~~~~~~~~~~~~~~~k~ 160 (160)
++|++||+||+|.. + .+ -+.....+++||.++|+..++..|
T Consensus 203 ~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSv 272 (473)
T KOG3905|consen 203 SADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSV 272 (473)
T ss_pred ccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeec
Confidence 78999999999961 1 12 224445678999999988877654
No 252
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.54 E-value=5.5e-14 Score=112.54 Aligned_cols=118 Identities=20% Similarity=0.137 Sum_probs=74.6
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCc---------------------------------cccceeeeEEEEEEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS---------------------------------FITTIGIDFKIRTIE 58 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~ 58 (160)
.+..++|+++|.+++|||||+++|+....... .....+++.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 34558999999999999999999985321100 011112222223333
Q ss_pred ECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 59 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.++ .++.|+||||++.+.......+..+|++++|+|+.....-+. .+.+..+... . ..+++|+.||+|+.+
T Consensus 101 ~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~-~-~~~iivvvNK~D~~~ 171 (632)
T PRK05506 101 TPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLL-G-IRHVVLAVNKMDLVD 171 (632)
T ss_pred cCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh-C-CCeEEEEEEeccccc
Confidence 333 478899999998876555567889999999999975422111 1111112211 1 247889999999963
No 253
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.53 E-value=2.3e-13 Score=94.23 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=70.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCcc--ccceeeeEEEEEEEECCEEEEEEEecCCCcccccc--------c---ch
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF--ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------I---TT 82 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~---~~ 82 (160)
++|+++|.+|+|||||+|.|++....... .+..+..........++ .++.++||||-..... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999986543222 11222333333444555 4789999999443211 1 11
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCC
Q 031411 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKILVGNKADMD 133 (160)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~pi~vv~~K~Dl~ 133 (160)
....+.|++++|+++.+. + +.-...+..+.+.+.. -.+++++.|+.|..
T Consensus 79 ~~~~g~~~illVi~~~~~-t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l 129 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRF-T-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDL 129 (196)
T ss_pred hcCCCCEEEEEEEECCCc-C-HHHHHHHHHHHHHhChHhHhcEEEEEECcccc
Confidence 124678999999998762 2 1222333444433321 13788999999964
No 254
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.53 E-value=2.3e-13 Score=106.52 Aligned_cols=132 Identities=17% Similarity=0.183 Sum_probs=92.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccc------cchhhc--c
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--R 86 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~ 86 (160)
..+++++|+||+|||||+|++++........+..+.+.....+...++ ++.+.|+||-..... ..+.++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 357999999999999999999998877777888888877777777774 589999999543322 223333 3
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
+.|+++.++|+++.+.--.+. .+..+-+.|.+++.|+.|..++.. ...+.+++.+..|++.+
T Consensus 81 ~~D~ivnVvDAtnLeRnLylt------lQLlE~g~p~ilaLNm~D~A~~~G--i~ID~~~L~~~LGvPVv 142 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLT------LQLLELGIPMILALNMIDEAKKRG--IRIDIEKLSKLLGVPVV 142 (653)
T ss_pred CCCEEEEEcccchHHHHHHHH------HHHHHcCCCeEEEeccHhhHHhcC--CcccHHHHHHHhCCCEE
Confidence 579999999998755432222 222223889999999999853322 22335566666665443
No 255
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.53 E-value=2.4e-13 Score=104.61 Aligned_cols=117 Identities=21% Similarity=0.147 Sum_probs=77.1
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCC--C-----------------------------CCccccceeeeEEEEEEEEC
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS--F-----------------------------TTSFITTIGIDFKIRTIELD 60 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 60 (160)
....++|+++|..++|||||+.+|+... . .++.....+++.....+..+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 3556899999999999999999887511 0 11122333333333333333
Q ss_pred CEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChh---hH---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 031411 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SF---NNIRNWIRNIEQHASDNVN-KILVGNKADMD 133 (160)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~p-i~vv~~K~Dl~ 133 (160)
...+.++|+|||.+|.......+..+|++++|+|+.... .+ ....+-+..+. ..++| ++++.||+|..
T Consensus 84 --~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~---~~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 84 --KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAF---TLGVKQMIVCINKMDDK 158 (446)
T ss_pred --CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH---HcCCCeEEEEEEccccc
Confidence 468999999999998877778889999999999997632 11 11111111122 12555 67899999954
No 256
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.52 E-value=1.9e-13 Score=97.98 Aligned_cols=124 Identities=20% Similarity=0.193 Sum_probs=77.8
Q ss_pred CCCCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCc------ccc--
Q 031411 6 ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ------ERF-- 77 (160)
Q Consensus 6 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~------~~~-- 77 (160)
+|...+..+.++|+++|.||+|||||.|.+.+.+.........+.......+-.. ...++.|+||||- .++
T Consensus 63 srde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l 141 (379)
T KOG1423|consen 63 SRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHL 141 (379)
T ss_pred CCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHH
Confidence 3444566788999999999999999999999977654333322222222222222 2379999999992 111
Q ss_pred ----cccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 78 ----RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 78 ----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
.+-....+..+|++++++|+++.... --.+.+..+..+ .++|-+++.||.|..
T Consensus 142 ~~s~lq~~~~a~q~AD~vvVv~Das~tr~~-l~p~vl~~l~~y--s~ips~lvmnkid~~ 198 (379)
T KOG1423|consen 142 MMSVLQNPRDAAQNADCVVVVVDASATRTP-LHPRVLHMLEEY--SKIPSILVMNKIDKL 198 (379)
T ss_pred HHHhhhCHHHHHhhCCEEEEEEeccCCcCc-cChHHHHHHHHH--hcCCceeeccchhcc
Confidence 11123457789999999999852211 001122233222 267889999999954
No 257
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.51 E-value=6.7e-13 Score=95.89 Aligned_cols=99 Identities=20% Similarity=0.188 Sum_probs=72.5
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccc-------cccchhh
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------RTITTAY 84 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~ 84 (160)
.....+++++|.|++|||||++.|++..-.....+.++......-+.++| .++++.|+||.-.- ....-+.
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv 137 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSV 137 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeee
Confidence 34457999999999999999999999776655555555666666777777 78999999983211 1234566
Q ss_pred ccCCcEEEEEEECCChhh-HHHHHHHHHH
Q 031411 85 YRGAMGILLVYDVTDESS-FNNIRNWIRN 112 (160)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~-~~~~~~~~~~ 112 (160)
.+.||++++|+|...... .+.+.+.+..
T Consensus 138 ~R~ADlIiiVld~~~~~~~~~~i~~ELe~ 166 (365)
T COG1163 138 ARNADLIIIVLDVFEDPHHRDIIERELED 166 (365)
T ss_pred eccCCEEEEEEecCCChhHHHHHHHHHHh
Confidence 789999999999986554 5555444443
No 258
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.51 E-value=8.3e-13 Score=96.14 Aligned_cols=122 Identities=19% Similarity=0.173 Sum_probs=71.7
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccc-------
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT------- 81 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~------- 81 (160)
......++|+++|.+|+||||++|+|++.... .+...+.+..........++ .++.+|||||........
T Consensus 33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~i 110 (313)
T TIGR00991 33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNII 110 (313)
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHH
Confidence 34456799999999999999999999986532 11222222222223333454 679999999965332111
Q ss_pred hhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCC
Q 031411 82 TAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKILVGNKADMD 133 (160)
Q Consensus 82 ~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~pi~vv~~K~Dl~ 133 (160)
..++ ...|++++|.+.+.....+.-...+..+...+.. -.+.+|+.|+.|..
T Consensus 111 k~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 111 KRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 1111 2589999996654321111112233334333322 13789999999975
No 259
>PRK00007 elongation factor G; Reviewed
Probab=99.51 E-value=3.8e-13 Score=108.64 Aligned_cols=117 Identities=19% Similarity=0.145 Sum_probs=80.9
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhc--CCC----------------CCccccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSD--GSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
+...+|+++|..++|||||+++|+. +.. ..+..+..+++.....+.+++ .++++.||||+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence 4467999999999999999999973 110 011233344444445555555 68999999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
..+.......+..+|++++|+|+......+... .+..+.. .++|.+++.||+|+.+.
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~---~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK---YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH---cCCCEEEEEECCCCCCC
Confidence 877666677788999999999987653333322 2222222 36799999999999743
No 260
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.51 E-value=2.6e-13 Score=100.04 Aligned_cols=82 Identities=20% Similarity=0.256 Sum_probs=55.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEE---------------------ECC-EEEEEEEecCCCc-
Q 031411 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIE---------------------LDG-KRIKLQIWDTAGQ- 74 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~D~~g~- 74 (160)
|+++|.+++|||||++++++........+..+++....... .++ ..+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998765422222232222222111 122 3368999999997
Q ss_pred ---ccccccchh---hccCCcEEEEEEECCC
Q 031411 75 ---ERFRTITTA---YYRGAMGILLVYDVTD 99 (160)
Q Consensus 75 ---~~~~~~~~~---~~~~~~~~i~v~d~~~ 99 (160)
.+...+... .++++|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 344444444 4889999999999973
No 261
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.50 E-value=1.6e-13 Score=99.65 Aligned_cols=117 Identities=18% Similarity=0.166 Sum_probs=83.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccc----cccc---chhhccCC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTI---TTAYYRGA 88 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~---~~~~~~~~ 88 (160)
..|.++|.|++|||||++.+++.+......+.+++.++.-.+...+ .-.|++-|.||.=+ -..+ .-..++++
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 3467999999999999999998776655555566666555555532 24799999999311 1111 22346789
Q ss_pred cEEEEEEECCChh---hHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCC
Q 031411 89 MGILLVYDVTDES---SFNNIRNWIRNIEQHAS--DNVNKILVGNKADMD 133 (160)
Q Consensus 89 ~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~--~~~pi~vv~~K~Dl~ 133 (160)
.++++++|++..+ ..+.......++..+.+ .+.|.+|++||+|+.
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 9999999998644 36666666677766543 477999999999975
No 262
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.49 E-value=2.1e-12 Score=92.36 Aligned_cols=122 Identities=20% Similarity=0.232 Sum_probs=72.1
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCc-cccceeeeEEEEEEEECCEEEEEEEecCCCccccc--c-c-----
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--T-I----- 80 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--~-~----- 80 (160)
......++|+|+|.+|+|||||+|.|++...... .....+..........++ ..+.+|||||-.... . .
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHH
Confidence 4556679999999999999999999998654321 121222223333344455 578999999954331 0 0
Q ss_pred --chhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCC
Q 031411 81 --TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKILVGNKADMD 133 (160)
Q Consensus 81 --~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~pi~vv~~K~Dl~ 133 (160)
...++. ..|+++++..++....-..-...++.+......+ .+++++.||+|..
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 112232 5788888776654211111123333443332222 3799999999974
No 263
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.49 E-value=6.1e-13 Score=100.33 Aligned_cols=145 Identities=23% Similarity=0.225 Sum_probs=106.5
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCC---------------CCCccccceeeeEEEEEEEE---CCEEEEEEEecCC
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGS---------------FTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTA 72 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~ 72 (160)
+.++.-++.++..-..|||||..||+... ..-+..+..++......+.+ +|..+.+.++|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 34456689999999999999999997521 12224455555444444444 4578999999999
Q ss_pred CcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhh--h
Q 031411 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILL--T 150 (160)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~--~ 150 (160)
||..|.......+..|.++++++|+++.-.-+.+...+..+. .++-|+-|.||.||+..+.+...++++.... .
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~ 160 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDA 160 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCc
Confidence 999999888888999999999999998755555554444444 4788999999999997776666666666543 2
Q ss_pred cceEEEEee
Q 031411 151 VQVHLVILK 159 (160)
Q Consensus 151 ~~~~~~~~k 159 (160)
-++..+|||
T Consensus 161 ~dav~~SAK 169 (603)
T COG0481 161 SDAVLVSAK 169 (603)
T ss_pred chheeEecc
Confidence 356777776
No 264
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.48 E-value=6.3e-13 Score=85.03 Aligned_cols=105 Identities=24% Similarity=0.260 Sum_probs=77.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccc-cceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
+|++++|..|+|||+|+.++....+...+. ++.+ +..+.....+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999998777653332 2221 222334456788999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhh
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLT 150 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~ 150 (160)
++.....+++.+ |...+......++|+++++||.|+.+.. ....++...++..
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~-~~~~~~~~~~~~~ 106 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEER-QVATEEGLEFAET 106 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhC-cCCHHHHHHHHHH
Confidence 999999998776 8877766556678999999999985333 5555666666654
No 265
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.48 E-value=6.7e-13 Score=93.62 Aligned_cols=111 Identities=21% Similarity=0.232 Sum_probs=70.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccc-----------------------eeeeEE---------------EEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITT-----------------------IGIDFK---------------IRTIE 58 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~-----------------------~~~~~~---------------~~~~~ 58 (160)
||+++|+.++|||||++++..+.+....... .+++.. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999976554321100 000000 01111
Q ss_pred ECCEEEEEEEecCCCcccccccchhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 59 LDGKRIKLQIWDTAGQERFRTITTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 59 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
.++ ..+.+.|+||+.++.......+. .+|++++|+|+..... +...+++..+.. .++|++++.||+|+.
T Consensus 81 ~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~ 151 (224)
T cd04165 81 KSS--KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLA 151 (224)
T ss_pred eCC--cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECcccc
Confidence 222 47899999999887654444443 6899999999876432 222223333322 368999999999985
No 266
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=4.6e-13 Score=102.25 Aligned_cols=115 Identities=20% Similarity=0.211 Sum_probs=89.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECC-EEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.=|.++|.-..|||||+..+-............+-+.....+..+. ..-.++|.|||||+.|..++.....-+|+++++
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV 85 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV 85 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence 4689999999999999999998776655556666566666666652 224789999999999999999988999999999
Q ss_pred EECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 031411 95 YDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 137 (160)
Q Consensus 95 ~d~~~---~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~ 137 (160)
+++.+ |.+.+. +......++|++|..||+|.++...
T Consensus 86 Va~dDGv~pQTiEA-------I~hak~a~vP~iVAiNKiDk~~~np 124 (509)
T COG0532 86 VAADDGVMPQTIEA-------INHAKAAGVPIVVAINKIDKPEANP 124 (509)
T ss_pred EEccCCcchhHHHH-------HHHHHHCCCCEEEEEecccCCCCCH
Confidence 99987 333333 3333345899999999999984443
No 267
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.47 E-value=3.2e-13 Score=87.88 Aligned_cols=114 Identities=25% Similarity=0.266 Sum_probs=75.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccc----ccccchhhccCCcEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAYYRGAMGI 91 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~~~~~~~~ 91 (160)
-||+++|+.++|||||+++|.+.... +..|..+. +.+ .++||||..- +..-......++|++
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~-------~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V 67 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIE-------YYD-----NTIDTPGEYIENPRFYHALIVTAQDADVV 67 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC--cCccceeE-------ecc-----cEEECChhheeCHHHHHHHHHHHhhCCEE
Confidence 38999999999999999999986642 22222222 222 3589999532 222222334589999
Q ss_pred EEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcce
Q 031411 92 LLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQV 153 (160)
Q Consensus 92 i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (160)
+++.|++++.+ |.. .+... .+.|++=|.||+|+.. .+...+.++++.+..|+
T Consensus 68 ~ll~dat~~~~~~pP------~fa~~--f~~pvIGVITK~Dl~~--~~~~i~~a~~~L~~aG~ 120 (143)
T PF10662_consen 68 LLLQDATEPRSVFPP------GFASM--FNKPVIGVITKIDLPS--DDANIERAKKWLKNAGV 120 (143)
T ss_pred EEEecCCCCCccCCc------hhhcc--cCCCEEEEEECccCcc--chhhHHHHHHHHHHcCC
Confidence 99999998644 221 12222 2569999999999963 24466677777776665
No 268
>PRK12740 elongation factor G; Reviewed
Probab=99.46 E-value=6.3e-13 Score=107.20 Aligned_cols=109 Identities=25% Similarity=0.246 Sum_probs=76.2
Q ss_pred EcCCCCCHHHHHHHHhcCCCC------------------CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccch
Q 031411 21 IGDSGVGKSCLLLRFSDGSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT 82 (160)
Q Consensus 21 ~G~~~~GKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (160)
+|..++|||||+++|+...-. .+..+..++......+.+++ +.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 699999999999999532110 11123333344444555555 6899999999988777778
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
..+..+|++++++|++..........| ..+.. .++|+++++||+|+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCCCC
Confidence 889999999999999876554433222 22222 37899999999998743
No 269
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.44 E-value=1.2e-12 Score=107.57 Aligned_cols=119 Identities=19% Similarity=0.182 Sum_probs=81.0
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCC----------------CCccccceeeeEEEEEEEE--------------C
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIEL--------------D 60 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~--------------~ 60 (160)
..+...+|+++|..++|||||+++|+.... ..+.....++......+.+ +
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 445667999999999999999999974321 1111122222222222222 1
Q ss_pred CEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+..+.++++|||||..|.......+..+|++++|+|+...-......-|-. + ...++|++++.||+|+.
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~---~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-A---LGERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-H---HHCCCCEEEEEECCccc
Confidence 235678999999999998878888999999999999987544333222322 2 22478999999999985
No 270
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.43 E-value=1.7e-12 Score=94.24 Aligned_cols=116 Identities=21% Similarity=0.316 Sum_probs=68.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCc----------cccceeeeEEEEEEEECCEEEEEEEecCCCcc--------
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-------- 75 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-------- 75 (160)
..++|+|+|.+|+|||||||.|.+...... ...+..+......+.-++..+.+.++||||-.
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 368999999999999999999998544322 12233344444556667888999999999910
Q ss_pred ----------ccccc-------chhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 76 ----------RFRTI-------TTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 76 ----------~~~~~-------~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
++... .+..+ .+.|++++.++.+...--+.-.+.++.+. ..++++-|..|+|.-
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS----KRVNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT----TTSEEEEEESTGGGS
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc----ccccEEeEEeccccc
Confidence 00000 00111 25788998888764211111112333333 267899999999964
No 271
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.43 E-value=1.1e-12 Score=106.56 Aligned_cols=120 Identities=20% Similarity=0.181 Sum_probs=79.0
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCC----------------CccccceeeeEEEEEE--EECCEEEEEEEecCCC
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT----------------TSFITTIGIDFKIRTI--ELDGKRIKLQIWDTAG 73 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~g 73 (160)
.++..+|+++|..++|||||+++|+..... .+.....++......+ ..++..+.++++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 345668999999999999999999742211 0011111122221222 2344457899999999
Q ss_pred cccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
+..+.......+..+|++++|+|+......+...-|... .. .+.|.+++.||+|+...
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~-~~---~~~~~iv~iNK~D~~~~ 154 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQA-LR---ERVKPVLFINKVDRLIK 154 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHH-HH---cCCCeEEEEECchhhcc
Confidence 998887788889999999999998765333222223222 22 25678899999998533
No 272
>PTZ00416 elongation factor 2; Provisional
Probab=99.43 E-value=1.8e-12 Score=106.45 Aligned_cols=118 Identities=19% Similarity=0.185 Sum_probs=78.9
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCC----------------CccccceeeeEEEEEEEEC--------CEEEEEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFT----------------TSFITTIGIDFKIRTIELD--------GKRIKLQ 67 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 67 (160)
.+...+|+++|..++|||||+++|+..... .+.....++......+.+. ++.+.+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 345569999999999999999999852110 1111122222222222332 2246799
Q ss_pred EecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 68 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+.||||+..+.......+..+|++++|+|+.+.-..... ..+..+. ..++|++++.||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~---~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQAL---QERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHH---HcCCCEEEEEEChhhh
Confidence 999999998877778889999999999999875332222 2222232 2368999999999985
No 273
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.40 E-value=9.7e-12 Score=95.76 Aligned_cols=140 Identities=18% Similarity=0.243 Sum_probs=100.6
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
.+.....+++.++|+.++|||.|++.++++.+......+....+....+...+..-.+.+-|.+-. .... ....-..+
T Consensus 419 ~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~-l~~ke~~c 496 (625)
T KOG1707|consen 419 KQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDF-LTSKEAAC 496 (625)
T ss_pred ccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-cccc-ccCcccee
Confidence 456667899999999999999999999998777655555554555555666666666777777654 2222 22222789
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcce
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQV 153 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (160)
|+++++||.+++.+|+-+...+..-... ...|++++++|+|+.+...+..... .++|.++++
T Consensus 497 Dv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i 558 (625)
T KOG1707|consen 497 DVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGL 558 (625)
T ss_pred eeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCC
Confidence 9999999999999998776555433222 4789999999999975554444444 778877764
No 274
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.39 E-value=4.6e-12 Score=93.72 Aligned_cols=70 Identities=21% Similarity=0.316 Sum_probs=55.5
Q ss_pred EEEEEEecCCCcccccccchhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCC
Q 031411 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQHAS-DNVNKILVGNKAD 131 (160)
Q Consensus 63 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~D 131 (160)
.+.+.+||++|+......|..++.+++++++|+|.++. ..++.....+..+..... .+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 36889999999999999999999999999999999874 344444445555544322 5789999999999
Q ss_pred C
Q 031411 132 M 132 (160)
Q Consensus 132 l 132 (160)
+
T Consensus 240 ~ 240 (317)
T cd00066 240 L 240 (317)
T ss_pred H
Confidence 5
No 275
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.39 E-value=7.4e-12 Score=96.36 Aligned_cols=98 Identities=14% Similarity=0.367 Sum_probs=68.7
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEEC--CEEEEEEEecCCCcccccccchhhccC---
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRG--- 87 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~--- 87 (160)
...-+|+|+|..++|||||+.+|.+.. .+..+.+++|....+..+ +...++.+|.+.|...+..+..-.+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 344699999999999999999998754 344566677766655443 234578999998876666655444432
Q ss_pred -CcEEEEEEECCChhhH-HHHHHHHHHH
Q 031411 88 -AMGILLVYDVTDESSF-NNIRNWIRNI 113 (160)
Q Consensus 88 -~~~~i~v~d~~~~~~~-~~~~~~~~~~ 113 (160)
--++++|+|.+.|..+ +.+.+|+..+
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl 127 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVL 127 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHH
Confidence 3478899999998654 5666665554
No 276
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=2e-12 Score=97.89 Aligned_cols=121 Identities=25% Similarity=0.250 Sum_probs=84.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCccc-cccc--------chhh
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTI--------TTAY 84 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~--------~~~~ 84 (160)
-++|+++|+||+|||||+|.|.+.... .+..+.++.+.--..++++| +.+.+.||.|-.+ -... ....
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 389999999999999999999986654 55566666666666777888 7899999999654 1111 2345
Q ss_pred ccCCcEEEEEEEC--CChhhHHHHHHHHHHHHHh------cCCCCcEEEEEeCCCCCCCcc
Q 031411 85 YRGAMGILLVYDV--TDESSFNNIRNWIRNIEQH------ASDNVNKILVGNKADMDESKR 137 (160)
Q Consensus 85 ~~~~~~~i~v~d~--~~~~~~~~~~~~~~~~~~~------~~~~~pi~vv~~K~Dl~~~~~ 137 (160)
+..+|++++++|+ ++-++-..+.+.+.....- .....|++++.||+|+..+..
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~ 406 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP 406 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccc
Confidence 6789999999999 3333333434444444221 123468999999999865533
No 277
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=4.9e-12 Score=94.11 Aligned_cols=130 Identities=18% Similarity=0.140 Sum_probs=83.9
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCccccceeeeEEEEEEEE
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIEL 59 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 59 (160)
..+.+++++++|+.++|||||+-+|+...- .++..... ........+
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGv--Ti~~~~~~f 80 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGV--TIDVAHSKF 80 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcce--EEEEEEEEe
Confidence 345679999999999999999999874211 11122222 233334444
Q ss_pred CCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChh---hHHHHHHHHH--HHHHhcCCCCcEEEEEeCCCCCC
Q 031411 60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWIR--NIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~--~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
....+.|++.|+|||..|-.........+|+.|+|+|+.+.+ .|..-.+... -+.+... --.++|+.||+|+.+
T Consensus 81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~ 159 (428)
T COG5256 81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVS 159 (428)
T ss_pred ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccc
Confidence 444578999999999888777777788999999999998753 1211111111 1222222 336788899999984
Q ss_pred CccCCChhHH
Q 031411 135 SKREAPFCLH 144 (160)
Q Consensus 135 ~~~~~~~~~~ 144 (160)
..+..++++
T Consensus 160 -wde~rf~ei 168 (428)
T COG5256 160 -WDEERFEEI 168 (428)
T ss_pred -cCHHHHHHH
Confidence 555555554
No 278
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.37 E-value=9.7e-12 Score=87.13 Aligned_cols=114 Identities=22% Similarity=0.246 Sum_probs=65.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccc--cceeeeEEEEEEEECCEEEEEEEecCCCccccc--------ccc---h
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFI--TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TIT---T 82 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~---~ 82 (160)
++|+|+|.+|+||||++|.|++........ ...+..........++ ..+.++||||-.... .+. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999876544321 2222334444556677 568999999932111 111 1
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCC
Q 031411 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKILVGNKADMD 133 (160)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~pi~vv~~K~Dl~ 133 (160)
....+.|++++|++...... .-...+..+...++.. ..++|+.|..|..
T Consensus 79 ~~~~g~ha~llVi~~~r~t~--~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~ 129 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTE--EDREVLELLQEIFGEEIWKHTIVVFTHADEL 129 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SH--HHHHHHHHHHHHHCGGGGGGEEEEEEEGGGG
T ss_pred hccCCCeEEEEEEecCcchH--HHHHHHHHHHHHccHHHHhHhhHHhhhcccc
Confidence 12457899999999873221 1122223333332211 2688888988864
No 279
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.37 E-value=1.2e-12 Score=92.69 Aligned_cols=119 Identities=24% Similarity=0.386 Sum_probs=77.0
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEE-EEECCEEEEEEEecCCCccc-------ccccchh
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRT-IELDGKRIKLQIWDTAGQER-------FRTITTA 83 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g~~~-------~~~~~~~ 83 (160)
....++++++|.+|+||||+||.|+.+...+-..-..+.+..... ...++ ..+.+||+||-.. +......
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 345689999999999999999999965443222112122222222 22233 4789999999433 5555566
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.+...|+++++.++.++.---. .+.++.+..... +.+++++.|.+|...
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~-~~~~i~~VtQ~D~a~ 162 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTD-EDFLRDVIILGL-DKRVLFVVTQADRAE 162 (296)
T ss_pred HhhhccEEEEeccCCCccccCC-HHHHHHHHHhcc-CceeEEEEehhhhhc
Confidence 7888999999999987532212 223444433333 478999999999743
No 280
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.37 E-value=6.5e-12 Score=93.71 Aligned_cols=70 Identities=19% Similarity=0.248 Sum_probs=55.7
Q ss_pred EEEEEecCCCcccccccchhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCC
Q 031411 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQHA-SDNVNKILVGNKADM 132 (160)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl 132 (160)
+.+.+||.+|+......|..++.+++++++|+|+++. ..++.....+..+.... -.+.|++|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 5789999999999999999999999999999999973 34445555555554432 257899999999996
Q ss_pred C
Q 031411 133 D 133 (160)
Q Consensus 133 ~ 133 (160)
.
T Consensus 264 ~ 264 (342)
T smart00275 264 F 264 (342)
T ss_pred H
Confidence 3
No 281
>PTZ00258 GTP-binding protein; Provisional
Probab=99.37 E-value=1.3e-11 Score=92.98 Aligned_cols=86 Identities=21% Similarity=0.212 Sum_probs=60.6
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEE---------------EEEEEecCCCcccc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERF 77 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~ 77 (160)
...++|.++|.|++|||||+|.|.+........+..+.+.....+.+.+.+ .++.++|+||-..-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 455799999999999999999998876555444555555655555554322 25899999994321
Q ss_pred ----ccc---chhhccCCcEEEEEEECC
Q 031411 78 ----RTI---TTAYYRGAMGILLVYDVT 98 (160)
Q Consensus 78 ----~~~---~~~~~~~~~~~i~v~d~~ 98 (160)
..+ .-..++++|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 111 123467899999999984
No 282
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.34 E-value=5.8e-12 Score=97.00 Aligned_cols=145 Identities=12% Similarity=0.132 Sum_probs=85.5
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCC---CCccccceeeeEEEEEE---------------EECC------------E
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRTI---------------ELDG------------K 62 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~------------~ 62 (160)
...++|.++|.-++|||||+..|++... .++..+..+++...... .... .
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4568999999999999999999997433 33332322221111100 0000 0
Q ss_pred ----EEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-
Q 031411 63 ----RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR- 137 (160)
Q Consensus 63 ----~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~- 137 (160)
...+.|+|+|||+.|-......+..+|++++|+|+.+...-....+.+..+.. .. -.+++++.||+|+.+..+
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~-lg-i~~iIVvlNKiDlv~~~~~ 189 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEI-MK-LKHIIILQNKIDLVKEAQA 189 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHH-cC-CCcEEEEEecccccCHHHH
Confidence 13689999999998877666778899999999999863111111222222211 11 236899999999963222
Q ss_pred CCChhHHHHHhh-----hcceEEEEee
Q 031411 138 EAPFCLHETILL-----TVQVHLVILK 159 (160)
Q Consensus 138 ~~~~~~~~~~~~-----~~~~~~~~~k 159 (160)
....++++++.. ...+.++|++
T Consensus 190 ~~~~~ei~~~l~~~~~~~~~iipVSA~ 216 (460)
T PTZ00327 190 QDQYEEIRNFVKGTIADNAPIIPISAQ 216 (460)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEeeCC
Confidence 222344444433 2345555553
No 283
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.31 E-value=9.3e-11 Score=87.51 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=58.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEE---------------EEEEEecCCCcccc---
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERF--- 77 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~--- 77 (160)
++|+++|.|++|||||+|.|++........+..+.+.....+.+.+.+ .++.+.|+||-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999877544444555555555455544422 25899999994321
Q ss_pred -ccc---chhhccCCcEEEEEEECC
Q 031411 78 -RTI---TTAYYRGAMGILLVYDVT 98 (160)
Q Consensus 78 -~~~---~~~~~~~~~~~i~v~d~~ 98 (160)
..+ .-..++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 111 122467899999999985
No 284
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=3.9e-11 Score=96.16 Aligned_cols=133 Identities=18% Similarity=0.115 Sum_probs=94.8
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCC------------------CCccccceeeeEEEEEEEECCEEEEEEEecCCC
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 73 (160)
..+.-+|.++|+-++|||||..+|+...- .++..+..++......+.+.+ .+.++++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence 45667999999999999999999974211 112233333444444555554 47899999999
Q ss_pred cccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhh
Q 031411 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILL 149 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~ 149 (160)
|-.|.......++-+|++++|+|+...-..+.-.-|.+.. ..++|.+++.||+|.....-....++++....
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~ 157 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLGADFYLVVEQLKERLG 157 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECccccccChhhhHHHHHHHhC
Confidence 9999999999999999999999998654433333343333 34889999999999876666666665555443
No 285
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.26 E-value=6.7e-11 Score=89.77 Aligned_cols=83 Identities=24% Similarity=0.331 Sum_probs=56.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEE---------------------ECC-EEEEEEEecCCC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIE---------------------LDG-KRIKLQIWDTAG 73 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~D~~g 73 (160)
++|+++|.+++|||||+|+|++........+..+++....... .++ ....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 5899999999999999999998766533333333333332211 111 226789999999
Q ss_pred c----ccccccchhh---ccCCcEEEEEEECC
Q 031411 74 Q----ERFRTITTAY---YRGAMGILLVYDVT 98 (160)
Q Consensus 74 ~----~~~~~~~~~~---~~~~~~~i~v~d~~ 98 (160)
. .+...+...+ ++++|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2333344444 78999999999997
No 286
>PRK09866 hypothetical protein; Provisional
Probab=99.26 E-value=1.7e-10 Score=90.90 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=50.4
Q ss_pred EEEEEecCCCcccc-----cccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccC
Q 031411 64 IKLQIWDTAGQERF-----RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRE 138 (160)
Q Consensus 64 ~~~~~~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~ 138 (160)
.++.|.||||-... .......+.++|++++|+|.....+... ...+..+.+. .++.|++++.||+|+.+. ..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dr-ee 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDR-NS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCc-cc
Confidence 47889999996432 2234457899999999999986433222 1223333332 223699999999998522 22
Q ss_pred CChhHHHHHh
Q 031411 139 APFCLHETIL 148 (160)
Q Consensus 139 ~~~~~~~~~~ 148 (160)
...+..+++.
T Consensus 307 ddkE~Lle~V 316 (741)
T PRK09866 307 DDADQVRALI 316 (741)
T ss_pred chHHHHHHHH
Confidence 2244555543
No 287
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.24 E-value=1.9e-10 Score=90.77 Aligned_cols=122 Identities=19% Similarity=0.220 Sum_probs=74.1
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEEECCEEEEEEEecCCCccccc-------cc--
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TI-- 80 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~-- 80 (160)
+-+..++|+|+|.+|+||||++|.|++..... ......+..........++ ..+.++||||-.... .+
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk 191 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILS 191 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHH
Confidence 34566899999999999999999999865332 2111111112222223444 578999999954321 11
Q ss_pred -chhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC--cEEEEEeCCCCCC
Q 031411 81 -TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV--NKILVGNKADMDE 134 (160)
Q Consensus 81 -~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--pi~vv~~K~Dl~~ 134 (160)
...++. ..|++|+|.++........-..++..+...+...+ ..||+.|..|..+
T Consensus 192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 111333 47999999887533322222345666655554332 6889999999753
No 288
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.23 E-value=6.9e-11 Score=89.28 Aligned_cols=131 Identities=19% Similarity=0.228 Sum_probs=91.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC--CC--------------CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGS--FT--------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 79 (160)
-+|.++-.-..|||||+..|+.+. |. .+.....++-.....+.+++ +.+++.|||||..|..
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~--~~INIvDTPGHADFGG 83 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG--TRINIVDTPGHADFGG 83 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC--eEEEEecCCCcCCccc
Confidence 489999999999999999998532 21 11223333322333445555 7899999999999999
Q ss_pred cchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcc
Q 031411 80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQ 152 (160)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~ 152 (160)
.....+.=+|++++++|+.+..- ...+ --+.+....+++-+|+.||.|.+....+...+++..+..+++
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpM-PQTr---FVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~ 152 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPM-PQTR---FVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELG 152 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCC-Cchh---hhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999986321 1111 112233334676777889999987777767777777765443
No 289
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.23 E-value=1.9e-10 Score=84.61 Aligned_cols=139 Identities=19% Similarity=0.247 Sum_probs=81.4
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCc----------cccceeeeEEEEEEEECCEEEEEEEecCCCc-------c
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------E 75 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~ 75 (160)
-..++|+++|+.|+|||||+|.|++...... ..++..+..+...+.-++-.+++++.||||- .
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 3458999999999999999999987522211 2345555666666667888899999999991 0
Q ss_pred cccc------------------c-chhhcc--CCcEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 76 RFRT------------------I-TTAYYR--GAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 76 ~~~~------------------~-~~~~~~--~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
.|.. + +...+. ++|++++.+..+. ..+..+ .+.+..+.+ .+.++-|+.|+|..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK----RVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc----ccCeeeeeeccccC
Confidence 1100 0 011233 3566776666543 222222 123333332 56788888999964
Q ss_pred -CCccCCChhHHHHHhhhcceEEE
Q 031411 134 -ESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
..+...-.+.+.+....+++..|
T Consensus 176 T~~El~~~K~~I~~~i~~~nI~vf 199 (373)
T COG5019 176 TDDELAEFKERIREDLEQYNIPVF 199 (373)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcee
Confidence 22223333444444445555443
No 290
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.22 E-value=3.7e-11 Score=89.73 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=54.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-Cccccceeee--EEEEEEEECCEEEEEEEecCCCcccccccchh-----hc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGID--FKIRTIELDGKRIKLQIWDTAGQERFRTITTA-----YY 85 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~-----~~ 85 (160)
..++|+|+|++|+|||||||.|.+-... +...++...+ .....+.... --.+.+||+||.......... .+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 4689999999999999999999763221 1111111100 1111112211 114889999995433322222 35
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031411 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132 (160)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl 132 (160)
...|.+|++.+..-.+..-. ....+.+ .+.|+++|-||+|.
T Consensus 113 ~~yD~fiii~s~rf~~ndv~---La~~i~~---~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 113 YRYDFFIIISSERFTENDVQ---LAKEIQR---MGKKFYFVRTKVDS 153 (376)
T ss_dssp GG-SEEEEEESSS--HHHHH---HHHHHHH---TT-EEEEEE--HHH
T ss_pred cccCEEEEEeCCCCchhhHH---HHHHHHH---cCCcEEEEEecccc
Confidence 67898887665432222112 2233333 36799999999995
No 291
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.2e-10 Score=91.17 Aligned_cols=119 Identities=24% Similarity=0.270 Sum_probs=85.9
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCcc-----------------ccceeeeEEEEE---EEECCEEEEEEEe
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF-----------------ITTIGIDFKIRT---IELDGKRIKLQIW 69 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~~~~~ 69 (160)
.......++.++|.-++|||+|+..|..+..+... .+..++...... -..+++++-+++.
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 45567789999999999999999999875443221 111111111111 1226678899999
Q ss_pred cCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031411 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132 (160)
Q Consensus 70 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl 132 (160)
|||||..+.......++.+|++++++|+...-.+..- +. +.+....++|+++++||.|.
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~---ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RI---IKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HH---HHHHHhccCcEEEEEehhHH
Confidence 9999999999899999999999999999876655432 22 23333458899999999995
No 292
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.22 E-value=3.2e-11 Score=83.55 Aligned_cols=117 Identities=22% Similarity=0.353 Sum_probs=79.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC-CCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccc-----cccchhhccCC
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----RTITTAYYRGA 88 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~~~~ 88 (160)
+-||+++|.+|+|||++-.-+..+. .......+.+++..-.++.+-| ...+.+||.+|++.+ .......++..
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 4599999999999999866555321 1122334444455444555544 256889999998733 22445668899
Q ss_pred cEEEEEEECCChhhHHHH---HHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 89 MGILLVYDVTDESSFNNI---RNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
++++++||++..+--..+ .+-+..+.++.+ ...+..+.+|+|+.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv 129 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLV 129 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhc
Confidence 999999999876544333 334444555655 67899999999985
No 293
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.21 E-value=2.5e-10 Score=80.68 Aligned_cols=109 Identities=14% Similarity=0.171 Sum_probs=65.5
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
.....|+++|.+|+|||||++.+.............+ ... .... ...++.++|+||.. .. .....+.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i~--i~~~--~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PIT--VVTG--KKRRLTFIECPNDI--NA-MIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cEE--EEec--CCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence 3346799999999999999999986422111111111 011 1112 23578999999853 22 223467899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCC
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNK-ILVGNKADMD 133 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi-~vv~~K~Dl~ 133 (160)
+++|++....... ...+..+.. .+.|. +++.||.|+.
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLF 146 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccC
Confidence 9999975432221 122222222 25674 4599999986
No 294
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.21 E-value=5.1e-11 Score=90.59 Aligned_cols=123 Identities=19% Similarity=0.107 Sum_probs=85.2
Q ss_pred CCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccc--cccc-----
Q 031411 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTI----- 80 (160)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~----- 80 (160)
.+.-.+..-+++++|-|++|||||++.++.......+..+++-..+..++.+.- ..+++.||||.-. .+..
T Consensus 161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEm 238 (620)
T KOG1490|consen 161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEM 238 (620)
T ss_pred CCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHH
Confidence 344456667999999999999999999998877766555555444444444443 5788999999321 1111
Q ss_pred -chhhccC-CcEEEEEEECCC--hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 81 -TTAYYRG-AMGILLVYDVTD--ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 81 -~~~~~~~-~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
....+.. -.+++++.|++. ..+.+.--+.++.+...+. +.|.++++||+|+-
T Consensus 239 qsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m 294 (620)
T KOG1490|consen 239 QIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAM 294 (620)
T ss_pred HHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeeccccc
Confidence 1122222 235677788876 4567777778888888777 78999999999974
No 295
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.21 E-value=6.3e-11 Score=79.85 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=43.4
Q ss_pred EEEEecCCCcc----cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 031411 65 KLQIWDTAGQE----RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130 (160)
Q Consensus 65 ~~~~~D~~g~~----~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~ 130 (160)
.+.|+|+||-. ....++..++..+|++++|.+++...+-.....+.+..... ....++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 57899999943 33456777889999999999998865544554455444433 33488888884
No 296
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.17 E-value=4.3e-10 Score=82.44 Aligned_cols=134 Identities=19% Similarity=0.164 Sum_probs=85.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC---------------------------------CccccceeeeEEEEEEEEC
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT---------------------------------TSFITTIGIDFKIRTIELD 60 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~ 60 (160)
..+|++-||.-.-||||||-||+.+.-. .+.....+++..+ ..+.
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAY--RyFs 82 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAY--RYFS 82 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEe--eecc
Confidence 4589999999999999999999753110 1122222333332 2333
Q ss_pred CEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCC
Q 031411 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAP 140 (160)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~ 140 (160)
-.+..|.+-|||||++|.+.......-||+.|+++|+... -.+..+. =..+..... -..+++..||+||. .+.+..
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrR-Hs~I~sLLG-IrhvvvAVNKmDLv-dy~e~~ 158 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRR-HSFIASLLG-IRHVVVAVNKMDLV-DYSEEV 158 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHH-HHHHHHHhC-CcEEEEEEeeeccc-ccCHHH
Confidence 3446899999999999999888888899999999999532 1222111 111222212 34688889999998 444444
Q ss_pred hhHH----HHHhhhcce
Q 031411 141 FCLH----ETILLTVQV 153 (160)
Q Consensus 141 ~~~~----~~~~~~~~~ 153 (160)
++++ ..|+.+++.
T Consensus 159 F~~I~~dy~~fa~~L~~ 175 (431)
T COG2895 159 FEAIVADYLAFAAQLGL 175 (431)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 4443 556666553
No 297
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=4.1e-10 Score=83.35 Aligned_cols=136 Identities=18% Similarity=0.250 Sum_probs=79.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCC---------ccccceeeeEEEEEEEECCEEEEEEEecCCCc-------ccc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------ERF 77 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~~~ 77 (160)
..++++++|+.|.|||||||.|+...... ....+..+......+.-+|-.+++++.||||- ..|
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 45899999999999999999998753322 22334455555555666787889999999991 011
Q ss_pred ------------------cccchhhcc--CCcEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC-C
Q 031411 78 ------------------RTITTAYYR--GAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDE-S 135 (160)
Q Consensus 78 ------------------~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~pi~vv~~K~Dl~~-~ 135 (160)
..+.+..+. ++|++++.+..+.- .+..+ ...+..+. ..++++-|+.|+|... .
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccCCHH
Confidence 111122334 46677776665432 12222 11222332 3677888889999642 2
Q ss_pred ccCCChhHHHHHhhhcceE
Q 031411 136 KREAPFCLHETILLTVQVH 154 (160)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~ 154 (160)
+...-.+.+.+-...+++.
T Consensus 175 El~~~K~~I~~~i~~~nI~ 193 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEEHNIK 193 (366)
T ss_pred HHHHHHHHHHHHHHHcCcc
Confidence 2222223344444444443
No 298
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=2.4e-10 Score=84.27 Aligned_cols=125 Identities=22% Similarity=0.275 Sum_probs=82.3
Q ss_pred CCCCCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCcc---ccceeeeEEEEEEEECCEE------------------
Q 031411 5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF---ITTIGIDFKIRTIELDGKR------------------ 63 (160)
Q Consensus 5 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------------------ 63 (160)
++-...+.+.+..|+++|+-+.||||||+.|+.+.++... .+++ +++.....-+..+
T Consensus 48 p~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL 125 (532)
T KOG1954|consen 48 PALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGL 125 (532)
T ss_pred ccccCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhh
Confidence 3444677888899999999999999999999998887331 2222 1222211111100
Q ss_pred ---------------------EEEEEecCCCcc-----------cccccchhhccCCcEEEEEEECCChhhHHHHHHHHH
Q 031411 64 ---------------------IKLQIWDTAGQE-----------RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIR 111 (160)
Q Consensus 64 ---------------------~~~~~~D~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 111 (160)
-.++++||||.- .+.....=+..++|.++++||+...+--++..+.+.
T Consensus 126 ~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~ 205 (532)
T KOG1954|consen 126 NKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVID 205 (532)
T ss_pred hhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHH
Confidence 178899999932 223333445678999999999977555455554455
Q ss_pred HHHHhcCCCCcEEEEEeCCCCCC
Q 031411 112 NIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 112 ~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.+..+ .-.+-||.||.|+.+
T Consensus 206 aLkG~---EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 206 ALKGH---EDKIRVVLNKADQVD 225 (532)
T ss_pred HhhCC---cceeEEEeccccccC
Confidence 55433 446888899999863
No 299
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.16 E-value=5.2e-10 Score=79.43 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=42.1
Q ss_pred EEEEEecCCCccc-------------ccccchhhccC-CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 031411 64 IKLQIWDTAGQER-------------FRTITTAYYRG-AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNK 129 (160)
Q Consensus 64 ~~~~~~D~~g~~~-------------~~~~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K 129 (160)
..|+++|+||-.. ...+...++++ .+++++++|+...-.-....+..+.+. +.+.++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 4788999999532 12234456664 468999998865322112222333332 347799999999
Q ss_pred CCCCC
Q 031411 130 ADMDE 134 (160)
Q Consensus 130 ~Dl~~ 134 (160)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99863
No 300
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.12 E-value=4.5e-10 Score=93.39 Aligned_cols=102 Identities=21% Similarity=0.195 Sum_probs=72.4
Q ss_pred CCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEE----------------EEEEEecCCCcccccccchhhccCCc
Q 031411 26 VGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR----------------IKLQIWDTAGQERFRTITTAYYRGAM 89 (160)
Q Consensus 26 ~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (160)
++||||+.+|.+...........+.+.....+..+... -.+.|||||||+.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 34999999999877665555555544444444443210 12899999999999888777888899
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 90 GILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 90 ~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
++++|+|+++ +.+++.+. .+.. .++|+++++||+|+.+
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCcc
Confidence 9999999986 44444443 2222 2679999999999963
No 301
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1e-09 Score=84.85 Aligned_cols=131 Identities=18% Similarity=0.139 Sum_probs=86.4
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCccccceeeeEEEEEEE
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGS-------------------------------FTTSFITTIGIDFKIRTIE 58 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 58 (160)
......++++++|..++|||||+-+++... ..++..+..++ ......
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm--~v~~~~ 249 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTM--DVKTTW 249 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeE--EeeeEE
Confidence 445577999999999999999998886421 12223333333 334444
Q ss_pred ECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHH----HHH--HHHHHHHhcCCCCcEEEEEeCCCC
Q 031411 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN----IRN--WIRNIEQHASDNVNKILVGNKADM 132 (160)
Q Consensus 59 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~----~~~--~~~~~~~~~~~~~pi~vv~~K~Dl 132 (160)
++-.+..+++.|.|||..|..-..+....+|+.++|+|++. ..|+. ..+ ....+.+... -..++|+.||+|+
T Consensus 250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~ 327 (603)
T KOG0458|consen 250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDL 327 (603)
T ss_pred EecCceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccc
Confidence 44555789999999999888877778888999999999975 33331 111 1122222222 3367888999999
Q ss_pred CCCccCCChhHHH
Q 031411 133 DESKREAPFCLHE 145 (160)
Q Consensus 133 ~~~~~~~~~~~~~ 145 (160)
. ...+..+++++
T Consensus 328 V-~Wsq~RF~eIk 339 (603)
T KOG0458|consen 328 V-SWSQDRFEEIK 339 (603)
T ss_pred c-CccHHHHHHHH
Confidence 7 44454555543
No 302
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.09 E-value=2.1e-10 Score=82.89 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=57.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEE---------------EEEEEecCCCcccc----c
Q 031411 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERF----R 78 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~----~ 78 (160)
|+++|.|++|||||+|.|++........+..+++.....+.+.+.+ .++.++|+||-..- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999877654444555555665555555432 25899999994321 1
Q ss_pred ccc---hhhccCCcEEEEEEECC
Q 031411 79 TIT---TAYYRGAMGILLVYDVT 98 (160)
Q Consensus 79 ~~~---~~~~~~~~~~i~v~d~~ 98 (160)
.+. -..++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 122 22357899999999874
No 303
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.09 E-value=5.3e-09 Score=78.85 Aligned_cols=137 Identities=17% Similarity=0.174 Sum_probs=78.7
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcC----CCC-------------Ccccc-c-eeeeE-----EEEEEEE-CCEEEEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDG----SFT-------------TSFIT-T-IGIDF-----KIRTIEL-DGKRIKLQ 67 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~----~~~-------------~~~~~-~-~~~~~-----~~~~~~~-~~~~~~~~ 67 (160)
..++.|.++|+.++|||||+++|.+. ... ++... + .+.++ ....+.. ++....+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 35689999999999999999999987 221 11111 0 11111 1222222 44456889
Q ss_pred EecCCCcc--------cccc------c---------------chhhcc-CCcEEEEEE-ECC----ChhhH-HHHHHHHH
Q 031411 68 IWDTAGQE--------RFRT------I---------------TTAYYR-GAMGILLVY-DVT----DESSF-NNIRNWIR 111 (160)
Q Consensus 68 ~~D~~g~~--------~~~~------~---------------~~~~~~-~~~~~i~v~-d~~----~~~~~-~~~~~~~~ 111 (160)
+.||+|-. +... . ....+. .+++.+++. |.+ .++.+ +.-.+++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999911 1111 0 122344 789999888 664 11222 23334566
Q ss_pred HHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEE
Q 031411 112 NIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHL 155 (160)
Q Consensus 112 ~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (160)
++.. .++|++++.||.|-... ...+.+.++..++++..
T Consensus 175 eLk~---~~kPfiivlN~~dp~~~---et~~l~~~l~eky~vpv 212 (492)
T TIGR02836 175 ELKE---LNKPFIILLNSTHPYHP---ETEALRQELEEKYDVPV 212 (492)
T ss_pred HHHh---cCCCEEEEEECcCCCCc---hhHHHHHHHHHHhCCce
Confidence 6654 47899999999993211 13333445555666543
No 304
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.2e-09 Score=80.92 Aligned_cols=84 Identities=17% Similarity=0.184 Sum_probs=60.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECC----------------EEEEEEEecCCCcc---
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG----------------KRIKLQIWDTAGQE--- 75 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~D~~g~~--- 75 (160)
.+++.++|.||+|||||+|.++.........|..+++++...+.+.+ .-..+.|+|.+|--
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 37899999999999999999998775555566666666655444322 12478899988832
Q ss_pred -cccccch---hhccCCcEEEEEEECC
Q 031411 76 -RFRTITT---AYYRGAMGILLVYDVT 98 (160)
Q Consensus 76 -~~~~~~~---~~~~~~~~~i~v~d~~ 98 (160)
+-..+-+ ..++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2233333 3467899999999987
No 305
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.05 E-value=1.7e-09 Score=80.03 Aligned_cols=79 Identities=18% Similarity=0.287 Sum_probs=57.1
Q ss_pred EEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhh-------HHHHHH---HHHHHHHhc-CCCC
Q 031411 53 KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS-------FNNIRN---WIRNIEQHA-SDNV 121 (160)
Q Consensus 53 ~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~---~~~~~~~~~-~~~~ 121 (160)
....+.+.+ ..+.++|.+||.....-|..+++++++++||+++++.+. ..++.+ .+..+-.+. -.+.
T Consensus 186 ~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~t 263 (354)
T KOG0082|consen 186 VEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANT 263 (354)
T ss_pred eEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccC
Confidence 333445555 689999999998888899999999999999999986322 223333 333333222 2478
Q ss_pred cEEEEEeCCCCC
Q 031411 122 NKILVGNKADMD 133 (160)
Q Consensus 122 pi~vv~~K~Dl~ 133 (160)
++++..||.||.
T Consensus 264 siiLFLNK~DLF 275 (354)
T KOG0082|consen 264 SIILFLNKKDLF 275 (354)
T ss_pred cEEEEeecHHHH
Confidence 999999999974
No 306
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=2e-09 Score=80.91 Aligned_cols=127 Identities=15% Similarity=0.111 Sum_probs=83.0
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhc-CCCCCc---------------------cccceeeeEEEEEEEECCEEEEEEEe
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSD-GSFTTS---------------------FITTIGIDFKIRTIELDGKRIKLQIW 69 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~-~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (160)
..++-+..|+-.|.+|||||-++|+- +...+. ..+. +...+..++++-....+++.
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRG--ISVtsSVMqF~Y~~~~iNLL 86 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRG--ISVTSSVMQFDYADCLVNLL 86 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcC--ceEEeeEEEeccCCeEEecc
Confidence 44566899999999999999988762 111111 2222 33333344444334789999
Q ss_pred cCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHH
Q 031411 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLH 144 (160)
Q Consensus 70 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~ 144 (160)
|||||+.+..=...-+-.+|.++.|+|+...-.-..+ +.+ .-....++||+-..||.|.....+-.-.+|+
T Consensus 87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KLf---eVcrlR~iPI~TFiNKlDR~~rdP~ELLdEi 157 (528)
T COG4108 87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KLF---EVCRLRDIPIFTFINKLDREGRDPLELLDEI 157 (528)
T ss_pred CCCCccccchhHHHHHHhhheeeEEEecccCccHHHH-HHH---HHHhhcCCceEEEeeccccccCChHHHHHHH
Confidence 9999999887666678889999999999874322222 122 2122368999999999998644333333333
No 307
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=1.3e-09 Score=76.23 Aligned_cols=60 Identities=28% Similarity=0.478 Sum_probs=44.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC---------CccccceeeeEEEEEEEECCEEEEEEEecCCC
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT---------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 73 (160)
..++|+++|.+|.|||||+|++...... .....+..+......+.-++-+.++++.||||
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPG 113 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPG 113 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCC
Confidence 4589999999999999999999753221 12334444555555566677788999999999
No 308
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=4.2e-09 Score=77.29 Aligned_cols=125 Identities=20% Similarity=0.250 Sum_probs=75.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc-------CCCCCccccceeeeEEEEEEEE-------CCEEEEEEEecCCCccccccc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSD-------GSFTTSFITTIGIDFKIRTIEL-------DGKRIKLQIWDTAGQERFRTI 80 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~-------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~D~~g~~~~~~~ 80 (160)
.+++.++|.-.+|||||.++|.. +..+++..+..+++.....+.. .++..++.++|+|||...-+.
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 39999999999999999999974 2223444444444332222222 345578999999999655544
Q ss_pred chhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC-CCCccCCChhH
Q 031411 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM-DESKREAPFCL 143 (160)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl-~~~~~~~~~~~ 143 (160)
......-.|..++++|....-.-+..+-.+ +.+.. ....+|+.||.|. ++..+....++
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~--c~klvvvinkid~lpE~qr~ski~k 146 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL--CKKLVVVINKIDVLPENQRASKIEK 146 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhhh--hhhhh--ccceEEEEeccccccchhhhhHHHH
Confidence 444445578999999997632222211111 22211 2246777788885 54444444443
No 309
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.97 E-value=8.4e-10 Score=69.51 Aligned_cols=118 Identities=21% Similarity=0.185 Sum_probs=76.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccc----hhhccCCcEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----TAYYRGAMGI 91 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----~~~~~~~~~~ 91 (160)
-|++++|..|+|||||.+.+.+...... .+ ..++++++ -..||||..--...| .....++|++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk--KT-------QAve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi 68 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK--KT-------QAVEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVI 68 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc--cc-------ceeeccCc----cccCCchhhhhhhHHHHHHHHHhhcccee
Confidence 3899999999999999999998654321 12 22333332 258999943222233 3445789999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
+++-.++++++.=. .-+... ...|+|=+.+|.||.+ +...+..++|..+-|...+
T Consensus 69 ~~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLae---d~dI~~~~~~L~eaGa~~I 123 (148)
T COG4917 69 IYVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAE---DADISLVKRWLREAGAEPI 123 (148)
T ss_pred eeeecccCccccCC-----cccccc--cccceEEEEecccccc---hHhHHHHHHHHHHcCCcce
Confidence 99999998755211 001111 2446888999999973 4556667777776665433
No 310
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.94 E-value=1.1e-09 Score=77.92 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=37.3
Q ss_pred EEEEecCCCcccccccchhhc--------cCCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 65 KLQIWDTAGQERFRTITTAYY--------RGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 65 ~~~~~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.+.++|||||-+.-..+...- ...-++++++|+....+ ..-+..++..+......++|.+.+.||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCccc
Confidence 688999999876555444332 34558888898864332 12222334443333334889999999999974
No 311
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=5.3e-09 Score=75.21 Aligned_cols=135 Identities=16% Similarity=0.148 Sum_probs=89.4
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhc----------------CCCCCccccceeeeEEEEEEEECCEEEEEEEecCCC
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSD----------------GSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 73 (160)
......+||..+|.-+.|||||-..+.. ++.+++.... +..+..++.+.-...++-..|+||
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rG--ITIntahveyet~~rhyahVDcPG 84 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARG--ITINTAHVEYETANRHYAHVDCPG 84 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcC--ceeccceeEEecCCceEEeccCCC
Confidence 3445679999999999999999776653 1223333333 445556666655556788999999
Q ss_pred cccccccchhhccCCcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCcc--CCChhHHHHH
Q 031411 74 QERFRTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNV-NKILVGNKADMDESKR--EAPFCLHETI 147 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~-pi~vv~~K~Dl~~~~~--~~~~~~~~~~ 147 (160)
|..|-........+.|+.|+|+++++. .+.+.+ + +.+. -++ .++++.||+|+.++.. +.-..|.+++
T Consensus 85 HaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi---L--larq--vGvp~ivvflnK~Dmvdd~ellelVemEvreL 157 (394)
T COG0050 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI---L--LARQ--VGVPYIVVFLNKVDMVDDEELLELVEMEVREL 157 (394)
T ss_pred hHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh---h--hhhh--cCCcEEEEEEecccccCcHHHHHHHHHHHHHH
Confidence 998877666667789999999999983 333332 1 1111 245 4666799999974332 2333456666
Q ss_pred hhhcce
Q 031411 148 LLTVQV 153 (160)
Q Consensus 148 ~~~~~~ 153 (160)
..+++.
T Consensus 158 Ls~y~f 163 (394)
T COG0050 158 LSEYGF 163 (394)
T ss_pred HHHcCC
Confidence 666654
No 312
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.89 E-value=4.6e-09 Score=68.98 Aligned_cols=54 Identities=26% Similarity=0.307 Sum_probs=37.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
+++++|.+|+|||||+|++.+..... .....+.+.....+..++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876532 111222223333444444 4789999994
No 313
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=6.6e-09 Score=72.82 Aligned_cols=113 Identities=20% Similarity=0.293 Sum_probs=73.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEE--EECCEEEEEEEecCCCccccccc---chhhccCCcE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTI--ELDGKRIKLQIWDTAGQERFRTI---TTAYYRGAMG 90 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~g~~~~~~~---~~~~~~~~~~ 90 (160)
.+|+++|...+||||+-.......-+.+ |.-++.+.+.. .+.+.-+.|.+||+|||-.+=.. ....++++.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPne---TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNE---TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCc---eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 5799999999999999887776553322 22222221111 11223368999999998643221 2456889999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031411 91 ILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132 (160)
Q Consensus 91 ~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl 132 (160)
+++++|+.+. +.+.++........+..+ ++.+=|..+|.|-
T Consensus 105 LifvIDaQddy~eala~L~~~v~raykvNp-~in~EVfiHKvDG 147 (347)
T KOG3887|consen 105 LIFVIDAQDDYMEALARLHMTVERAYKVNP-NINFEVFIHKVDG 147 (347)
T ss_pred EEEEEechHHHHHHHHHHHHHhhheeecCC-CceEEEEEEeccC
Confidence 9999999653 334444444444444444 7889999999994
No 314
>PRK13768 GTPase; Provisional
Probab=98.87 E-value=5.1e-09 Score=75.28 Aligned_cols=69 Identities=20% Similarity=0.158 Sum_probs=42.3
Q ss_pred EEEEecCCCcccc---cccchhh---ccC--CcEEEEEEECCChhhHHHH--HHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 65 KLQIWDTAGQERF---RTITTAY---YRG--AMGILLVYDVTDESSFNNI--RNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 65 ~~~~~D~~g~~~~---~~~~~~~---~~~--~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.+.+||+||+... ...+..+ +.. .+++++++|+......... ..|+...... ..+.|+++++||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 6899999997553 2223222 222 8999999999654322222 1222222222 23789999999999863
No 315
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.87 E-value=2.1e-08 Score=76.36 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=50.8
Q ss_pred EEEEEecCCCcccccccchhhccCCcEEEEEEECCChh----------hHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCC
Q 031411 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES----------SFNNIRNWIRNIEQH-ASDNVNKILVGNKADM 132 (160)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl 132 (160)
..+.++|++|+.....-|..++.+++++++|+++++-+ .+......+..+... .-.+.|++|++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 67899999999988899999999999999999987521 122333344444332 2247899999999995
No 316
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.83 E-value=8e-08 Score=67.89 Aligned_cols=98 Identities=22% Similarity=0.197 Sum_probs=69.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccc-------cccchhhcc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------RTITTAYYR 86 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~ 86 (160)
...+++++|-|++|||||+..+..-.-.......+++......+.+++ ..+++.|+||.-.- .++..+..+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence 447999999999999999999987554433333444455555677777 57899999994221 223445567
Q ss_pred CCcEEEEEEECCChhhHH-HHHHHHHHH
Q 031411 87 GAMGILLVYDVTDESSFN-NIRNWIRNI 113 (160)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~-~~~~~~~~~ 113 (160)
-+|+++.+.|++..+... .+.+.+..+
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 899999999999865443 556666666
No 317
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.82 E-value=3.3e-09 Score=75.54 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=23.2
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
.....+-|+++|..|||||||.++|..
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHH
Confidence 445568899999999999999999964
No 318
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.82 E-value=2.1e-08 Score=71.74 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=58.8
Q ss_pred ccccccchhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcc-
Q 031411 75 ERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQ- 152 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~- 152 (160)
+++..+.+.++.++|.+++|||+.++. +++.+.+|+..+.. .++|+++++||+||.+. .++..+.++.+. +.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~-~~~~~~~~~~~~-~~g~ 98 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDD-EDMEKEQLDIYR-NIGY 98 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCC-HHHHHHHHHHHH-HCCC
Confidence 567777888999999999999999877 89999999976643 47899999999999632 233334444443 344
Q ss_pred -eEEEEee
Q 031411 153 -VHLVILK 159 (160)
Q Consensus 153 -~~~~~~k 159 (160)
..++|+|
T Consensus 99 ~v~~~SAk 106 (245)
T TIGR00157 99 QVLMTSSK 106 (245)
T ss_pred eEEEEecC
Confidence 4445554
No 319
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.80 E-value=1.8e-08 Score=68.36 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=38.5
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeEEEEEEEECCEEEEEEEecCCC
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 73 (160)
+..++++++|.+|+|||||+|+|.+... .....+..+ .....+..+. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T--~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVT--KSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeE--cceEEEEeCC---CEEEEECcC
Confidence 3458999999999999999999998654 222333333 2223333333 578999998
No 320
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.79 E-value=2.4e-08 Score=66.68 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=36.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCC
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 73 (160)
...+++++|.+|+|||||+|+|.+.... ....+..+ .....+..++ .+.+.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGET--KVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCee--EeEEEEEcCC---CEEEEECcC
Confidence 3578999999999999999999975442 22222222 2222223322 378999998
No 321
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=4.3e-08 Score=78.06 Aligned_cols=116 Identities=19% Similarity=0.147 Sum_probs=78.5
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEE------------CCE----EEEEEEecCCC
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL------------DGK----RIKLQIWDTAG 73 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~~----~~~~~~~D~~g 73 (160)
...-+..=++|+|.-.+|||-|+..+.+.+.......+.+-......+.. +++ .--+.++||||
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg 549 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG 549 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence 33445567899999999999999999875443332222221111111111 111 12467899999
Q ss_pred cccccccchhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031411 74 QERFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl 132 (160)
|+.|..++.....-||++|+|+|+.. +.+++.+ ......+.|++|.+||+|.
T Consensus 550 hEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi-------~lLR~rktpFivALNKiDR 604 (1064)
T KOG1144|consen 550 HESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-------NLLRMRKTPFIVALNKIDR 604 (1064)
T ss_pred chhhhhhhhccccccceEEEEeehhccCCcchhHHH-------HHHHhcCCCeEEeehhhhh
Confidence 99999999988999999999999965 4444443 2222357899999999995
No 322
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.75 E-value=3.6e-08 Score=73.87 Aligned_cols=84 Identities=18% Similarity=0.035 Sum_probs=60.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeEEEEEEEECCEE---------------EEEEEecCCCcccc--
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERF-- 77 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~-- 77 (160)
+++.++|.|++|||||++.|++... .....+..+.+.+...+.+.+.+ ..+.+.|.||-..-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998776 44444555555555555554432 36789999994321
Q ss_pred --cc---cchhhccCCcEEEEEEECCC
Q 031411 78 --RT---ITTAYYRGAMGILLVYDVTD 99 (160)
Q Consensus 78 --~~---~~~~~~~~~~~~i~v~d~~~ 99 (160)
.. ..-..++.+|++++|++..+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 11 23345788999999999853
No 323
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.71 E-value=9.8e-08 Score=81.54 Aligned_cols=112 Identities=21% Similarity=0.228 Sum_probs=72.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCcc------ccceeeeEEEEEEEECCEEEEEEEecCCCcc--------cccccch
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSF------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITT 82 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~ 82 (160)
=.+|+|++|+||||++... +-.++-.. ....+-+. ...+.+.+ +-+++|++|.. .....|.
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~ 187 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHH
Confidence 3689999999999999877 33333211 01111111 12334444 45699999932 1222354
Q ss_pred hhc---------cCCcEEEEEEECCCh-----hhH----HHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 83 AYY---------RGAMGILLVYDVTDE-----SSF----NNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 83 ~~~---------~~~~~~i~v~d~~~~-----~~~----~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
.++ +-.|++|+++|+.+- +.. ..++..+.++.+...-.+|++|+.||+|+.
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 443 238999999999752 111 356667788888777799999999999974
No 324
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.71 E-value=5.9e-08 Score=65.77 Aligned_cols=57 Identities=23% Similarity=0.288 Sum_probs=38.6
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
+..++++++|.+++|||||+|++.+..+.. ...+..+ .....+..+ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T--~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVT--KGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEE--eeeEEEEec---CCEEEEECCCC
Confidence 345799999999999999999999876532 1222222 222333333 25789999994
No 325
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.69 E-value=3.9e-08 Score=71.99 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=65.5
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCE---------------EEEEEEecCCCccc-
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQER- 76 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~- 76 (160)
...+++.++|.|++|||||+|.|++........|..+++.+...+...+. ...++++|+.|--+
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 36689999999999999999999998887777888888887776655332 24789999988322
Q ss_pred ---ccccch---hhccCCcEEEEEEECCC
Q 031411 77 ---FRTITT---AYYRGAMGILLVYDVTD 99 (160)
Q Consensus 77 ---~~~~~~---~~~~~~~~~i~v~d~~~ 99 (160)
-..+-+ +.++.+|+++-|+++..
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 222222 34678999999988754
No 326
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.68 E-value=7.4e-08 Score=64.22 Aligned_cols=56 Identities=21% Similarity=0.247 Sum_probs=37.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCC
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 73 (160)
...+++++|.+++||||+++++.+.... ...++.+..........++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 3468899999999999999999975432 2233333322222222333 588999998
No 327
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.66 E-value=1e-07 Score=69.58 Aligned_cols=121 Identities=18% Similarity=0.158 Sum_probs=79.9
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCc--ccccccc------hhh
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ--ERFRTIT------TAY 84 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~~~~~~------~~~ 84 (160)
....-|.++|-+|+|||||++.|+............+++.+.......... .+.+-||.|= +--..+. -..
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence 344689999999999999999999766666666677777776666664433 5778899881 1111111 123
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCC----CCcEEEEEeCCCCCC
Q 031411 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD----NVNKILVGNKADMDE 134 (160)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~pi~vv~~K~Dl~~ 134 (160)
+..+|+++.+.|++.|+.-+....-+..+.+..-. ...++=|-||.|..+
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 56799999999999987655554444444442111 123455678888743
No 328
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.66 E-value=8.8e-08 Score=69.78 Aligned_cols=57 Identities=25% Similarity=0.344 Sum_probs=39.2
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
...++++++|.+|+|||||+|+|.+.... ....+..+ .....+..+. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVT--KGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCee--cceEEEEeCC---CEEEEECCCc
Confidence 34689999999999999999999976532 22222222 2233444433 4789999996
No 329
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=2.7e-08 Score=72.39 Aligned_cols=134 Identities=17% Similarity=0.134 Sum_probs=80.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC---CCccccceeeeEEEE--------------------EEEEC----CEEEEE
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIR--------------------TIELD----GKRIKL 66 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~--------------------~~~~~----~~~~~~ 66 (160)
..++|.++|.-..|||||...|++--. .++..+..++...+. .+... .-..++
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 469999999999999999999986322 222222222110000 00001 112477
Q ss_pred EEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-CCChhHHH
Q 031411 67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-EAPFCLHE 145 (160)
Q Consensus 67 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~-~~~~~~~~ 145 (160)
.|.|.|||+-.-...-+...-.|++++++.++.+..-....+-+..+.-. .-..++++.||.|+...++ ....++++
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~qIk 166 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYEQIK 166 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHHHHH
Confidence 89999999754433333344579999999998754333333323333221 1347999999999964444 35567788
Q ss_pred HHhh
Q 031411 146 TILL 149 (160)
Q Consensus 146 ~~~~ 149 (160)
+|.+
T Consensus 167 ~Fvk 170 (415)
T COG5257 167 EFVK 170 (415)
T ss_pred HHhc
Confidence 8765
No 330
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.65 E-value=1.2e-07 Score=69.43 Aligned_cols=57 Identities=28% Similarity=0.358 Sum_probs=40.0
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
...++++++|.+|+|||||+|.|.+... .....+..+.. ...+..+. .+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeCC---cEEEEECCCc
Confidence 4568999999999999999999998654 22333333322 23344443 5789999996
No 331
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.63 E-value=7.4e-08 Score=66.33 Aligned_cols=53 Identities=28% Similarity=0.383 Sum_probs=35.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC---------CCccccceeeeEEEEEEEECCEEEEEEEecCCC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 73 (160)
.+++++|.+|+|||||+|.|.+... ..+..+.++ .....+..+. .+.++||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT--LDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee--eeeEEEecCC---CCEEEeCcC
Confidence 5899999999999999999997432 222223333 2233344433 478999998
No 332
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=8e-07 Score=70.39 Aligned_cols=117 Identities=14% Similarity=0.226 Sum_probs=70.3
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCc-ccccee------------------------------------------
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-FITTIG------------------------------------------ 49 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~------------------------------------------ 49 (160)
+...||++.|..++||||++|.++..+.-++ ..+++.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4568999999999999999999975433211 001000
Q ss_pred eeEEEEEEEECCEE-----EEEEEecCCCcc---cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC
Q 031411 50 IDFKIRTIELDGKR-----IKLQIWDTAGQE---RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV 121 (160)
Q Consensus 50 ~~~~~~~~~~~~~~-----~~~~~~D~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (160)
.......+.+++.. -.+.+.|.||-. ........+..++|++|+|.++.+..+. .-++.+..+.+ ...
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~-sek~Ff~~vs~---~Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTL-SEKQFFHKVSE---EKP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHH-HHHHHHHHhhc---cCC
Confidence 00001111111111 146688999943 4444556778899999999999654433 22334444433 345
Q ss_pred cEEEEEeCCCCC
Q 031411 122 NKILVGNKADMD 133 (160)
Q Consensus 122 pi~vv~~K~Dl~ 133 (160)
.|+++-||.|..
T Consensus 263 niFIlnnkwDas 274 (749)
T KOG0448|consen 263 NIFILNNKWDAS 274 (749)
T ss_pred cEEEEechhhhh
Confidence 677888888986
No 333
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.61 E-value=1.2e-07 Score=70.49 Aligned_cols=58 Identities=28% Similarity=0.341 Sum_probs=41.8
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
....+++++|-|++||||+||+|.+.... ...+..+.+.....+..+. .+.++||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDD---GIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCC---CeEEecCCCc
Confidence 44588999999999999999999986652 2222224444445555555 4789999994
No 334
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=3e-07 Score=73.48 Aligned_cols=118 Identities=23% Similarity=0.225 Sum_probs=78.3
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCc--------------cccceeeeEEEEEEEECCEEEEEEEecCCCccc
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS--------------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (160)
+....-+++++..-..|||||+..|...+..-+ ...+.++......+..-.+.+.++++|+|||-.
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 344567899999999999999999875332111 111222222222223333447899999999999
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031411 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl 132 (160)
|.....+..+-+|++++++|....-..+.. ..+.+..-.+...++++||+|.
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~----~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTY----AVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHH----HHHHHHHHccCceEEEEehhhh
Confidence 999999999999999999999764332222 1222222246667888899993
No 335
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.57 E-value=4.2e-07 Score=63.13 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
+++.++|+.|+|||||++++.+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999988753
No 336
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.54 E-value=4.9e-07 Score=67.26 Aligned_cols=60 Identities=22% Similarity=0.164 Sum_probs=38.4
Q ss_pred EEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
+.+.|.||+|..+.... ....+|.++++.+....+.+..+..- +.. ..-++|.||+|+.+
T Consensus 149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~g---i~E-----~aDIiVVNKaDl~~ 208 (332)
T PRK09435 149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKG---IME-----LADLIVINKADGDN 208 (332)
T ss_pred CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhh---hhh-----hhheEEeehhcccc
Confidence 57899999996533322 45679999999775445554443321 111 12378889999863
No 337
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.53 E-value=2.5e-06 Score=56.53 Aligned_cols=112 Identities=21% Similarity=0.305 Sum_probs=67.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCC-Ccc-----------------
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA-GQE----------------- 75 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-g~~----------------- 75 (160)
..+||.+-|+||+||||++.++.+..-... ..- -.+.+..+..+++++-|.+.|+. |..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kv--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG-YKV--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC-cee--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 458999999999999999998875322111 111 23566777888888888888877 311
Q ss_pred ----ccccc----chhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 031411 76 ----RFRTI----TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131 (160)
Q Consensus 76 ----~~~~~----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~D 131 (160)
.++.. ....++.+|+++ +|--.+..+. .++....+.....++.|++...++.+
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrs 141 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRS 141 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 01111 122345567665 5655544332 22344444555556778888777664
No 338
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.52 E-value=3.2e-07 Score=61.17 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=37.3
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeEEEEEEEECCEEEEEEEecCCC
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 73 (160)
....+++++|.+++|||||+|.+.+... .....+..+.... ..... ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCC
Confidence 4568899999999999999999998653 2222222222222 22333 2588999998
No 339
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.50 E-value=1.8e-07 Score=72.44 Aligned_cols=135 Identities=21% Similarity=0.317 Sum_probs=98.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.+|+.|+|..++|||+|+++++.+.|.+...+..+ .+.+++..++....+.+.|.+|.. -..+-..+|++||+
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv 102 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV 102 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence 48999999999999999999999988766444433 456677778888888899988742 23355679999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCC-ccCCChhHHHHHhhh-cceEEE
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDES-KREAPFCLHETILLT-VQVHLV 156 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~-~~~~~~~~~~~~~~~-~~~~~~ 156 (160)
|...+..+|+.+......+..+. ...+|.++++++.-.... .+.+...++.+++.+ ..|.|+
T Consensus 103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~ 167 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYY 167 (749)
T ss_pred EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCcccee
Confidence 99999999999887777765432 357899999887665422 334444555555544 345554
No 340
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1.1e-06 Score=66.49 Aligned_cols=111 Identities=23% Similarity=0.173 Sum_probs=79.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC---CCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
-|+-+|.-..|||||+..+.+... +++.....+.+.....+...+ ..+.|.|.||++++-......+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 477889999999999999997543 355555566666555555555 378999999999887767777888999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 94 VYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 94 v~d~~~---~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
|+++++ +.+-|.+ . +..... ....++++||+|+.+.
T Consensus 80 vV~~deGl~~qtgEhL----~-iLdllg-i~~giivltk~D~~d~ 118 (447)
T COG3276 80 VVAADEGLMAQTGEHL----L-ILDLLG-IKNGIIVLTKADRVDE 118 (447)
T ss_pred EEeCccCcchhhHHHH----H-HHHhcC-CCceEEEEeccccccH
Confidence 999964 3333333 1 222222 3356899999999743
No 341
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=6.4e-07 Score=65.85 Aligned_cols=135 Identities=14% Similarity=0.139 Sum_probs=88.2
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhc----------------CCCCCccccceeeeEEEEEEEECCEEEEEEEecCCC
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSD----------------GSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 73 (160)
...+..++|.-+|.-..|||||-..+.. ++.+++..+ ++..+..++.+.-...++-=.|+||
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaR--GITIn~aHveYeTa~RhYaH~DCPG 126 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKAR--GITINAAHVEYETAKRHYAHTDCPG 126 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhc--cceEeeeeeeeeccccccccCCCCc
Confidence 3445679999999999999999766542 122233333 3456667777765556777899999
Q ss_pred cccccccchhhccCCcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccC--CChhHHHHHh
Q 031411 74 QERFRTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRE--APFCLHETIL 148 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~--~~~~~~~~~~ 148 (160)
|..|-......-...|+.|+|+.++|. .+-+.+ + +.+... -..+++..||.|+.++... ...-|++++.
T Consensus 127 HADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHl---L--LArQVG-V~~ivvfiNKvD~V~d~e~leLVEmE~RElL 200 (449)
T KOG0460|consen 127 HADYIKNMITGAAQMDGAILVVAATDGPMPQTREHL---L--LARQVG-VKHIVVFINKVDLVDDPEMLELVEMEIRELL 200 (449)
T ss_pred hHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHH---H--HHHHcC-CceEEEEEecccccCCHHHHHHHHHHHHHHH
Confidence 988876666667789999999999984 333332 1 222112 2357777999999744332 2224466666
Q ss_pred hhcc
Q 031411 149 LTVQ 152 (160)
Q Consensus 149 ~~~~ 152 (160)
.+++
T Consensus 201 se~g 204 (449)
T KOG0460|consen 201 SEFG 204 (449)
T ss_pred HHcC
Confidence 6654
No 342
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=6.3e-08 Score=72.90 Aligned_cols=126 Identities=17% Similarity=0.181 Sum_probs=87.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC--------CCCCc--------cccceeeeEEEEEEEECCEEEEEEEecCCCccccc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDG--------SFTTS--------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (160)
.-+|.++..-.+||||.-++++.. ..... .....++......+.++=+.+++.++||||+..|.
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 358999999999999999988631 11100 11122234455555555455789999999999999
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHH
Q 031411 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLH 144 (160)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~ 144 (160)
-....+++-.|+++.|||++-...-+.+.-|-+ ....++|-....||+|.....-+...+.+
T Consensus 117 leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~anfe~avdsi 178 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLAANFENAVDSI 178 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhhhhhhhHHHHH
Confidence 989999999999999999987554455554543 33457899999999998644444333333
No 343
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.45 E-value=9.7e-07 Score=65.94 Aligned_cols=140 Identities=19% Similarity=0.144 Sum_probs=84.0
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCcc--------------ccceeeeEEEEEEEECCEE-----------
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF--------------ITTIGIDFKIRTIELDGKR----------- 63 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~----------- 63 (160)
.+..+..+.+..+|.-+.|||||.-.|..+..+... .+..+-+.....+.+++.+
T Consensus 111 ~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a 190 (527)
T COG5258 111 TEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA 190 (527)
T ss_pred ccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHH
Confidence 445677899999999999999999988765443221 1111112222333333221
Q ss_pred ----------EEEEEecCCCcccccccch--hhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 031411 64 ----------IKLQIWDTAGQERFRTITT--AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131 (160)
Q Consensus 64 ----------~~~~~~D~~g~~~~~~~~~--~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~D 131 (160)
--+.|.|+.||+.|-+... ..-...|..++++.+++..+.-. ++-+.-+. .-.+|++++.||+|
T Consensus 191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~---a~~lPviVvvTK~D 266 (527)
T COG5258 191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL---AMELPVIVVVTKID 266 (527)
T ss_pred HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh---hhcCCEEEEEEecc
Confidence 1456899999998865433 33357899999999887543211 11111111 12789999999999
Q ss_pred CCCCcc-CCChhHHHHHhhhcc
Q 031411 132 MDESKR-EAPFCLHETILLTVQ 152 (160)
Q Consensus 132 l~~~~~-~~~~~~~~~~~~~~~ 152 (160)
+.++++ .-..+++.++.+..+
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~ 288 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVG 288 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhc
Confidence 975443 333345555544433
No 344
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.45 E-value=8.2e-07 Score=63.60 Aligned_cols=115 Identities=22% Similarity=0.213 Sum_probs=68.9
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCcccc-ceeeeEEEEEEEECCEEEEEEEecCCC----------ccccc
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFR 78 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~ 78 (160)
.+.+.+.+++++|.+++|||+|+|.+........... ..+.......+.++. .+.+.|.|| ...+.
T Consensus 131 ~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~ 207 (320)
T KOG2486|consen 131 CPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWD 207 (320)
T ss_pred CCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHh
Confidence 3456678999999999999999999987554322222 223223333444444 688999999 12333
Q ss_pred ccchhhccC---CcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 79 TITTAYYRG---AMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 79 ~~~~~~~~~---~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
.+...++.+ .--+.+++|++-+- .-.....|+. ..++|.-+|.||+|..
T Consensus 208 ~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g------e~~VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 208 KFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLG------ENNVPMTSVFTKCDKQ 261 (320)
T ss_pred HhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHh------hcCCCeEEeeehhhhh
Confidence 334444322 23445566665421 1112223332 2489999999999963
No 345
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=6.6e-07 Score=64.17 Aligned_cols=62 Identities=24% Similarity=0.442 Sum_probs=45.7
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccc----cceeeeEEEEEEEECCEEEEEEEecCCC
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI----TTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~g 73 (160)
+-..++|+.+|.+|.|||||+++|.+-.+...+. ++..+......+.-.+-++.+++.||.|
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 4467999999999999999999999987764322 2333333334444466678999999999
No 346
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.43 E-value=1e-05 Score=57.26 Aligned_cols=86 Identities=19% Similarity=0.124 Sum_probs=52.8
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcC--CCCCc---cccceeeeEEEEEEEEC-CEEEEEEEecCCCcccccc------c
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDG--SFTTS---FITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRT------I 80 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~------~ 80 (160)
....-|.++|++++|||+|+|.|.+. .+... ...|.+ .+....... +....+.++||+|-..... .
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~g--i~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKG--IWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccc--eEEEeccccCCCcceEEEEecCCcCccccCchhhhh
Confidence 34567999999999999999999987 55422 122233 232222221 2236899999999543222 1
Q ss_pred chhhccC--CcEEEEEEECCCh
Q 031411 81 TTAYYRG--AMGILLVYDVTDE 100 (160)
Q Consensus 81 ~~~~~~~--~~~~i~v~d~~~~ 100 (160)
....+.. ++++|+..+....
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHHhCEEEEeccCccc
Confidence 2222333 7788877776643
No 347
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.42 E-value=2.1e-06 Score=59.93 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
....|.++|..|+|||||++++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999875
No 348
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=8.7e-07 Score=66.03 Aligned_cols=141 Identities=16% Similarity=0.205 Sum_probs=82.2
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccc-----------------------cceeeeEEEEEEEECC-----
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-----------------------TTIGIDFKIRTIELDG----- 61 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~----- 61 (160)
..+--.+++.++|...+|||||+-.|..+..+.... ...+++.....+.+++
T Consensus 162 ~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taE 241 (591)
T KOG1143|consen 162 SQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAE 241 (591)
T ss_pred cccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHH
Confidence 444567999999999999999999887654432200 0011111111111111
Q ss_pred -----EEEEEEEecCCCcccccccchhhccC--CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 62 -----KRIKLQIWDTAGQERFRTITTAYYRG--AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 62 -----~~~~~~~~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.+--++|+|+.|+.+|.......+.+ .|..++++++...-.. ..++-+..+.. -++|++++.+|+|+..
T Consensus 242 Ei~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~A---L~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 242 EIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAA---LNIPFFVLVTKMDLVD 317 (591)
T ss_pred HHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHH---hCCCeEEEEEeecccc
Confidence 11257899999999987766555543 5788888888653221 11111122222 2889999999999963
Q ss_pred Cc-cCCChhHHHHHhhhcceE
Q 031411 135 SK-REAPFCLHETILLTVQVH 154 (160)
Q Consensus 135 ~~-~~~~~~~~~~~~~~~~~~ 154 (160)
.. ......+...+....+|.
T Consensus 318 ~~~~~~tv~~l~nll~~~Gc~ 338 (591)
T KOG1143|consen 318 RQGLKKTVKDLSNLLAKAGCT 338 (591)
T ss_pred chhHHHHHHHHHHHHhhcCcc
Confidence 32 234445555555555554
No 349
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.38 E-value=6.5e-07 Score=63.69 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=52.4
Q ss_pred EEEEEEEecCCCcccccccchhhccCCcEEEEEEECCCh-------hhHHHHHH---HHHHHHHhc-CCCCcEEEEEeCC
Q 031411 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE-------SSFNNIRN---WIRNIEQHA-SDNVNKILVGNKA 130 (160)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-------~~~~~~~~---~~~~~~~~~-~~~~pi~vv~~K~ 130 (160)
..+.|.++|.+||..-..-|...+.++-++++|+..+.. .+-.++.+ .+..+.++. -..+.+++..||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 347899999999998899999999999999999988652 12223333 333343322 2467899999999
Q ss_pred CCC
Q 031411 131 DMD 133 (160)
Q Consensus 131 Dl~ 133 (160)
|+-
T Consensus 280 Dll 282 (379)
T KOG0099|consen 280 DLL 282 (379)
T ss_pred HHH
Confidence 974
No 350
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.37 E-value=4.9e-07 Score=60.36 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
-.++++|++|||||||+|.|...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37899999999999999999975
No 351
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.35 E-value=1e-07 Score=66.62 Aligned_cols=74 Identities=22% Similarity=0.295 Sum_probs=49.0
Q ss_pred CCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhcC-CCCcEEEEEe
Q 031411 60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQHAS-DNVNKILVGN 128 (160)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~ 128 (160)
+-..+.|.+.|.+|+..-...|..+++++-.+++++..+. +...++-+..+..+..+.. .+.++++..|
T Consensus 195 dl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLN 274 (359)
T KOG0085|consen 195 DLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN 274 (359)
T ss_pred chhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEec
Confidence 3344667789999988777788888887766666555442 2233333445555544432 4779999999
Q ss_pred CCCCC
Q 031411 129 KADMD 133 (160)
Q Consensus 129 K~Dl~ 133 (160)
|.|+.
T Consensus 275 KkDlL 279 (359)
T KOG0085|consen 275 KKDLL 279 (359)
T ss_pred hhhhh
Confidence 99974
No 352
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=3.1e-06 Score=66.23 Aligned_cols=113 Identities=15% Similarity=0.176 Sum_probs=70.8
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
..+.+..+=+.++|++|+||||||..|...-.........+ ....+.++..+++|.++|. ....+. ...+-+
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-----PiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIa 134 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-----PITVVSGKTRRITFLECPS--DLHQMI-DVAKIA 134 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-----ceEEeecceeEEEEEeChH--HHHHHH-hHHHhh
Confidence 34555667888999999999999998886433222111111 1123356667899999983 233322 344668
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMD 133 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-i~vv~~K~Dl~ 133 (160)
|++++++|.+-.-..+.+ ++++-+..+ +.| ++-|+|..|+.
T Consensus 135 DLVlLlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlf 176 (1077)
T COG5192 135 DLVLLLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLF 176 (1077)
T ss_pred heeEEEeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccc
Confidence 999999999754333332 344444433 444 56678999996
No 353
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.34 E-value=3.7e-06 Score=56.28 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~ 38 (160)
+++.|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999988764
No 354
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.33 E-value=1.1e-05 Score=62.97 Aligned_cols=81 Identities=22% Similarity=0.306 Sum_probs=52.5
Q ss_pred EEEEEecCCCc-------------ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHH-HHHhcCCCCcEEEEEeC
Q 031411 64 IKLQIWDTAGQ-------------ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVNKILVGNK 129 (160)
Q Consensus 64 ~~~~~~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~pi~vv~~K 129 (160)
-+..+.|+||. +..-.+...++.+.+++|+|+.-.. .+.-+..... +.+..+.+..-|+|.||
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 36789999992 2344556788999999999996543 2222222222 34455667788999999
Q ss_pred CCCCCCccCCChhHHHHHh
Q 031411 130 ADMDESKREAPFCLHETIL 148 (160)
Q Consensus 130 ~Dl~~~~~~~~~~~~~~~~ 148 (160)
.|+.+ ......+.++++.
T Consensus 489 VDlAE-knlA~PdRI~kIl 506 (980)
T KOG0447|consen 489 VDLAE-KNVASPSRIQQII 506 (980)
T ss_pred cchhh-hccCCHHHHHHHH
Confidence 99973 3344555555554
No 355
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.31 E-value=1.7e-06 Score=65.39 Aligned_cols=55 Identities=29% Similarity=0.397 Sum_probs=36.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC------CCccccceeeeEEEEEEEECCEEEEEEEecCCCcc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 75 (160)
.++.++|.+|+|||||+|.|.+... ..+..+..+.+ ...+..++ .+.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~--~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD--LIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee--EEEEEeCC---CCEEEECCCCC
Confidence 4899999999999999999997432 22233333322 23344433 35799999943
No 356
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.30 E-value=6.5e-06 Score=60.74 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=37.6
Q ss_pred EEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
+.+.|.||+|..... ...+..+|.++++.... +-+.+......+. ..|.++++||+|+.+.
T Consensus 127 ~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 127 YDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGLM-----EIADIYVVNKADGEGA 187 (300)
T ss_pred CCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHHh-----hhccEEEEEcccccch
Confidence 678899999853222 23456678888775443 2233333333332 5677999999999743
No 357
>PRK12288 GTPase RsgA; Reviewed
Probab=98.28 E-value=2.1e-06 Score=64.40 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++|+|.+|+|||||+|+|+...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc
Confidence 37899999999999999999753
No 358
>PRK13796 GTPase YqeH; Provisional
Probab=98.26 E-value=1.8e-06 Score=65.37 Aligned_cols=54 Identities=28% Similarity=0.316 Sum_probs=35.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC------CccccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFT------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
.++.++|.+|+|||||||+|...... .+..+.++ .....+..++. ..++||||-
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT--~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTT--LDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcc--ceeEEEEcCCC---cEEEECCCc
Confidence 47999999999999999999854311 12223333 22334444432 479999994
No 359
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=2.9e-06 Score=71.74 Aligned_cols=111 Identities=23% Similarity=0.259 Sum_probs=68.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC-CCCCc----cccceeeeEEEEEEEECCEEEEEEEecCCCcc--------cccccchhh
Q 031411 18 LLLIGDSGVGKSCLLLRFSDG-SFTTS----FITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAY 84 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~ 84 (160)
.+|+|++|+||||++..---+ .+... .....+ .....+.+.+ +-.++||.|.. .....|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g--T~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG--TRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCC--CcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHH
Confidence 589999999999998644321 11111 011111 1112244444 46789999932 122234333
Q ss_pred ---------ccCCcEEEEEEECCCh-----hh----HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 85 ---------YRGAMGILLVYDVTDE-----SS----FNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 85 ---------~~~~~~~i~v~d~~~~-----~~----~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
.+-.|++|+.+|+.+- .. ...++.-++++.....-..|++|++||.|+.
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLL 269 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccc
Confidence 2457999999999751 11 2345667788877777789999999999985
No 360
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.20 E-value=3.6e-06 Score=60.34 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|.+|+|||||+|.|....
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 78999999999999999999753
No 361
>PRK12289 GTPase RsgA; Reviewed
Probab=98.19 E-value=3.2e-06 Score=63.51 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++|+|++|+|||||||.|....
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 37999999999999999999643
No 362
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.17 E-value=1.3e-05 Score=54.25 Aligned_cols=108 Identities=24% Similarity=0.354 Sum_probs=55.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecC-CCcc---------------c----
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT-AGQE---------------R---- 76 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~g~~---------------~---- 76 (160)
||++.|++|+||||+++++....-. ...+..+ +.+..+..++.+.-|.+.|. .|.. +
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~-~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKK-KGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHH-TCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhc-cCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 6899999999999999998863211 1112222 44455556666666777776 3311 0
Q ss_pred ---cccc----chhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 031411 77 ---FRTI----TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130 (160)
Q Consensus 77 ---~~~~----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~ 130 (160)
+... ....+..++ ++++|--.+..+ ....|.+.+.....++.|++.+..+.
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~ 135 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKR 135 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 1111 111123445 566776543221 12234555555445678888887766
No 363
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.13 E-value=1.5e-05 Score=56.81 Aligned_cols=92 Identities=23% Similarity=0.196 Sum_probs=60.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccc-------ccccchhhccC
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRTITTAYYRG 87 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~ 87 (160)
..++.++|-|++||||++..+.+-..+.......++........+++ -.+++.|+||.-. -..+..+..+-
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeec
Confidence 35899999999999999999987544322222222222222333444 4688999999311 11223445577
Q ss_pred CcEEEEEEECCChhhHHHHHH
Q 031411 88 AMGILLVYDVTDESSFNNIRN 108 (160)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~ 108 (160)
|+++++|.|...|-+...+.+
T Consensus 137 cnli~~vld~~kp~~hk~~ie 157 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKIIE 157 (358)
T ss_pred ccEEEEEeeccCcccHHHHHH
Confidence 999999999999888766543
No 364
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=8.1e-06 Score=64.16 Aligned_cols=115 Identities=20% Similarity=0.137 Sum_probs=77.9
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCC-----CCc-------------cccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF-----TTS-------------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~-----~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
+..-+|.+.-.-.+||||+-++++.... .+. .....++..-...+.+. .++++++|||||
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~--~~~iNiIDTPGH 114 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR--DYRINIIDTPGH 114 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--cceeEEecCCCc
Confidence 3456889999999999999998874211 111 11112221111122222 578999999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
-.+.-.....++-.|++++++++-..-.-+...-|.+.- + -++|.+...||+|.-
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~-r---y~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMK-R---YNVPRICFINKMDRM 169 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHH-h---cCCCeEEEEehhhhc
Confidence 999988899999999999999987643333444444332 2 378999999999975
No 365
>PRK00098 GTPase RsgA; Reviewed
Probab=98.05 E-value=1.1e-05 Score=59.55 Aligned_cols=24 Identities=42% Similarity=0.499 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~ 39 (160)
..++++|++|+|||||+|.|.+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999998754
No 366
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.05 E-value=1.1e-05 Score=62.26 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=41.6
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
..+...+.|.++|-|||||||+||.|.+.+.. .+..|..+.++. .+.... .+.+.|+||-
T Consensus 309 ~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQ--Ti~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 309 ERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQ--TIFLSP---SVCLCDCPGL 369 (562)
T ss_pred cCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeE--EEEcCC---CceecCCCCc
Confidence 33444899999999999999999999987643 334444443333 333333 4678999993
No 367
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.03 E-value=1.3e-05 Score=58.86 Aligned_cols=60 Identities=27% Similarity=0.253 Sum_probs=35.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCcc-cc-----ceeeeEEEEEEEECCEEEEEEEecCCCccccc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF-IT-----TIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (160)
-.++++|++|+|||||+|.|.+....... .+ ..........+...+. ..++|+||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 47999999999999999999975432111 00 0011112223333321 2589999975543
No 368
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.02 E-value=1e-05 Score=58.93 Aligned_cols=59 Identities=25% Similarity=0.268 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC------CCccccceeeeEEEEEEEECCEEEEEEEecCCCccccc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 78 (160)
..+++|++|+|||||+|+|..... .+........+.....+.+++.. .+.||||-..+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 678999999999999999985221 11111111112233344443211 579999965443
No 369
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.97 E-value=2e-05 Score=57.86 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=40.4
Q ss_pred hccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 84 YYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.+.++|.+++|+|+.++. ++..+.+|+..+.. .++|+++++||+||.+
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~ 123 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLD 123 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCC
Confidence 378899999999999887 88888888876654 3689999999999963
No 370
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=9.4e-05 Score=52.64 Aligned_cols=114 Identities=20% Similarity=0.321 Sum_probs=67.5
Q ss_pred eEEEEEEcCCCC--CHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEE----EEEEecCCCcccccccchhhccCC
Q 031411 15 LIKLLLIGDSGV--GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRI----KLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 15 ~~~i~v~G~~~~--GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
+..++++|-.|+ ||.+++.+|....+..+..+.....+ ..++++++-+ .+.+.-.- +.+-........-.
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~--hgwtid~kyysadi~lcishic--de~~lpn~~~a~pl 79 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEF--HGWTIDNKYYSADINLCISHIC--DEKFLPNAEIAEPL 79 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceee--eceEecceeeecceeEEeeccc--chhccCCcccccce
Confidence 347899999998 99999999998877655444433222 2334443211 22221110 00110111112345
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.+++.+||.+....+..+..|+....-..- + -.+.++||.|..+
T Consensus 80 ~a~vmvfdlse~s~l~alqdwl~htdinsf-d-illcignkvdrvp 123 (418)
T KOG4273|consen 80 QAFVMVFDLSEKSGLDALQDWLPHTDINSF-D-ILLCIGNKVDRVP 123 (418)
T ss_pred eeEEEEEeccchhhhHHHHhhccccccccc-h-hheeccccccccc
Confidence 688999999999999999999875433211 1 2455689998643
No 371
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.92 E-value=0.00011 Score=56.66 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHh
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFS 36 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~ 36 (160)
..-|+++|++|+||||++..|.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999998885
No 372
>PRK13695 putative NTPase; Provisional
Probab=97.91 E-value=0.00015 Score=49.15 Aligned_cols=22 Identities=36% Similarity=0.768 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
+++++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998654
No 373
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.91 E-value=3.5e-05 Score=53.03 Aligned_cols=52 Identities=23% Similarity=0.243 Sum_probs=37.0
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
+..++..+++++|++++|+|+.++.. .|...+.... .+.|+++|+||+|+.+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-GNNPVILVGNKIDLLP 75 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-CCCcEEEEEEchhcCC
Confidence 46667788899999999999987531 1222232222 3679999999999963
No 374
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.89 E-value=0.00013 Score=54.25 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
=.++.|.-|+|||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4678899999999999999853
No 375
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.88 E-value=8.6e-05 Score=40.59 Aligned_cols=43 Identities=28% Similarity=0.322 Sum_probs=30.0
Q ss_pred CcEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 031411 88 AMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131 (160)
Q Consensus 88 ~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~D 131 (160)
.+++++++|.+.. .+++.-...+.++..... +.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 5789999999874 556777778888888776 789999999998
No 376
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.87 E-value=0.00045 Score=52.81 Aligned_cols=138 Identities=20% Similarity=0.199 Sum_probs=76.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC--------------CCccccceee----------eEEEEEEEE-CCEEEEEEE
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSF--------------TTSFITTIGI----------DFKIRTIEL-DGKRIKLQI 68 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~--------------~~~~~~~~~~----------~~~~~~~~~-~~~~~~~~~ 68 (160)
..+-|.++||-.+||||||.|+..-.. ++-+.+..+. .-....+.. ++-.+++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 447899999999999999999975211 0111111111 112234444 456788999
Q ss_pred ecCCC--------c-----cc-ccccch--------h-------hcc--CCcEEEEEEECCC----hhhHHHHH-HHHHH
Q 031411 69 WDTAG--------Q-----ER-FRTITT--------A-------YYR--GAMGILLVYDVTD----ESSFNNIR-NWIRN 112 (160)
Q Consensus 69 ~D~~g--------~-----~~-~~~~~~--------~-------~~~--~~~~~i~v~d~~~----~~~~~~~~-~~~~~ 112 (160)
.|+.| + ++ ....|. + .+. ..-++++.-|.+- ++++.... +.+.+
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 99988 0 00 111111 0 011 1235555555542 34443332 34444
Q ss_pred HHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 113 IEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 113 ~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+.. -+.|++++.|-.+= ..+...+-+.++..+|++..+.
T Consensus 176 Lk~---igKPFvillNs~~P---~s~et~~L~~eL~ekY~vpVlp 214 (492)
T PF09547_consen 176 LKE---IGKPFVILLNSTKP---YSEETQELAEELEEKYDVPVLP 214 (492)
T ss_pred HHH---hCCCEEEEEeCCCC---CCHHHHHHHHHHHHHhCCcEEE
Confidence 444 37799999997762 3444555567777777766543
No 377
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.84 E-value=1.7e-05 Score=52.76 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=35.4
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
|..++...++++|++++|+|++++..... ..+...+. ..+.|+++++||+|+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhC
Confidence 34556677788999999999987543222 11222121 2367999999999985
No 378
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.83 E-value=6.7e-05 Score=49.13 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=44.2
Q ss_pred hhhccCCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhc--ceEEEE
Q 031411 82 TAYYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTV--QVHLVI 157 (160)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~ 157 (160)
...++++|++++++|+.++.+.. .+.+|+... . .+.|+++++||+|+.++. ...+..++..+. .+.++|
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~---~~~~~~~~~~~~~~~ii~iS 78 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEE---QRKAWAEYFKKEGIVVVFFS 78 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHH---HHHHHHHHHHhcCCeEEEEE
Confidence 34678999999999998875533 444444432 1 367999999999995322 122333444333 345555
Q ss_pred ee
Q 031411 158 LK 159 (160)
Q Consensus 158 ~k 159 (160)
++
T Consensus 79 a~ 80 (141)
T cd01857 79 AL 80 (141)
T ss_pred ec
Confidence 53
No 379
>PRK00098 GTPase RsgA; Reviewed
Probab=97.82 E-value=4.3e-05 Score=56.36 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=36.2
Q ss_pred ccCCcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 85 YRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
..++|++++|+|+.++..... +.+|+..+.. .++|+++++||+|+.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLL 124 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcC
Confidence 589999999999988765444 4667666543 478999999999995
No 380
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.81 E-value=3.8e-05 Score=58.09 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=51.4
Q ss_pred cccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHH----Hhh
Q 031411 74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHET----ILL 149 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~----~~~ 149 (160)
.+.+..+...+.++++++++|+|+.+.. ..|...+.++.. +.|+++|+||+|+.+. .+..+++++ +++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k--~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPK--SVNLSKIKEWMKKRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCC--CCCHHHHHHHHHHHHH
Confidence 4567777778888999999999997643 235555555443 6799999999999632 233344443 455
Q ss_pred hcc-----eEEEEee
Q 031411 150 TVQ-----VHLVILK 159 (160)
Q Consensus 150 ~~~-----~~~~~~k 159 (160)
+++ ..++|||
T Consensus 122 ~~g~~~~~i~~vSAk 136 (360)
T TIGR03597 122 ELGLKPVDIILVSAK 136 (360)
T ss_pred HcCCCcCcEEEecCC
Confidence 554 3455554
No 381
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.81 E-value=8.7e-05 Score=48.55 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=62.7
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECC
Q 031411 19 LLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 98 (160)
Q Consensus 19 ~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (160)
+.-|..|+|||++.-.+...-.. ...+..-.+... ....-.+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 35578899999997666532110 000111111100 000111678999999753 333456788999999999875
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 99 DESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
..++..+...+..+.... ...++.++.|+.+-.
T Consensus 78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 455555555555554433 245788899998753
No 382
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.81 E-value=0.00016 Score=53.86 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~ 37 (160)
.--++++|++|+||||++..|..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35788999999999999988864
No 383
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00018 Score=54.52 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
-.++++|++|+||||++..|..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998875
No 384
>PRK12289 GTPase RsgA; Reviewed
Probab=97.75 E-value=0.00019 Score=54.08 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=40.1
Q ss_pred cccchhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 78 RTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+.+....+.++|.+++|+|+.++. ....+.+|+..+.. .++|+++|+||+||.
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv 133 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLV 133 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcC
Confidence 344455688999999999998765 44566777765532 478999999999996
No 385
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.73 E-value=0.00026 Score=45.66 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~ 39 (160)
-.+++.|++|+|||++++.+....
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 386
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.73 E-value=0.00019 Score=48.57 Aligned_cols=64 Identities=20% Similarity=0.150 Sum_probs=36.4
Q ss_pred EEEEEecCCCcccccccc----hhh--ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 64 IKLQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
..+.+.|++|........ ..+ ....+.+++|+|...... ..++...+.+... ..-++.||.|..
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~ 152 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGD 152 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCC
Confidence 457889999964322111 111 124889999999864322 2234444433222 245666999975
No 387
>PRK12288 GTPase RsgA; Reviewed
Probab=97.72 E-value=0.00016 Score=54.40 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=38.7
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
..++|.+++|++...+.++..+..|+..... .++|.++|+||+||.+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~ 164 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLD 164 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCC
Confidence 3568999999999888889999999875532 4689999999999963
No 388
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.71 E-value=3.4e-05 Score=57.98 Aligned_cols=59 Identities=22% Similarity=0.390 Sum_probs=43.2
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCC
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 73 (160)
.-+..+++.|+|-|++||||+||.|....... .....|++.....+..+. .+.|.|.||
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~-vg~~pGvT~smqeV~Ldk---~i~llDsPg 306 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACN-VGNVPGVTRSMQEVKLDK---KIRLLDSPG 306 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhcccc-CCCCccchhhhhheeccC---CceeccCCc
Confidence 34677999999999999999999999765432 122333445555666665 578999999
No 389
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.0002 Score=55.67 Aligned_cols=129 Identities=19% Similarity=0.127 Sum_probs=79.3
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCC----------------CCccccceeeeEEEEEEEE--------------CC
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIEL--------------DG 61 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~--------------~~ 61 (160)
..+.-++.++..-..|||||-..|....- ..+..+..++......+.+ ++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 34556889999999999999988853111 0111222222222221111 23
Q ss_pred EEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCCh
Q 031411 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPF 141 (160)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~ 141 (160)
..+-++++|.|||..|.....+.++-.|+.++|+|.-+.-..+.-.-.-+.+.. .-.|+ ++.||+|..--+-+...
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E---RIkPv-lv~NK~DRAlLELq~~~ 171 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE---RIKPV-LVMNKMDRALLELQLSQ 171 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh---hccce-EEeehhhHHHHhhcCCH
Confidence 357889999999999999999999999999999998775443322212222222 22354 55699996323345555
Q ss_pred hHH
Q 031411 142 CLH 144 (160)
Q Consensus 142 ~~~ 144 (160)
|+.
T Consensus 172 EeL 174 (842)
T KOG0469|consen 172 EEL 174 (842)
T ss_pred HHH
Confidence 554
No 390
>PRK08118 topology modulation protein; Reviewed
Probab=97.67 E-value=4.2e-05 Score=51.66 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
.+|+|+|++|||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999999864
No 391
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.67 E-value=4.4e-05 Score=48.45 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 392
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.64 E-value=0.00035 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=19.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~ 37 (160)
.-.|+++||+|+||||-+-.|..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAa 225 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAA 225 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 45789999999999998877764
No 393
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.64 E-value=4.4e-05 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
.||+|+|++|+||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
No 394
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.63 E-value=0.00036 Score=43.04 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=50.6
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEE
Q 031411 18 LLLIG-DSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (160)
Q Consensus 18 i~v~G-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (160)
|.+.| ..|+||||+...+...-.. ...+.. .+..+. .+.+.++|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl-------~~d~d~-~~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVL-------LIDLDP-QYDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEE-------EEeCCC-CCCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence 56666 5689999998766542211 101111 111221 16789999998642 223467788999999887
Q ss_pred CCChhhHHHHHHHHH
Q 031411 97 VTDESSFNNIRNWIR 111 (160)
Q Consensus 97 ~~~~~~~~~~~~~~~ 111 (160)
.+ ..++..+.+++.
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 74 566777766665
No 395
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.62 E-value=5.1e-05 Score=49.52 Aligned_cols=20 Identities=40% Similarity=0.682 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 031411 18 LLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~ 37 (160)
|+++|++||||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999985
No 396
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.61 E-value=7.6e-05 Score=56.05 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=22.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSF 40 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~ 40 (160)
-.+++.++|+-.+|||||+-.|..+..
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeL 158 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGEL 158 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeeccc
Confidence 458999999999999999988875443
No 397
>PRK07261 topology modulation protein; Provisional
Probab=97.60 E-value=5.9e-05 Score=51.14 Aligned_cols=22 Identities=45% Similarity=0.632 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
+|+|+|++|+|||||+..|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998753
No 398
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.60 E-value=0.00037 Score=50.79 Aligned_cols=64 Identities=20% Similarity=0.182 Sum_probs=36.6
Q ss_pred EEEEEecCCCcccccccch-------hhc-----cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 031411 64 IKLQIWDTAGQERFRTITT-------AYY-----RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131 (160)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~-------~~~-----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~D 131 (160)
+.+.++||+|....+...- ... ...|..++|+|++.. .+.+. +...+.+... +.-++.||.|
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~~---~~g~IlTKlD 228 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAVG---LTGIILTKLD 228 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhCC---CCEEEEEccC
Confidence 6789999999654322211 011 237899999999753 22222 2222222211 3567789999
Q ss_pred CC
Q 031411 132 MD 133 (160)
Q Consensus 132 l~ 133 (160)
-.
T Consensus 229 e~ 230 (272)
T TIGR00064 229 GT 230 (272)
T ss_pred CC
Confidence 75
No 399
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00061 Score=53.77 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~ 37 (160)
.-.++|+|++|+||||++..|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999988864
No 400
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.54 E-value=0.0069 Score=40.85 Aligned_cols=123 Identities=11% Similarity=0.051 Sum_probs=85.5
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcE
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (160)
+..+...|+++|..+.++..|.+.+...+.. +......... .-.|... .. .=...|.
T Consensus 11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~l~Vh~a~s-------LPLp~e~--~~----lRprIDl 67 (176)
T PF11111_consen 11 PELNTATILLVGTEEALLQQLAEAMLEEDKE----------FKLKVHLAKS-------LPLPSEN--NN----LRPRIDL 67 (176)
T ss_pred CCcceeEEEEecccHHHHHHHHHHHHhhccc----------eeEEEEEecc-------CCCcccc--cC----CCceeEE
Confidence 3445789999999999999999999963211 1111111111 1122111 11 1236899
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEEe
Q 031411 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVIL 158 (160)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (160)
++|++|.....+++.++.-+..+.....- -.++++.+-.... +...+...++.+++..|++.++++
T Consensus 68 IVFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~-~~~sv~~~~V~kla~~y~~plL~~ 133 (176)
T PF11111_consen 68 IVFVINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRE-SHCSVHPNEVRKLAATYNSPLLFA 133 (176)
T ss_pred EEEEEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcc-cccccCHHHHHHHHHHhCCCEEEe
Confidence 99999999999999999888888654432 2577777777665 667899999999999999988765
No 401
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.53 E-value=0.00011 Score=41.09 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
..+|.|+.|+||||+++.+.---
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999887543
No 402
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.53 E-value=0.0012 Score=39.63 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=46.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccccccc-chhhccCCcEEEEEEE
Q 031411 18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-TTAYYRGAMGILLVYD 96 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~i~v~d 96 (160)
+++.|..|+||||+...+...-.... .. ....+ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~---------v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG-KR---------VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-Ce---------EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 67889999999999988875321100 01 11111 5789999986433221 1455668899998887
Q ss_pred CCChhhHHHHHH
Q 031411 97 VTDESSFNNIRN 108 (160)
Q Consensus 97 ~~~~~~~~~~~~ 108 (160)
... .+......
T Consensus 68 ~~~-~~~~~~~~ 78 (99)
T cd01983 68 PEA-LAVLGARR 78 (99)
T ss_pred Cch-hhHHHHHH
Confidence 754 33444433
No 403
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.53 E-value=0.00021 Score=52.32 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=39.7
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCC------CccccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
.+..+..+++.|+|-||+|||||+|.+...... ....+..+.... ..+.+.+. -.+.+.||||.
T Consensus 137 irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~-~~iri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 137 IRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVS-ERIRISHR-PPVYLIDTPGI 206 (335)
T ss_pred hcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeeh-hheEeccC-CceEEecCCCc
Confidence 344567799999999999999999988753322 112222222111 12333332 24788999993
No 404
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.50 E-value=0.00021 Score=47.63 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=32.5
Q ss_pred hccCCcEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 84 YYRGAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
.++++|++++|+|+.++.. .+.+.+++. .. ..+.|++++.||+|+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~-~~~~p~ilVlNKiDl~ 52 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KE-KPHKHLIFVLNKCDLV 52 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---hc-cCCCCEEEEEEchhcC
Confidence 5778999999999988632 233333332 22 3358999999999995
No 405
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00068 Score=49.52 Aligned_cols=59 Identities=25% Similarity=0.209 Sum_probs=37.9
Q ss_pred EEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+.+.+++|.|--+.+. ....-+|.++++.-..-.+..+-++.-+.++. -+++.||.|..
T Consensus 144 ~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINKaD~~ 202 (323)
T COG1703 144 YDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINKADRK 202 (323)
T ss_pred CCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEeccChh
Confidence 4677788887432222 23345788888777766676666665554443 37788999964
No 406
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.46 E-value=0.00053 Score=44.49 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
-|++.|+.|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998753
No 407
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00045 Score=49.12 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
-+.++|++|||||||++-+.+-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
No 408
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.45 E-value=0.0035 Score=46.81 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++-|-=|||||||++.++.+.
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~ 25 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANR 25 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhcc
Confidence 5778999999999999998643
No 409
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.44 E-value=0.00015 Score=41.54 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~ 38 (160)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999875
No 410
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.42 E-value=9.5e-05 Score=49.56 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 411
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00018 Score=50.20 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|||||||++++-.-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 58999999999999999998644
No 412
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.39 E-value=0.00016 Score=46.83 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999888754
No 413
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.39 E-value=0.0013 Score=41.00 Aligned_cols=100 Identities=16% Similarity=0.098 Sum_probs=58.6
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCCh
Q 031411 21 IGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE 100 (160)
Q Consensus 21 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (160)
=+..|+||||+...|...-.........-.+.. ... ...+.+.|+|+... ......+..+|.++++.+.+ .
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~-~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~ 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQF-GDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQD-L 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCC-CCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC-h
Confidence 355779999988776543211101111111111 111 11689999998642 23345678899999988764 5
Q ss_pred hhHHHHHHHHHHHHHhcCC-CCcEEEEEeC
Q 031411 101 SSFNNIRNWIRNIEQHASD-NVNKILVGNK 129 (160)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~-~~pi~vv~~K 129 (160)
.+...+..+++.+.+.... ...+.+++|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 6677777777777654432 3456676664
No 414
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=2.3e-05 Score=57.17 Aligned_cols=133 Identities=15% Similarity=0.137 Sum_probs=72.3
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCC---CCCccccceeeeEEEE---EEE--------------------------E
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIR---TIE--------------------------L 59 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~---~~~--------------------------~ 59 (160)
+...++|.-+|.-..||||+...+.+-. |..+-.+..++...+. .+. .
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 4467999999999999999999887632 2222222222111000 000 0
Q ss_pred ---CC---EEEEEEEecCCCcccccccchhhccCCcEEEEEEECCC----hhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 031411 60 ---DG---KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKILVGNK 129 (160)
Q Consensus 60 ---~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K 129 (160)
.+ -..++.|.|+|||+-.-...-....-.|++++++..+. |.+-+.+ ..+.-. .=..++++.||
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL----aaveiM--~LkhiiilQNK 188 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL----AAVEIM--KLKHIIILQNK 188 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH----HHHHHh--hhceEEEEech
Confidence 00 01367789999987443322222233567777776664 2333333 222111 12368999999
Q ss_pred CCCCCCcc-CCChhHHHHHhhh
Q 031411 130 ADMDESKR-EAPFCLHETILLT 150 (160)
Q Consensus 130 ~Dl~~~~~-~~~~~~~~~~~~~ 150 (160)
.||..... ....+++++|.+.
T Consensus 189 iDli~e~~A~eq~e~I~kFi~~ 210 (466)
T KOG0466|consen 189 IDLIKESQALEQHEQIQKFIQG 210 (466)
T ss_pred hhhhhHHHHHHHHHHHHHHHhc
Confidence 99963222 3445667777653
No 415
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.36 E-value=0.00032 Score=46.62 Aligned_cols=42 Identities=31% Similarity=0.161 Sum_probs=28.4
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
|++++|+|+.++.+.+. .++.. ......+.|+++++||+|+.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~ 42 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLV 42 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcC
Confidence 68999999988755432 23321 11122468999999999995
No 416
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.36 E-value=0.00093 Score=49.01 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=59.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCc-------------------
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ------------------- 74 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~------------------- 74 (160)
+..+++++|++|.|||++++++........ .... ..+.+...+.|..
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDA-------------ERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCCC-------------ccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 345799999999999999999998653321 1111 1123344444431
Q ss_pred -----ccccccchhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcC-CCCcEEEEEeC
Q 031411 75 -----ERFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHAS-DNVNKILVGNK 129 (160)
Q Consensus 75 -----~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K 129 (160)
.....+....++...+=++++|--. ..+....+..++.+..... -.+|++.+|++
T Consensus 126 ~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 126 PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 1112223356677888888888643 1223344445555544332 47899999884
No 417
>PRK06217 hypothetical protein; Validated
Probab=97.33 E-value=0.00022 Score=48.82 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
.+|+|+|.+||||||+...|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 418
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.32 E-value=0.00027 Score=49.83 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~ 40 (160)
-+.++|++|||||||++.+..-..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 478999999999999999987543
No 419
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.32 E-value=0.0036 Score=47.16 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
=.++.|.-|+|||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3678899999999999999853
No 420
>PF05729 NACHT: NACHT domain
Probab=97.30 E-value=0.00065 Score=45.12 Aligned_cols=21 Identities=38% Similarity=0.677 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~ 38 (160)
++|.|++|+|||+++..+...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999988753
No 421
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.30 E-value=0.00021 Score=51.32 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
-++++|++|||||||++.+.+-
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999873
No 422
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.30 E-value=0.00027 Score=45.18 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFT 41 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~ 41 (160)
-.++++|++|+|||+++..+......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 37899999999999999999876543
No 423
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.30 E-value=0.00024 Score=45.50 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~~ 39 (160)
|++.|++|+|||++++.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998753
No 424
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.00044 Score=52.36 Aligned_cols=127 Identities=15% Similarity=0.076 Sum_probs=73.4
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCC--CC-----------------------------CccccceeeeEEEEEEE
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGS--FT-----------------------------TSFITTIGIDFKIRTIE 58 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~ 58 (160)
+.....++++++|.-.+||||+-..+.... .. ++.....+.+.....+.
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 344567899999999999999876664310 00 00111111111111222
Q ss_pred ECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCC---hhhHHHHHHHHHH-HHHhcCCCCcEEEEEeCCCCCC
Q 031411 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRN-IEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 59 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.. ..+|++.|.|||..|-........++|+.++++++.. ...|++--+.-.. +...-..-...+++.||+|-+.
T Consensus 154 te--~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 154 TE--NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 231 (501)
T ss_pred ec--ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCc
Confidence 22 2478999999998887766666778999999998843 2334433221111 1111112346788899999764
Q ss_pred CccC
Q 031411 135 SKRE 138 (160)
Q Consensus 135 ~~~~ 138 (160)
..|.
T Consensus 232 vnWs 235 (501)
T KOG0459|consen 232 VNWS 235 (501)
T ss_pred cCcc
Confidence 4443
No 425
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.29 E-value=0.00019 Score=48.60 Aligned_cols=57 Identities=21% Similarity=0.070 Sum_probs=37.3
Q ss_pred CCCcc-cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 71 TAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 71 ~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+||+. +........++++|++++++|++++...... .++. .. .+.|++++.||+|+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~----~~-~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEK----IL-GNKPRIIVLNKADLA 59 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHh----Hh-cCCCEEEEEehhhcC
Confidence 45643 3444456678899999999999875432211 1111 11 256899999999995
No 426
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.28 E-value=0.00026 Score=46.24 Aligned_cols=21 Identities=52% Similarity=0.775 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~ 38 (160)
|+++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 427
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.27 E-value=0.00021 Score=52.14 Aligned_cols=57 Identities=25% Similarity=0.213 Sum_probs=37.9
Q ss_pred CCCcc-cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 71 TAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 71 ~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+|||. +........++.+|++++|+|+..+.+.+. .++.... .+.|+++|.||+|+.
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLA 61 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccC
Confidence 57764 334445667889999999999987644322 1111111 257999999999995
No 428
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.27 E-value=0.00028 Score=48.40 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.++|+|++|+||||+++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999764
No 429
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.27 E-value=0.00071 Score=43.27 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=31.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCC--ccccceeeeEEEEEEEEC-CEEEEEEEecCCCcccc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTT--SFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERF 77 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~ 77 (160)
--|++-|+=|+|||||.+.+...--.. -..||-.+ . ...... ..-+++-++-+.+.+..
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l--~-~~Y~~~~~~l~H~DLYRl~~~~e~ 77 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSL--V-NEYEGGNIPLYHFDLYRLEDPEEL 77 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTS--E-EEEEETTEEEEEEE-TT-SSTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEE--E-EEecCCCceEEEeeccccCCHHHH
Confidence 358999999999999999888643222 22233221 1 122212 23356667766654443
No 430
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.26 E-value=0.00029 Score=46.23 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.|.|+|+.++|||||+..|.+.-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998743
No 431
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.26 E-value=0.00026 Score=48.13 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.++|+|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998764
No 432
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.25 E-value=0.00029 Score=44.90 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~ 38 (160)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999864
No 433
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.22 E-value=0.00031 Score=47.74 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
-|+|+|++||||||+++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999874
No 434
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.22 E-value=0.0025 Score=49.52 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=32.6
Q ss_pred cccchhhccCCcEEEEEEECCChhh---HHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 031411 78 RTITTAYYRGAMGILLVYDVTDESS---FNNIRNWIRNIEQHASDNVNKILVGNKAD 131 (160)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~pi~vv~~K~D 131 (160)
-.+....+++++++|+ | .|.+ ..++.+.+..+.+....+..|+++-+|.+
T Consensus 149 VEIlKaLyr~a~iLIL--D--EPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 149 VEILKALYRGARLLIL--D--EPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHHHHhcCCCEEEE--c--CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 3345567788888775 3 2322 35666666666666666888999888865
No 435
>PRK14530 adenylate kinase; Provisional
Probab=97.22 E-value=0.00032 Score=49.27 Aligned_cols=21 Identities=29% Similarity=0.631 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
+|+|+|++||||||+.+.|..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999964
No 436
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.21 E-value=0.0033 Score=42.69 Aligned_cols=85 Identities=19% Similarity=0.135 Sum_probs=59.4
Q ss_pred EEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCCh
Q 031411 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPF 141 (160)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~ 141 (160)
..+.+.++|+|+... ......+..+|.+++++..+ ..+...+..++..+.+. +.|+.++.|+.|... ...
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~----~~~ 160 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF---GIPVGVVINKYDLND----EIA 160 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc----chH
Confidence 346899999997542 23445678899999999886 44666666666665543 567899999999742 234
Q ss_pred hHHHHHhhhcceEEE
Q 031411 142 CLHETILLTVQVHLV 156 (160)
Q Consensus 142 ~~~~~~~~~~~~~~~ 156 (160)
++++++..+.++.++
T Consensus 161 ~~~~~~~~~~~~~vl 175 (179)
T cd03110 161 EEIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHHHcCCCeE
Confidence 567778888776544
No 437
>PRK03839 putative kinase; Provisional
Probab=97.21 E-value=0.00031 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
+|+++|.+||||||+...|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
No 438
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.20 E-value=0.00031 Score=48.58 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~ 38 (160)
|+|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999763
No 439
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.19 E-value=0.0004 Score=47.35 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 031411 17 KLLLIGDSGVGKSCLLLRFS 36 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~ 36 (160)
.++++|++|+|||||++.+.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999999886
No 440
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.18 E-value=0.00053 Score=47.85 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
...-|+++|++|||||||++.|.+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999975
No 441
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.18 E-value=0.0005 Score=46.90 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 78999999999999999998754
No 442
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.18 E-value=0.0051 Score=47.66 Aligned_cols=64 Identities=23% Similarity=0.169 Sum_probs=35.3
Q ss_pred EEEEEecCCCcccccccchh------hccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 64 IKLQIWDTAGQERFRTITTA------YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+.+.++||+|....+...-. ..-..+.+++|+|+.... ....+...+....+ ..-++.||.|-.
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v~---i~giIlTKlD~~ 252 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERLG---LTGVVLTKLDGD 252 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhCC---CCEEEEeCccCc
Confidence 56899999995433221111 123577889999986532 33333333332222 235557999953
No 443
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.00034 Score=52.23 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~~ 39 (160)
++++||+|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998743
No 444
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.17 E-value=0.00063 Score=47.51 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=22.6
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcC
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~ 38 (160)
+.....-|+|+|++|||||||++.|...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3344567889999999999999999753
No 445
>PRK14532 adenylate kinase; Provisional
Probab=97.16 E-value=0.0004 Score=47.65 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
+|+++|++||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999975
No 446
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.16 E-value=0.00043 Score=47.52 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~ 39 (160)
-.++++|++|+||||+++.+.+-.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999999988643
No 447
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.16 E-value=0.00042 Score=48.61 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 68999999999999999998753
No 448
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.15 E-value=0.00042 Score=45.10 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988763
No 449
>PRK10646 ADP-binding protein; Provisional
Probab=97.15 E-value=0.0029 Score=42.06 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
-|++-|+=|+|||||.+.+...-
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998643
No 450
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.15 E-value=0.00039 Score=47.44 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
.-|+++|++||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999973
No 451
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.15 E-value=0.00042 Score=47.54 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~ 37 (160)
.++|.+.|++|||||+|+.++..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~ 35 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLR 35 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHH
Confidence 68999999999999999998765
No 452
>PRK14531 adenylate kinase; Provisional
Probab=97.14 E-value=0.00046 Score=47.24 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
.+|+++|+|||||||+...|..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999865
No 453
>PRK13949 shikimate kinase; Provisional
Probab=97.11 E-value=0.00049 Score=46.56 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
+|+|+|++|+||||+...|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998875
No 454
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.11 E-value=0.0005 Score=47.99 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 455
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.10 E-value=0.0005 Score=49.04 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.4
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcC
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~ 38 (160)
+..++++|+|++|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34589999999999999999888864
No 456
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.10 E-value=0.00051 Score=48.15 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999753
No 457
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.10 E-value=0.00053 Score=47.13 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 458
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.10 E-value=0.00042 Score=48.93 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 031411 18 LLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~ 37 (160)
|.+.|++|||||||++.|.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 67999999999999998875
No 459
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.10 E-value=0.00052 Score=42.78 Aligned_cols=21 Identities=43% Similarity=0.776 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHh
Q 031411 16 IKLLLIGDSGVGKSCLLLRFS 36 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~ 36 (160)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 358999999999999999986
No 460
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.09 E-value=0.0007 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 461
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.0012 Score=46.26 Aligned_cols=22 Identities=45% Similarity=0.496 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
-..++||+|||||||++++-+-
T Consensus 35 VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhh
Confidence 3579999999999999988753
No 462
>PRK02496 adk adenylate kinase; Provisional
Probab=97.09 E-value=0.0006 Score=46.61 Aligned_cols=22 Identities=23% Similarity=0.595 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
.+++|+|++||||||+...|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999875
No 463
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.08 E-value=0.00055 Score=47.89 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 464
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.00043 Score=45.54 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.5
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
..+.+|+|.|-||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 4567999999999999999999974
No 465
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.08 E-value=0.00056 Score=47.85 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 466
>PRK08233 hypothetical protein; Provisional
Probab=97.08 E-value=0.00051 Score=46.66 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
.-|+|.|.+|||||||.+.|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 56788999999999999999853
No 467
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.08 E-value=0.0025 Score=44.21 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~~ 39 (160)
|+++|++||||||+++.+.+..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887643
No 468
>PRK01889 GTPase RsgA; Reviewed
Probab=97.07 E-value=0.00065 Score=51.41 Aligned_cols=54 Identities=26% Similarity=0.254 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc------CCCCCccccceeeeEEEEEEEECCEEEEEEEecCCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD------GSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 73 (160)
+++++|.+|+|||||+|.|.+ +......................+ ...++|+||
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~---~~~l~DtpG 256 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPS---GGLLIDTPG 256 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecC---CCeecCCCc
No 469
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.07 E-value=0.00077 Score=46.84 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.+.++|++|+|||||++.+.+-.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 470
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.07 E-value=0.00064 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
....|+|.|++|||||||++.|..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998875
No 471
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.07 E-value=0.00046 Score=51.89 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=23.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCC
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~ 39 (160)
...+|+|+|++|||||||++.|...-
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHccc
Confidence 45789999999999999999998753
No 472
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.00076 Score=47.94 Aligned_cols=23 Identities=43% Similarity=0.434 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999754
No 473
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.00051 Score=47.97 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998743
No 474
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.00061 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999854
No 475
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.00054 Score=49.11 Aligned_cols=21 Identities=43% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
-+.++||.|+|||||++.+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999998
No 476
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.06 E-value=0.00077 Score=47.30 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999754
No 477
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.00061 Score=47.94 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998754
No 478
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.05 E-value=0.00049 Score=47.26 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
+|+|+|++||||||+...|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 479
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.05 E-value=0.00062 Score=47.58 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 480
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.00062 Score=47.63 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 481
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.00063 Score=47.86 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 482
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.04 E-value=0.00063 Score=48.55 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.|.+-.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999998743
No 483
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.00049 Score=46.89 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.=+++.||+|+||||+++.|....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 458899999999999999999765
No 484
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.04 E-value=0.00062 Score=47.87 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999988753
No 485
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.03 E-value=0.00095 Score=44.83 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998754
No 486
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.03 E-value=0.00058 Score=47.43 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
-|+|+|++|||||||++.|.+.
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999864
No 487
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.0007 Score=46.10 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998743
No 488
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.03 E-value=0.00089 Score=46.23 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998854
No 489
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.00066 Score=48.17 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998754
No 490
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.03 E-value=0.00059 Score=46.29 Aligned_cols=23 Identities=30% Similarity=0.344 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
.-+.|+|.+|||||||++++...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHH
Confidence 46899999999999999999864
No 491
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.03 E-value=0.00086 Score=47.50 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 492
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.03 E-value=0.00089 Score=47.07 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998754
No 493
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.02 E-value=0.00083 Score=44.17 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999998854
No 494
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.02 E-value=0.00066 Score=47.91 Aligned_cols=23 Identities=39% Similarity=0.406 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
No 495
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.02 E-value=0.00064 Score=46.76 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
=|+|+|++|||||||+++|...
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999864
No 496
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.02 E-value=0.00096 Score=46.17 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998854
No 497
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.02 E-value=0.0005 Score=46.03 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~ 38 (160)
|+++|++||||||+.+.|...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999998865
No 498
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.01 E-value=0.0007 Score=47.57 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 499
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.01 E-value=0.00095 Score=46.66 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 500
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.01 E-value=0.0007 Score=47.85 Aligned_cols=23 Identities=43% Similarity=0.469 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999998754
Done!