Query 031411
Match_columns 160
No_of_seqs 113 out of 1444
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 22:07:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1E-34 3.6E-39 202.6 17.4 144 13-157 11-154 (216)
2 2gf9_A RAS-related protein RAB 100.0 1E-30 3.5E-35 178.5 20.7 152 5-157 12-163 (189)
3 2a5j_A RAS-related protein RAB 100.0 1E-30 3.5E-35 178.9 20.2 149 8-157 14-162 (191)
4 2hup_A RAS-related protein RAB 100.0 3.8E-31 1.3E-35 182.6 18.1 147 9-156 23-170 (201)
5 2fu5_C RAS-related protein RAB 100.0 3.2E-31 1.1E-35 179.9 17.1 147 10-157 3-149 (183)
6 2ew1_A RAS-related protein RAB 100.0 5.1E-31 1.7E-35 182.2 17.4 148 8-156 19-166 (201)
7 2bme_A RAB4A, RAS-related prot 100.0 1.4E-30 4.8E-35 177.0 18.2 150 7-157 2-151 (186)
8 3tkl_A RAS-related protein RAB 100.0 3.9E-30 1.3E-34 176.2 19.8 148 9-157 10-157 (196)
9 3tw8_B RAS-related protein RAB 100.0 3.5E-30 1.2E-34 174.0 19.3 148 8-157 2-149 (181)
10 1z0f_A RAB14, member RAS oncog 100.0 2.7E-30 9.4E-35 174.3 18.6 147 10-157 10-156 (179)
11 2bcg_Y Protein YP2, GTP-bindin 100.0 6.2E-30 2.1E-34 176.8 20.6 145 11-156 4-148 (206)
12 2oil_A CATX-8, RAS-related pro 100.0 3.2E-30 1.1E-34 176.5 18.3 149 8-157 18-166 (193)
13 2efe_B Small GTP-binding prote 100.0 1.2E-29 4.1E-34 171.6 20.1 147 10-157 7-153 (181)
14 2fg5_A RAB-22B, RAS-related pr 100.0 4.3E-30 1.5E-34 176.0 17.8 149 8-157 16-164 (192)
15 1z08_A RAS-related protein RAB 100.0 3.1E-30 1E-34 172.8 16.6 145 12-157 3-147 (170)
16 3dz8_A RAS-related protein RAB 100.0 2E-31 6.8E-36 182.4 11.0 149 8-157 16-164 (191)
17 2il1_A RAB12; G-protein, GDP, 100.0 1.9E-30 6.4E-35 177.8 15.7 149 7-156 18-167 (192)
18 1z06_A RAS-related protein RAB 100.0 4.6E-30 1.6E-34 175.2 17.6 147 9-156 14-162 (189)
19 1zbd_A Rabphilin-3A; G protein 100.0 1.4E-29 4.7E-34 174.6 20.1 147 10-157 3-149 (203)
20 2o52_A RAS-related protein RAB 100.0 4.2E-30 1.4E-34 177.2 17.1 148 9-157 19-166 (200)
21 1z0j_A RAB-22, RAS-related pro 100.0 2.1E-29 7.3E-34 168.6 19.9 145 12-157 3-147 (170)
22 1r2q_A RAS-related protein RAB 100.0 1.1E-29 3.7E-34 169.9 18.2 144 13-157 4-147 (170)
23 1ek0_A Protein (GTP-binding pr 100.0 1.4E-29 4.7E-34 169.4 18.6 144 14-157 2-147 (170)
24 3c5c_A RAS-like protein 12; GD 100.0 8E-30 2.7E-34 174.1 17.6 146 9-157 15-163 (187)
25 1gwn_A RHO-related GTP-binding 100.0 7.1E-30 2.4E-34 176.9 17.1 148 3-152 16-175 (205)
26 3q3j_B RHO-related GTP-binding 100.0 7.1E-30 2.4E-34 177.9 17.1 149 6-156 18-179 (214)
27 3kkq_A RAS-related protein M-R 100.0 1.9E-29 6.5E-34 171.1 18.8 147 9-157 12-159 (183)
28 1g16_A RAS-related protein SEC 100.0 1.1E-29 3.7E-34 170.0 17.2 141 14-156 2-142 (170)
29 3t5g_A GTP-binding protein RHE 100.0 4.1E-29 1.4E-33 169.2 20.2 143 13-157 4-147 (181)
30 2y8e_A RAB-protein 6, GH09086P 100.0 1.5E-29 5.2E-34 170.6 17.8 145 12-157 11-155 (179)
31 3cpj_B GTP-binding protein YPT 100.0 1.3E-29 4.5E-34 177.4 17.9 146 10-156 8-153 (223)
32 2g6b_A RAS-related protein RAB 100.0 2.8E-29 9.7E-34 169.6 19.0 147 10-157 5-152 (180)
33 1z2a_A RAS-related protein RAB 100.0 1.7E-29 5.9E-34 168.7 17.6 143 13-157 3-145 (168)
34 2p5s_A RAS and EF-hand domain 100.0 4.2E-30 1.4E-34 176.9 14.5 149 9-157 22-175 (199)
35 3cbq_A GTP-binding protein REM 100.0 1.7E-29 5.7E-34 173.7 16.6 148 9-157 17-166 (195)
36 2f7s_A C25KG, RAS-related prot 100.0 7.7E-30 2.6E-34 177.6 14.7 147 9-156 19-176 (217)
37 3cph_A RAS-related protein SEC 100.0 6E-29 2.1E-33 172.4 18.9 146 9-156 14-159 (213)
38 3ihw_A Centg3; RAS, centaurin, 100.0 6.6E-29 2.3E-33 169.2 18.3 141 9-156 14-157 (184)
39 1x3s_A RAS-related protein RAB 100.0 5.9E-29 2E-33 170.1 18.1 150 6-157 6-156 (195)
40 1wms_A RAB-9, RAB9, RAS-relate 100.0 9.7E-29 3.3E-33 166.6 18.9 143 11-155 3-150 (177)
41 1ky3_A GTP-binding protein YPT 100.0 2.3E-29 7.8E-34 170.2 15.6 139 11-149 4-147 (182)
42 2fn4_A P23, RAS-related protei 100.0 8.3E-29 2.9E-33 167.3 18.3 145 11-157 5-150 (181)
43 3reg_A RHO-like small GTPase; 100.0 8.5E-29 2.9E-33 169.6 18.4 144 9-154 17-162 (194)
44 2hxs_A RAB-26, RAS-related pro 100.0 2.7E-29 9.2E-34 169.5 15.5 144 13-157 4-151 (178)
45 1m7b_A RND3/RHOE small GTP-bin 100.0 6.9E-29 2.4E-33 168.8 17.4 144 11-156 3-159 (184)
46 3oes_A GTPase rhebl1; small GT 100.0 5.5E-29 1.9E-33 171.6 16.8 146 10-157 19-165 (201)
47 3bc1_A RAS-related protein RAB 100.0 9.9E-29 3.4E-33 168.6 17.6 146 11-157 7-163 (195)
48 2yc2_C IFT27, small RAB-relate 100.0 8E-30 2.7E-34 176.0 12.1 145 13-157 18-169 (208)
49 3q85_A GTP-binding protein REM 100.0 1.2E-28 4.1E-33 165.0 17.3 142 15-157 2-145 (169)
50 3l0i_B RAS-related protein RAB 100.0 1.3E-30 4.6E-35 179.4 7.9 146 9-155 27-172 (199)
51 2atx_A Small GTP binding prote 100.0 1.5E-28 5.3E-33 168.2 18.0 141 11-153 14-166 (194)
52 2gco_A H9, RHO-related GTP-bin 100.0 2.9E-28 9.9E-33 168.0 19.0 146 6-153 16-173 (201)
53 2q3h_A RAS homolog gene family 100.0 2.1E-28 7.1E-33 168.5 17.8 146 9-156 14-172 (201)
54 2bov_A RAla, RAS-related prote 100.0 3E-28 1E-32 168.0 18.5 147 9-157 8-155 (206)
55 1vg8_A RAS-related protein RAB 100.0 2E-28 6.9E-33 169.0 17.4 143 11-155 4-151 (207)
56 3con_A GTPase NRAS; structural 100.0 5.9E-28 2E-32 164.7 19.1 149 6-157 12-161 (190)
57 3clv_A RAB5 protein, putative; 100.0 6.2E-28 2.1E-32 165.7 19.1 141 12-156 4-181 (208)
58 2a9k_A RAS-related protein RAL 100.0 3.8E-28 1.3E-32 164.8 16.8 145 11-157 14-159 (187)
59 1c1y_A RAS-related protein RAP 100.0 4.6E-28 1.6E-32 161.6 16.7 140 15-156 3-144 (167)
60 2nzj_A GTP-binding protein REM 100.0 8.6E-28 2.9E-32 161.5 18.0 142 14-157 3-147 (175)
61 1kao_A RAP2A; GTP-binding prot 100.0 7E-28 2.4E-32 160.5 16.8 140 15-156 3-143 (167)
62 1u8z_A RAS-related protein RAL 100.0 7.3E-28 2.5E-32 160.6 16.6 141 15-157 4-145 (168)
63 2iwr_A Centaurin gamma 1; ANK 100.0 1.7E-27 5.8E-32 160.8 18.4 137 13-156 5-146 (178)
64 2j1l_A RHO-related GTP-binding 100.0 6.7E-28 2.3E-32 167.8 16.2 142 13-156 32-186 (214)
65 2fv8_A H6, RHO-related GTP-bin 100.0 6.8E-28 2.3E-32 166.8 15.9 139 13-153 23-173 (207)
66 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.8E-27 6E-32 161.5 17.6 139 13-153 3-153 (186)
67 3q72_A GTP-binding protein RAD 100.0 1.9E-27 6.5E-32 158.7 17.2 140 15-157 2-142 (166)
68 4dsu_A GTPase KRAS, isoform 2B 100.0 3.8E-27 1.3E-31 160.2 18.6 142 13-157 2-144 (189)
69 3gj0_A GTP-binding nuclear pro 100.0 3.6E-28 1.2E-32 169.7 13.9 145 9-157 9-153 (221)
70 4djt_A GTP-binding nuclear pro 100.0 6.8E-28 2.3E-32 167.9 15.0 146 11-157 7-153 (218)
71 2g3y_A GTP-binding protein GEM 100.0 2.3E-27 7.9E-32 164.9 17.3 145 10-156 32-180 (211)
72 2atv_A RERG, RAS-like estrogen 100.0 1.6E-27 5.4E-32 163.6 16.2 142 13-157 26-168 (196)
73 2j0v_A RAC-like GTP-binding pr 100.0 1.5E-27 5.1E-32 165.5 15.6 142 13-156 7-157 (212)
74 2erx_A GTP-binding protein DI- 100.0 2.9E-27 1E-31 158.3 16.0 141 14-156 2-144 (172)
75 2ce2_X GTPase HRAS; signaling 100.0 9.2E-27 3.2E-31 154.8 18.2 140 15-157 3-143 (166)
76 2h57_A ADP-ribosylation factor 100.0 3.8E-27 1.3E-31 160.9 14.8 133 9-148 15-151 (190)
77 2gf0_A GTP-binding protein DI- 100.0 9.7E-27 3.3E-31 159.6 16.8 141 13-156 6-148 (199)
78 4bas_A ADP-ribosylation factor 100.0 4.2E-27 1.4E-31 161.4 14.9 127 5-135 7-142 (199)
79 2f9l_A RAB11B, member RAS onco 100.0 3E-26 1E-30 157.6 19.2 144 13-157 3-146 (199)
80 3t1o_A Gliding protein MGLA; G 100.0 1.1E-27 3.7E-32 163.9 11.6 142 10-156 9-169 (198)
81 3bwd_D RAC-like GTP-binding pr 100.0 4.7E-28 1.6E-32 163.9 9.7 142 13-156 6-158 (182)
82 4gzl_A RAS-related C3 botulinu 100.0 2.7E-27 9.3E-32 163.6 13.4 140 12-153 27-178 (204)
83 1oix_A RAS-related protein RAB 99.9 4E-26 1.4E-30 156.2 18.4 148 9-157 23-170 (191)
84 1zd9_A ADP-ribosylation factor 99.9 3E-26 1E-30 156.3 15.7 122 9-134 16-138 (188)
85 2h17_A ADP-ribosylation factor 99.9 2.4E-26 8.2E-31 155.8 14.6 123 7-134 13-136 (181)
86 3llu_A RAS-related GTP-binding 99.9 5E-27 1.7E-31 161.2 11.0 149 7-157 12-176 (196)
87 2cjw_A GTP-binding protein GEM 99.9 1.5E-25 5.2E-30 153.5 18.4 142 13-156 4-149 (192)
88 1m2o_B GTP-binding protein SAR 99.9 1E-25 3.6E-30 154.0 16.0 129 13-149 21-150 (190)
89 1f6b_A SAR1; gtpases, N-termin 99.9 4E-26 1.4E-30 157.1 13.5 128 14-149 24-152 (198)
90 1zj6_A ADP-ribosylation factor 99.9 1.1E-25 3.6E-30 153.3 13.9 117 13-134 14-131 (187)
91 1upt_A ARL1, ADP-ribosylation 99.9 3.8E-25 1.3E-29 148.1 15.9 118 13-135 5-123 (171)
92 1ksh_A ARF-like protein 2; sma 99.9 6.9E-25 2.3E-29 149.0 16.8 117 13-134 16-133 (186)
93 2zej_A Dardarin, leucine-rich 99.9 1.5E-26 5E-31 157.4 7.6 138 15-154 2-148 (184)
94 1r8s_A ADP-ribosylation factor 99.9 6.2E-26 2.1E-30 151.0 10.3 114 16-134 1-115 (164)
95 2b6h_A ADP-ribosylation factor 99.9 1.5E-25 5E-30 153.5 12.3 117 13-134 27-144 (192)
96 2wkq_A NPH1-1, RAS-related C3 99.9 7.9E-25 2.7E-29 160.9 16.7 141 14-156 154-307 (332)
97 1fzq_A ADP-ribosylation factor 99.9 2E-25 7E-30 151.4 12.0 117 13-134 14-131 (181)
98 1moz_A ARL1, ADP-ribosylation 99.9 2.5E-25 8.6E-30 150.7 12.2 117 13-134 16-133 (183)
99 3th5_A RAS-related C3 botulinu 99.9 1.3E-27 4.5E-32 165.0 0.0 139 13-153 28-178 (204)
100 3r7w_A Gtpase1, GTP-binding pr 99.9 7.6E-25 2.6E-29 160.1 13.7 135 14-152 2-152 (307)
101 2x77_A ADP-ribosylation factor 99.9 6.4E-25 2.2E-29 149.6 11.4 118 13-135 20-138 (189)
102 3r7w_B Gtpase2, GTP-binding pr 99.9 4.7E-25 1.6E-29 161.1 7.8 135 17-157 1-153 (331)
103 2fh5_B SR-beta, signal recogni 99.9 1.8E-24 6E-29 150.2 10.2 120 13-135 5-130 (214)
104 3o47_A ADP-ribosylation factor 99.9 1E-23 3.4E-28 155.5 13.5 117 13-134 163-280 (329)
105 3c5h_A Glucocorticoid receptor 99.9 1.9E-25 6.6E-30 159.4 4.2 149 5-156 9-232 (255)
106 2lkc_A Translation initiation 99.9 9.2E-24 3.1E-28 142.2 12.0 117 12-134 5-121 (178)
107 2wji_A Ferrous iron transport 99.9 4.8E-23 1.7E-27 137.7 12.1 132 15-156 3-142 (165)
108 1nrj_B SR-beta, signal recogni 99.9 2E-24 6.8E-29 150.3 5.4 131 12-152 9-157 (218)
109 3lvq_E ARF-GAP with SH3 domain 99.9 1.2E-22 4.1E-27 157.1 15.5 118 12-134 319-437 (497)
110 2qu8_A Putative nucleolar GTP- 99.9 2.4E-22 8.4E-27 140.9 14.3 137 12-152 26-176 (228)
111 3dpu_A RAB family protein; roc 99.9 2.2E-23 7.4E-28 162.6 8.0 142 12-158 38-189 (535)
112 2ged_A SR-beta, signal recogni 99.9 6.6E-23 2.3E-27 139.9 9.5 115 12-135 45-171 (193)
113 2wjg_A FEOB, ferrous iron tran 99.9 1.7E-22 5.7E-27 137.3 11.1 133 14-156 6-146 (188)
114 2dyk_A GTP-binding protein; GT 99.9 4.2E-22 1.4E-26 131.9 9.9 114 16-135 2-123 (161)
115 2cxx_A Probable GTP-binding pr 99.9 3.7E-23 1.3E-27 140.6 4.7 128 16-153 2-151 (190)
116 3a1s_A Iron(II) transport prot 99.9 8.8E-22 3E-26 140.6 11.9 135 13-157 3-145 (258)
117 3iev_A GTP-binding protein ERA 99.9 2.1E-21 7.1E-26 142.0 13.2 137 10-152 5-153 (308)
118 2gj8_A MNME, tRNA modification 99.9 7.4E-22 2.5E-26 132.9 9.8 116 15-133 4-128 (172)
119 1svi_A GTP-binding protein YSX 99.9 3.6E-22 1.2E-26 136.4 7.8 116 12-134 20-148 (195)
120 3iby_A Ferrous iron transport 99.9 4.5E-22 1.5E-26 142.0 8.2 131 16-156 2-144 (256)
121 3i8s_A Ferrous iron transport 99.9 9.6E-22 3.3E-26 141.6 8.9 132 15-156 3-146 (274)
122 3pqc_A Probable GTP-binding pr 99.9 4.4E-22 1.5E-26 135.7 6.8 139 10-158 18-175 (195)
123 3lxw_A GTPase IMAP family memb 99.8 1.8E-20 6.1E-25 133.1 12.3 146 9-156 15-180 (247)
124 3b1v_A Ferrous iron uptake tra 99.8 1.8E-21 6.3E-26 139.9 7.2 132 14-156 2-141 (272)
125 3k53_A Ferrous iron transport 99.8 1.1E-20 3.9E-25 135.7 10.5 133 15-156 3-143 (271)
126 3lxx_A GTPase IMAP family memb 99.8 1.7E-20 5.7E-25 132.5 10.9 141 12-156 26-186 (239)
127 1wf3_A GTP-binding protein; GT 99.8 3.1E-20 1.1E-24 135.3 12.6 116 14-134 6-131 (301)
128 3j2k_7 ERF3, eukaryotic polype 99.8 3.1E-20 1.1E-24 141.6 11.3 123 9-133 11-168 (439)
129 3def_A T7I23.11 protein; chlor 99.8 1.5E-19 5.2E-24 129.3 14.2 117 14-133 35-164 (262)
130 3gee_A MNME, tRNA modification 99.8 5.5E-20 1.9E-24 141.2 11.6 117 15-135 233-358 (476)
131 2hjg_A GTP-binding protein ENG 99.8 3.2E-20 1.1E-24 141.5 8.4 116 13-134 173-300 (436)
132 4dhe_A Probable GTP-binding pr 99.8 1.2E-20 3.9E-25 131.6 4.4 117 12-134 26-158 (223)
133 1wb1_A Translation elongation 99.8 1.8E-19 6E-24 138.8 10.5 135 8-151 12-157 (482)
134 4dcu_A GTP-binding protein ENG 99.8 1.1E-19 3.6E-24 139.3 9.0 133 12-151 192-336 (456)
135 1lnz_A SPO0B-associated GTP-bi 99.8 2.3E-20 7.8E-25 138.0 5.1 130 16-151 159-300 (342)
136 3qq5_A Small GTP-binding prote 99.8 7.4E-20 2.5E-24 138.5 7.1 134 11-154 30-171 (423)
137 1xzp_A Probable tRNA modificat 99.8 1.8E-19 6.1E-24 138.5 9.2 133 16-159 244-387 (482)
138 1jny_A EF-1-alpha, elongation 99.8 4E-20 1.4E-24 140.9 5.2 137 13-152 4-181 (435)
139 2e87_A Hypothetical protein PH 99.8 2.2E-18 7.6E-23 128.3 14.4 140 13-158 165-317 (357)
140 2xtp_A GTPase IMAP family memb 99.8 2E-18 7E-23 123.1 13.6 119 12-133 19-152 (260)
141 3cb4_D GTP-binding protein LEP 99.8 2.3E-19 7.8E-24 140.9 9.3 118 14-135 3-138 (599)
142 1h65_A Chloroplast outer envel 99.8 2.9E-18 9.8E-23 123.1 13.9 118 13-133 37-167 (270)
143 3sjy_A Translation initiation 99.8 1.3E-18 4.3E-23 131.5 12.0 132 12-149 5-159 (403)
144 2qtf_A Protein HFLX, GTP-bindi 99.8 1E-18 3.5E-23 130.2 11.2 116 16-134 180-306 (364)
145 2ywe_A GTP-binding protein LEP 99.8 5.1E-19 1.8E-23 138.8 9.9 119 13-135 4-140 (600)
146 1s0u_A EIF-2-gamma, translatio 99.8 6.3E-18 2.2E-22 127.9 15.4 141 13-159 6-180 (408)
147 1r5b_A Eukaryotic peptide chai 99.8 2.2E-19 7.5E-24 137.9 7.5 137 13-151 41-217 (467)
148 3p26_A Elongation factor 1 alp 99.8 8E-19 2.8E-23 135.3 10.4 119 13-134 31-185 (483)
149 1zun_B Sulfate adenylate trans 99.8 1.8E-18 6.2E-23 131.8 11.7 135 12-152 21-192 (434)
150 3geh_A MNME, tRNA modification 99.8 1.7E-19 5.8E-24 138.0 5.7 114 14-135 223-345 (462)
151 3t5d_A Septin-7; GTP-binding p 99.8 3E-19 1E-23 128.5 6.5 117 13-133 6-157 (274)
152 1mky_A Probable GTP-binding pr 99.8 2.6E-18 8.9E-23 131.1 11.6 110 16-133 2-123 (439)
153 2c78_A Elongation factor TU-A; 99.8 8.7E-19 3E-23 132.5 8.4 135 12-152 8-162 (405)
154 1ega_A Protein (GTP-binding pr 99.8 6.1E-18 2.1E-22 123.2 12.0 132 14-153 7-148 (301)
155 3tr5_A RF-3, peptide chain rel 99.8 3.3E-18 1.1E-22 132.9 11.1 132 13-153 11-164 (528)
156 1f60_A Elongation factor EEF1A 99.8 1.3E-19 4.5E-24 138.8 2.6 135 13-152 5-180 (458)
157 3ohm_A Guanine nucleotide-bind 99.8 8.4E-18 2.9E-22 123.2 12.1 94 53-148 158-277 (327)
158 2qag_A Septin-2, protein NEDD5 99.8 6.3E-19 2.1E-23 131.4 6.1 137 13-155 35-210 (361)
159 3izq_1 HBS1P, elongation facto 99.8 9E-19 3.1E-23 138.1 7.3 121 12-134 164-319 (611)
160 1kk1_A EIF2gamma; initiation o 99.8 3.7E-18 1.3E-22 129.2 10.2 135 10-150 5-168 (410)
161 3izy_P Translation initiation 99.8 3.8E-20 1.3E-24 143.5 -1.2 128 14-146 3-130 (537)
162 1cip_A Protein (guanine nucleo 99.7 1E-17 3.4E-22 124.3 11.4 93 55-149 186-303 (353)
163 1d2e_A Elongation factor TU (E 99.7 9.5E-18 3.3E-22 126.5 11.1 133 14-152 2-153 (397)
164 2hjg_A GTP-binding protein ENG 99.7 2.6E-18 8.9E-23 131.0 6.4 113 16-134 4-125 (436)
165 1zo1_I IF2, translation initia 99.7 9.7E-19 3.3E-23 134.6 2.8 112 14-134 3-117 (501)
166 1dar_A EF-G, elongation factor 99.7 4.5E-17 1.5E-21 130.2 12.4 121 10-136 7-145 (691)
167 1mky_A Probable GTP-binding pr 99.7 5.9E-17 2E-21 123.6 11.9 116 13-134 178-306 (439)
168 3mca_A HBS1, elongation factor 99.7 5E-19 1.7E-23 139.2 -0.1 118 12-134 174-329 (592)
169 2h5e_A Peptide chain release f 99.7 6.3E-17 2.1E-21 125.8 11.1 117 13-135 11-149 (529)
170 1n0u_A EF-2, elongation factor 99.7 3.2E-17 1.1E-21 133.4 9.4 126 12-141 16-171 (842)
171 4dcu_A GTP-binding protein ENG 99.7 6.1E-18 2.1E-22 129.6 4.4 115 13-133 21-144 (456)
172 2rdo_7 EF-G, elongation factor 99.7 2.4E-16 8.3E-21 126.1 13.8 132 12-147 7-161 (704)
173 2xex_A Elongation factor G; GT 99.7 1.1E-16 3.7E-21 128.0 11.7 117 13-135 8-142 (693)
174 2elf_A Protein translation elo 99.7 1.2E-17 4.1E-22 124.7 5.7 119 17-151 23-144 (370)
175 4fid_A G protein alpha subunit 99.7 8E-17 2.7E-21 118.5 9.5 76 56-133 155-241 (340)
176 1g7s_A Translation initiation 99.7 2.9E-17 1E-21 129.0 7.6 112 14-134 4-136 (594)
177 3avx_A Elongation factor TS, e 99.7 3.1E-17 1.1E-21 135.3 6.6 138 11-152 292-446 (1289)
178 1azs_C GS-alpha; complex (lyas 99.7 4.4E-16 1.5E-20 116.9 12.1 76 56-133 211-297 (402)
179 3t34_A Dynamin-related protein 99.7 8.9E-17 3.1E-21 119.7 8.1 136 14-153 33-235 (360)
180 1wxq_A GTP-binding protein; st 99.7 1.5E-16 5.1E-21 119.8 9.2 85 16-100 1-114 (397)
181 2xtz_A Guanine nucleotide-bind 99.7 3.6E-16 1.2E-20 115.9 9.7 72 62-133 181-263 (354)
182 2aka_B Dynamin-1; fusion prote 99.7 5.6E-16 1.9E-20 112.3 9.9 120 12-135 23-207 (299)
183 1pui_A ENGB, probable GTP-bind 99.6 4.7E-16 1.6E-20 107.2 7.3 131 13-152 24-170 (210)
184 1jwy_B Dynamin A GTPase domain 99.6 4E-16 1.4E-20 114.0 7.1 69 64-135 131-213 (315)
185 1jal_A YCHF protein; nucleotid 99.6 1.7E-15 6E-20 112.3 10.5 84 16-99 3-108 (363)
186 2qpt_A EH domain-containing pr 99.6 2E-16 6.8E-21 123.5 5.6 120 11-133 61-231 (550)
187 3vqt_A RF-3, peptide chain rel 99.6 7.4E-15 2.5E-19 114.6 11.6 129 13-147 29-179 (548)
188 2qag_C Septin-7; cell cycle, c 99.6 4.8E-15 1.6E-19 112.0 9.8 140 11-155 27-203 (418)
189 2dy1_A Elongation factor G; tr 99.6 1.8E-14 6.3E-19 114.8 12.7 130 13-152 7-154 (665)
190 2j69_A Bacterial dynamin-like 99.6 7.3E-15 2.5E-19 117.5 10.2 118 14-134 68-244 (695)
191 1udx_A The GTP-binding protein 99.6 1.2E-14 4.1E-19 109.8 9.8 137 17-158 159-306 (416)
192 4a9a_A Ribosome-interacting GT 99.6 3.9E-14 1.3E-18 105.6 11.2 118 13-133 70-195 (376)
193 2qnr_A Septin-2, protein NEDD5 99.5 2.2E-15 7.4E-20 109.7 3.1 141 11-155 14-191 (301)
194 4fn5_A EF-G 1, elongation fact 99.5 9.4E-14 3.2E-18 111.5 11.8 131 13-147 11-164 (709)
195 1zcb_A G alpha I/13; GTP-bindi 99.5 2.9E-14 1E-18 106.1 8.1 93 54-148 193-311 (362)
196 2x2e_A Dynamin-1; nitration, h 99.5 2.4E-14 8.2E-19 106.4 5.5 118 14-135 30-212 (353)
197 2dby_A GTP-binding protein; GD 99.5 1.1E-13 3.9E-18 103.0 8.7 84 16-99 2-111 (368)
198 1u0l_A Probable GTPase ENGC; p 99.5 3.8E-15 1.3E-19 108.4 0.6 111 30-152 32-144 (301)
199 3j25_A Tetracycline resistance 99.4 2.1E-14 7.3E-19 113.9 1.2 125 16-146 3-145 (638)
200 2ohf_A Protein OLA1, GTP-bindi 99.4 2.5E-13 8.4E-18 101.8 4.9 90 13-102 20-131 (396)
201 2wsm_A Hydrogenase expression/ 99.2 1.7E-12 5.8E-17 90.0 2.3 125 15-151 30-184 (221)
202 3p32_A Probable GTPase RV1496/ 99.2 1E-12 3.5E-17 97.7 0.4 59 64-133 172-230 (355)
203 3zvr_A Dynamin-1; hydrolase, D 99.2 8.7E-11 3E-15 94.4 10.5 118 14-135 50-232 (772)
204 2hf9_A Probable hydrogenase ni 99.2 5.5E-14 1.9E-18 97.9 -8.5 29 14-42 37-65 (226)
205 2www_A Methylmalonic aciduria 99.2 7.7E-11 2.6E-15 87.4 7.9 59 64-133 167-225 (349)
206 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 2.8E-10 9.7E-15 85.3 7.3 89 11-99 16-127 (392)
207 3sop_A Neuronal-specific septi 99.0 2.4E-10 8.1E-15 81.9 4.7 24 15-38 2-25 (270)
208 2p67_A LAO/AO transport system 99.0 1E-10 3.5E-15 86.5 2.3 59 64-133 149-207 (341)
209 1yrb_A ATP(GTP)binding protein 99.0 5.6E-10 1.9E-14 79.2 5.7 69 64-133 109-184 (262)
210 3ec1_A YQEH GTPase; atnos1, at 98.9 2.1E-10 7.1E-15 85.7 0.5 109 16-133 163-287 (369)
211 2yv5_A YJEQ protein; hydrolase 98.9 4.1E-09 1.4E-13 76.6 6.9 78 74-155 66-145 (302)
212 2qag_B Septin-6, protein NEDD5 98.9 3.7E-09 1.3E-13 79.9 6.8 60 15-74 42-105 (427)
213 3l82_B F-box only protein 4; T 98.8 1.9E-09 6.6E-14 73.9 3.7 73 71-144 109-187 (227)
214 2qm8_A GTPase/ATPase; G protei 98.8 2.9E-09 1E-13 78.5 4.5 59 64-133 148-206 (337)
215 3h2y_A GTPase family protein; 98.8 1.2E-09 4.1E-14 81.5 1.5 109 16-133 161-286 (368)
216 1puj_A YLQF, conserved hypothe 98.6 4.2E-08 1.4E-12 70.6 5.2 58 13-75 118-176 (282)
217 3cnl_A YLQF, putative uncharac 98.6 2.1E-08 7E-13 71.5 2.8 57 16-76 100-156 (262)
218 3l2o_B F-box only protein 4; s 98.5 2E-08 7E-13 72.0 1.7 71 71-142 194-270 (312)
219 2j37_W Signal recognition part 98.5 1.3E-07 4.6E-12 73.0 4.7 113 14-133 100-253 (504)
220 1f5n_A Interferon-induced guan 98.3 4.4E-07 1.5E-11 71.4 3.4 62 12-75 35-102 (592)
221 1tq4_A IIGP1, interferon-induc 98.2 5.1E-06 1.7E-10 62.8 7.4 109 15-132 69-187 (413)
222 3szr_A Interferon-induced GTP- 98.1 5.7E-06 2E-10 65.5 6.0 23 17-39 47-69 (608)
223 1bif_A 6-phosphofructo-2-kinas 98.0 2.4E-07 8.2E-12 71.2 -2.5 101 14-116 38-148 (469)
224 3h2y_A GTPase family protein; 98.0 2.7E-06 9.4E-11 63.4 3.2 56 73-134 55-110 (368)
225 2v3c_C SRP54, signal recogniti 98.0 9.9E-06 3.4E-10 61.6 5.7 63 64-133 181-251 (432)
226 3dm5_A SRP54, signal recogniti 97.9 2.5E-05 8.5E-10 59.4 6.9 64 64-133 183-252 (443)
227 3ec1_A YQEH GTPase; atnos1, at 97.8 2.7E-06 9.3E-11 63.4 0.3 56 73-134 57-112 (369)
228 3q5d_A Atlastin-1; G protein, 97.7 2.8E-05 9.7E-10 59.2 4.1 25 13-37 65-89 (447)
229 3kl4_A SRP54, signal recogniti 97.7 8.7E-05 3E-09 56.4 6.5 64 64-133 180-251 (433)
230 1ye8_A Protein THEP1, hypothet 97.7 2.4E-05 8.3E-10 52.4 3.1 22 17-38 2-23 (178)
231 1puj_A YLQF, conserved hypothe 97.7 2.7E-05 9.2E-10 56.0 3.3 59 68-134 3-64 (282)
232 1kgd_A CASK, peripheral plasma 97.6 4.4E-05 1.5E-09 51.0 3.0 22 17-38 7-28 (180)
233 1j8m_F SRP54, signal recogniti 97.5 0.00015 5.1E-09 52.5 5.8 80 64-155 181-269 (297)
234 1lvg_A Guanylate kinase, GMP k 97.5 5.5E-05 1.9E-09 51.4 3.0 21 17-37 6-26 (198)
235 3tr0_A Guanylate kinase, GMP k 97.4 7.2E-05 2.5E-09 50.6 3.0 22 17-38 9-30 (205)
236 3a00_A Guanylate kinase, GMP k 97.4 7.1E-05 2.4E-09 50.2 2.9 20 18-37 4-23 (186)
237 3ney_A 55 kDa erythrocyte memb 97.4 9.4E-05 3.2E-09 50.3 3.3 23 16-38 20-42 (197)
238 1zp6_A Hypothetical protein AT 97.4 8E-05 2.7E-09 49.9 3.0 23 16-38 10-32 (191)
239 1znw_A Guanylate kinase, GMP k 97.4 7.7E-05 2.6E-09 50.9 2.9 23 16-38 21-43 (207)
240 1ak2_A Adenylate kinase isoenz 97.4 0.00011 3.6E-09 51.1 3.4 29 9-37 10-38 (233)
241 4gp7_A Metallophosphoesterase; 97.4 8.3E-05 2.8E-09 49.3 2.6 19 17-35 11-29 (171)
242 1s96_A Guanylate kinase, GMP k 97.4 0.0001 3.4E-09 51.0 3.0 23 17-39 18-40 (219)
243 1ukz_A Uridylate kinase; trans 97.4 0.00018 6.1E-09 48.7 4.1 26 12-37 12-37 (203)
244 1z6g_A Guanylate kinase; struc 97.4 0.0001 3.5E-09 50.8 2.9 22 17-38 25-46 (218)
245 1knq_A Gluconate kinase; ALFA/ 97.3 0.00018 6.1E-09 47.5 3.7 22 16-37 9-30 (175)
246 2wwf_A Thymidilate kinase, put 97.3 0.00018 6.3E-09 48.9 3.8 23 15-37 10-32 (212)
247 3c8u_A Fructokinase; YP_612366 97.3 0.00014 4.9E-09 49.6 3.2 24 14-37 21-44 (208)
248 3tif_A Uncharacterized ABC tra 97.3 0.00013 4.3E-09 51.0 2.9 23 17-39 33-55 (235)
249 3tau_A Guanylate kinase, GMP k 97.3 0.00013 4.6E-09 49.8 3.0 22 17-38 10-31 (208)
250 1htw_A HI0065; nucleotide-bind 97.3 0.00015 5.2E-09 47.5 2.9 23 17-39 35-57 (158)
251 1ex7_A Guanylate kinase; subst 97.3 0.00018 6E-09 48.5 3.1 21 18-38 4-24 (186)
252 3lw7_A Adenylate kinase relate 97.3 0.00018 6.2E-09 47.1 3.1 20 16-35 2-21 (179)
253 2pcj_A ABC transporter, lipopr 97.2 0.00016 5.3E-09 50.2 2.8 23 17-39 32-54 (224)
254 2bdt_A BH3686; alpha-beta prot 97.2 0.00017 5.9E-09 48.2 2.9 21 17-37 4-24 (189)
255 2qor_A Guanylate kinase; phosp 97.2 0.00017 6E-09 49.0 3.0 23 16-38 13-35 (204)
256 2j41_A Guanylate kinase; GMP, 97.2 0.00017 5.9E-09 48.8 2.9 24 16-39 7-30 (207)
257 1kag_A SKI, shikimate kinase I 97.2 0.00019 6.4E-09 47.3 3.0 22 17-38 6-27 (173)
258 2onk_A Molybdate/tungstate ABC 97.2 0.00019 6.6E-09 50.3 3.1 23 17-39 26-48 (240)
259 1ly1_A Polynucleotide kinase; 97.2 0.00022 7.6E-09 47.1 3.1 22 16-37 3-24 (181)
260 3gfo_A Cobalt import ATP-bindi 97.2 0.0002 6.7E-09 51.3 3.0 23 17-39 36-58 (275)
261 2bbw_A Adenylate kinase 4, AK4 97.2 0.00024 8.2E-09 49.7 3.4 21 16-36 28-48 (246)
262 1b0u_A Histidine permease; ABC 97.2 0.0002 6.9E-09 50.8 3.0 23 17-39 34-56 (262)
263 1sgw_A Putative ABC transporte 97.2 0.00021 7.2E-09 49.2 3.0 23 17-39 37-59 (214)
264 4eun_A Thermoresistant glucoki 97.2 0.00021 7.2E-09 48.4 3.0 22 16-37 30-51 (200)
265 3kb2_A SPBC2 prophage-derived 97.2 0.00024 8.1E-09 46.6 3.1 21 17-37 3-23 (173)
266 3asz_A Uridine kinase; cytidin 97.2 0.00025 8.6E-09 48.2 3.3 22 16-37 7-28 (211)
267 2cbz_A Multidrug resistance-as 97.2 0.00024 8.1E-09 49.7 3.2 23 17-39 33-55 (237)
268 1g6h_A High-affinity branched- 97.2 0.00021 7.2E-09 50.6 2.9 23 17-39 35-57 (257)
269 2i3b_A HCR-ntpase, human cance 97.2 0.0002 6.8E-09 48.4 2.6 21 17-37 3-23 (189)
270 4g1u_C Hemin import ATP-bindin 97.2 0.00022 7.5E-09 50.8 3.0 23 17-39 39-61 (266)
271 2rcn_A Probable GTPase ENGC; Y 97.2 0.00026 8.8E-09 52.5 3.4 24 17-40 217-240 (358)
272 3fb4_A Adenylate kinase; psych 97.2 0.00024 8.3E-09 48.5 3.1 22 16-37 1-22 (216)
273 1mv5_A LMRA, multidrug resista 97.2 0.00027 9.1E-09 49.6 3.2 23 17-39 30-52 (243)
274 2ff7_A Alpha-hemolysin translo 97.1 0.00027 9.1E-09 49.8 3.2 23 17-39 37-59 (247)
275 2eyu_A Twitching motility prot 97.1 0.00024 8.3E-09 50.4 3.0 22 16-37 26-47 (261)
276 3dl0_A Adenylate kinase; phosp 97.1 0.00026 8.9E-09 48.4 3.1 22 16-37 1-22 (216)
277 2olj_A Amino acid ABC transpor 97.1 0.00025 8.6E-09 50.4 3.0 23 17-39 52-74 (263)
278 2pze_A Cystic fibrosis transme 97.1 0.00029 9.8E-09 49.0 3.2 23 17-39 36-58 (229)
279 1ji0_A ABC transporter; ATP bi 97.1 0.00025 8.6E-09 49.6 2.9 23 17-39 34-56 (240)
280 1vpl_A ABC transporter, ATP-bi 97.1 0.00026 8.8E-09 50.1 3.0 23 17-39 43-65 (256)
281 2qi9_C Vitamin B12 import ATP- 97.1 0.00026 9E-09 49.9 3.0 23 17-39 28-50 (249)
282 3t61_A Gluconokinase; PSI-biol 97.1 0.00027 9.1E-09 47.9 2.9 22 16-37 19-40 (202)
283 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00028 9.7E-09 49.7 3.1 22 17-38 31-52 (250)
284 2zu0_C Probable ATP-dependent 97.1 0.00029 9.9E-09 50.1 3.1 22 17-38 48-69 (267)
285 3b85_A Phosphate starvation-in 97.1 0.00025 8.4E-09 48.6 2.6 22 17-38 24-45 (208)
286 2ihy_A ABC transporter, ATP-bi 97.1 0.00031 1.1E-08 50.3 3.2 23 17-39 49-71 (279)
287 3co5_A Putative two-component 97.1 0.00096 3.3E-08 42.7 5.2 23 16-38 28-50 (143)
288 2ghi_A Transport protein; mult 97.1 0.00031 1.1E-08 49.8 3.2 22 17-38 48-69 (260)
289 3vaa_A Shikimate kinase, SK; s 97.1 0.00034 1.2E-08 47.3 3.2 22 16-37 26-47 (199)
290 2if2_A Dephospho-COA kinase; a 97.1 0.00031 1E-08 47.6 3.0 22 16-37 2-23 (204)
291 3ec2_A DNA replication protein 97.1 0.00028 9.5E-09 46.9 2.7 23 16-38 39-61 (180)
292 3sr0_A Adenylate kinase; phosp 97.1 0.00034 1.2E-08 47.9 3.2 22 16-37 1-22 (206)
293 2ixe_A Antigen peptide transpo 97.1 0.00034 1.2E-08 49.9 3.2 23 17-39 47-69 (271)
294 2vp4_A Deoxynucleoside kinase; 97.1 0.00038 1.3E-08 48.2 3.4 26 13-38 18-43 (230)
295 1nks_A Adenylate kinase; therm 97.1 0.0004 1.4E-08 46.3 3.3 22 16-37 2-23 (194)
296 2nq2_C Hypothetical ABC transp 97.1 0.00032 1.1E-08 49.5 2.9 23 17-39 33-55 (253)
297 2yz2_A Putative ABC transporte 97.1 0.00032 1.1E-08 49.9 2.9 23 17-39 35-57 (266)
298 2jaq_A Deoxyguanosine kinase; 97.1 0.00036 1.2E-08 47.0 3.1 21 17-37 2-22 (205)
299 2v9p_A Replication protein E1; 97.1 0.00034 1.2E-08 50.7 3.1 21 17-37 128-148 (305)
300 2ehv_A Hypothetical protein PH 97.1 0.00035 1.2E-08 48.6 3.1 20 17-36 32-51 (251)
301 1qhx_A CPT, protein (chloramph 97.1 0.00038 1.3E-08 46.0 3.1 21 17-37 5-25 (178)
302 2cdn_A Adenylate kinase; phosp 97.0 0.00048 1.6E-08 46.5 3.6 23 15-37 20-42 (201)
303 1jjv_A Dephospho-COA kinase; P 97.0 0.00047 1.6E-08 46.7 3.5 22 16-37 3-24 (206)
304 3lnc_A Guanylate kinase, GMP k 97.0 0.00021 7.2E-09 49.5 1.8 22 17-38 29-51 (231)
305 1np6_A Molybdopterin-guanine d 97.0 0.00038 1.3E-08 46.4 3.0 23 16-38 7-29 (174)
306 1uf9_A TT1252 protein; P-loop, 97.0 0.00046 1.6E-08 46.5 3.4 25 14-38 7-31 (203)
307 3cm0_A Adenylate kinase; ATP-b 97.0 0.00054 1.9E-08 45.5 3.7 22 16-37 5-26 (186)
308 2qt1_A Nicotinamide riboside k 97.0 0.00058 2E-08 46.3 3.9 25 14-38 20-44 (207)
309 1y63_A LMAJ004144AAA protein; 97.0 0.00046 1.6E-08 46.1 3.4 23 16-38 11-33 (184)
310 1cke_A CK, MSSA, protein (cyti 97.0 0.00042 1.4E-08 47.6 3.2 22 16-37 6-27 (227)
311 3umf_A Adenylate kinase; rossm 97.0 0.00064 2.2E-08 46.9 4.1 20 18-37 32-51 (217)
312 3uie_A Adenylyl-sulfate kinase 97.0 0.00038 1.3E-08 47.1 2.9 22 16-37 26-47 (200)
313 2pjz_A Hypothetical protein ST 97.0 0.00043 1.5E-08 49.2 3.2 23 17-39 32-54 (263)
314 4a74_A DNA repair and recombin 97.0 0.00037 1.3E-08 47.9 2.8 21 17-37 27-47 (231)
315 1e4v_A Adenylate kinase; trans 97.0 0.00042 1.4E-08 47.4 3.0 22 16-37 1-22 (214)
316 2rhm_A Putative kinase; P-loop 97.0 0.00055 1.9E-08 45.7 3.5 22 16-37 6-27 (193)
317 1u0l_A Probable GTPase ENGC; p 97.0 0.00047 1.6E-08 49.9 3.4 24 17-40 171-194 (301)
318 3trf_A Shikimate kinase, SK; a 97.0 0.00051 1.8E-08 45.6 3.3 22 16-37 6-27 (185)
319 3aez_A Pantothenate kinase; tr 97.0 0.00057 2E-08 49.7 3.8 25 13-37 88-112 (312)
320 1kht_A Adenylate kinase; phosp 97.0 0.00051 1.8E-08 45.7 3.2 22 16-37 4-25 (192)
321 2yv5_A YJEQ protein; hydrolase 97.0 0.00045 1.5E-08 50.0 3.1 22 17-39 167-188 (302)
322 1t9h_A YLOQ, probable GTPase E 97.0 0.00014 4.6E-09 52.9 0.3 23 17-39 175-197 (307)
323 3be4_A Adenylate kinase; malar 97.0 0.00045 1.5E-08 47.4 2.9 23 15-37 5-27 (217)
324 3tlx_A Adenylate kinase 2; str 97.0 0.00063 2.2E-08 47.6 3.7 24 14-37 28-51 (243)
325 1lw7_A Transcriptional regulat 97.0 0.00039 1.3E-08 51.6 2.8 24 15-38 170-193 (365)
326 3cnl_A YLQF, putative uncharac 97.0 0.00016 5.5E-09 51.3 0.7 56 71-134 4-60 (262)
327 2plr_A DTMP kinase, probable t 96.9 0.00064 2.2E-08 46.0 3.5 22 16-37 5-26 (213)
328 1aky_A Adenylate kinase; ATP:A 96.9 0.00058 2E-08 46.8 3.2 22 16-37 5-26 (220)
329 2pt5_A Shikimate kinase, SK; a 96.9 0.00059 2E-08 44.6 3.1 21 17-37 2-22 (168)
330 2bbs_A Cystic fibrosis transme 96.9 0.00053 1.8E-08 49.4 3.0 23 17-39 66-88 (290)
331 2jeo_A Uridine-cytidine kinase 96.9 0.00065 2.2E-08 47.5 3.4 23 15-37 25-47 (245)
332 3jvv_A Twitching mobility prot 96.9 0.0005 1.7E-08 51.0 2.9 21 17-37 125-145 (356)
333 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00065 2.2E-08 50.4 3.5 23 17-39 32-54 (359)
334 1tev_A UMP-CMP kinase; ploop, 96.9 0.00076 2.6E-08 45.0 3.6 22 16-37 4-25 (196)
335 1zd8_A GTP:AMP phosphotransfer 96.9 0.00059 2E-08 47.0 3.1 22 16-37 8-29 (227)
336 2f1r_A Molybdopterin-guanine d 96.9 0.00027 9.1E-09 47.0 1.2 22 17-38 4-25 (171)
337 1z47_A CYSA, putative ABC-tran 96.9 0.00057 2E-08 50.6 3.1 23 17-39 43-65 (355)
338 1via_A Shikimate kinase; struc 96.9 0.00053 1.8E-08 45.3 2.6 21 17-37 6-26 (175)
339 2x8a_A Nuclear valosin-contain 96.9 0.00057 1.9E-08 48.8 2.9 20 18-37 47-66 (274)
340 3nh6_A ATP-binding cassette SU 96.9 0.00038 1.3E-08 50.6 2.0 22 17-38 82-103 (306)
341 3tui_C Methionine import ATP-b 96.9 0.00061 2.1E-08 50.6 3.1 23 17-39 56-78 (366)
342 3tqc_A Pantothenate kinase; bi 96.9 0.00086 2.9E-08 49.0 3.9 25 13-37 90-114 (321)
343 3rlf_A Maltose/maltodextrin im 96.9 0.00062 2.1E-08 50.9 3.1 23 17-39 31-53 (381)
344 2yyz_A Sugar ABC transporter, 96.9 0.00061 2.1E-08 50.5 3.1 23 17-39 31-53 (359)
345 2it1_A 362AA long hypothetical 96.9 0.00063 2.2E-08 50.5 3.1 23 17-39 31-53 (362)
346 2xb4_A Adenylate kinase; ATP-b 96.9 0.00071 2.4E-08 46.6 3.2 21 17-37 2-22 (223)
347 1gvn_B Zeta; postsegregational 96.9 0.00088 3E-08 48.1 3.8 23 15-37 33-55 (287)
348 1odf_A YGR205W, hypothetical 3 96.8 0.00099 3.4E-08 48.0 3.9 25 13-37 29-53 (290)
349 2ze6_A Isopentenyl transferase 96.8 0.00068 2.3E-08 47.7 3.0 21 17-37 3-23 (253)
350 2f6r_A COA synthase, bifunctio 96.8 0.0012 4.3E-08 47.1 4.4 25 13-37 73-97 (281)
351 2kjq_A DNAA-related protein; s 96.8 0.00049 1.7E-08 44.6 2.1 22 17-38 38-59 (149)
352 1ixz_A ATP-dependent metallopr 96.8 0.00069 2.4E-08 47.5 3.0 21 18-38 52-72 (254)
353 1jbk_A CLPB protein; beta barr 96.8 0.00081 2.8E-08 44.4 3.2 23 16-38 44-66 (195)
354 1rj9_A FTSY, signal recognitio 96.8 0.00067 2.3E-08 49.2 2.9 22 16-37 103-124 (304)
355 1g29_1 MALK, maltose transport 96.8 0.0007 2.4E-08 50.5 3.1 23 17-39 31-53 (372)
356 1v43_A Sugar-binding transport 96.8 0.00072 2.5E-08 50.4 3.1 23 17-39 39-61 (372)
357 1zak_A Adenylate kinase; ATP:A 96.8 0.00059 2E-08 46.9 2.5 22 16-37 6-27 (222)
358 3b9q_A Chloroplast SRP recepto 96.8 0.0007 2.4E-08 49.0 3.0 22 16-37 101-122 (302)
359 1zcb_A G alpha I/13; GTP-bindi 96.8 0.00086 2.9E-08 49.8 3.5 25 12-36 30-54 (362)
360 2yvu_A Probable adenylyl-sulfa 96.8 0.0012 4.3E-08 43.9 4.1 23 15-37 13-35 (186)
361 1sq5_A Pantothenate kinase; P- 96.8 0.00098 3.4E-08 48.3 3.7 23 15-37 80-102 (308)
362 1rz3_A Hypothetical protein rb 96.8 0.001 3.6E-08 45.0 3.6 24 14-37 21-44 (201)
363 2v54_A DTMP kinase, thymidylat 96.8 0.00082 2.8E-08 45.3 3.1 23 16-38 5-27 (204)
364 2ewv_A Twitching motility prot 96.8 0.00077 2.6E-08 50.2 3.1 22 16-37 137-158 (372)
365 3iij_A Coilin-interacting nucl 96.8 0.00079 2.7E-08 44.6 2.9 22 16-37 12-33 (180)
366 2gza_A Type IV secretion syste 96.8 0.0007 2.4E-08 50.2 2.9 24 16-39 176-199 (361)
367 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.0007 2.4E-08 49.6 2.8 23 17-39 173-195 (330)
368 2pbr_A DTMP kinase, thymidylat 96.8 0.00084 2.9E-08 44.8 3.0 21 17-37 2-22 (195)
369 2c95_A Adenylate kinase 1; tra 96.8 0.00087 3E-08 44.8 3.0 22 16-37 10-31 (196)
370 2z0h_A DTMP kinase, thymidylat 96.8 0.00085 2.9E-08 44.9 2.9 21 17-37 2-22 (197)
371 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.0011 3.7E-08 46.8 3.6 22 16-37 5-26 (260)
372 3e70_C DPA, signal recognition 96.7 0.00084 2.9E-08 49.2 3.0 23 15-37 129-151 (328)
373 1gtv_A TMK, thymidylate kinase 96.7 0.00031 1.1E-08 47.8 0.6 21 17-37 2-22 (214)
374 1xjc_A MOBB protein homolog; s 96.7 0.001 3.5E-08 44.0 3.1 22 16-37 5-26 (169)
375 3d31_A Sulfate/molybdate ABC t 96.7 0.00057 1.9E-08 50.5 2.0 23 17-39 28-50 (348)
376 1qf9_A UMP/CMP kinase, protein 96.7 0.0014 4.8E-08 43.6 3.8 22 16-37 7-28 (194)
377 1p9r_A General secretion pathw 96.7 0.00083 2.8E-08 50.9 2.9 22 17-38 169-190 (418)
378 3gd7_A Fusion complex of cysti 96.7 0.00089 3E-08 50.2 3.0 22 17-38 49-70 (390)
379 2bwj_A Adenylate kinase 5; pho 96.7 0.0011 3.6E-08 44.5 3.1 22 16-37 13-34 (199)
380 1in4_A RUVB, holliday junction 96.7 0.0009 3.1E-08 49.0 2.9 22 17-38 53-74 (334)
381 2oap_1 GSPE-2, type II secreti 96.7 0.00089 3E-08 52.0 3.0 23 17-39 262-284 (511)
382 1e6c_A Shikimate kinase; phosp 96.7 0.0011 3.9E-08 43.4 3.1 21 17-37 4-24 (173)
383 2p5t_B PEZT; postsegregational 96.7 0.00091 3.1E-08 47.0 2.7 23 15-37 32-54 (253)
384 1nn5_A Similar to deoxythymidy 96.7 0.0012 4E-08 44.9 3.2 22 16-37 10-31 (215)
385 1iy2_A ATP-dependent metallopr 96.7 0.001 3.5E-08 47.3 3.0 21 18-38 76-96 (278)
386 3kta_A Chromosome segregation 96.7 0.0011 3.8E-08 43.9 3.0 21 17-37 28-48 (182)
387 4e22_A Cytidylate kinase; P-lo 96.7 0.0013 4.3E-08 46.3 3.4 21 16-36 28-48 (252)
388 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0011 3.7E-08 45.4 2.9 21 17-37 25-45 (235)
389 1p5z_B DCK, deoxycytidine kina 96.7 0.00078 2.7E-08 47.6 2.2 26 13-38 22-47 (263)
390 2iyv_A Shikimate kinase, SK; t 96.7 0.0012 4.1E-08 43.8 3.1 21 17-37 4-24 (184)
391 1vht_A Dephospho-COA kinase; s 96.6 0.0015 5.1E-08 44.7 3.6 22 16-37 5-26 (218)
392 1zuh_A Shikimate kinase; alpha 96.6 0.0014 4.9E-08 42.8 3.2 22 16-37 8-29 (168)
393 2vli_A Antibiotic resistance p 96.6 0.00089 3.1E-08 44.3 2.2 22 16-37 6-27 (183)
394 2pez_A Bifunctional 3'-phospho 96.6 0.0015 5E-08 43.3 3.2 22 16-37 6-27 (179)
395 2og2_A Putative signal recogni 96.6 0.0012 4E-08 49.0 3.0 22 16-37 158-179 (359)
396 1oxx_K GLCV, glucose, ABC tran 96.6 0.00056 1.9E-08 50.6 1.3 23 17-39 33-55 (353)
397 1t9h_A YLOQ, probable GTPase E 96.6 0.0038 1.3E-07 45.3 5.5 54 78-134 77-131 (307)
398 1uj2_A Uridine-cytidine kinase 96.6 0.0016 5.4E-08 45.7 3.4 24 14-37 21-44 (252)
399 2yhs_A FTSY, cell division pro 96.6 0.0012 4.3E-08 50.8 3.0 22 16-37 294-315 (503)
400 2p65_A Hypothetical protein PF 96.6 0.001 3.5E-08 43.8 2.3 22 16-37 44-65 (187)
401 1lv7_A FTSH; alpha/beta domain 96.6 0.0013 4.6E-08 46.1 3.0 22 16-37 46-67 (257)
402 3bos_A Putative DNA replicatio 96.6 0.0015 5.1E-08 44.9 3.2 22 16-37 53-74 (242)
403 2obl_A ESCN; ATPase, hydrolase 96.6 0.0014 4.7E-08 48.4 3.1 23 17-39 73-95 (347)
404 4ido_A Atlastin-1; GTPase, GTP 96.5 0.0057 1.9E-07 46.7 6.4 63 13-75 65-151 (457)
405 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0013 4.4E-08 50.4 2.8 23 17-39 140-162 (460)
406 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.0016 5.6E-08 42.1 2.9 19 18-36 26-44 (149)
407 1cr0_A DNA primase/helicase; R 96.5 0.0014 4.8E-08 47.0 2.8 21 17-37 37-57 (296)
408 2w58_A DNAI, primosome compone 96.5 0.0018 6.3E-08 43.6 3.2 22 16-37 55-76 (202)
409 1m7g_A Adenylylsulfate kinase; 96.5 0.0016 5.6E-08 44.3 2.9 22 16-37 26-47 (211)
410 1nij_A Hypothetical protein YJ 96.5 0.0012 4E-08 48.1 2.2 23 16-38 5-27 (318)
411 2cvh_A DNA repair and recombin 96.5 0.0018 6E-08 44.1 2.9 21 17-37 22-42 (220)
412 4eaq_A DTMP kinase, thymidylat 96.5 0.0028 9.7E-08 43.9 4.0 24 14-37 25-48 (229)
413 1n0w_A DNA repair protein RAD5 96.4 0.0019 6.4E-08 44.7 3.0 22 17-38 26-47 (243)
414 1tue_A Replication protein E1; 96.4 0.0015 5E-08 44.7 2.3 21 17-37 60-80 (212)
415 1ltq_A Polynucleotide kinase; 96.4 0.002 6.7E-08 46.3 3.1 22 16-37 3-24 (301)
416 2grj_A Dephospho-COA kinase; T 96.4 0.0027 9.1E-08 42.9 3.6 25 14-38 11-35 (192)
417 3r20_A Cytidylate kinase; stru 96.4 0.0021 7.2E-08 44.8 3.1 23 15-37 9-31 (233)
418 1yqt_A RNAse L inhibitor; ATP- 96.4 0.0027 9.4E-08 49.6 4.0 23 17-39 49-71 (538)
419 3nwj_A ATSK2; P loop, shikimat 96.4 0.0017 5.8E-08 45.7 2.6 22 16-37 49-70 (250)
420 3n70_A Transport activator; si 96.4 0.0023 7.8E-08 41.0 2.9 24 16-39 25-48 (145)
421 3ozx_A RNAse L inhibitor; ATP 96.4 0.0025 8.6E-08 49.8 3.6 23 17-39 27-49 (538)
422 1njg_A DNA polymerase III subu 96.3 0.0022 7.6E-08 43.8 2.9 21 17-37 47-67 (250)
423 2dpy_A FLII, flagellum-specifi 96.3 0.0022 7.6E-08 48.8 3.1 23 17-39 159-181 (438)
424 2chg_A Replication factor C sm 96.3 0.0023 8E-08 43.1 2.9 22 17-38 40-61 (226)
425 3b9p_A CG5977-PA, isoform A; A 96.3 0.0022 7.4E-08 45.9 2.9 23 16-38 55-77 (297)
426 3euj_A Chromosome partition pr 96.3 0.0023 7.8E-08 49.3 3.0 21 17-37 31-51 (483)
427 3h4m_A Proteasome-activating n 96.3 0.0026 8.9E-08 45.2 3.1 23 16-38 52-74 (285)
428 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0025 8.6E-08 44.5 3.0 22 16-37 40-61 (262)
429 3zvl_A Bifunctional polynucleo 96.3 0.004 1.4E-07 47.0 4.2 22 16-37 259-280 (416)
430 3b60_A Lipid A export ATP-bind 96.3 0.0024 8.2E-08 50.3 3.1 23 17-39 371-393 (582)
431 3qf7_A RAD50; ABC-ATPase, ATPa 96.3 0.0026 8.9E-08 47.2 3.1 19 18-36 26-44 (365)
432 3syl_A Protein CBBX; photosynt 96.3 0.0031 1.1E-07 45.3 3.4 23 15-37 67-89 (309)
433 3j16_B RLI1P; ribosome recycli 96.3 0.0033 1.1E-07 49.8 3.8 23 17-39 105-127 (608)
434 1svm_A Large T antigen; AAA+ f 96.2 0.0025 8.7E-08 47.6 2.9 22 16-37 170-191 (377)
435 3cf0_A Transitional endoplasmi 96.2 0.0026 8.8E-08 45.9 2.9 23 16-38 50-72 (301)
436 3b5x_A Lipid A export ATP-bind 96.2 0.0027 9.4E-08 50.0 3.3 22 17-38 371-392 (582)
437 3t15_A Ribulose bisphosphate c 96.2 0.0026 8.9E-08 45.7 2.8 23 16-38 37-59 (293)
438 1d2n_A N-ethylmaleimide-sensit 96.2 0.0047 1.6E-07 43.6 4.0 25 14-38 63-87 (272)
439 1q3t_A Cytidylate kinase; nucl 96.2 0.0035 1.2E-07 43.5 3.2 24 14-37 15-38 (236)
440 1l8q_A Chromosomal replication 96.2 0.0029 9.9E-08 45.9 2.9 22 17-38 39-60 (324)
441 1nlf_A Regulatory protein REPA 96.2 0.0029 9.9E-08 45.0 2.8 21 17-37 32-52 (279)
442 3gmt_A Adenylate kinase; ssgci 96.1 0.0036 1.2E-07 43.5 3.1 24 14-37 7-30 (230)
443 3bk7_A ABC transporter ATP-bin 96.1 0.0043 1.5E-07 49.1 3.9 23 17-39 119-141 (607)
444 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0049 1.7E-07 48.1 4.1 23 17-39 314-336 (538)
445 2yl4_A ATP-binding cassette SU 96.1 0.0025 8.5E-08 50.4 2.4 23 17-39 372-394 (595)
446 4fcw_A Chaperone protein CLPB; 96.1 0.0053 1.8E-07 44.0 4.0 23 16-38 48-70 (311)
447 3ozx_A RNAse L inhibitor; ATP 96.1 0.0043 1.5E-07 48.5 3.7 23 17-39 296-318 (538)
448 3ake_A Cytidylate kinase; CMP 96.1 0.0042 1.4E-07 41.8 3.2 21 17-37 4-24 (208)
449 2px0_A Flagellar biosynthesis 96.1 0.0034 1.2E-07 45.3 2.8 22 16-37 106-127 (296)
450 3bk7_A ABC transporter ATP-bin 96.1 0.0053 1.8E-07 48.7 4.1 23 17-39 384-406 (607)
451 3qf4_B Uncharacterized ABC tra 96.1 0.0029 9.8E-08 50.1 2.6 23 17-39 383-405 (598)
452 1ofh_A ATP-dependent HSL prote 96.1 0.0037 1.3E-07 44.7 3.0 22 16-37 51-72 (310)
453 1sxj_E Activator 1 40 kDa subu 96.1 0.0029 9.8E-08 46.3 2.4 20 18-37 39-58 (354)
454 2qby_A CDC6 homolog 1, cell di 96.0 0.0035 1.2E-07 46.1 2.9 22 16-37 46-67 (386)
455 2dr3_A UPF0273 protein PH0284; 96.0 0.004 1.4E-07 43.0 3.0 20 17-36 25-44 (247)
456 2qmh_A HPR kinase/phosphorylas 96.0 0.0044 1.5E-07 42.2 3.0 24 16-39 35-58 (205)
457 4a82_A Cystic fibrosis transme 96.0 0.0024 8.1E-08 50.3 1.8 23 17-39 369-391 (578)
458 4b4t_K 26S protease regulatory 96.0 0.004 1.4E-07 47.2 3.0 22 16-37 207-228 (428)
459 4b4t_M 26S protease regulatory 96.0 0.004 1.4E-07 47.3 3.0 22 16-37 216-237 (434)
460 1sxj_C Activator 1 40 kDa subu 96.0 0.0039 1.3E-07 45.6 2.9 22 17-38 48-69 (340)
461 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.0041 1.4E-07 45.3 2.9 23 16-38 46-68 (322)
462 3d3q_A TRNA delta(2)-isopenten 96.0 0.0045 1.5E-07 45.5 3.1 22 16-37 8-29 (340)
463 1fnn_A CDC6P, cell division co 96.0 0.0047 1.6E-07 45.6 3.2 22 17-38 46-67 (389)
464 3crm_A TRNA delta(2)-isopenten 95.9 0.0047 1.6E-07 45.1 3.1 22 16-37 6-27 (323)
465 1vma_A Cell division protein F 95.9 0.0046 1.6E-07 44.9 3.0 22 16-37 105-126 (306)
466 4b4t_L 26S protease subunit RP 95.9 0.0045 1.6E-07 47.1 3.0 22 16-37 216-237 (437)
467 3qks_A DNA double-strand break 95.9 0.0054 1.9E-07 41.6 3.1 20 17-36 25-44 (203)
468 3j16_B RLI1P; ribosome recycli 95.9 0.0063 2.1E-07 48.3 3.8 23 18-40 381-403 (608)
469 3qf4_A ABC transporter, ATP-bi 95.9 0.0033 1.1E-07 49.6 2.3 22 17-38 371-392 (587)
470 3eie_A Vacuolar protein sortin 95.9 0.0069 2.4E-07 44.0 3.7 23 15-37 51-73 (322)
471 3u61_B DNA polymerase accessor 95.8 0.022 7.4E-07 41.2 6.3 21 18-38 51-71 (324)
472 1pzn_A RAD51, DNA repair and r 95.8 0.0049 1.7E-07 45.5 2.8 23 16-38 132-154 (349)
473 1sxj_D Activator 1 41 kDa subu 95.8 0.0051 1.8E-07 44.8 2.9 22 17-38 60-81 (353)
474 1c9k_A COBU, adenosylcobinamid 95.8 0.0061 2.1E-07 40.7 3.0 21 18-38 2-22 (180)
475 2ga8_A Hypothetical 39.9 kDa p 95.8 0.0078 2.7E-07 44.5 3.8 23 15-37 24-46 (359)
476 4b4t_J 26S protease regulatory 95.8 0.0055 1.9E-07 46.1 2.9 22 16-37 183-204 (405)
477 2iw3_A Elongation factor 3A; a 95.8 0.0061 2.1E-07 50.8 3.4 23 17-39 463-485 (986)
478 3exa_A TRNA delta(2)-isopenten 95.8 0.0063 2.1E-07 44.3 3.1 22 17-38 5-26 (322)
479 2v1u_A Cell division control p 95.8 0.0048 1.6E-07 45.4 2.6 23 16-38 45-67 (387)
480 3a8t_A Adenylate isopentenyltr 95.8 0.0065 2.2E-07 44.6 3.2 22 17-38 42-63 (339)
481 2r62_A Cell division protease 95.8 0.0024 8.2E-08 45.0 0.9 21 17-37 46-66 (268)
482 3uk6_A RUVB-like 2; hexameric 95.7 0.0061 2.1E-07 44.8 3.1 22 16-37 71-92 (368)
483 3foz_A TRNA delta(2)-isopenten 95.7 0.0094 3.2E-07 43.3 3.8 23 16-38 11-33 (316)
484 2qgz_A Helicase loader, putati 95.7 0.007 2.4E-07 43.8 3.2 22 16-37 153-174 (308)
485 3m6a_A ATP-dependent protease 95.7 0.0058 2E-07 47.8 2.9 22 17-38 110-131 (543)
486 3uc9_A Increased recombination 95.7 0.0096 3.3E-07 41.3 3.6 26 14-39 28-53 (233)
487 2ocp_A DGK, deoxyguanosine kin 95.7 0.0081 2.8E-07 41.7 3.3 22 16-37 3-24 (241)
488 2z4s_A Chromosomal replication 95.7 0.0062 2.1E-07 46.3 2.9 21 17-37 132-152 (440)
489 2qp9_X Vacuolar protein sortin 95.7 0.0066 2.2E-07 44.8 2.9 23 16-38 85-107 (355)
490 2bjv_A PSP operon transcriptio 95.7 0.007 2.4E-07 42.5 3.0 24 16-39 30-53 (265)
491 3pxg_A Negative regulator of g 95.7 0.0063 2.2E-07 46.7 2.9 22 16-37 202-223 (468)
492 3pfi_A Holliday junction ATP-d 95.7 0.0067 2.3E-07 44.1 2.9 23 16-38 56-78 (338)
493 3hws_A ATP-dependent CLP prote 95.6 0.0069 2.4E-07 44.7 3.0 24 15-38 51-74 (363)
494 4edh_A DTMP kinase, thymidylat 95.6 0.0076 2.6E-07 41.3 2.9 22 16-37 7-28 (213)
495 1um8_A ATP-dependent CLP prote 95.6 0.0072 2.4E-07 44.8 3.0 23 16-38 73-95 (376)
496 2qby_B CDC6 homolog 3, cell di 95.6 0.007 2.4E-07 44.6 2.9 22 17-38 47-68 (384)
497 1tf7_A KAIC; homohexamer, hexa 95.6 0.007 2.4E-07 47.1 2.9 19 18-36 42-60 (525)
498 2rcn_A Probable GTPase ENGC; Y 95.6 0.022 7.4E-07 42.2 5.4 46 85-134 128-174 (358)
499 3cr8_A Sulfate adenylyltranfer 95.6 0.0047 1.6E-07 48.4 1.9 24 15-38 369-392 (552)
500 3d8b_A Fidgetin-like protein 1 95.6 0.0084 2.9E-07 44.3 3.2 23 16-38 118-140 (357)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1e-34 Score=202.59 Aligned_cols=144 Identities=36% Similarity=0.656 Sum_probs=124.5
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
.+.+||+|+|+++||||||++++..+.|...+.+|.+.++....+..++..+.+.+|||+|++++..++..+++++++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 45699999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+|||++++++|+.+..|+..+......++|++|||||+|+. ..+.+..++++++++++++.|+.
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~-~~r~V~~~e~~~~a~~~~~~~~e 154 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA-DKRQVSIEEGERKAKELNVMFIE 154 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEE
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH-hcCcccHHHHhhHHHHhCCeeEE
Confidence 99999999999999999999988877789999999999997 66789999999999999987763
No 2
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1e-30 Score=178.51 Aligned_cols=152 Identities=48% Similarity=0.831 Sum_probs=132.0
Q ss_pred CCCCCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhh
Q 031411 5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 84 (160)
Q Consensus 5 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 84 (160)
+.......+..+||+++|++++|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+
T Consensus 12 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 91 (189)
T 2gf9_A 12 SGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAY 91 (189)
T ss_dssp --CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGG
T ss_pred cCCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHh
Confidence 33445677788999999999999999999999988877777777777777788888888999999999999999999999
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+..+|++++|||++++.+++.+..|+..+......+.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 92 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 163 (189)
T 2gf9_A 92 YRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE-DERVVPAEDGRRLADDLGFEFFE 163 (189)
T ss_dssp GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEE
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc-cccCCCHHHHHHHHHHcCCeEEE
Confidence 9999999999999999999999999999988776689999999999996 44566778899999988866553
No 3
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1e-30 Score=178.86 Aligned_cols=149 Identities=46% Similarity=0.820 Sum_probs=128.2
Q ss_pred CCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccC
Q 031411 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (160)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 87 (160)
+....+..+||+|+|++++|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..++.+
T Consensus 14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 93 (191)
T 2a5j_A 14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG 93 (191)
T ss_dssp CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence 35667788999999999999999999999988877777777777777888889988999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+|++++|||++++.+++.+..|+..+......+.|+++++||+|+. ..+.+..+++++++.++++.++.
T Consensus 94 ~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~ 162 (191)
T 2a5j_A 94 AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE-SRRDVKREEGEAFAREHGLIFME 162 (191)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC-CccccCHHHHHHHHHHcCCEEEE
Confidence 9999999999999999999999999988776789999999999996 44567788899999888876543
No 4
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.98 E-value=3.8e-31 Score=182.59 Aligned_cols=147 Identities=45% Similarity=0.872 Sum_probs=121.5
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
....+..+||+|+|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++++..++..+++++
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 45667789999999999999999999999888777778877778778888898889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcce-EEE
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQV-HLV 156 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~-~~~ 156 (160)
|++++|||++++.+++.+..|+..+......+.|+++++||+|+. ..+.+..+++++++..+++ .++
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~ 170 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS-ELREVSLAEAQSLAEHYDILCAI 170 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc-cccccCHHHHHHHHHHcCCCEEE
Confidence 999999999999999999999999988776689999999999997 4456778889999998887 544
No 5
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.98 E-value=3.2e-31 Score=179.88 Aligned_cols=147 Identities=68% Similarity=1.137 Sum_probs=105.3
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCc
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (160)
...+..+||+++|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (183)
T 2fu5_C 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 82 (183)
T ss_dssp CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCC
Confidence 34678899999999999999999999998887777888888888788888998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
++++|||++++.+++.+..|+..+......+.|+++++||+|+. ..+.+..+++++++..+++.++.
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~ 149 (183)
T 2fu5_C 83 GIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN-DKRQVSKERGEKLALDYGIKFME 149 (183)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC-SCCCSCHHHHHHHHHHHTCEEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC-ccCcCCHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999999988766689999999999997 44567788899999988876553
No 6
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=5.1e-31 Score=182.16 Aligned_cols=148 Identities=48% Similarity=0.855 Sum_probs=130.4
Q ss_pred CCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccC
Q 031411 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (160)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 87 (160)
....++..+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++++..++..++++
T Consensus 19 ~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 98 (201)
T 2ew1_A 19 SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRS 98 (201)
T ss_dssp ---CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTT
T ss_pred CccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhc
Confidence 34567888999999999999999999999998887788888888888888899988999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
+|++++|||++++.+++.+..|+..+......+.|+++++||+|+. ....+..+++++++...++.++
T Consensus 99 ~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~ 166 (201)
T 2ew1_A 99 ANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA-ERREVSQQRAEEFSEAQDMYYL 166 (201)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCCEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-cccccCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999999999988776789999999999996 4456778888999888776554
No 7
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=1.4e-30 Score=177.02 Aligned_cols=150 Identities=44% Similarity=0.803 Sum_probs=132.3
Q ss_pred CCCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhcc
Q 031411 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (160)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 86 (160)
++....+..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.
T Consensus 2 ~m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 81 (186)
T 2bme_A 2 HMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR 81 (186)
T ss_dssp --CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTST
T ss_pred CcccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHh
Confidence 45667788999999999999999999999999888777888887888888888988889999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
++|++++|||++++.+++.+..|+..+......+.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 151 (186)
T 2bme_A 82 GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-ADREVTFLEASRFAQENELMFLE 151 (186)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEE
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999988776789999999999996 44567788899999988876653
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.97 E-value=3.9e-30 Score=176.16 Aligned_cols=148 Identities=62% Similarity=1.081 Sum_probs=133.0
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
....+..+||+++|++++|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+
T Consensus 10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 44557789999999999999999999999998888888888888888889999889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
|++++|||++++.+++.+..|+..+......+.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 157 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-TKKVVDYTTAKEFADSLGIPFLE 157 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc-cccccCHHHHHHHHHHcCCcEEE
Confidence 999999999999999999999999988877789999999999997 55667778899999988766554
No 9
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.5e-30 Score=174.04 Aligned_cols=148 Identities=53% Similarity=0.907 Sum_probs=127.4
Q ss_pred CCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccC
Q 031411 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (160)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 87 (160)
+....+..+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 34567788999999999999999999999998887888888888888888999988999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+|++++|||++++.+++.+..|+..+....+ +.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 149 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDP-ERKVVETEDAYKFAGQMGIQLFE 149 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCCEEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCc-hhcccCHHHHHHHHHHcCCeEEE
Confidence 9999999999999999999999999987665 78999999999997 45567778899999888776553
No 10
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.97 E-value=2.7e-30 Score=174.28 Aligned_cols=147 Identities=43% Similarity=0.826 Sum_probs=130.3
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCc
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (160)
...+..+||+++|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 45678899999999999999999999998887777788777777788888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
++++|||++++.+++.+..|+..+......+.|+++++||+|+. ....+..+++++++.++++.++.
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 156 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE-AQRDVTYEEAKQFAEENGLLFLE 156 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEE
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999988776689999999999996 44567788899999988876553
No 11
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=6.2e-30 Score=176.78 Aligned_cols=145 Identities=58% Similarity=1.044 Sum_probs=130.0
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcE
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (160)
..+..+||+|+|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 46788999999999999999999999998887778888888888888889988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
+++|||++++.+++.+..|+..+......+.|+++++||+|+. ..+.+..+++++++..+++.++
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~ 148 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK-DKRVVEYDVAKEFADANKMPFL 148 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCCEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-cccccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999999988776689999999999997 4456778889999988876554
No 12
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=176.52 Aligned_cols=149 Identities=41% Similarity=0.749 Sum_probs=130.2
Q ss_pred CCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccC
Q 031411 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (160)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 87 (160)
....++..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++..++..++..
T Consensus 18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 97 (193)
T 2oil_A 18 GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG 97 (193)
T ss_dssp --CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhcc
Confidence 35667788999999999999999999999988887777787777877888888888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+|++++|||++++.+++.+..|+..+......+.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
T 2oil_A 98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS-QAREVPTEEARMFAENNGLLFLE 166 (193)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc-cccccCHHHHHHHHHHcCCEEEE
Confidence 9999999999999999999999999987766689999999999997 34566778899999888765543
No 13
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.97 E-value=1.2e-29 Score=171.61 Aligned_cols=147 Identities=33% Similarity=0.611 Sum_probs=128.5
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCc
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (160)
......+||+++|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 34567799999999999999999999998888777777777777788888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
++++|||++++.+++.+..|+..+......+.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 153 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL-DARKVTAEDAQTYAQENGLFFME 153 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-ccccCCHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999988776689999999999996 44567788899999888866543
No 14
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.3e-30 Score=175.96 Aligned_cols=149 Identities=34% Similarity=0.650 Sum_probs=128.9
Q ss_pred CCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccC
Q 031411 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (160)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 87 (160)
+...++..+||+++|++++|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..
T Consensus 16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (192)
T 2fg5_A 16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG 95 (192)
T ss_dssp -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence 45667889999999999999999999999988877777888877777778888888899999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+|++++|||++++.+++.+..|+..+......+.|+++++||+|+. ..+.+..+++++++.++++.++.
T Consensus 96 ~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~ 164 (192)
T 2fg5_A 96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS-DIREVPLKDAKEYAESIGAIVVE 164 (192)
T ss_dssp CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHTTTCEEEE
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEE
Confidence 9999999999999999999999999988776689999999999996 44567788899999988876553
No 15
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=3.1e-30 Score=172.82 Aligned_cols=145 Identities=37% Similarity=0.731 Sum_probs=121.3
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
.+..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 46789999999999999999999999888777778888777777888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
++|||++++.+++.+..|+..+......+.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 147 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE-KERHVSIQEAESYAESVGAKHYH 147 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc-cccccCHHHHHHHHHHcCCeEEE
Confidence 999999999999999999999887665689999999999997 44567788899999988865543
No 16
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2e-31 Score=182.39 Aligned_cols=149 Identities=49% Similarity=0.890 Sum_probs=132.7
Q ss_pred CCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccC
Q 031411 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (160)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 87 (160)
....++..+||+|+|++++|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..++++
T Consensus 16 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (191)
T 3dz8_A 16 FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG 95 (191)
T ss_dssp ETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred cccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence 45667788999999999999999999999988887777888777887888888777899999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+|++++|||++++.+++.+..|+..+......+.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 164 (191)
T 3dz8_A 96 AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME-EERVVPTEKGQLLAEQLGFDFFE 164 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-cccccCHHHHHHHHHHcCCeEEE
Confidence 9999999999999999999999999988776789999999999996 55677888899999998876654
No 17
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=177.82 Aligned_cols=149 Identities=43% Similarity=0.817 Sum_probs=122.0
Q ss_pred CCCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhcc
Q 031411 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (160)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 86 (160)
...++.+..+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..++.
T Consensus 18 ~~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 97 (192)
T 2il1_A 18 GSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR 97 (192)
T ss_dssp ----CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred CCCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhc
Confidence 34566788899999999999999999999998887777788887888888888998899999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhc-ceEEE
Q 031411 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTV-QVHLV 156 (160)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (160)
++|++++|||++++.+++.+..|+..+......+.|+++++||+|+. ..+++..+++++++... ++.++
T Consensus 98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~ 167 (192)
T 2il1_A 98 SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE-TDREITRQQGEKFAQQITGMRFC 167 (192)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHTSTTCEEE
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-cccccCHHHHHHHHHhcCCCeEE
Confidence 99999999999999999999999999988777789999999999996 44567778888998874 55443
No 18
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=4.6e-30 Score=175.24 Aligned_cols=147 Identities=42% Similarity=0.807 Sum_probs=126.1
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccccc-ccchhhccC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRG 87 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~ 87 (160)
.......+||+++|++++|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++++. .++..++++
T Consensus 14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (189)
T 1z06_A 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN 93 (189)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcC
Confidence 3455667999999999999999999999988887778888878888888889988999999999999887 788899999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
+|++++|||++++.+++.+..|+..+.... ..+.|+++++||+|+. ..+++..+++++++..+++.++
T Consensus 94 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~ 162 (189)
T 1z06_A 94 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR-SAIQVPTDLAQKFADTHSMPLF 162 (189)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccceeCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999998775 4579999999999996 4456778889999988876544
No 19
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-29 Score=174.59 Aligned_cols=147 Identities=49% Similarity=0.863 Sum_probs=130.1
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCc
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (160)
...+..+||+|+|++++|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 34567899999999999999999999999887777788887787788888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
++++|||++++.+++.+..|+..+......+.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 149 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME-DERVVSSERGRQLADHLGFEFFE 149 (203)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT-TSCCSCHHHHHHHHHHHTCEEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC-cccccCHHHHHHHHHHCCCeEEE
Confidence 99999999999999999999999988776689999999999997 44567788899999988776543
No 20
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=4.2e-30 Score=177.18 Aligned_cols=148 Identities=43% Similarity=0.778 Sum_probs=119.8
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
....+..+||+|+|++++|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 98 (200)
T 2o52_A 19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 98 (200)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccC
Confidence 45567889999999999999999999999888777778888778778888898889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
|++++|||++++.+++.+..|+..+......+.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 99 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~ 166 (200)
T 2o52_A 99 AGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD-PEREVTFLEASRFAQENELMFLE 166 (200)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc-cccccCHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999988776789999999999996 44567778899999888866543
No 21
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.97 E-value=2.1e-29 Score=168.59 Aligned_cols=145 Identities=35% Similarity=0.648 Sum_probs=128.7
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
....+||+++|++|+|||||++++.++.+...+.++.+.++....+..++....+.+||+||++.+...+..++.++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45679999999999999999999999988777788888777778888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
++|||++++.+++.+..|+..+......+.|+++++||+|+. ...++..+++++++..+++.++.
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~ 147 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT-DVREVMERDAKDYADSIHAIFVE 147 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc-cccccCHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999988766789999999999997 44567778899999888876553
No 22
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=1.1e-29 Score=169.88 Aligned_cols=144 Identities=40% Similarity=0.697 Sum_probs=127.7
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...+||+++|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999998887777778777777778888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+|||++++.+++.+..|+..+......++|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 147 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA-NKRAVDFQEAQSYADDNSLLFME 147 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc-cccccCHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999988766689999999999996 44567778899999888876653
No 23
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-29 Score=169.38 Aligned_cols=144 Identities=36% Similarity=0.613 Sum_probs=127.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 35899999999999999999999988877777888877877888889888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--cCCChhHHHHHhhhcceEEEE
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK--REAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~ 157 (160)
|||++++.+++.+..|+..+......+.|+++++||+|+.+.. ..+..+++++++..+++.++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~ 147 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFE 147 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEE
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 9999999999999999999988776789999999999996432 567778889999888776543
No 24
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=8e-30 Score=174.08 Aligned_cols=146 Identities=22% Similarity=0.342 Sum_probs=118.9
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
.......+||+++|++|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||++|++.+..+ ..+++.+
T Consensus 15 ~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~ 92 (187)
T 3c5c_A 15 YFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWA 92 (187)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTC
T ss_pred HhCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhC
Confidence 34456679999999999999999999999888877777777554 455677888899999999999988775 6788999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
|++++|||++++++++.+..|+..+.... ..+.|+++++||+|+. ..+.+..+++++++.++++.++.
T Consensus 93 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e 163 (187)
T 3c5c_A 93 HAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA-QYRQVTKAEGVALAGRFGCLFFE 163 (187)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCEEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh-hcCccCHHHHHHHHHHcCCcEEE
Confidence 99999999999999999999999997764 2488999999999996 45667888999999998876653
No 25
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=7.1e-30 Score=176.85 Aligned_cols=148 Identities=21% Similarity=0.508 Sum_probs=119.5
Q ss_pred CCCCCCCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccch
Q 031411 3 APPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT 82 (160)
Q Consensus 3 ~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 82 (160)
+++..|...++..+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+..++.
T Consensus 16 ~~~~~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 94 (205)
T 1gwn_A 16 PRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRP 94 (205)
T ss_dssp -----------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGG
T ss_pred CCCCCCCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHH
Confidence 34455666678889999999999999999999999988777777776554 45566777789999999999999999999
Q ss_pred hhccCCcEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------ccCCChhHHHHHhhh
Q 031411 83 AYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDES-----------KREAPFCLHETILLT 150 (160)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~-----------~~~~~~~~~~~~~~~ 150 (160)
.++.++|++++|||++++.+++.+ ..|+..+....+ +.|+++++||+|+.+. .+.+..+++++++++
T Consensus 95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (205)
T 1gwn_A 95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ 173 (205)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHH
Confidence 999999999999999999999998 789998877665 7899999999999642 356788889999988
Q ss_pred cc
Q 031411 151 VQ 152 (160)
Q Consensus 151 ~~ 152 (160)
++
T Consensus 174 ~~ 175 (205)
T 1gwn_A 174 IG 175 (205)
T ss_dssp HT
T ss_pred cC
Confidence 76
No 26
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=7.1e-30 Score=177.88 Aligned_cols=149 Identities=19% Similarity=0.439 Sum_probs=122.4
Q ss_pred CCCCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhc
Q 031411 6 ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 85 (160)
Q Consensus 6 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 85 (160)
.+........+||+|+|++++|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||++|++++..++..++
T Consensus 18 ~~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 96 (214)
T 3q3j_B 18 GRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCY 96 (214)
T ss_dssp ---------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGC
T ss_pred ccCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHc
Confidence 34445666789999999999999999999999988887778877655 45566777788999999999999999999999
Q ss_pred cCCcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------ccCCChhHHHHHhhhcce
Q 031411 86 RGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKILVGNKADMDES-----------KREAPFCLHETILLTVQV 153 (160)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~ 153 (160)
+++|++++|||++++.+++. +..|+..+....+ +.|+++++||+|+.+. .+.+..+++++++.++++
T Consensus 97 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 175 (214)
T 3q3j_B 97 SDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 175 (214)
T ss_dssp TTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred CCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence 99999999999999999998 7899999988765 8999999999999743 367888999999999988
Q ss_pred -EEE
Q 031411 154 -HLV 156 (160)
Q Consensus 154 -~~~ 156 (160)
.++
T Consensus 176 ~~~~ 179 (214)
T 3q3j_B 176 EIYL 179 (214)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 554
No 27
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=1.9e-29 Score=171.12 Aligned_cols=147 Identities=29% Similarity=0.462 Sum_probs=127.2
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
.......+||+++|++|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||++.+..++..+++++
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 44566789999999999999999999999888877777777655 66778888888999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
|++++|||++++.+++.+..|+..+... ...+.|+++++||+|+. ..+.+..+++++++..+++.++.
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~ 159 (183)
T 3kkq_A 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM-HLRKVTRDQGKEMATKYNIPYIE 159 (183)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS-TTCCSCHHHHHHHHHHHTCCEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch-hccCcCHHHHHHHHHHhCCeEEE
Confidence 9999999999999999999999998764 34688999999999997 56678888999999988876553
No 28
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.97 E-value=1.1e-29 Score=170.04 Aligned_cols=141 Identities=59% Similarity=1.050 Sum_probs=119.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999988877777888777777788888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|||++++.+++.+..|+..+......+.|+++++||+|+. ...+..+++++++.++++.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~ 142 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFI 142 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT--TCCSCHHHHHHHHHHHTCCEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC--cCccCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999988876689999999999993 345677888999988876554
No 29
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=4.1e-29 Score=169.18 Aligned_cols=143 Identities=28% Similarity=0.433 Sum_probs=125.0
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..+++++|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4679999999999999999999998888877778777665 667788898899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+|||++++++++.+..|+..+..... .+.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 147 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH-MERVISYEEGKALAESWNAAFLE 147 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch-hcceecHHHHHHHHHHhCCcEEE
Confidence 99999999999999999999876543 578999999999996 56778889999999999887654
No 30
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=1.5e-29 Score=170.60 Aligned_cols=145 Identities=36% Similarity=0.644 Sum_probs=128.2
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
....+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 34669999999999999999999999888877788888888888888899889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
++|||++++.+++.+..|+..+......+.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 155 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS-DKRQVSTEEGERKAKELNVMFIE 155 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG-GGCCSCHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-ccCcCCHHHHHHHHHHcCCeEEE
Confidence 999999999999999999999987766689999999999997 44567778888898888765543
No 31
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=177.41 Aligned_cols=146 Identities=50% Similarity=0.853 Sum_probs=122.2
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCc
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (160)
...+..+||+|+|++++|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|
T Consensus 8 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 87 (223)
T 3cpj_B 8 YDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAV 87 (223)
T ss_dssp --CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred CCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence 34578899999999999999999999999888777788887888888888998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
++++|||++++.+++.+..|+..+......+.|+++++||+|+. ..+.+..+++++++..+++.++
T Consensus 88 ~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~ 153 (223)
T 3cpj_B 88 GALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA-HLRAVPTEESKTFAQENQLLFT 153 (223)
T ss_dssp EEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG-GGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-cccccCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999999988766689999999999997 4456777889999988887664
No 32
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.8e-29 Score=169.64 Aligned_cols=147 Identities=46% Similarity=0.846 Sum_probs=120.5
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
...+..+||+++|++++|||||++++.++.+. ..+.++.+.++....+..++..+.+.+||+||++.+...+..++.++
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 44577899999999999999999999988874 45667777777777778899889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
|++++|||++++.+++.+..|+..+......+.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA-HERVVKREDGEKLAKEYGLPFME 152 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT-SCCCSCHHHHHHHHHHHTCCEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC-cccccCHHHHHHHHHHcCCeEEE
Confidence 999999999999999999999999988776789999999999997 44567778889999887765543
No 33
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=1.7e-29 Score=168.73 Aligned_cols=143 Identities=34% Similarity=0.630 Sum_probs=126.3
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
+..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999998888777888887888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+|||++++.+++.+..|+..+.... .+.|+++++||+|+. ..+.+..+++++++.++++.++.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLL-DDSCIKNEEAEGLAKRLKLRFYR 145 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccC-cccccCHHHHHHHHHHcCCeEEE
Confidence 9999999999999999999997766 478999999999997 44556778889999888876554
No 34
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=4.2e-30 Score=176.91 Aligned_cols=149 Identities=42% Similarity=0.730 Sum_probs=117.0
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
....+..+||+|+|++++|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 101 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA 101 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence 34455679999999999999999999999888777777777777778888899889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-----CccCCChhHHHHHhhhcceEEEE
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE-----SKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
|++++|||++++.+++.+..|+..+......+.|+++++||+|+.+ ....+..+++++++..+++.++.
T Consensus 102 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 175 (199)
T 2p5s_A 102 DGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCE 175 (199)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEE
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEE
Confidence 9999999999999999999999999887666899999999999953 34567788899999988876653
No 35
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=173.69 Aligned_cols=148 Identities=24% Similarity=0.323 Sum_probs=118.7
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccc-cchhhccC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRG 87 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~ 87 (160)
....+..+||+|+|++|||||||+++|.+........++.+.+.....+..++..+.+.+||++|+..+.. ++..++..
T Consensus 17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 96 (195)
T 3cbq_A 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT 96 (195)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence 44556789999999999999999999975443333344555566667778899889999999999987664 67778899
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+|++++|||++++.+|+.+..|+..+..... .+.|+++++||+|+. ..+.+..+++++++..+++.++.
T Consensus 97 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~a~~~~~~~~e 166 (195)
T 3cbq_A 97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-RSREVSLEEGRHLAGTLSCKHIE 166 (195)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc-ccCCcCHHHHHHHHHHhCCEEEE
Confidence 9999999999999999999999999877654 478999999999997 45567888899999888765543
No 36
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=7.7e-30 Score=177.62 Aligned_cols=147 Identities=46% Similarity=0.856 Sum_probs=125.2
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCE----------EEEEEEecCCCccccc
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK----------RIKLQIWDTAGQERFR 78 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~D~~g~~~~~ 78 (160)
...+++.+||+|+|++++|||||+++|.++.+...+.++.+.++....+.+++. .+.+.+||+||++.+.
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 98 (217)
T 2f7s_A 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR 98 (217)
T ss_dssp --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence 456688899999999999999999999998888777788887777777777665 6899999999999999
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
..+..++..+|++++|||++++.+++.+..|+..+..... .+.|+++++||+|+. ..+.+..+++++++..+++.++
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~ 176 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP-DQREVNERQARELADKYGIPYF 176 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCCEE
T ss_pred hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc-cccccCHHHHHHHHHHCCCcEE
Confidence 9999999999999999999999999999999988866543 578999999999996 4456778889999988876544
No 37
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=6e-29 Score=172.38 Aligned_cols=146 Identities=58% Similarity=1.039 Sum_probs=125.1
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
....+..++|+|+|++++|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+
T Consensus 14 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 34556679999999999999999999999888777788888788888888899889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|++++|||++++.+++.+..|+..+......+.|+++++||+|+. ...+..+++++++..+++.++
T Consensus 94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~ 159 (213)
T 3cph_A 94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFI 159 (213)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS--SCCSCHHHHHHHHHHHTCCEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc--ccccCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999988776689999999999993 445667888889888776544
No 38
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=6.6e-29 Score=169.21 Aligned_cols=141 Identities=19% Similarity=0.283 Sum_probs=118.7
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
.......+||+++|++|+|||||++++.++.+...+.++.+ .+...+.+++..+.+.+||++|++.+. +++++
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 45667789999999999999999999999988776666643 344778889989999999999998766 67889
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC-CCccCCChhHHHHHhhhcc-eEEE
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMD-ESKREAPFCLHETILLTVQ-VHLV 156 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~-~~~~~~~~~~~~~~~~~~~-~~~~ 156 (160)
|++++|||++++.+|+.+..|+..+..... .+.|+++++||+|+. ...+.+..+++++++.+++ +.++
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~ 157 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYY 157 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEE
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEE
Confidence 999999999999999999999999987653 578999999999995 3456788899999999886 5544
No 39
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.9e-29 Score=170.07 Aligned_cols=150 Identities=45% Similarity=0.791 Sum_probs=129.0
Q ss_pred CCCCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhc
Q 031411 6 ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 85 (160)
Q Consensus 6 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 85 (160)
+.+.......+||+|+|++++|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++
T Consensus 6 ~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 85 (195)
T 1x3s_A 6 SGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYY 85 (195)
T ss_dssp ---CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHH
T ss_pred CCcccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHh
Confidence 33455556789999999999999999999999988877788888888888888899889999999999999999999999
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+.+|++++|||++++.+++.+..|+..+..... .+.|+++++||+|+. ...+..+++++++..+++.++.
T Consensus 86 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
T 1x3s_A 86 RGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIE 156 (195)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHHHHHHHHTTCEEEE
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc--ccccCHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999999977542 578999999999994 3456778899999988876653
No 40
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.97 E-value=9.7e-29 Score=166.59 Aligned_cols=143 Identities=36% Similarity=0.660 Sum_probs=121.5
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcE
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (160)
..+..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 45677999999999999999999999988887788888888878888889988999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCccCCChhHHHHHhh-hcceEE
Q 031411 91 ILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMDESKREAPFCLHETILL-TVQVHL 155 (160)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~-~~~~~~ 155 (160)
+++|||++++.+++.+..|+..+..... .+.|+++++||+|+. ...+..+++++++. ..++.+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~ 150 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPY 150 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS--SCSSCHHHHHHHHHHTTCCCE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc--ccccCHHHHHHHHHhcCCceE
Confidence 9999999999999999999999977653 578999999999996 45667788888887 344433
No 41
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=2.3e-29 Score=170.17 Aligned_cols=139 Identities=38% Similarity=0.707 Sum_probs=108.4
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEEC-CEEEEEEEecCCCcccccccchhhccCCc
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (160)
..+..+||+++|++|+|||||++++.++.+...+.++.+.++....+..+ +..+.+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 34567999999999999999999999988887777887777777777776 55678999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCccCCChhHHHHHhh
Q 031411 90 GILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMDESKREAPFCLHETILL 149 (160)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~ 149 (160)
++++|||++++.+++.+..|+..+..... .+.|+++++||+|+.+..+.+..+++++++.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~ 147 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK 147 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH
Confidence 99999999999999999999999877653 5789999999999975666778888999887
No 42
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=8.3e-29 Score=167.25 Aligned_cols=145 Identities=32% Similarity=0.525 Sum_probs=124.2
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcE
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (160)
+....+||+++|++|+|||||++++.++.+...+.++.+..+. ..+..++..+.+.+||+||++.+..++..++..+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 3456799999999999999999999998887777777765554 667788888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 91 ILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+++|||++++.+++.+..|+..+... ...+.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~ 150 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE-SQRQVPRSEASAFGASHHVAYFE 150 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-cccccCHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999998554 44688999999999996 44567788899999888776543
No 43
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=8.5e-29 Score=169.59 Aligned_cols=144 Identities=27% Similarity=0.540 Sum_probs=122.9
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
.......+||+++|++|+|||||++++.++.+...+.++.+..+. ..+..++..+.+.+||+||++.+..++..+++++
T Consensus 17 ~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 95 (194)
T 3reg_A 17 IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS 95 (194)
T ss_dssp ----CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred ccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCC
Confidence 445667899999999999999999999999887777777775544 4677888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-ccCCChhHHHHHhhhcceE
Q 031411 89 MGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDES-KREAPFCLHETILLTVQVH 154 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~-~~~~~~~~~~~~~~~~~~~ 154 (160)
|++++|||++++.+++.+ ..|+..+..... +.|+++++||+|+.+. ...+..+++++++..+++.
T Consensus 96 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (194)
T 3reg_A 96 DVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCV 162 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCS
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCC
Confidence 999999999999999997 678888876654 7999999999999743 4678889999999998865
No 44
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.97 E-value=2.7e-29 Score=169.48 Aligned_cols=144 Identities=32% Similarity=0.535 Sum_probs=122.6
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECC-EEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
...+||+++|++++|||||++++.++.+...+.++.+.++....+..++ ..+.+.+||+||++.+...+..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4569999999999999999999999888777777877777778888876 678999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC--CCCc-EEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHAS--DNVN-KILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p-i~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
++|||++++.+++.+..|+..+..... .+.| +++++||+|+. ..+.+..+++++++..+++.++.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 151 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE-HMRTIKPEKHLRFCQENGFSSHF 151 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc-cccccCHHHHHHHHHHcCCcEEE
Confidence 999999999999999999998876432 1344 89999999996 44567778899999888765543
No 45
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=6.9e-29 Score=168.83 Aligned_cols=144 Identities=22% Similarity=0.531 Sum_probs=120.6
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcE
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (160)
..+..+||+++|++++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++.++|+
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 345679999999999999999999999888777677776544 4556778888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------ccCCChhHHHHHhhhcc-eEEE
Q 031411 91 ILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDES-----------KREAPFCLHETILLTVQ-VHLV 156 (160)
Q Consensus 91 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~ 156 (160)
+++|||++++.+++.+ ..|+..+....+ +.|+++++||+|+.+. .+.+..+++++++.+++ +.++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 159 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI 159 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEE
Confidence 9999999999999998 689988877655 7899999999999743 25678889999998876 3443
No 46
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=5.5e-29 Score=171.57 Aligned_cols=146 Identities=25% Similarity=0.427 Sum_probs=119.2
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCc
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (160)
.+....+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+..++..+++++|
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 3445689999999999999999999999988877777776555 555566666789999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 90 GILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
++++|||++++.+++.+..|+..+.... ..++|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~ 165 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS-PEREVQAVEGKKLAESWGATFME 165 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc-cccccCHHHHHHHHHHhCCeEEE
Confidence 9999999999999999999999997653 3478999999999997 55677888899999998886654
No 47
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=9.9e-29 Score=168.60 Aligned_cols=146 Identities=47% Similarity=0.855 Sum_probs=125.4
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEE-EEEEEECCE---------EEEEEEecCCCccccccc
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK-IRTIELDGK---------RIKLQIWDTAGQERFRTI 80 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~D~~g~~~~~~~ 80 (160)
..+..+||+|+|++|+|||||+++|.++.+...+.++.+.++. ...+..++. .+.+.+||+||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4677899999999999999999999998887777777777766 556666655 689999999999999999
Q ss_pred chhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+..++.++|++++|||++++.+++.+..|+..+..... .+.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 163 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE-DQRAVKEEEARELAEKYGIPYFE 163 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-cccccCHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999987664 588999999999996 44567778899999887765543
No 48
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=8e-30 Score=176.01 Aligned_cols=145 Identities=21% Similarity=0.452 Sum_probs=94.9
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeeeEEEEEEEECCE--EEEEEEecCCCcccccccchhhccCC
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIELDGK--RIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
...++|+|+|++|+|||||+++|.++ .+...+.++.+.++....+..++. .+.+.+||+||++.+..++..++.++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56799999999999999999999988 777677777776777778888876 78999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
|++++|||++++.+++.+..|+..+..... .+.|+++++||+|+.+..+.+..+++++++.++++.++.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~ 169 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFD 169 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999988766 689999999999997425667788999999988876543
No 49
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=1.2e-28 Score=164.99 Aligned_cols=142 Identities=25% Similarity=0.329 Sum_probs=110.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccc-cchhhccCCcEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAMGILL 93 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~ 93 (160)
.+||+++|++|+|||||++++.+..+......+.+.+.....+..++..+.+.+||++|+..+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998776655555566677777888899899999999999988876 67777889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
|||++++++++.+..|+..+..... .+.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 145 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-RSREVSLEEGRHLAGTLSCKHIE 145 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEE
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh-hcccCCHHHHHHHHHHcCCcEEE
Confidence 9999999999999999999987654 478999999999997 55678889999999999886654
No 50
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=179.40 Aligned_cols=146 Identities=63% Similarity=1.097 Sum_probs=122.5
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
....+..+||+|+|++++|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++++
T Consensus 27 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 106 (199)
T 3l0i_B 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 106 (199)
T ss_dssp -CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCC
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcC
Confidence 44567789999999999999999999999988888888888888888888999889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEE
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHL 155 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 155 (160)
|++++|||++++.+++.+..|+..+......+.|+++++||+|+. ....+..+++++++..+++.+
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~ 172 (199)
T 3l0i_B 107 HGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-TKKVVDYTTAKEFADSLGIPF 172 (199)
T ss_dssp SEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC---CCCCSCC-CHHHHTTTCCB
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC-ccccCCHHHHHHHHHHcCCeE
Confidence 999999999999999999999999987776789999999999996 445566677788888777544
No 51
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.5e-28 Score=168.22 Aligned_cols=141 Identities=23% Similarity=0.524 Sum_probs=121.2
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcE
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (160)
+.+..+||+++|++++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++..++..++.++|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 445789999999999999999999999888777677765443 4566777878899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------cCCChhHHHHHhhhcce
Q 031411 91 ILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------REAPFCLHETILLTVQV 153 (160)
Q Consensus 91 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~~ 153 (160)
+++|||++++.+++.+. .|+..+....+ +.|+++++||+|+.+.. +.+..+++++++..+++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 166 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA 166 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCC
Confidence 99999999999999997 79999887765 78999999999997532 46778889999988775
No 52
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.96 E-value=2.9e-28 Score=168.01 Aligned_cols=146 Identities=29% Similarity=0.553 Sum_probs=120.9
Q ss_pred CCCCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhc
Q 031411 6 ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 85 (160)
Q Consensus 6 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 85 (160)
++........+||+++|.+++|||||++++.++.+...+.++.+..+. ..+..++..+.+.+||+||++.+..++..++
T Consensus 16 ~~~~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 94 (201)
T 2gco_A 16 PRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSY 94 (201)
T ss_dssp C-----CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGC
T ss_pred cCCCCCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhc
Confidence 334555678899999999999999999999998887777777765554 4467788888999999999999999999999
Q ss_pred cCCcEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------cCCChhHHHHHhhhcce
Q 031411 86 RGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDESK-----------REAPFCLHETILLTVQV 153 (160)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~~ 153 (160)
+++|++++|||++++.+++.+ ..|+..+....+ +.|+++++||+|+.+.. +.+..+++++++..+++
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 173 (201)
T 2gco_A 95 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA 173 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTC
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCC
Confidence 999999999999999999999 678888877654 78999999999997432 45777888999988776
No 53
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=2.1e-28 Score=168.46 Aligned_cols=146 Identities=27% Similarity=0.499 Sum_probs=114.6
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
.......+||+++|++|+|||||++++.++.+...+.++.+.. ....+..++..+.+.+||+||++++..++..++.++
T Consensus 14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (201)
T 2q3h_A 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDN-FSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92 (201)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEE-EEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccce-eEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence 4456778999999999999999999999988776666766543 345677788888999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------ccCCChhHHHHHhhhcce-EE
Q 031411 89 MGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES-----------KREAPFCLHETILLTVQV-HL 155 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~ 155 (160)
|++++|||++++.+++.+. .|+..+....+ +.|+++++||+|+.+. ...+..+++++++..+++ .+
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY 171 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 9999999999999999997 79999887765 8999999999999743 356778889999988776 44
Q ss_pred E
Q 031411 156 V 156 (160)
Q Consensus 156 ~ 156 (160)
+
T Consensus 172 ~ 172 (201)
T 2q3h_A 172 I 172 (201)
T ss_dssp E
T ss_pred E
Confidence 3
No 54
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=3e-28 Score=167.96 Aligned_cols=147 Identities=31% Similarity=0.503 Sum_probs=123.7
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
.......++|+|+|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++..+
T Consensus 8 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (206)
T 2bov_A 8 GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 86 (206)
T ss_dssp ---CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhC
Confidence 34455679999999999999999999999887776666666443 45677788888999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
|++++|||++++.+++.+..|+..+..... .+.|+++++||+|+. ...++..+++++++..+++.++.
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 155 (206)
T 2bov_A 87 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQWNVNYVE 155 (206)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc-ccccccHHHHHHHHHHhCCeEEE
Confidence 999999999999999999999999987653 578999999999997 44567788899999888765543
No 55
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.96 E-value=2e-28 Score=169.05 Aligned_cols=143 Identities=34% Similarity=0.654 Sum_probs=121.9
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcE
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (160)
..+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++.++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 34567999999999999999999999998887788888888888888888888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCccCCChhHHHHHhh-hcceEE
Q 031411 91 ILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKILVGNKADMDESKREAPFCLHETILL-TVQVHL 155 (160)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~-~~~~~~ 155 (160)
+++|||++++.+++.+..|+..+..... .+.|+++++||+|+. ...+..+++++++. ..++.+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~ 151 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQVATKRAQAWCYSKNNIPY 151 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS--CCCSCHHHHHHHHHHTTSCCE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc--ccccCHHHHHHHHHhcCCceE
Confidence 9999999999999999999999876543 478999999999996 34566778888887 444443
No 56
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.96 E-value=5.9e-28 Score=164.73 Aligned_cols=149 Identities=27% Similarity=0.425 Sum_probs=110.6
Q ss_pred CCCCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhc
Q 031411 6 ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 85 (160)
Q Consensus 6 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 85 (160)
+.........+||+++|.+|+|||||+++|.++.+...+.++.+.. ....+..++..+.+.+||+||++.+...+..++
T Consensus 12 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 90 (190)
T 3con_A 12 ENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 90 (190)
T ss_dssp -------CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------C
T ss_pred ccccccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhh
Confidence 3334455567999999999999999999999888776666665533 345677788888999999999999999999999
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
..+|++++|||++++.+++.+..|+..+..... .+.|+++++||+|+.+ ..+..+++++++.++++.++.
T Consensus 91 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 3con_A 91 RTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAKSYGIPFIE 161 (190)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEE
T ss_pred CcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc--ccCCHHHHHHHHHHcCCeEEE
Confidence 999999999999999999999999999877653 5789999999999964 556778899999888765543
No 57
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.96 E-value=6.2e-28 Score=165.75 Aligned_cols=141 Identities=31% Similarity=0.566 Sum_probs=121.5
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEE----------------------------
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------------------- 63 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 63 (160)
.+..+||+|+|++++|||||+++|.+..+...+.++.+.++....+..++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3457999999999999999999999998887778888777777777776655
Q ss_pred ---------EEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 64 ---------IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 64 ---------~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
..+.+||+||++.+...+..++..+|++++|||++++.+++.+..|+..+..... .|+++++||+|+
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D~-- 159 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKIDK-- 159 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTTC--
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCCc--
Confidence 7899999999999999999999999999999999999999999999999977644 899999999993
Q ss_pred CccCCChhHHHHHhhhcceEEE
Q 031411 135 SKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
....+..+++++++.++++.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~ 181 (208)
T 3clv_A 160 NKFQVDILEVQKYAQDNNLLFI 181 (208)
T ss_dssp C-CCSCHHHHHHHHHHTTCEEE
T ss_pred ccccCCHHHHHHHHHHcCCcEE
Confidence 5567788999999998887655
No 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.96 E-value=3.8e-28 Score=164.81 Aligned_cols=145 Identities=31% Similarity=0.512 Sum_probs=122.3
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcE
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 90 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 90 (160)
.....+||+++|++++|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++..+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 344579999999999999999999999887766666665443 4556778888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 91 ILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+++|||++++.+++.+..|+..+..... .+.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 159 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQWNVNYVE 159 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccCccCHHHHHHHHHHcCCeEEE
Confidence 9999999999999999999999977654 578999999999996 44567788899999988876553
No 59
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.96 E-value=4.6e-28 Score=161.65 Aligned_cols=140 Identities=31% Similarity=0.536 Sum_probs=119.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++.++|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999888777777766443 35566777788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhc-ceEEE
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTV-QVHLV 156 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (160)
||++++.+++.+..|+..+.... ..+.|+++++||+|+. ..+.+..+++++++..+ ++.++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 144 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE-DERVVGKEQGQNLARQWCNCAFL 144 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTSCEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc-ccccCCHHHHHHHHHHccCCcEE
Confidence 99999999999999999987753 3588999999999997 44567788889998876 55444
No 60
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.96 E-value=8.6e-28 Score=161.55 Aligned_cols=142 Identities=27% Similarity=0.395 Sum_probs=108.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccc--ccccchhhccCCcEE
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTITTAYYRGAMGI 91 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~~~~~~~~~~~ 91 (160)
..+||+++|++|+|||||+++|.+..+...+ ++.+.+.....+..++..+.+.+||+||+.. +..+...++..+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 4689999999999999999999988765443 3344556667778888888999999999887 556667788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
++|||++++.+++.+..|+..+.... ..+.|+++++||+|+. ..+.+..+++++++..+++.++.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~ 147 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA-RCREVSVEEGRACAVVFDCKFIE 147 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT-TTCCSCHHHHHHHHHHHTSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc-cccccCHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999887653 3478999999999997 44567778888898888765543
No 61
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.96 E-value=7e-28 Score=160.52 Aligned_cols=140 Identities=32% Similarity=0.531 Sum_probs=119.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.+||+++|++|+|||||++++.++.+...+.++.+. .....+..++..+.+.+||+||++.+..++..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 589999999999999999999998877666666653 3456677888888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
||++++.+++.+..|+..+..... .+.|+++++||+|+. ...++..+++++++.++++.++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE-SEREVSSSEGRALAEEWGCPFM 143 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTSCEE
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc-ccccCCHHHHHHHHHHhCCCEE
Confidence 999999999999999999877543 578999999999996 4456777888899988775544
No 62
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=7.3e-28 Score=160.55 Aligned_cols=141 Identities=32% Similarity=0.538 Sum_probs=118.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++..+|++++|
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999999887766666665443 45567788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
||++++.+++.+..|+..+..... .+.|+++++||+|+. ...++..+++++++..+++.++.
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRADQWNVNYVE 145 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTCEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc-ccCccCHHHHHHHHHHcCCeEEE
Confidence 999999999999999999977654 578999999999997 44557788899999888775543
No 63
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=1.7e-27 Score=160.80 Aligned_cols=137 Identities=20% Similarity=0.297 Sum_probs=111.6
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...+||+++|++++|||||++++.++.+.. +.++.+. .+...+..++..+.+.+||++|+++ ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESE-QYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSS-EEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcce-eEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 456999999999999999999999988775 5566553 3456777888889999999999876 45778899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCC-CccCCChhHHHHHhhhc-ceEEE
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQH---ASDNVNKILVGNKADMDE-SKREAPFCLHETILLTV-QVHLV 156 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~pi~vv~~K~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~ 156 (160)
+|||++++++++.+..|+..+... ...+.|+++++||+|+.+ ..+.+..+++++++..+ ++.++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~ 146 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYY 146 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEE
Confidence 999999999999999987666543 235789999999999952 45677888999998876 45444
No 64
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.96 E-value=6.7e-28 Score=167.78 Aligned_cols=142 Identities=32% Similarity=0.602 Sum_probs=101.0
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...+||+++|++|+|||||+++|.++.+...+.++... .....+..++..+.+.+||+||++.+..++..++.++|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFE-RYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCE-EEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccce-eEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 45799999999999999999999998877666666643 33456778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------cCCChhHHHHHhhhcce-EEE
Q 031411 93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------REAPFCLHETILLTVQV-HLV 156 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~ 156 (160)
+|||++++.+++.+. .|+..+..... +.|+++++||+|+.+.. +.+..+++++++..+++ .++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 186 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYL 186 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEE
Confidence 999999999999997 69988877664 78999999999997442 36777889999988876 443
No 65
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.8e-28 Score=166.84 Aligned_cols=139 Identities=31% Similarity=0.583 Sum_probs=113.6
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...+||+++|++|+|||||++++.++.+...+.++.+..+. ..+..++..+.+.+||+||++.+..++..++.++|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 56789999999999999999999998887766666665443 44677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------cCCChhHHHHHhhhcce
Q 031411 93 LVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDESK-----------REAPFCLHETILLTVQV 153 (160)
Q Consensus 93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~~ 153 (160)
+|||++++.+++.+ ..|+..+....+ +.|+++++||+|+.+.. +.+..+++++++...++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 173 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQA 173 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCC
Confidence 99999999999998 678888877654 78999999999996432 45677888899988776
No 66
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.96 E-value=1.8e-27 Score=161.47 Aligned_cols=139 Identities=28% Similarity=0.553 Sum_probs=119.2
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...+||+++|++|+|||||++++.++.+...+.++.+.. ....+..++..+.+.+||+||++.+..++..++.++|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE-EEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccce-eEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 357999999999999999999999888776666666533 3456677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------ccCCChhHHHHHhhhcce
Q 031411 93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES-----------KREAPFCLHETILLTVQV 153 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~ 153 (160)
+|||++++.+++.+. .|+..+....+ +.|+++++||+|+.+. .+.+..+++++++..+++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 153 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 153 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCC
Confidence 999999999999997 69988887766 8899999999999643 256778889999988875
No 67
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.96 E-value=1.9e-27 Score=158.70 Aligned_cols=140 Identities=27% Similarity=0.360 Sum_probs=98.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.+||+++|++|+|||||++++.+...... .++.+.. ....+..++..+.+.+||++|++.+..++..++..+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHT-YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CE-EEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccc-eEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 47999999999999999999987665422 2333322 245667888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
||++++.+++.+..|+..+.... ..+.|+++++||+|+. ....+..+++++++..+++.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-RSREVSVDEGRACAVVFDCKFIE 142 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC-SSCCSCHHHHHHHHHHTTCEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc-cccccCHHHHHHHHHHhCCcEEE
Confidence 99999999999999999987653 3578999999999997 45678888899999988876553
No 68
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.96 E-value=3.8e-27 Score=160.22 Aligned_cols=142 Identities=29% Similarity=0.501 Sum_probs=118.9
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
+..+||+++|++|+|||||+++|.++.+...+.++.. +.....+..++..+.+.+||+||++.+..++..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999999887766666664 445566778888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+|||++++.+++.+..|+..+.... ..+.|+++++||+|+. ...+..+++++++..+++.++.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~ 144 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP--SRTVDTKQAQDLARSYGIPFIE 144 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS--SCSSCHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc--ccccCHHHHHHHHHHcCCeEEE
Confidence 9999999999999999999997754 3578999999999996 3456778889999888766543
No 69
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.96 E-value=3.6e-28 Score=169.71 Aligned_cols=145 Identities=28% Similarity=0.551 Sum_probs=122.8
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
.......+||+++|.+|+|||||+++++.+.+...+.++.+.+........++..+.+.+||+||++.+..++..++.++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 44566779999999999999999999887776667777777778878888888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
|++++|||++++.+++.+..|+..+..... +.|+++++||+|+.+... .++..+++..+++.++.
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~ 153 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYD 153 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS---CGGGCCHHHHHTCEEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc---cHHHHHHHHHcCCEEEE
Confidence 999999999999999999999999988765 889999999999964322 23556666676665543
No 70
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.96 E-value=6.8e-28 Score=167.86 Aligned_cols=146 Identities=29% Similarity=0.513 Sum_probs=120.6
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEEC-CEEEEEEEecCCCcccccccchhhccCCc
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (160)
.....+||+++|.+|+|||||+++|.++.+...+.++.+........... +..+.+.+||+||++.+..++..++.++|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 34567999999999999999999999888877777777766555555444 44488999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
++++|||++++.+++.+..|+..+......+.|+++++||+|+. ....+..+++++++...++.++.
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 153 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK-NRQKISKKLVMEVLKGKNYEYFE 153 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHHHHTTTCCCEEEE
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-cccccCHHHHHHHHHHcCCcEEE
Confidence 99999999999999999999999988877779999999999997 45567778888999888765543
No 71
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.3e-27 Score=164.94 Aligned_cols=145 Identities=23% Similarity=0.350 Sum_probs=113.7
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCC--CCCccccceeeeEEEEEEEECCEEEEEEEecCCCccc-ccccchhhcc
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYR 86 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~ 86 (160)
......+||+|+|++|+|||||++++.+.. +... .++.+.++....+.+++..+.+.+||++|+.. +..+...+++
T Consensus 32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~ 110 (211)
T 2g3y_A 32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ 110 (211)
T ss_dssp ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHh
Confidence 345667999999999999999999999643 2333 23355566667778899889999999999876 4455667788
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
.++++++|||++++.+|+.+..|+..+... ...++|+++|+||+|+. ..+.+..++++.++..+++.++
T Consensus 111 ~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~-~~r~v~~~e~~~~a~~~~~~~~ 180 (211)
T 2g3y_A 111 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSEGRACAVVFDCKFI 180 (211)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEE
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh-cCceEeHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999888654 23478999999999997 4456777888888888887655
No 72
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.6e-27 Score=163.61 Aligned_cols=142 Identities=31% Similarity=0.459 Sum_probs=120.3
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...+||+++|++++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++. ...+..++..+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4569999999999999999999999888777777776444 45567788889999999999987 667888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+|||++++++++.+..|+..+.... ..+.|+++++||+|+. ..+.+..+++++++.++++.++.
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~ 168 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD-HSRQVSTEEGEKLATELACAFYE 168 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTSEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc-cccccCHHHHHHHHHHhCCeEEE
Confidence 9999999999999999999987754 3588999999999997 44667788899999888866543
No 73
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.96 E-value=1.5e-27 Score=165.47 Aligned_cols=142 Identities=30% Similarity=0.597 Sum_probs=118.2
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...+||+++|++++|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++.++|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4679999999999999999999999888777777766443 455677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-------CCChhHHHHHhhhcce-EEE
Q 031411 93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESKR-------EAPFCLHETILLTVQV-HLV 156 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~-------~~~~~~~~~~~~~~~~-~~~ 156 (160)
+|||++++.+++.+. .|+..+....+ +.|+++++||+|+.+... .+..+++++++..+++ .++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 157 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYI 157 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEE
Confidence 999999999999997 79999987765 899999999999863322 3477888999988875 443
No 74
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.9e-27 Score=158.30 Aligned_cols=141 Identities=28% Similarity=0.447 Sum_probs=117.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
..+||+++|++|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||+..+..++..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 358999999999999999999999887766666665433 3455667878899999999999999989999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
|||++++.+++.+..|+..+..... .+.|+++++||+|+. ...++..+++++++...++.++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~ 144 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES-PSREVQSSEAEALARTWKCAFM 144 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTCEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc-cccccCHHHHHHHHHHhCCeEE
Confidence 9999999999999999988876542 478999999999996 4455677788888888876554
No 75
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.95 E-value=9.2e-27 Score=154.79 Aligned_cols=140 Identities=29% Similarity=0.474 Sum_probs=118.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 94 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 94 (160)
.+||+++|++|+|||||++++.++.+...+.++.+. .....+..++..+.+.+||+||+..+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccce-EEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 479999999999999999999988877666666553 3345667788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
||++++.+++.+..|+..+..... .+.|+++++||+|+.+ .....+++++++.++++.++.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~ 143 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQDLARSYGIPYIE 143 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh--cccCHHHHHHHHHHcCCeEEE
Confidence 999999999999999999877654 4789999999999974 456778889999888765543
No 76
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.95 E-value=3.8e-27 Score=160.87 Aligned_cols=133 Identities=19% Similarity=0.390 Sum_probs=105.4
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCC-CCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 87 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 87 (160)
.......+||+++|++|+|||||+++|.+.. +...+.++.+ .....+..++ ..+.+||+||++.+...+..++.+
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ 90 (190)
T 2h57_A 15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKE 90 (190)
T ss_dssp ------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGG
T ss_pred ccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhc
Confidence 4455567999999999999999999999877 4555566655 4455566665 689999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCccCCChhHHHHHh
Q 031411 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKILVGNKADMDESKREAPFCLHETIL 148 (160)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~ 148 (160)
+|++++|||++++.+++.+..|+..+..... .+.|+++++||+|+.+ ....+++.++.
T Consensus 91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~ 151 (190)
T 2h57_A 91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD---AVTSVKVSQLL 151 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT---CCCHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc---CCCHHHHHHHh
Confidence 9999999999999999999999998876543 4789999999999973 33455555555
No 77
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=9.7e-27 Score=159.57 Aligned_cols=141 Identities=28% Similarity=0.438 Sum_probs=117.9
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...++|+++|++++|||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+..++..++..+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 4568999999999999999999999887766666665433 345567888889999999999999988999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
+|||++++.+++.+..|+..+..... .+.|+++++||+|+.+ ..+..+++++++..+++.++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~ 148 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ--REVDTREAQAVAQEWKCAFM 148 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS--CSSCHHHHHHHHHHHTCEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc--cccCHHHHHHHHHHhCCeEE
Confidence 99999999999999988888766543 3789999999999963 45667888888888876554
No 78
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.95 E-value=4.2e-27 Score=161.40 Aligned_cols=127 Identities=17% Similarity=0.363 Sum_probs=98.7
Q ss_pred CCCCCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchh
Q 031411 5 PARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 83 (160)
Q Consensus 5 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 83 (160)
++....+.....||+|+|++++|||||+++|.++.+.. .+.++.+.. ...+...+ +.+.+||+||++.+..++..
T Consensus 7 ~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~ 82 (199)
T 4bas_A 7 HHHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN--VETFEKGR--VAFTVFDMGGAKKFRGLWET 82 (199)
T ss_dssp ---------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE--EEEEEETT--EEEEEEEECCSGGGGGGGGG
T ss_pred ccccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee--EEEEEeCC--EEEEEEECCCCHhHHHHHHH
Confidence 33445777788999999999999999999999998877 667777633 33444444 78999999999999999999
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC--------CCCcEEEEEeCCCCCCC
Q 031411 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS--------DNVNKILVGNKADMDES 135 (160)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--------~~~pi~vv~~K~Dl~~~ 135 (160)
+++++|++++|||++++++|+.+..|+..+..... .+.|+++++||+|+.+.
T Consensus 83 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 83 YYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred HHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 99999999999999999999999999988865421 27899999999999744
No 79
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.95 E-value=3e-26 Score=157.64 Aligned_cols=144 Identities=47% Similarity=0.842 Sum_probs=123.9
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
+..++|+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 56799999999999999999999998887777777777777788889998899999999999999988999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+|||..+..+++.+..|+..+......+.|+++++||+|+. ....+..+++++++.+.++.++.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~-~~~~~~~~~a~~l~~~~~~~~~d 146 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEKNNLSFIE 146 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc-cccCcCHHHHHHHHHHcCCeEEE
Confidence 99999999999999999988876655578999999999997 44566778899999888876653
No 80
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.95 E-value=1.1e-27 Score=163.92 Aligned_cols=142 Identities=20% Similarity=0.289 Sum_probs=111.6
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCcc-----------ccceeeeEEEEEE-EECCEEEEEEEecCCCcccc
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF-----------ITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQERF 77 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~D~~g~~~~ 77 (160)
...+..+||+++|++|+|||||++.+.+. +...+ .++.+.++....+ ..++..+.+.+||+||++.+
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 45567899999999999999999766653 33332 2344444433333 45667789999999999999
Q ss_pred cccchhhccCCcEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhc
Q 031411 78 RTITTAYYRGAMGILLVYDVT------DESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTV 151 (160)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~ 151 (160)
..++..+++++|++++|||++ +.++++.+..|+..+.. ...+.|+++++||+|+.+ .+..+++++++.++
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD---ALPVEMVRAVVDPE 163 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT---CCCHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc---ccCHHHHHHHHHhc
Confidence 999999999999999999999 56778888888888743 335889999999999973 37888999999988
Q ss_pred ce-EEE
Q 031411 152 QV-HLV 156 (160)
Q Consensus 152 ~~-~~~ 156 (160)
++ .++
T Consensus 164 ~~~~~~ 169 (198)
T 3t1o_A 164 GKFPVL 169 (198)
T ss_dssp CCSCEE
T ss_pred CCceEE
Confidence 87 444
No 81
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.95 E-value=4.7e-28 Score=163.88 Aligned_cols=142 Identities=29% Similarity=0.609 Sum_probs=104.3
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 4468999999999999999999999887766666655332 223445666678889999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcc---------CCChhHHHHHhhhcce-EEE
Q 031411 93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESKR---------EAPFCLHETILLTVQV-HLV 156 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~---------~~~~~~~~~~~~~~~~-~~~ 156 (160)
+|||++++.+++.+. .|+..+....+ +.|+++++||+|+.+... .+..+++++++..+++ .++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 158 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYI 158 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEE
Confidence 999999999999997 69998887765 889999999999864322 2577888999988875 443
No 82
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.95 E-value=2.7e-27 Score=163.59 Aligned_cols=140 Identities=29% Similarity=0.561 Sum_probs=116.5
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
....+||+++|.+|+|||||++++.++.+...+.++.+ +.....+..++..+.+.+||+||++.+..++..+++++|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 34569999999999999999999999888766666664 44456667788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------cCCChhHHHHHhhhcce
Q 031411 92 LLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------REAPFCLHETILLTVQV 153 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~~ 153 (160)
++|||++++.+++.+. .|+..+.... .+.|+++++||+|+.+.. ..+..+++.+++..+++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 178 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 178 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCC
Confidence 9999999999999997 7998888776 488999999999986432 23778889999998875
No 83
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.95 E-value=4e-26 Score=156.24 Aligned_cols=148 Identities=46% Similarity=0.830 Sum_probs=128.5
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
....+..++++++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++++..++..++..+
T Consensus 23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~ 102 (191)
T 1oix_A 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA 102 (191)
T ss_dssp -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence 34567789999999999999999999999988877888888888888889999888899999999999988899999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
+++++|+|..+..+++.+..|+..+......+.|+++++||+|+. ....+..+++++++.+.++.++.
T Consensus 103 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~-~~~~~~~~~a~~l~~~~~~~~ld 170 (191)
T 1oix_A 103 VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEKNGLSFIE 170 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEE
Confidence 999999999999999999999988876655578999999999996 44566778899999988876653
No 84
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.95 E-value=3e-26 Score=156.32 Aligned_cols=122 Identities=25% Similarity=0.504 Sum_probs=101.8
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCC
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 88 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 88 (160)
.......+||+|+|++++|||||+++|.++.+...+.++.+.++. .+...+ +.+.+||+||++++..++..++.++
T Consensus 16 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (188)
T 1zd9_A 16 PRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGV 91 (188)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTC
T ss_pred ccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHccC
Confidence 344556799999999999999999999998887667777765543 344444 7899999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCC
Q 031411 89 MGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDE 134 (160)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~ 134 (160)
|++++|||++++++++.+..|+..+.... ..+.|+++++||+|+.+
T Consensus 92 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 92 SAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence 99999999999999999999998886542 25789999999999974
No 85
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.94 E-value=2.4e-26 Score=155.85 Aligned_cols=123 Identities=24% Similarity=0.394 Sum_probs=98.2
Q ss_pred CCCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhcc
Q 031411 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 86 (160)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 86 (160)
.........+||+++|.+++|||||+++|.++.+ ..+.++.+... ..+..++ ..+.+||+||++++..++..+++
T Consensus 13 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~ 87 (181)
T 2h17_A 13 GLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYT 87 (181)
T ss_dssp --------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGT
T ss_pred CccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhc
Confidence 3345566779999999999999999999999887 44455555333 4455566 78999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCC
Q 031411 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDE 134 (160)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~ 134 (160)
++|++++|||++++.+++.+..|+..+.... ..+.|+++++||+|+.+
T Consensus 88 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 88 NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp TCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 9999999999999999999999998886643 35789999999999964
No 86
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.94 E-value=5e-27 Score=161.19 Aligned_cols=149 Identities=17% Similarity=0.191 Sum_probs=104.3
Q ss_pred CCCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEE-CCEEEEEEEecCCCcccccccc---h
Q 031411 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTIT---T 82 (160)
Q Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~---~ 82 (160)
....+.+..+||+++|+++||||||++++.+... .................. ++..+.+.+||++|++++.... .
T Consensus 12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 90 (196)
T 3llu_A 12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE 90 (196)
T ss_dssp --------CCEEEEEESTTSSHHHHHHHHHSCCC-GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred CCCcccCcceEEEEECCCCCCHHHHHHHHHhcCC-CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence 3456667789999999999999999998887433 222222222222222233 2455789999999999987766 7
Q ss_pred hhccCCcEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------ccCCChhHHHHHhh----h
Q 031411 83 AYYRGAMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES------KREAPFCLHETILL----T 150 (160)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~------~~~~~~~~~~~~~~----~ 150 (160)
.+++++|++++|||++++ ++++.+..|+..+..... +.|+++++||+|+.+. .+.+..+++++++. .
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP-DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT-TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC-CCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 899999999999999997 777888888888755444 8999999999998632 34556666788887 6
Q ss_pred cceEEEE
Q 031411 151 VQVHLVI 157 (160)
Q Consensus 151 ~~~~~~~ 157 (160)
+++.++.
T Consensus 170 ~~~~~~e 176 (196)
T 3llu_A 170 LHLSFYL 176 (196)
T ss_dssp SCEEEEE
T ss_pred CCcceEE
Confidence 6666543
No 87
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.94 E-value=1.5e-25 Score=153.51 Aligned_cols=142 Identities=24% Similarity=0.367 Sum_probs=110.7
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccc-ccccchhhccCCc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAM 89 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~ 89 (160)
...+||+++|++|+|||||++++.+. .+...+ ++.+.++....+..++..+.+.+||++|... +..++..+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 34689999999999999999999853 233332 3345556667778899888999999999765 4556777888899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 90 GILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
++++|||++++++|+.+..|+..+.... ..+.|+++++||+|+. ..+.+..++++.++..+++.++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~-~~r~v~~~~~~~~a~~~~~~~~ 149 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RXREVSVSEGRAXAVVFDXKFI 149 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh-ccccccHHHHHHHHHHhCCceE
Confidence 9999999999999999999998887653 3578999999999996 3456777888888888876554
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.94 E-value=1e-25 Score=154.01 Aligned_cols=129 Identities=22% Similarity=0.320 Sum_probs=105.2
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...+||+++|++|+|||||++++.++.+. .+.++.+. ....+..++ +.+.+||+||++.+..++..+++++|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 34579999999999999999999988765 34455443 445667777 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCccCCChhHHHHHhh
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKREAPFCLHETILL 149 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~ 149 (160)
+|||++++++++.+..|+..+.+.. ..+.|+++++||+|+.+ .+..++++++..
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~ 150 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAELRSALG 150 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHHHHHTT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC---CCCHHHHHHHhC
Confidence 9999999999999999999886642 35789999999999974 456667776654
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.94 E-value=4e-26 Score=157.06 Aligned_cols=128 Identities=20% Similarity=0.305 Sum_probs=99.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
..++|+++|++|+|||||++++.++.+. .+.++.+.. ...+..++ +.+.+|||||++.+..++..+++++|++++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 4579999999999999999999987764 344454433 34566677 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCccCCChhHHHHHhh
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKREAPFCLHETILL 149 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~ 149 (160)
|||++++++++.+..|+..+.+. ...+.|+++++||+|+.+ .+..+++++++.
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~ 152 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---AISEERLREMFG 152 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---CCCHHHHHHHHT
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc---cCCHHHHHHHhC
Confidence 99999999999999999988764 235789999999999973 456777777765
No 90
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1.1e-25 Score=153.32 Aligned_cols=117 Identities=25% Similarity=0.446 Sum_probs=95.5
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...++|+++|++++|||||++++.++.+. .+.++.+.. ...+..++ +.+.+||+||++++...+..++.++|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 34689999999999999999999988776 455555533 34455565 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCC
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDE 134 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~ 134 (160)
+|||++++++++.+..|+..+.... ..+.|+++++||+|+.+
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 9999999999999999999887653 24789999999999973
No 91
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.94 E-value=3.8e-25 Score=148.08 Aligned_cols=118 Identities=25% Similarity=0.494 Sum_probs=98.5
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
+..+||+++|++|+|||||++++.++.+.. +.++.+ .....+..++ ..+.+||+||++.+...+..+++++|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 345899999999999999999999887653 445554 3445556665 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCC
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDES 135 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~ 135 (160)
+|||++++.+++.+..|+..+.... ..+.|+++++||+|+.+.
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 9999999999999999988876543 257899999999999743
No 92
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.93 E-value=6.9e-25 Score=149.02 Aligned_cols=117 Identities=26% Similarity=0.536 Sum_probs=99.2
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
+..+||+++|++|+|||||++++.++. ...+.++.+ .....+..++ ..+.+||+||++++...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 456999999999999999999999887 555666665 3344556665 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCC
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDE 134 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~ 134 (160)
+|||++++.+++.+..|+..+... ...+.|+++++||+|+.+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 999999999999999999888664 235789999999999974
No 93
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.93 E-value=1.5e-26 Score=157.41 Aligned_cols=138 Identities=27% Similarity=0.472 Sum_probs=100.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeeeEEEEEEEE---CCEEEEEEEecCCCcccccccchhhccCCc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQERFRTITTAYYRGAM 89 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 89 (160)
.+||+++|++|||||||++++.+. .+...+.++.+.++....+.. ++..+.+.+||++|++++..++..++.+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999984 444555667766665544433 234578999999999999888899999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCC---hhHHHHHhhhcceE
Q 031411 90 GILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAP---FCLHETILLTVQVH 154 (160)
Q Consensus 90 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~---~~~~~~~~~~~~~~ 154 (160)
++++|||++++ .+++.+..|+..+....+ +.|+++++||+|+.+. ..+. .+.+++++.++++.
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDE-KQRKACMSKITKELLNKRGFP 148 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCH-HHHHHHHHHHHHHTTTCTTSC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccc-hhhHHHHHHHHHHHHHhcCCc
Confidence 99999999987 589999999999877654 7899999999999632 2221 34456777766653
No 94
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.93 E-value=6.2e-26 Score=151.04 Aligned_cols=114 Identities=26% Similarity=0.574 Sum_probs=95.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEE
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 95 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (160)
+||+++|++|+|||||++++.++.+.. +.++.+ .....+..++ +.+.+||+||++.+..++..++.++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877654 345555 3333444444 68999999999999988999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCC
Q 031411 96 DVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDE 134 (160)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~ 134 (160)
|++++++++.+..|+..+... ...+.|+++++||+|+.+
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 999999999999999888653 234789999999999964
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.93 E-value=1.5e-25 Score=153.52 Aligned_cols=117 Identities=26% Similarity=0.541 Sum_probs=93.4
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...+||+++|++|+|||||++++.++.+.. +.++.+ +....+..++ +.+.+||+||++.+...+..+++++|+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 456999999999999999999999887653 344444 3444555555 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCC
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDE 134 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~ 134 (160)
+|||++++++++.+..|+..+.... ..+.|+++++||+|+.+
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 9999999999999999998886532 34789999999999964
No 96
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.93 E-value=7.9e-25 Score=160.91 Aligned_cols=141 Identities=27% Similarity=0.541 Sum_probs=120.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
..++|+++|.+|+|||||++++..+.+...+.++.+. .....+..++..+.+.+||+||++.+...+..++.++|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEE-EEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccc-eeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 4589999999999999999999988887676666653 345566778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------ccCCChhHHHHHhhhcce-EEE
Q 031411 94 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES-----------KREAPFCLHETILLTVQV-HLV 156 (160)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~ 156 (160)
|||++++.+++.+. .|+..+..... +.|+++++||+|+.+. ...+..+++++++..+++ .++
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 307 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 307 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEE
Confidence 99999999999987 68888877665 8999999999999643 256788899999998876 443
No 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.93 E-value=2e-25 Score=151.43 Aligned_cols=117 Identities=25% Similarity=0.495 Sum_probs=97.6
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
+..++|+++|++|+|||||++++.+..+. .+.++.+ .....+..++ +.+.+||+||++.+...+..++.++|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45699999999999999999999987643 3445555 3344566665 68999999999999888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCC
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDE 134 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~ 134 (160)
+|||++++++++.+..|+..+... ...+.|+++++||+|+.+
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCccc
Confidence 999999999999999999887553 235789999999999974
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=2.5e-25 Score=150.65 Aligned_cols=117 Identities=25% Similarity=0.486 Sum_probs=94.9
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
+..++|+++|++|+|||||++++.++.+ ..+.++.+. ....+..++ ..+.+||+||++.+...+..++.++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF--NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC--CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4569999999999999999999998776 344555553 334555665 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCC
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDE 134 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~ 134 (160)
+|||++++.+++.+..|+..+.... ..+.|+++++||+|+.+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 9999999999999999998887653 35789999999999974
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.88 E-value=1.3e-27 Score=164.95 Aligned_cols=139 Identities=29% Similarity=0.575 Sum_probs=114.1
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...+||+++|++|+|||||++++.++.+...+.++.+.. ....+..++..+.+.+||+||++++...+..+++++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 456999999999999999999999888766666655433 3445566777788999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc-----------cCCChhHHHHHhhhcce
Q 031411 93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDESK-----------REAPFCLHETILLTVQV 153 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~-----------~~~~~~~~~~~~~~~~~ 153 (160)
+|||++++.+++.+. .|+..+....+ +.|+++++||+|+.+.. ..+..+++++++...++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 178 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 178 (204)
Confidence 999999999999987 78888876555 78999999999996432 25566778888887765
No 100
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.93 E-value=7.6e-25 Score=160.11 Aligned_cols=135 Identities=21% Similarity=0.317 Sum_probs=105.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC---CccccceeeeEEEEEEEECCEEEEEEEecCCCcccc-----cccchhhc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----RTITTAYY 85 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~ 85 (160)
..+||+++|++|+|||||++++.++... ..+.+|.+..+ ..+.+++ .+.+.+||+||++.+ ..++..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~--~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEH--SHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEE--EEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEE--EEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999886322 23444444433 3455544 478999999999888 77888899
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHH---HHhcCCCCcEEEEEeCCCCCCC-ccC----CChhHHHHHhhhcc
Q 031411 86 RGAMGILLVYDVTDESSFNNIRNWIRNI---EQHASDNVNKILVGNKADMDES-KRE----APFCLHETILLTVQ 152 (160)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~---~~~~~~~~pi~vv~~K~Dl~~~-~~~----~~~~~~~~~~~~~~ 152 (160)
+++|++++|||++++.+++.+..|...+ .... .+.|+++++||+|+.+. .+. +..+++++++..++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~-~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g 152 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS-PDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG 152 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhC-CCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999987775554 3333 47999999999999742 233 56688899999886
No 101
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.92 E-value=6.4e-25 Score=149.61 Aligned_cols=118 Identities=23% Similarity=0.462 Sum_probs=98.1
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
+..+||+++|++++|||||++++..+.+.. +.++.+ .....+..++ ..+.+||+||++++...+..+++++|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 457999999999999999999999877653 344544 3334555555 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCC
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDES 135 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~~ 135 (160)
+|||++++++++.+..|+..+.... ..+.|+++++||+|+.+.
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 9999999999999999988886543 357899999999999643
No 102
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.91 E-value=4.7e-25 Score=161.06 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC---ccccceeeeEEEEEEEECCEEEEEEEecCCCcccccc---cchhhccCCcE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---ITTAYYRGAMG 90 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~ 90 (160)
||+++|+.|+|||||++++.++..+. ...+|.+.++.. + + ..+++++|||+||++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654432 245566655432 2 2 237899999999999964 35789999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc------cCCChhHHHHHhhh----cceEEEE
Q 031411 91 ILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK------REAPFCLHETILLT----VQVHLVI 157 (160)
Q Consensus 91 ~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~------~~~~~~~~~~~~~~----~~~~~~~ 157 (160)
+++|||++++ ++++.+.+|+..+....+ ++|+++++||+|+.+.. +++..+++++++.+ +++.|+.
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~-~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e 153 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNP-SINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL 153 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCT-TCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCC-CCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence 9999999987 444445555665555544 89999999999997442 46777888899986 6777664
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.91 E-value=1.8e-24 Score=150.17 Aligned_cols=120 Identities=15% Similarity=0.277 Sum_probs=90.1
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCE-EEEEEEecCCCcccccc-cchhhccCCcE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRT-ITTAYYRGAMG 90 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-~~~~~~~~~~~ 90 (160)
...+||+++|++|+|||||++++.++.+...+.++ +.+.. .+..++. .+.+.+|||||+..+.. ++..+++++|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 45689999999999999999999998877665433 33333 3555543 47899999999998887 78888999999
Q ss_pred EEEEEECCChh-hHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCC
Q 031411 91 ILLVYDVTDES-SFNNIRNWIRNIEQH---ASDNVNKILVGNKADMDES 135 (160)
Q Consensus 91 ~i~v~d~~~~~-~~~~~~~~~~~~~~~---~~~~~pi~vv~~K~Dl~~~ 135 (160)
+++|||+++.. ++....+|+..+... ...+.|+++++||+|+.+.
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 99999999853 465665554444322 2347899999999999743
No 104
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.91 E-value=1e-23 Score=155.51 Aligned_cols=117 Identities=25% Similarity=0.544 Sum_probs=92.3
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 92 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 92 (160)
...+||+|+|.+++|||||+++|.++.+... .++.+.. ...+...+ +.+.+|||||++.+..++..+++.+|+++
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3558999999999999999999998886543 3444433 34455555 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCC
Q 031411 93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDE 134 (160)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~ 134 (160)
+|||++++.+++.+..|+..+.... ..++|+++++||+|+.+
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCc
Confidence 9999999999999998888775533 35889999999999974
No 105
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.91 E-value=1.9e-25 Score=159.36 Aligned_cols=149 Identities=23% Similarity=0.318 Sum_probs=102.2
Q ss_pred CCCCCCCCCeeEEEEEEcCC---------CCCHHHHHHHHhc---CCCCCccccce-eeeEEEE--------------EE
Q 031411 5 PARARADYDYLIKLLLIGDS---------GVGKSCLLLRFSD---GSFTTSFITTI-GIDFKIR--------------TI 57 (160)
Q Consensus 5 ~~~~~~~~~~~~~i~v~G~~---------~~GKstli~~l~~---~~~~~~~~~~~-~~~~~~~--------------~~ 57 (160)
.++.....+..+||+|+|.+ |||||||+++|.+ +.+...+.++. +.++... ..
T Consensus 9 ~~~~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~ 88 (255)
T 3c5h_A 9 SGRENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRS 88 (255)
T ss_dssp --CTTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--
T ss_pred CccCCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeeccccccccccccc
Confidence 33445566778999999999 9999999999998 55555544443 2221111 11
Q ss_pred EECCEEEEEEEec-----------------------CCCcccccccchhhcc---------------------CCcEEEE
Q 031411 58 ELDGKRIKLQIWD-----------------------TAGQERFRTITTAYYR---------------------GAMGILL 93 (160)
Q Consensus 58 ~~~~~~~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~ 93 (160)
..++..+.+.+|| ++|++++..++..++. ++|++++
T Consensus 89 ~~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vil 168 (255)
T 3c5h_A 89 LEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLL 168 (255)
T ss_dssp -------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEE
T ss_pred ccCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEE
Confidence 2456678999999 6667777777777766 7999999
Q ss_pred EEECCCh--hhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhc-ceEEE
Q 031411 94 VYDVTDE--SSFNNIRNWIRNIEQH-ASDNVNKILVGNKADMDESKREAPFCLHETILLTV-QVHLV 156 (160)
Q Consensus 94 v~d~~~~--~~~~~~~~~~~~~~~~-~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (160)
|||++++ .+++.+..|+..+... ...+.|+++++||+|+.+. +. .+++++++.+. ++.++
T Consensus 169 V~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~-~~--v~~~~~~~~~~~~~~~~ 232 (255)
T 3c5h_A 169 GIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE-RY--IRDAHTFALSKKNLQVV 232 (255)
T ss_dssp EEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH-HH--HHHHHHHHHTSSSCCEE
T ss_pred EEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc-HH--HHHHHHHHHhcCCCeEE
Confidence 9999998 9999999999998765 3357899999999999632 22 26778888763 54443
No 106
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.91 E-value=9.2e-24 Score=142.23 Aligned_cols=117 Identities=21% Similarity=0.223 Sum_probs=89.9
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
.+..++|+++|++|+|||||++++.++.+...+.++.+.+.....+..++ ..+.+||+||++.+..++...+..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 34568999999999999999999999887766555555555555667777 4578999999999999998999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
++|||++++...+.. ..+......+.|+++++||+|+.+
T Consensus 83 i~v~d~~~~~~~~~~----~~l~~~~~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 83 ILVVAADDGVMPQTV----EAINHAKAANVPIIVAINKMDKPE 121 (178)
T ss_dssp EEEEETTCCCCHHHH----HHHHHHGGGSCCEEEEEETTTSSC
T ss_pred EEEEECCCCCcHHHH----HHHHHHHhCCCCEEEEEECccCCc
Confidence 999999884222211 112222234789999999999974
No 107
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.90 E-value=4.8e-23 Score=137.68 Aligned_cols=132 Identities=19% Similarity=0.208 Sum_probs=92.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccc------cchhhcc--
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYYR-- 86 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~-- 86 (160)
.++|+++|++|+|||||++++.+..+.....++.+.+.....+..++ ..+.+|||||+..+.. +...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 47999999999999999999998776555445555555555566666 5789999999887652 3345554
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
++|++++++|+++.+ ....|+..+.. .+.|+++++||+|+.+. ..+.. ++++++.++++.++
T Consensus 81 ~~~~~i~v~D~~~~~---~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~ 142 (165)
T 2wji_A 81 KPDLVVNIVDATALE---RNLYLTLQLME---MGANLLLALNKMDLAKS-LGIEI-DVDKLEKILGVKVV 142 (165)
T ss_dssp CCSEEEEEEETTCHH---HHHHHHHHHHH---TTCCEEEEEECHHHHHH-TTCCC-CHHHHHHHHTSCEE
T ss_pred CCCEEEEEecCCchh---HhHHHHHHHHh---cCCCEEEEEEchHhccc-cChhh-HHHHHHHHhCCCEE
Confidence 899999999998754 44557766654 37899999999998532 22222 46777777665443
No 108
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=2e-24 Score=150.30 Aligned_cols=131 Identities=15% Similarity=0.288 Sum_probs=99.1
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCc---cccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccC-
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS---FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG- 87 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~- 87 (160)
....++|+++|++|+|||||+++|.+..+... +.++.+.++ ....+.+||+||++.+...+..++..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 44568999999999999999999998876542 333332221 23578999999999998888888877
Q ss_pred ---CcEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCccCCC------hhHHHHHhhhcc
Q 031411 88 ---AMGILLVYDVT-DESSFNNIRNWIRNIEQH----ASDNVNKILVGNKADMDESKREAP------FCLHETILLTVQ 152 (160)
Q Consensus 88 ---~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~pi~vv~~K~Dl~~~~~~~~------~~~~~~~~~~~~ 152 (160)
+|++++|||++ ++++++.+..|+..+... ...++|+++++||+|+.+.. .+. .+++++++..++
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~ 157 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR-PPSKIKDALESEIQKVIERRK 157 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC-CHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999 889999999999888654 34589999999999997432 222 344556655543
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.90 E-value=1.2e-22 Score=157.11 Aligned_cols=118 Identities=25% Similarity=0.550 Sum_probs=98.5
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 91 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 91 (160)
....+||+++|.+++|||||+++|.++.+.. +.+|.+. ....+...+ +.+.+|||+|++.+..++..+++++|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGF--NVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE--EEEEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccce--eEEEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 3457999999999999999999999887543 4455553 334455555 6899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCC
Q 031411 92 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDE 134 (160)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~Dl~~ 134 (160)
|+|||++++.+|+.+..|+..+.... ..++|+++++||+|+.+
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 99999999999999999998886643 25889999999999974
No 110
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.89 E-value=2.4e-22 Score=140.87 Aligned_cols=137 Identities=21% Similarity=0.166 Sum_probs=91.0
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccc---------cccch
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITT 82 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~ 82 (160)
.+..++|+|+|++|+|||||+++|.+..+.....+..+.+........++ ..+.+|||||+... ...+.
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 103 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTIT 103 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHH
Confidence 35679999999999999999999998876533333333334444444555 67999999998321 01123
Q ss_pred hhccCCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCCh---hHHHHHhhhcc
Q 031411 83 AYYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPF---CLHETILLTVQ 152 (160)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~---~~~~~~~~~~~ 152 (160)
.++..+|++++|||++++.+++ ....|+..+.... .+.|+++++||+|+.+. ..+.. +..++++...+
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~ 176 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNM-DSLSIDNKLLIKQILDNVK 176 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCC
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCc-hhhHHHHHHHHHHHHHhcC
Confidence 4467889999999999987764 3345666655432 27899999999999733 33333 24666776654
No 111
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.89 E-value=2.2e-23 Score=162.58 Aligned_cols=142 Identities=23% Similarity=0.309 Sum_probs=105.5
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEE------E--EECCEEEEEEEecCCCcccccccchh
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRT------I--ELDGKRIKLQIWDTAGQERFRTITTA 83 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~D~~g~~~~~~~~~~ 83 (160)
....+||+++|.+|||||||++++.++.+...+.++.+.++.... + ..++..+.+.+||+||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456799999999999999999999999887777777776665432 1 11233478999999999999999999
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcce--EEEEe
Q 031411 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQV--HLVIL 158 (160)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~ 158 (160)
+++++|++++|||+++. +.+..|+..+....+ +.|+++++||+|+. ....+..+++++++...++ ..+||
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~vSA 189 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDEN-PSYNIEQKKINERFPAIENRFHRISC 189 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTC-TTCCCCHHHHHHHCGGGTTCEEECCC
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcc-cccccCHHHHHHHHHhcCCceEEEec
Confidence 99999999999999765 566778888887765 78999999999997 4456677888888888774 44444
No 112
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.6e-23 Score=139.94 Aligned_cols=115 Identities=17% Similarity=0.301 Sum_probs=88.2
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCc---cccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccC-
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS---FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG- 87 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~- 87 (160)
....++|+++|++|+|||||++++.+..+... ..++.+. +.....+.+||+||+..+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 35668999999999999999999998775431 1222211 1123578999999999888878777766
Q ss_pred ---CcEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCC
Q 031411 88 ---AMGILLVYDVT-DESSFNNIRNWIRNIEQH----ASDNVNKILVGNKADMDES 135 (160)
Q Consensus 88 ---~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~pi~vv~~K~Dl~~~ 135 (160)
+|++++|||++ ++.+++.+..|+..+... ...+.|+++++||+|+.+.
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999999 899999999998888654 3358999999999999743
No 113
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=1.7e-22 Score=137.34 Aligned_cols=133 Identities=19% Similarity=0.206 Sum_probs=98.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccccc------ccchhhcc-
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR- 86 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~- 86 (160)
..++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||+..+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 468999999999999999999998766555555556666666677776 678999999988764 23455554
Q ss_pred -CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 87 -GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 87 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
.++++++++|.++ ++....|+..+.. .+.|+++++||+|+.+. ..+. ++.++++..+++.++
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~ 146 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKS-LGIE-IDVDKLEKILGVKVV 146 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHH-TTCC-CCHHHHHHHHTSCEE
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhcccc-ccch-HHHHHHHHHhCCCeE
Confidence 5999999999864 5666777777654 47899999999998532 2222 456777777665443
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.87 E-value=4.2e-22 Score=131.91 Aligned_cols=114 Identities=21% Similarity=0.207 Sum_probs=77.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccc-------cccchhhccC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------RTITTAYYRG 87 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~ 87 (160)
.||+++|++|+|||||++++.+..+. ....++.+.+.....+..++. .+.+||+||+..+ ...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999987643 233334444555566667773 7889999998763 3345567889
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
+|++++|+|.+++.+.. ..|+..+... .+.|+++++||+|+.+.
T Consensus 80 ~~~~i~v~d~~~~~~~~--~~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQA--DYEVAEYLRR--KGKPVILVATKVDDPKH 123 (161)
T ss_dssp CSEEEEEEESSSCCCHH--HHHHHHHHHH--HTCCEEEEEECCCSGGG
T ss_pred CCEEEEEEECCCcccHh--HHHHHHHHHh--cCCCEEEEEECcccccc
Confidence 99999999998753322 1222222222 36899999999999743
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.87 E-value=3.7e-23 Score=140.60 Aligned_cols=128 Identities=21% Similarity=0.268 Sum_probs=91.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCC-----------cccccccchhh
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTITTAY 84 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~ 84 (160)
+||+++|++|+|||||++++.+..+...+.++.+.... .+... .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999998877666665553332 33333 588999999 56666666667
Q ss_pred ccC-CcEEEEEEECCChhhHHHH-HHHHHH--------H-HHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcce
Q 031411 85 YRG-AMGILLVYDVTDESSFNNI-RNWIRN--------I-EQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQV 153 (160)
Q Consensus 85 ~~~-~~~~i~v~d~~~~~~~~~~-~~~~~~--------~-~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (160)
++. +++++++|+..+..+++.+ ..|... + ......+.|+++++||+|+.+.. .+++++++.++++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV----QEVINFLAEKFEV 151 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH----HHHHHHHHHHHTC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH----HHHHHHHHHHhhh
Confidence 766 7766666666666777776 556542 2 22223478999999999997433 5567778877765
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.87 E-value=8.8e-22 Score=140.62 Aligned_cols=135 Identities=16% Similarity=0.151 Sum_probs=98.7
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccc------hhhc-
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT------TAYY- 85 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~------~~~~- 85 (160)
...++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+||+||+..+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4568999999999999999999998776555555566555555666655 689999999988776532 4444
Q ss_pred -cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEEE
Q 031411 86 -RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLVI 157 (160)
Q Consensus 86 -~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (160)
..+|++++|+|+++.++. ..|..++.. .+.|+++++||+|+.+. ..+. .+.++++..+++.++.
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~-~~i~-~~~~~l~~~lg~~vi~ 145 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKK-TGMK-IDRYELQKHLGIPVVF 145 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHH-TTCC-BCHHHHHHHHCSCEEE
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCc-cchH-HHHHHHHHHcCCCEEE
Confidence 589999999999886543 335555543 37899999999998532 2222 2477788887766543
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.87 E-value=2.1e-21 Score=141.98 Aligned_cols=137 Identities=19% Similarity=0.089 Sum_probs=99.1
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEEEC-CEEEEEEEecCCCccccc---------
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFR--------- 78 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~--------- 78 (160)
.+.+..-.|+++|.+|+|||||+|+|.+..+.. ...+..+..........+ + .++.+|||||+....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHH
Confidence 344566899999999999999999999877642 223333333333444555 4 689999999986544
Q ss_pred -ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcc
Q 031411 79 -TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQ 152 (160)
Q Consensus 79 -~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~ 152 (160)
.....++.++|++++|+|++++.+.+....|+..+.. .+.|+++++||+|+.+ ......+..+++...++
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~-~~~~~~~~~~~l~~~~~ 153 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIG-PAKNVLPLIDEIHKKHP 153 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSS-SGGGGHHHHHHHHHHCT
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCC-CHHHHHHHHHHHHHhcc
Confidence 4456678899999999999998888887777777765 3689999999999962 33344555666666553
No 118
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.87 E-value=7.4e-22 Score=132.88 Aligned_cols=116 Identities=23% Similarity=0.237 Sum_probs=88.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccc--------hhhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAYY 85 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 85 (160)
..+|+++|++|+|||||+++|.+.... ....++.+.++....+..++. .+.+|||||+..+.... ..++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 479999999999999999999986542 222334445566667777773 58899999986532211 1357
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+++|++++|||++++.+++ ...|+..+......++|+++++||+|+.
T Consensus 82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp HTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 8999999999999988776 3578877777665679999999999985
No 119
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.86 E-value=3.6e-22 Score=136.38 Aligned_cols=116 Identities=17% Similarity=0.246 Sum_probs=77.9
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCC----------cccccccc
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTIT 81 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~ 81 (160)
....++|+++|++|+|||||+++|.+..+.....++.+..........++ .+.+||+|| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 44679999999999999999999998875444444443333333334444 589999999 66677667
Q ss_pred hhhccCC---cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 82 TAYYRGA---MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 82 ~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
..++..+ |++++|+|++++.++.... ++..+.. .+.|+++++||+|+.+
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIP 148 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSC
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCC
Confidence 7777666 9999999999876665532 1222222 4789999999999963
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.86 E-value=4.5e-22 Score=142.00 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=96.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccc----------cchhhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------ITTAYY 85 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~ 85 (160)
.+|+++|++|+|||||+|+|.+........++.+.+.....+..++. .+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999998766666667777777777787774 789999999876653 445566
Q ss_pred --cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 86 --RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 86 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
.++|++++|+|+++.++...+..|+. ..+.|+++++||+|+.+.. ... ....+++...++.++
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~-~~~-~~~~~l~~~lg~~vi 144 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEHR-GIS-IDTEKLESLLGCSVI 144 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHHT-TCE-ECHHHHHHHHCSCEE
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCcC-CcH-HHHHHHHHHcCCCEE
Confidence 88999999999988665554443332 2378999999999985322 111 234556666666544
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.86 E-value=9.6e-22 Score=141.57 Aligned_cols=132 Identities=14% Similarity=0.166 Sum_probs=94.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccccccc----------chhh
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------TTAY 84 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~~ 84 (160)
+++|+++|.+|+|||||+|+|.+..+.....++.+.+.....+..++ ..+.+|||||+..+... +..+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 58999999999999999999999876655666666666666677666 46789999998776521 2223
Q ss_pred c--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 85 Y--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 85 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
+ ..+|++++|+|+++.++...+..++... ++|+++++||+|+.+... . .....+++..+++.++
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~-~-~~~~~~l~~~lg~~~i 146 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQLLEL------GIPCIVALNMLDIAEKQN-I-RIEIDALSARLGCPVI 146 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH------TCCEEEEEECHHHHHHTT-E-EECHHHHHHHHTSCEE
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHHHHhc------CCCEEEEEECccchhhhh-H-HHHHHHHHHhcCCCEE
Confidence 2 6899999999998865554444444332 789999999999853221 1 2235666666665544
No 122
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.86 E-value=4.4e-22 Score=135.69 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=92.5
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCC----------cccccc
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRT 79 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~ 79 (160)
.+.+..+||+++|++|+|||||+++|.+.... ...++.+..........+. .+.+||+|| +..+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence 34456789999999999999999999987633 2233333222223333343 578999999 556666
Q ss_pred cchhhccCC---cEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-ccCCChhHHHHHhhhc--
Q 031411 80 ITTAYYRGA---MGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKILVGNKADMDES-KREAPFCLHETILLTV-- 151 (160)
Q Consensus 80 ~~~~~~~~~---~~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~-~~~~~~~~~~~~~~~~-- 151 (160)
++..++..+ |++++|+|+++..+ ...+..|+... +.|+++++||+|+.+. ......+++++++...
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE 167 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence 666666655 99999999887533 33444454433 6899999999999633 3345556677777663
Q ss_pred -ceEEEEe
Q 031411 152 -QVHLVIL 158 (160)
Q Consensus 152 -~~~~~~~ 158 (160)
.+..+||
T Consensus 168 ~~~~~~Sa 175 (195)
T 3pqc_A 168 YTIIPTSS 175 (195)
T ss_dssp SCEEECCT
T ss_pred CceEEEec
Confidence 3444444
No 123
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.84 E-value=1.8e-20 Score=133.07 Aligned_cols=146 Identities=14% Similarity=0.085 Sum_probs=87.3
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccc--eeeeEEEEEEEECCEEEEEEEecCCCc--------cccc
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITT--IGIDFKIRTIELDGKRIKLQIWDTAGQ--------ERFR 78 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~ 78 (160)
.......++|+|+|.+|+|||||+|+|++.......... .+.......+..++ ..+.+|||||. +.+.
T Consensus 15 ~~~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ 92 (247)
T 3lxw_A 15 YFQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGC 92 (247)
T ss_dssp -----CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTS
T ss_pred cccCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHH
Confidence 344456799999999999999999999987765432222 33334445556666 57899999995 2222
Q ss_pred ccchhhc----cCCcEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccC-----CChhHHHHHh
Q 031411 79 TITTAYY----RGAMGILLVYDVTDESSF-NNIRNWIRNIEQHASDNVNKILVGNKADMDESKRE-----APFCLHETIL 148 (160)
Q Consensus 79 ~~~~~~~----~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~-----~~~~~~~~~~ 148 (160)
......+ .++|++++|+|+++.... ..+.+|+..+......+.|+++++||.|+.+...+ ...++.+++.
T Consensus 93 ~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 93 EERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHH
Confidence 2222233 899999999999753221 22233443332211126799999999999643211 1113467777
Q ss_pred hhcceEEE
Q 031411 149 LTVQVHLV 156 (160)
Q Consensus 149 ~~~~~~~~ 156 (160)
.+++..++
T Consensus 173 ~~~g~~~~ 180 (247)
T 3lxw_A 173 AECGGRVC 180 (247)
T ss_dssp HHTTTCEE
T ss_pred HHcCCeEE
Confidence 77665444
No 124
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.84 E-value=1.8e-21 Score=139.87 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=91.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccccc------ccchhhcc-
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR- 86 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~- 86 (160)
..++|+++|++|+|||||+++|.+........++.+.+.. ...++. ...+.+|||||+..+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~--~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERK--SGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCE--EEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEE--EEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 3579999999999999999999987644444444444333 223343 4579999999998775 34455554
Q ss_pred -CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 87 -GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 87 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
++|++++|+|+++.++ ...|..++.. .+.|+++++||+|+.+. ..+. .+.++++..+++.++
T Consensus 79 ~~~d~vi~V~D~t~~e~---~~~~~~~l~~---~~~p~ilv~NK~Dl~~~-~~~~-~~~~~l~~~lg~~vi 141 (272)
T 3b1v_A 79 QRADSILNVVDATNLER---NLYLTTQLIE---TGIPVTIALNMIDVLDG-QGKK-INVDKLSYHLGVPVV 141 (272)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHH---TCSCEEEEEECHHHHHH-TTCC-CCHHHHHHHHTSCEE
T ss_pred CCCCEEEEEecCCchHh---HHHHHHHHHh---cCCCEEEEEEChhhCCc-CCcH-HHHHHHHHHcCCCEE
Confidence 6999999999987544 3445555544 37899999999998532 2222 456778777776554
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.84 E-value=1.1e-20 Score=135.71 Aligned_cols=133 Identities=20% Similarity=0.167 Sum_probs=96.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccc------cchhhc--c
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--R 86 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~ 86 (160)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++. .+.+||+||+..+.. +...++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 479999999999999999999988776556666777777777777774 589999999887665 445555 6
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceEEE
Q 031411 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVHLV 156 (160)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (160)
++|++++|+|+++.+ ....|...+... ...|+++++||+|+.+.. .... +..+++..+++.++
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~-~~~~-~~~~l~~~lg~~~~ 143 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKK-GAKI-DIKKMRKELGVPVI 143 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHH-TCCC-CHHHHHHHHSSCEE
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCccc-ccHH-HHHHHHHHcCCcEE
Confidence 899999999998753 333444444432 138999999999985322 2222 26667777766554
No 126
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=132.47 Aligned_cols=141 Identities=15% Similarity=0.065 Sum_probs=88.3
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCcccc--ceeeeEEEEEEEECCEEEEEEEecCCCcc-----------ccc
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT--TIGIDFKIRTIELDGKRIKLQIWDTAGQE-----------RFR 78 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----------~~~ 78 (160)
.+..++|+|+|.+|+|||||+++|++..+.....+ +.+.......+..++ ..+.+|||||.. .+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 34569999999999999999999999877654443 444455555666777 478999999932 333
Q ss_pred ccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCccC-----CChhHHHHHhhhc
Q 031411 79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKRE-----APFCLHETILLTV 151 (160)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~pi~vv~~K~Dl~~~~~~-----~~~~~~~~~~~~~ 151 (160)
.......+++|++++|+|+++.... ...|+..+..... ...|+++++||+|+.+.... ...+..+++..++
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 3344456788999999998764331 1233333322111 13599999999998533211 1124577777777
Q ss_pred ceEEE
Q 031411 152 QVHLV 156 (160)
Q Consensus 152 ~~~~~ 156 (160)
+..++
T Consensus 182 ~~~~~ 186 (239)
T 3lxx_A 182 GDRYC 186 (239)
T ss_dssp SSSEE
T ss_pred CCEEE
Confidence 65544
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.84 E-value=3.1e-20 Score=135.25 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=81.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEEECCEEEEEEEecCCCccc--------ccccchhh
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAY 84 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~ 84 (160)
+..+|+++|.+|+|||||+|+|.+..+.. +..+.++.+.....+..++ .++.+|||||... +......+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 45689999999999999999999877642 2222222222222333444 6899999999765 33445567
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 85 YRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
++++|++++|+|++++.+.. ..|+ ..+.... .+.|+++++||+|+.+
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAK 131 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCS
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCC
Confidence 89999999999998764433 3454 3444433 3789999999999963
No 128
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.83 E-value=3.1e-20 Score=141.59 Aligned_cols=123 Identities=16% Similarity=0.074 Sum_probs=85.4
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCccccceeeeEEEEEE
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSDGS-------------------------------FTTSFITTIGIDFKIRTI 57 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 57 (160)
..+....++|+++|.+++|||||+++|+... ...+..+..+++.....+
T Consensus 11 ~~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~ 90 (439)
T 3j2k_7 11 GAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYF 90 (439)
T ss_pred CCCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEE
Confidence 3455677999999999999999999995421 111222344555554455
Q ss_pred EECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhh---HHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 031411 58 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FNNIRNWIRNIEQHASDNVN-KILVGNKADMD 133 (160)
Q Consensus 58 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~p-i~vv~~K~Dl~ 133 (160)
..++ ..+.+||||||++|...+...+..+|++++|+|+++... |+...++...+......++| +++++||+|+.
T Consensus 91 ~~~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 91 ETEK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 168 (439)
T ss_pred ecCC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCc
Confidence 5555 589999999999998888888999999999999987532 22111222222222223566 99999999995
No 129
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.83 E-value=1.5e-19 Score=129.30 Aligned_cols=117 Identities=18% Similarity=0.218 Sum_probs=84.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhcc------
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR------ 86 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~------ 86 (160)
..++|+++|.+|+|||||+++|.+.... ....+..+.......+..++ ..+.+|||||+..+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 5699999999999999999999987642 22223333344445566666 47999999999877665544443
Q ss_pred ---CCcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCC--CcEEEEEeCCCCC
Q 031411 87 ---GAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDN--VNKILVGNKADMD 133 (160)
Q Consensus 87 ---~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~--~pi~vv~~K~Dl~ 133 (160)
++|++++|++++... +.. -..|+..+......+ .|+++++||+|+.
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 789999999987644 333 346777776654433 3999999999995
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.82 E-value=5.5e-20 Score=141.19 Aligned_cols=117 Identities=19% Similarity=0.133 Sum_probs=69.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccc--------hhhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAYY 85 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 85 (160)
.++|+++|.+|+|||||+|+|.+... .....++++.+.....+..++ ..+.+|||||+..+...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 47899999999999999999998753 234445555566666677777 579999999987655433 3367
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
..+|++++|+|++++.+++.+..+...+. ... +.|+++|+||+|+.+.
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~-~l~-~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKA-AHP-AAKFLTVANKLDRAAN 358 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHH-HCT-TSEEEEEEECTTSCTT
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHH-hcC-CCCEEEEEECcCCCCc
Confidence 89999999999999877754333322222 222 7899999999999733
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=3.2e-20 Score=141.48 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=83.3
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcc----------cccccc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTIT 81 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~ 81 (160)
+..+||+++|.+|+|||||+|+|.+..+. ....++.+.+.....+..++. .+.+|||||+. .+..+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 45699999999999999999999987653 333444455555556677774 58999999973 333322
Q ss_pred h-hhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 82 T-AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 82 ~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
. .+++.+|++++|+|++++.+++.. +|+..+.. .+.|+++++||+|+.+
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVD 300 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSC
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCC
Confidence 2 467889999999999998777665 46666543 3789999999999973
No 132
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.81 E-value=1.2e-20 Score=131.55 Aligned_cols=117 Identities=14% Similarity=0.113 Sum_probs=77.0
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCC--CCccccceeeeEEEEEEEEC-CEEEEEEEecCCCc----------cccc
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF--TTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQ----------ERFR 78 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~----------~~~~ 78 (160)
....++|+|+|.+|+|||||+++|.+... .....+..+.... ..... .....+.+|||||. +.+.
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN--YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE--EEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE--EEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 34568999999999999999999998763 2222222222222 22232 22357899999994 3334
Q ss_pred ccchhhccC---CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 79 TITTAYYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 79 ~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.+...++.. +|++++|+|+++..+ +....|+..+.. .+.|+++|+||+|+.+
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAP---TGKPIHSLLTKCDKLT 158 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGG---GCCCEEEEEECGGGSC
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHh---cCCCEEEEEeccccCC
Confidence 445555554 788999999987533 222334444443 4689999999999963
No 133
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.80 E-value=1.8e-19 Score=138.82 Aligned_cols=135 Identities=17% Similarity=0.158 Sum_probs=89.0
Q ss_pred CCCCCCeeEEEEEEcCCCCCHHHHHHHHhcCC-------CCCccccceeeeEEEEEEEECCEEEEEEEecCCCccccccc
Q 031411 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80 (160)
Q Consensus 8 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 80 (160)
+.......++|+++|..++|||||+++|.+.. +..+..+..+.+.....+..++ ..+.+||+||++.+...
T Consensus 12 ~~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~ 89 (482)
T 1wb1_A 12 RPHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRA 89 (482)
T ss_dssp -CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHH
T ss_pred chhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHH
Confidence 34444567999999999999999999999766 2333333344433334455566 67999999999998888
Q ss_pred chhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-cCCChhHHHHHhhhc
Q 031411 81 TTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK-REAPFCLHETILLTV 151 (160)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~-~~~~~~~~~~~~~~~ 151 (160)
....+..+|++++|+|+++ +.+.+.+. .+.. .++|+++++||+|+.+.. .+...++++++....
T Consensus 90 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~ 157 (482)
T 1wb1_A 90 VVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQST 157 (482)
T ss_dssp HHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhh
Confidence 8888999999999999987 44444432 2222 267889999999997422 122334455555443
No 134
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=1.1e-19 Score=139.32 Aligned_cols=133 Identities=20% Similarity=0.184 Sum_probs=90.7
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeEEEEEEEECCEEEEEEEecCCC----------ccccccc
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTI 80 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~ 80 (160)
.+..++|+++|.+++|||||++++.+... .....++.+.+.....+..++. .+.+||||| ++++...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 45578999999999999999999997642 2333444444444456666774 789999999 5555554
Q ss_pred ch-hhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhc
Q 031411 81 TT-AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTV 151 (160)
Q Consensus 81 ~~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~ 151 (160)
.. .+++.+|++++|+|+++... +....|+..+.. .+.|+++++||+|+. .......++.++.+.+.
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~-~~~~~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAV-DKDESTMKEFEENIRDH 336 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGS-CCCSSHHHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcC-CCchHHHHHHHHHHHHh
Confidence 44 36789999999999987433 233345544443 478999999999997 33455566666666543
No 135
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.80 E-value=2.3e-20 Score=137.98 Aligned_cols=130 Identities=19% Similarity=0.181 Sum_probs=92.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcc----cccccchhhcc---CC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----RFRTITTAYYR---GA 88 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~---~~ 88 (160)
.+|+|+|.+++|||||+++|++........+..+.......+..++. ..+.+||+||.. .+..+...+++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 36889999999999999999986543222222333344444555542 378999999953 33344445544 59
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhc
Q 031411 89 MGILLVYDVTD---ESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKREAPFCLHETILLTV 151 (160)
Q Consensus 89 ~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~--~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~ 151 (160)
+++++|+|+++ +++++.+..|+.++..+.+ .+.|+++++||+|+.+.. ++.++++..+
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~-----e~~~~l~~~l 300 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA-----ENLEAFKEKL 300 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH-----HHHHHHHHHC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH-----HHHHHHHHHh
Confidence 99999999998 7889999999999987653 478999999999996321 3345555544
No 136
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.80 E-value=7.4e-20 Score=138.51 Aligned_cols=134 Identities=18% Similarity=0.171 Sum_probs=90.3
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCccccccc-------ch
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TT 82 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~ 82 (160)
+....++|+++|..++|||||+++|.+..+. ....+..+.+.....+...+. ..+.+|||||+..+... ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence 3456799999999999999999999987753 333444445556666666653 27899999999876554 24
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcceE
Q 031411 83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQVH 154 (160)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~~ 154 (160)
.++..+|++++|+|+.... ....|+..+... ++|+++|+||+|+.+.... +..++++..+++.
T Consensus 109 ~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~---~~~~~l~~~~g~~ 171 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE---ELKGLYESRYEAK 171 (423)
T ss_dssp HHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT---HHHHHSSCCTTCC
T ss_pred HHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH---HHHHHHHHHcCCC
Confidence 4788999999999994333 335566666554 7899999999999743332 5667777666553
No 137
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.80 E-value=1.8e-19 Score=138.51 Aligned_cols=133 Identities=24% Similarity=0.223 Sum_probs=95.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeEEEEEEEECCEEEEEEEecCCCcc-cccc--------cchhhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-RFRT--------ITTAYY 85 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~~--------~~~~~~ 85 (160)
++|+++|.+|+|||||+|+|.+... .....++++.+.....+..++ ..+.+|||||.. .+.. ....++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 8999999999999999999998653 233344555566666777777 578999999987 5432 124567
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhh-cceEEEEee
Q 031411 86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLT-VQVHLVILK 159 (160)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~k 159 (160)
+.+|++++|+|++++.+++... ++..+ .+.|+++++||+|+.+. +..+++++++.. ..+..+|||
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~---~~~~~~~~~~~~~~~~i~iSAk 387 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK---INEEEIKNKLGTDRHMVKISAL 387 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC---CCHHHHHHHHTCSTTEEEEEGG
T ss_pred hcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc---cCHHHHHHHhcCCCcEEEEECC
Confidence 8999999999999887766532 22222 27899999999999632 344555555432 356677765
No 138
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.79 E-value=4e-20 Score=140.93 Aligned_cols=137 Identities=17% Similarity=0.157 Sum_probs=90.9
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcC--CCCCc-----------------------------cccceeeeEEEEEEEECC
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDG--SFTTS-----------------------------FITTIGIDFKIRTIELDG 61 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 61 (160)
...++|+++|..++|||||+++|+.. .+... ..+..+++.....+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 35689999999999999999999864 22211 012223333323333333
Q ss_pred EEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhc----CCCC-cEEEEEeCCCCCCCc
Q 031411 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNV-NKILVGNKADMDESK 136 (160)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~-pi~vv~~K~Dl~~~~ 136 (160)
..+.+|||||+.+|...+...+..+|++++|+|+++ .+|+.+..|..+...+. ..++ |+++++||+|+.+..
T Consensus 84 --~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 84 --YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp --CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred --eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 579999999999998888889999999999999998 77876655444433221 1243 689999999997421
Q ss_pred c-----CCChhHHHHHhhhcc
Q 031411 137 R-----EAPFCLHETILLTVQ 152 (160)
Q Consensus 137 ~-----~~~~~~~~~~~~~~~ 152 (160)
. +...+++++++..++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~ 181 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYG 181 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHcC
Confidence 1 223456777776654
No 139
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.79 E-value=2.2e-18 Score=128.26 Aligned_cols=140 Identities=15% Similarity=0.126 Sum_probs=97.0
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccc---------cchh
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---------ITTA 83 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~ 83 (160)
...++++++|.+|+|||||+++|.+........+..+.......+...+ ..+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4567999999999999999999998764332223333334444444454 5789999999754221 1122
Q ss_pred hccCCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcc--eEEEEe
Q 031411 84 YYRGAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQ--VHLVIL 158 (160)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (160)
....+|++++|+|++++. +++....|+..+..... +.|+++++||+|+.+.. ..+++.+++...+ +.++||
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA 317 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEE---NIKRLEKFVKEKGLNPIKISA 317 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHH---HHHHHHHHHHHTTCCCEECBT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChH---HHHHHHHHHHhcCCCeEEEeC
Confidence 345699999999998876 67888889988877655 78999999999996322 2345666665544 344444
No 140
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.79 E-value=2e-18 Score=123.11 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=77.0
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCC-CCCccccc-eeeeEEEEEEEECCEEEEEEEecCCCcccccccc--------
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS-FTTSFITT-IGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-------- 81 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------- 81 (160)
....++|+|+|.+|+|||||+++|.+.. +.....++ .+.......+..++ ..+.+|||||+..+....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 4456899999999999999999999876 33333333 34444545556666 578999999976553322
Q ss_pred ---hhhccCCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEe-CCCCC
Q 031411 82 ---TAYYRGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKILVGN-KADMD 133 (160)
Q Consensus 82 ---~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~pi~vv~~-K~Dl~ 133 (160)
...++.+|++++|+|+++... ...+..|+..+..... ..|.++++| |+|+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~vv~nK~Dl~ 152 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA-MGHTIVLFTHKEDLN 152 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG-GGGEEEEEECGGGGT
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh-hccEEEEEEcccccC
Confidence 225688999999999986222 2223334433321111 345666655 99996
No 141
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.79 E-value=2.3e-19 Score=140.87 Aligned_cols=118 Identities=23% Similarity=0.263 Sum_probs=81.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCC--CCC-------------ccccceeeeEEEEEEEE---CCEEEEEEEecCCCcc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGS--FTT-------------SFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQE 75 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~ 75 (160)
+..||+++|..++|||||+++|+... ... +.....++......+.+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999998621 110 01111222212222222 5556899999999999
Q ss_pred cccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
.+...+...+..+|++++|+|+++..+.+....|..... .++|+++++||+|+.+.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCcccc
Confidence 999888899999999999999998777777777766553 37899999999999743
No 142
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.79 E-value=2.9e-18 Score=123.13 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=80.4
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchh-------h
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA-------Y 84 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~-------~ 84 (160)
...++|+++|.+|+|||||+|+|.+..+. ....+..+.......+..++ ..+.+|||||...+...... +
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 34699999999999999999999987652 12222222223333444455 67999999998766533221 1
Q ss_pred --ccCCcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCC--CcEEEEEeCCCCC
Q 031411 85 --YRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDN--VNKILVGNKADMD 133 (160)
Q Consensus 85 --~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~--~pi~vv~~K~Dl~ 133 (160)
...+|++++|+|++.. ++.. -..|+..+......+ .|+++++||+|+.
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~ 167 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS 167 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence 2469999999998653 3332 346777776654433 6999999999996
No 143
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.79 E-value=1.3e-18 Score=131.49 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=91.2
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEE-------------------EE---CCEEEEEEEe
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTI-------------------EL---DGKRIKLQIW 69 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~-------------------~~---~~~~~~~~~~ 69 (160)
....++|+++|.+++|||||+++|.+....... +........ .. ......+.+|
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 80 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL----GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFI 80 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS----EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCccccccc----CccccceeeccccccccceecccccccccccccccccceEEEE
Confidence 345689999999999999999999985433211 000000000 00 1123689999
Q ss_pred cCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-CCChhHHHHHh
Q 031411 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-EAPFCLHETIL 148 (160)
Q Consensus 70 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~-~~~~~~~~~~~ 148 (160)
||||++.+.......+..+|++++|+|+++..++....+|+..+.... ..|+++++||+|+.+... ....++.+++.
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l 158 (403)
T 3sjy_A 81 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFT 158 (403)
T ss_dssp ECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHH
Confidence 999999999988899999999999999998776777777776665442 248999999999964321 22333444444
Q ss_pred h
Q 031411 149 L 149 (160)
Q Consensus 149 ~ 149 (160)
.
T Consensus 159 ~ 159 (403)
T 3sjy_A 159 K 159 (403)
T ss_dssp T
T ss_pred H
Confidence 3
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.78 E-value=1e-18 Score=130.24 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=80.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccc---------ccccchhhcc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAYYR 86 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~ 86 (160)
..|+++|.+|+|||||+|+|.+........+..+.+.....+.+++ ..+.+|||+|.-. +... ...+.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~ 256 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAK 256 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHHH
Confidence 3499999999999999999998776444344445556666777887 4689999999622 2221 22467
Q ss_pred CCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 87 GAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 87 ~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.+|++++|+|++++. ..+.+..|...+......+.|+++|+||+|+.+
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCC
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCC
Confidence 899999999998876 566666666666555445789999999999863
No 145
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.78 E-value=5.1e-19 Score=138.76 Aligned_cols=119 Identities=22% Similarity=0.293 Sum_probs=84.3
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcC--CCCC-------------ccccceeeeEEEEEEEE---CCEEEEEEEecCCCc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDG--SFTT-------------SFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ 74 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~ 74 (160)
+...+|+++|..++|||||+++|+.. .... +.....++......+.+ ++..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 45689999999999999999999752 1110 00111111111112222 455689999999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
..+...+...+..+|++++|+|+++..+.+....|..... .++|+++++||+|+.+.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSA 140 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCcccc
Confidence 9998888888999999999999999877777777766553 37899999999999743
No 146
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.78 E-value=6.3e-18 Score=127.86 Aligned_cols=141 Identities=14% Similarity=0.156 Sum_probs=89.6
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcC---CCCCcccc--ceeeeEEEEEEEE-------------C--C----EEEEEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDG---SFTTSFIT--TIGIDFKIRTIEL-------------D--G----KRIKLQI 68 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~~ 68 (160)
...++|+++|..++|||||+++|.+. .+..+..+ |....+....+.. + + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 35689999999999999999999853 23333334 3333333322221 1 1 1368999
Q ss_pred ecCCCcccccccchhhccCCcEEEEEEECCC----hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-CCChhH
Q 031411 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-EAPFCL 143 (160)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~-~~~~~~ 143 (160)
||+|||+.|.......+..+|++++|+|+++ +.+++.+.. +... ...|+++++||+|+.+... ....++
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL--GIDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT--TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc--CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence 9999999888777777888999999999985 344444432 2211 1348999999999974433 344567
Q ss_pred HHHHhhh-----cceEEEEee
Q 031411 144 HETILLT-----VQVHLVILK 159 (160)
Q Consensus 144 ~~~~~~~-----~~~~~~~~k 159 (160)
++++..+ ..+.++||+
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~ 180 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAH 180 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC---
T ss_pred HHHHHhhcCCCCCeEEEeeCC
Confidence 7777664 345555654
No 147
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.78 E-value=2.2e-19 Score=137.88 Aligned_cols=137 Identities=16% Similarity=0.096 Sum_probs=77.6
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhc--CCCCC-----------------------------ccccceeeeEEEEEEEECC
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSD--GSFTT-----------------------------SFITTIGIDFKIRTIELDG 61 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 61 (160)
...++|+++|..++|||||+++|+. +.+.. +.....+++.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4578999999999999999999974 22110 0011222222222334444
Q ss_pred EEEEEEEecCCCcccccccchhhccCCcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcc
Q 031411 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKR 137 (160)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p-i~vv~~K~Dl~~~~~ 137 (160)
..+.+||||||++|.......+..+|++|+|+|+++. .+|+...+|...+......++| +++++||+|+.+...
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 5789999999999988888889999999999999875 3343333344333332224677 999999999963221
Q ss_pred -----CCChhHHHHHhhhc
Q 031411 138 -----EAPFCLHETILLTV 151 (160)
Q Consensus 138 -----~~~~~~~~~~~~~~ 151 (160)
+...+++.+++.+.
T Consensus 199 ~~~~~~~i~~e~~~~l~~~ 217 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRV 217 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHh
Confidence 12234566666554
No 148
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.78 E-value=8e-19 Score=135.31 Aligned_cols=119 Identities=15% Similarity=0.089 Sum_probs=77.3
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCccccceeeeEEEEEEEECC
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIELDG 61 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (160)
...+||+++|.+++|||||+++|+.... ..+..+..+++.....+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 4579999999999999999999975411 111112222333333333333
Q ss_pred EEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHH-----HHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-----RNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
..+.+|||||++++...+...+..+|++++|+|+++...+..+ ..+...+... ....|+++++||+|+.+
T Consensus 111 --~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 111 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp --CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGT
T ss_pred --ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCccc
Confidence 6899999999999999899999999999999999986543221 1111111111 11346999999999973
No 149
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.78 E-value=1.8e-18 Score=131.76 Aligned_cols=135 Identities=17% Similarity=0.122 Sum_probs=88.4
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCC---CCc---------cc---------------------cceeeeEEEEEEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSF---TTS---------FI---------------------TTIGIDFKIRTIE 58 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~---------~~---------------------~~~~~~~~~~~~~ 58 (160)
.+..++|+++|..++|||||+++|+.... ... .. ...+++.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 35669999999999999999999985431 000 00 1112222222333
Q ss_pred ECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCcc
Q 031411 59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV-NKILVGNKADMDESKR 137 (160)
Q Consensus 59 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-pi~vv~~K~Dl~~~~~ 137 (160)
.++ ..+.+|||||+++|...+...+..+|++++|+|+++... ....+++..+... +. |+++++||+|+.+...
T Consensus 101 ~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~ 174 (434)
T 1zun_B 101 TAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDE 174 (434)
T ss_dssp CSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCH
T ss_pred cCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccH
Confidence 334 579999999999998888888999999999999987542 2333444433322 34 6999999999974221
Q ss_pred C---CChhHHHHHhhhcc
Q 031411 138 E---APFCLHETILLTVQ 152 (160)
Q Consensus 138 ~---~~~~~~~~~~~~~~ 152 (160)
+ ...++.++++.+++
T Consensus 175 ~~~~~i~~~~~~~~~~~g 192 (434)
T 1zun_B 175 RVFESIKADYLKFAEGIA 192 (434)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 1 12355667766665
No 150
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.78 E-value=1.7e-19 Score=138.05 Aligned_cols=114 Identities=25% Similarity=0.266 Sum_probs=74.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccc--------hhh
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAY 84 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~ 84 (160)
..++|+++|.+|+|||||+|+|.+..+. ....++.+.+.....+..++ ..+.+|||||...+...+ ...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 3479999999999999999999975432 23334444444444556677 568999999976544332 235
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
+..+|++++|+|.+++.+.+. ..|+..+. ..|+++|+||+|+.+.
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEK 345 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCG
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcc
Confidence 788999999999998766544 34554442 3699999999999643
No 151
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.77 E-value=3e-19 Score=128.52 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=73.1
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCC-Ccc-------ccceeeeEEEEEEEECCEEEEEEEecCCCcc-------cc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSF-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-------RF 77 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-------~~ 77 (160)
...++|+++|.+|+|||||+|+|.+.... ..+ .++.+.+.....+..++..+.+.+|||||.. .+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 35699999999999999999998865443 322 4555555555555556656799999999962 22
Q ss_pred cccc-------hhhcc-------------CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 78 RTIT-------TAYYR-------------GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 78 ~~~~-------~~~~~-------------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
..+. ..++. ++|+++++++.+.....+.-..++..+.. ++|+++|+||+|+.
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTL 157 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGS
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCC
Confidence 2222 22222 37799999977652222222334444432 78999999999985
No 152
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=2.6e-18 Score=131.07 Aligned_cols=110 Identities=26% Similarity=0.320 Sum_probs=74.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccc---------cccchhhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITTAYY 85 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~ 85 (160)
.+|+++|.+|||||||+|+|.+.... ....++.+.+.....+.+++. .+.+|||||.... ..++..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 48999999999999999999987643 334455555566667777774 6889999997542 23455678
Q ss_pred cCCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 86 RGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+++|++++|+|+.+..+.. .+..|+.. .+.|+++++||+|+.
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK------STVDTILVANKAENL 123 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEEESCCSH
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCc
Confidence 9999999999998754432 33334432 267999999999985
No 153
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.77 E-value=8.7e-19 Score=132.46 Aligned_cols=135 Identities=17% Similarity=0.093 Sum_probs=90.3
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcC--------CCCC---------ccccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDG--------SFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~--------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
....++|+++|..++|||||+++|.+. .+.. +.....+++.....+..++ ..+.+|||||+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~~~iiDtpG~ 85 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGH 85 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCS
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC--eEEEEEECCCh
Confidence 446799999999999999999999862 1111 0122223333222333333 57899999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcc--CCChhHHHHHhhhc
Q 031411 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKR--EAPFCLHETILLTV 151 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-i~vv~~K~Dl~~~~~--~~~~~~~~~~~~~~ 151 (160)
.+|.......+..+|++++|+|+++... ....+|+..+.. .++| +++++||+|+.+... +...++++++..++
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY 161 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence 9998888888999999999999987543 344555555543 2678 889999999973211 11223556666654
Q ss_pred c
Q 031411 152 Q 152 (160)
Q Consensus 152 ~ 152 (160)
+
T Consensus 162 ~ 162 (405)
T 2c78_A 162 E 162 (405)
T ss_dssp T
T ss_pred c
Confidence 4
No 154
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.76 E-value=6.1e-18 Score=123.22 Aligned_cols=132 Identities=15% Similarity=0.112 Sum_probs=86.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEEECCEEEEEEEecCCCcc---------cccccchh
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTA 83 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~ 83 (160)
+..+|+++|++|+|||||+|+|.+..... ...+..+.......+..++ .++.+|||||+. .+......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 44689999999999999999999876531 1122222222222334444 578999999986 23444566
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcce
Q 031411 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQV 153 (160)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (160)
.+..+|++++|+|+++ +....+|+..... ..+.|+++++||+|+.+ ......+..+++...++.
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~~~~~~ 148 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQ-EKADLLPHLQFLASQMNF 148 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCC-CHHHHHHHHHHHHTTSCC
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCc-cHHHHHHHHHHHHHhcCc
Confidence 7889999999999976 3333344433322 34789999999999973 122233455666665553
No 155
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.76 E-value=3.3e-18 Score=132.86 Aligned_cols=132 Identities=15% Similarity=0.116 Sum_probs=91.0
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCC------------------CC----CccccceeeeEEEEEEEECCEEEEEEEec
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGS------------------FT----TSFITTIGIDFKIRTIELDGKRIKLQIWD 70 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 70 (160)
....+|+++|.+++|||||+++|+... .. .+..+..+.......+...+ +.+.+||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 356899999999999999999996210 00 00112223333334455555 6799999
Q ss_pred CCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhh
Q 031411 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLT 150 (160)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~ 150 (160)
|||+..+...+...+..+|++|+|+|+++....+....|. .+. ..++|+++++||+|+.+... .+...++...
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~---~~~iPiivviNK~Dl~~~~~---~~~l~ei~~~ 161 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCR---LRHTPIMTFINKMDRDTRPS---IELLDEIESI 161 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHH---TTTCCEEEEEECTTSCCSCH---HHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEeCCCCccccH---HHHHHHHHHh
Confidence 9999999998899999999999999999876666554443 222 24789999999999963322 2334444444
Q ss_pred cce
Q 031411 151 VQV 153 (160)
Q Consensus 151 ~~~ 153 (160)
.+.
T Consensus 162 l~~ 164 (528)
T 3tr5_A 162 LRI 164 (528)
T ss_dssp HCC
T ss_pred hCC
Confidence 443
No 156
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.76 E-value=1.3e-19 Score=138.80 Aligned_cols=135 Identities=16% Similarity=0.093 Sum_probs=87.1
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcC--CCCC-----------------------------ccccceeeeEEEEEEEECC
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDG--SFTT-----------------------------SFITTIGIDFKIRTIELDG 61 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 61 (160)
...++|+++|..++|||||+++|+.. .+.. +.....+++.....+..++
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45699999999999999999999863 2111 0012222222223334444
Q ss_pred EEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChh---hHH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 031411 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFN---NIRNWIRNIEQHASDNVN-KILVGNKADMDE 134 (160)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~p-i~vv~~K~Dl~~ 134 (160)
..+.+||||||.+|.......+..+|++++|+|+++.. +|+ ...+.+..+.. .++| +++++||+|+.+
T Consensus 85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 57999999999999888888899999999999998642 221 22222222222 2555 999999999973
Q ss_pred Ccc---CCChhHHHHHhhhcc
Q 031411 135 SKR---EAPFCLHETILLTVQ 152 (160)
Q Consensus 135 ~~~---~~~~~~~~~~~~~~~ 152 (160)
... +...++.++++..++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g 180 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVG 180 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcC
Confidence 111 123345566655543
No 157
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.76 E-value=8.4e-18 Score=123.25 Aligned_cols=94 Identities=18% Similarity=0.237 Sum_probs=74.6
Q ss_pred EEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-CCCC
Q 031411 53 KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDNV 121 (160)
Q Consensus 53 ~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~-~~~~ 121 (160)
....+..++ +.+.+||++|++++...|..++++++++++|||++ +..+++....|+..+.... ..++
T Consensus 158 ~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~ 235 (327)
T 3ohm_A 158 IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 235 (327)
T ss_dssp EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence 334455555 78999999999999999999999999999999654 5677888888888876543 2579
Q ss_pred cEEEEEeCCCCCCCc---------------cCCChhHHHHHh
Q 031411 122 NKILVGNKADMDESK---------------REAPFCLHETIL 148 (160)
Q Consensus 122 pi~vv~~K~Dl~~~~---------------~~~~~~~~~~~~ 148 (160)
|+++++||+|+.+.. ..+..+++.+++
T Consensus 236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi 277 (327)
T 3ohm_A 236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI 277 (327)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHH
T ss_pred eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHH
Confidence 999999999985321 146788898884
No 158
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.76 E-value=6.3e-19 Score=131.35 Aligned_cols=137 Identities=21% Similarity=0.301 Sum_probs=75.2
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCC-Ccc--------ccceeeeEEEEEEEECCEEEEEEEecCCCc-------cc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------ER 76 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~~ 76 (160)
...++|+|+|++|+|||||+++|.+.... ..+ .++.+.......+..++....+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 44689999999999999999998764322 221 134444443344445666678999999998 66
Q ss_pred ccccch-------hhccCC-------------cEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 77 FRTITT-------AYYRGA-------------MGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 77 ~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
+..++. .++..+ |+++++++.+ ..++..+. .|+..+ ..++|+++|+||+|+..
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~- 188 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLT- 188 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSC-
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCC-
Confidence 666654 444332 3444444431 34444443 344333 34789999999999963
Q ss_pred ccCCCh--hHHHHHhhhcceEE
Q 031411 136 KREAPF--CLHETILLTVQVHL 155 (160)
Q Consensus 136 ~~~~~~--~~~~~~~~~~~~~~ 155 (160)
..++.. +++.+++..+++.+
T Consensus 189 ~~ev~~~k~~i~~~~~~~~i~~ 210 (361)
T 2qag_A 189 LKERERLKKRILDEIEEHNIKI 210 (361)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCS
T ss_pred HHHHHHHHHHHHHHHHHCCCCE
Confidence 222322 56777777776543
No 159
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.76 E-value=9e-19 Score=138.13 Aligned_cols=121 Identities=17% Similarity=0.116 Sum_probs=80.8
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCcc-------------------------------ccceeeeEEEEEEEEC
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF-------------------------------ITTIGIDFKIRTIELD 60 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 60 (160)
....+||+++|.+++|||||+++|+........ .+..+++.....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 345789999999999999999999865321110 1222333333334444
Q ss_pred CEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChh---hHHHHHHHHHHHHHhcCCC-CcEEEEEeCCCCCC
Q 031411 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWIRNIEQHASDN-VNKILVGNKADMDE 134 (160)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~-~pi~vv~~K~Dl~~ 134 (160)
+ ..+.+|||||+.++.......+..+|++|+|+|+++.. ++....++...+......+ .|+++++||+|+.+
T Consensus 244 ~--~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 244 R--ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp S--CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred C--ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 4 57999999999999888888999999999999998642 1111112222222222224 35999999999974
No 160
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.76 E-value=3.7e-18 Score=129.22 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=88.2
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcC---CCCCcccc--ceeeeEEEEEEEE-------------C--C----EEEE
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDG---SFTTSFIT--TIGIDFKIRTIEL-------------D--G----KRIK 65 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~ 65 (160)
......++|+++|..++|||||+++|.+. .+..+..+ |....+....+.. . + ....
T Consensus 5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 84 (410)
T 1kk1_A 5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR 84 (410)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence 34567799999999999999999999853 23333334 3322333222221 0 1 1368
Q ss_pred EEEecCCCcccccccchhhccCCcEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-CCC
Q 031411 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR-EAP 140 (160)
Q Consensus 66 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~-~~~ 140 (160)
+.+||+|||+.|.......+..+|++++|+|+++. .+.+.+.. +... ...|+++++||+|+.+... ...
T Consensus 85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~--~~~~iivviNK~Dl~~~~~~~~~ 158 (410)
T 1kk1_A 85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII--GQKNIIIAQNKIELVDKEKALEN 158 (410)
T ss_dssp EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH--TCCCEEEEEECGGGSCHHHHHHH
T ss_pred EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc--CCCcEEEEEECccCCCHHHHHHH
Confidence 99999999998877777777889999999999853 44444432 2222 1348999999999974322 233
Q ss_pred hhHHHHHhhh
Q 031411 141 FCLHETILLT 150 (160)
Q Consensus 141 ~~~~~~~~~~ 150 (160)
.++++++...
T Consensus 159 ~~~i~~~l~~ 168 (410)
T 1kk1_A 159 YRQIKEFIEG 168 (410)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 4556666653
No 161
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.75 E-value=3.8e-20 Score=143.47 Aligned_cols=128 Identities=18% Similarity=0.154 Sum_probs=90.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
+.++|+++|.+++|||||+++|.+..+.....++.+.++....+..++ ...+.|||||||+.|..++...+..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 346899999999999999999997665444444444444333333322 1368999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHH
Q 031411 94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHET 146 (160)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~ 146 (160)
|+|+++....+... .+......++|+++++||+|+.+........+..+
T Consensus 82 VVDa~dg~~~qt~e----~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~ 130 (537)
T 3izy_P 82 VVAADDGVMKQTVE----SIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLA 130 (537)
T ss_dssp ECBSSSCCCHHHHH----HHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHH
T ss_pred EEECCCCccHHHHH----HHHHHHHcCCcEEEEEecccccccchHHHHHHHHh
Confidence 99998855443332 22222234789999999999975444433343433
No 162
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.75 E-value=1e-17 Score=124.29 Aligned_cols=93 Identities=16% Similarity=0.259 Sum_probs=76.1
Q ss_pred EEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhc-CCCCcE
Q 031411 55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQHA-SDNVNK 123 (160)
Q Consensus 55 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~pi 123 (160)
..+..++ +.+.+||++|++.+...|..++++++++|+|||+++ ..+++....|+..+..+. ..++|+
T Consensus 186 ~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi 263 (353)
T 1cip_A 186 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 263 (353)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence 3445554 789999999999999999999999999999999998 467888888998887642 257999
Q ss_pred EEEEeCCCCCCCc--------------cCCChhHHHHHhh
Q 031411 124 ILVGNKADMDESK--------------REAPFCLHETILL 149 (160)
Q Consensus 124 ~vv~~K~Dl~~~~--------------~~~~~~~~~~~~~ 149 (160)
+|++||+|+.+.. ..+..+++.+++.
T Consensus 264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~ 303 (353)
T 1cip_A 264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ 303 (353)
T ss_dssp EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHH
T ss_pred EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHH
Confidence 9999999985221 1367888988886
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.75 E-value=9.5e-18 Score=126.47 Aligned_cols=133 Identities=17% Similarity=0.093 Sum_probs=87.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCC-------CC---------CccccceeeeEEEEEEEECCEEEEEEEecCCCcccc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGS-------FT---------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (160)
..+||+++|..++|||||+++|.+.. +. .+.....+++.. ...+......+.+|||||+.+|
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~--~~~~~~~~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAA--HVEYSTAARHYAHTDCPGHADY 79 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECE--EEEEECSSCEEEEEECSSHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEee--eEEeccCCeEEEEEECCChHHH
Confidence 35899999999999999999998631 11 011222233322 2233323357899999999998
Q ss_pred cccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcc--CCChhHHHHHhhhcc
Q 031411 78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKR--EAPFCLHETILLTVQ 152 (160)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-i~vv~~K~Dl~~~~~--~~~~~~~~~~~~~~~ 152 (160)
.......+..+|++++|+|+++....+... ++..+.. .++| +++++||+|+.+... +...++++++..+++
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 153 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG 153 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcC
Confidence 887888899999999999998854333322 2233332 2678 789999999974211 122345666766554
No 164
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.73 E-value=2.6e-18 Score=130.96 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=72.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcc--------cccccchhhcc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAYYR 86 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~ 86 (160)
.+|+++|.+|+|||||+|+|.+.... ....+..+.+.....+..++ ..+.+|||+|+. .+..++..+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999986543 22233333344434444444 478999999975 45556677889
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.+|++++|+|+.++.+... .|+..+.+ ..+.|+++++||+|+.+
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC--
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCcc
Confidence 9999999999987655433 33333322 24789999999999864
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.72 E-value=9.7e-19 Score=134.64 Aligned_cols=112 Identities=18% Similarity=0.221 Sum_probs=81.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEE
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 93 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 93 (160)
+..+|+++|+.++|||||+++|....+.....++.+.+.....+..++ ..+.|||||||+.|..++...+..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 446899999999999999999987554433333333222222333344 368999999999999999889999999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 94 VYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 94 v~d~~~---~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
|+|+++ +.+.+.+ ..+. ..++|+++++||+|+.+
T Consensus 81 VVda~~g~~~qT~e~l----~~~~---~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI----QHAK---AAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp EEETTTBSCTTTHHHH----HHHH---HTTCCEEEEEECSSSST
T ss_pred EeecccCccHHHHHHH----HHHH---hcCceEEEEEEeccccc
Confidence 999987 3333332 2222 23789999999999964
No 166
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.72 E-value=4.5e-17 Score=130.15 Aligned_cols=121 Identities=20% Similarity=0.198 Sum_probs=86.1
Q ss_pred CCCCeeEEEEEEcCCCCCHHHHHHHHhcC--CCC------C----------ccccceeeeEEEEEEEECCEEEEEEEecC
Q 031411 10 ADYDYLIKLLLIGDSGVGKSCLLLRFSDG--SFT------T----------SFITTIGIDFKIRTIELDGKRIKLQIWDT 71 (160)
Q Consensus 10 ~~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 71 (160)
...+...+|+++|..++|||||+++|+.. .+. . +.....++......+..++ +.+++|||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDT 84 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDT 84 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECC
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEEC
Confidence 44567799999999999999999999831 110 0 0011222223333444555 68999999
Q ss_pred CCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 031411 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESK 136 (160)
Q Consensus 72 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~ 136 (160)
||+..+...+...+..+|++++|+|+++..+.+....|.. +.. .++|+++++||+|+.+..
T Consensus 85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTCC
T ss_pred cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCcccCC
Confidence 9999988888899999999999999998777766655553 222 378999999999997443
No 167
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.72 E-value=5.9e-17 Score=123.58 Aligned_cols=116 Identities=24% Similarity=0.222 Sum_probs=76.0
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccc----------
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT---------- 81 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~---------- 81 (160)
+..++++++|++|+|||||+|+|.+.... ....++.+.+.....+..++. .+.+|||+|..+.....
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 35689999999999999999999987542 223334444455556777874 67899999974332211
Q ss_pred --hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 82 --TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 82 --~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
...+..+|++++++|+++..+.+.. .+...+.. .+.|+++++||+|+.+
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVV 306 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGST
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCC
Confidence 2356789999999999876555432 22222222 3789999999999964
No 168
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.71 E-value=5e-19 Score=139.17 Aligned_cols=118 Identities=21% Similarity=0.203 Sum_probs=62.0
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCccccceeeeEEEEEEEEC
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS-------------------------------FTTSFITTIGIDFKIRTIELD 60 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (160)
....++|+++|.+++|||||+++|+... +..+..++.+++.....+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4567899999999999999999996311 011112233333333333333
Q ss_pred CEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChh---hH---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCC
Q 031411 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SF---NNIRNWIRNIEQHASDNVN-KILVGNKADMD 133 (160)
Q Consensus 61 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~p-i~vv~~K~Dl~ 133 (160)
...+.||||||+..|.......+..+|++|+|+|+++.. .+ ....+.+..+.. .++| +++++||+|+.
T Consensus 254 --~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 254 --KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLM 328 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGG
T ss_pred --CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccc
Confidence 368899999999999888888899999999999998532 11 011111111221 2555 99999999996
Q ss_pred C
Q 031411 134 E 134 (160)
Q Consensus 134 ~ 134 (160)
+
T Consensus 329 ~ 329 (592)
T 3mca_A 329 S 329 (592)
T ss_dssp T
T ss_pred c
Confidence 3
No 169
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.71 E-value=6.3e-17 Score=125.77 Aligned_cols=117 Identities=16% Similarity=0.109 Sum_probs=79.1
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCc----------------------cccceeeeEEEEEEEECCEEEEEEEec
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------------------FITTIGIDFKIRTIELDGKRIKLQIWD 70 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D 70 (160)
....+|+++|.+++|||||+++|+....... .....++......+..++ +.+.+||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 3568999999999999999999986311000 001111111122334444 6899999
Q ss_pred CCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
|||+..+.......+..+|++|+|+|+++..... ..+++..+ ...++|+++++||+|+.+.
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCCS
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCccc
Confidence 9999998888888999999999999998753221 12222222 2347899999999999744
No 170
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.71 E-value=3.2e-17 Score=133.39 Aligned_cols=126 Identities=21% Similarity=0.208 Sum_probs=88.1
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCC------------CC----Cccccceeee--EEEEEEE------------ECC
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS------------FT----TSFITTIGID--FKIRTIE------------LDG 61 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~------------~~----~~~~~~~~~~--~~~~~~~------------~~~ 61 (160)
.+...||+|+|..++|||||+++|+... +. .+..+..++. .....+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3456899999999999999999998631 10 0011111111 1112222 134
Q ss_pred EEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCCh
Q 031411 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPF 141 (160)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~ 141 (160)
..+.+++|||||+.+|...+..+++.+|++|+|+|+.+..+++....|..... .++|+++++||+|+...+.....
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~~~e~~~~~ 171 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRALLELQVSK 171 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHHHHTSCCCH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcchhhhccCH
Confidence 46899999999999999999999999999999999999877777665654332 37899999999998643333333
No 171
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.70 E-value=6.1e-18 Score=129.59 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=74.2
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCC--------cccccccchh
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG--------QERFRTITTA 83 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~ 83 (160)
....+|+++|.+|||||||+|+|.+.... ....+..+.+.. ..........+.+||||| ++.+..+...
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~--~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRI--YSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CE--EEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEE--EEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 34579999999999999999999986543 222222332222 223332235799999999 6667777788
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+++.+|++++|+|..+... ....|+..+.+ ..+.|+++++||+|+.
T Consensus 99 ~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~--~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVT--AADEEVAKILY--RTKKPVVLAVNKLDNT 144 (456)
T ss_dssp HHHHCSEEEEEEESSSCSC--HHHHHHHHHHT--TCCSCEEEEEECC---
T ss_pred hHhhCCEEEEEEeCCCCCC--hHHHHHHHHHH--HcCCCEEEEEECccch
Confidence 8899999999999876322 22334433332 2478999999999986
No 172
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.70 E-value=2.4e-16 Score=126.14 Aligned_cols=132 Identities=17% Similarity=0.051 Sum_probs=88.9
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCC--CCCc----------------cccceeeeEEEEEEEEC-----CEEEEEEE
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGS--FTTS----------------FITTIGIDFKIRTIELD-----GKRIKLQI 68 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~----------------~~~~~~~~~~~~~~~~~-----~~~~~~~~ 68 (160)
.+...+|+++|..++|||||+++|+... +... .....++......+.++ +..+.+++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 3456899999999999999999997421 1100 01112222222233332 23478999
Q ss_pred ecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHH
Q 031411 69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETI 147 (160)
Q Consensus 69 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~ 147 (160)
|||||+..|...+...++.+|++|+++|+++....+....|.. .. ..++|+++++||+|+.........+++++.
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~~~ip~ilviNKiD~~~~~~~~~~~~l~~~ 161 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN---KYKVPRIAFVNKMDRMGANFLKVVNQIKTR 161 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH---HcCCCEEEEEeCCCcccccHHHHHHHHHHH
Confidence 9999999998888889999999999999998765544443432 22 237899999999999754433334444433
No 173
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=1.1e-16 Score=127.99 Aligned_cols=117 Identities=20% Similarity=0.184 Sum_probs=83.9
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhc--CCCCCc----------------cccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSD--GSFTTS----------------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
+...+|+++|.+++|||||+++|+. +.+... ..+..++......+..++ ..+++|||||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence 4578999999999999999999984 221100 011112222233445555 67999999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
..+...+...++.+|++++|+|+++..+.+....|.. +.. .++|+++++||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCcccc
Confidence 9998888889999999999999998766666555543 332 37899999999999743
No 174
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.70 E-value=1.2e-17 Score=124.75 Aligned_cols=119 Identities=9% Similarity=0.058 Sum_probs=83.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEE
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 96 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (160)
+|+++|.+++|||||+++|. .+..+++.....+..++ ..+.+|||||+++|.......+..+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 12222223333333444 469999999999987777778899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEe-CCCCCCCcc-CCChhHHHHHhhhc
Q 031411 97 VTDESSFNNIRNWIRNIEQHASDNVNK-ILVGN-KADMDESKR-EAPFCLHETILLTV 151 (160)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~pi-~vv~~-K~Dl~~~~~-~~~~~~~~~~~~~~ 151 (160)
+ ...+....+++..+... ++|. ++++| |+|+ +... +...++++++....
T Consensus 93 -~-~g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~ 144 (370)
T 2elf_A 93 -P-QGLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT 144 (370)
T ss_dssp -T-TCCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS
T ss_pred -C-CCCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc
Confidence 4 34445556666555442 5677 88889 9999 3321 11235667776654
No 175
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.69 E-value=8e-17 Score=118.51 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=65.4
Q ss_pred EEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-CCCCcEE
Q 031411 56 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDNVNKI 124 (160)
Q Consensus 56 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~-~~~~pi~ 124 (160)
.+..++ +.+.+||++|++++..+|..++++++++|+|||++ +..+++....|+..+.... ..++|++
T Consensus 155 ~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~pii 232 (340)
T 4fid_A 155 DFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKL 232 (340)
T ss_dssp EEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEE
T ss_pred EEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEE
Confidence 344444 78999999999999999999999999999999998 6788888888988886643 3589999
Q ss_pred EEEeCCCCC
Q 031411 125 LVGNKADMD 133 (160)
Q Consensus 125 vv~~K~Dl~ 133 (160)
|++||+|+.
T Consensus 233 Lv~NK~DL~ 241 (340)
T 4fid_A 233 IFLNKMDLF 241 (340)
T ss_dssp EEEECHHHH
T ss_pred EEEECchhh
Confidence 999999974
No 176
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.69 E-value=2.9e-17 Score=128.99 Aligned_cols=112 Identities=18% Similarity=0.174 Sum_probs=78.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCcc----ccceeeeEEEEEEEE---------CC-----EEEEEEEecCCCcc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF----ITTIGIDFKIRTIEL---------DG-----KRIKLQIWDTAGQE 75 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~----~~~~~~~~~~~~~~~---------~~-----~~~~~~~~D~~g~~ 75 (160)
+.++|+++|..++|||||+++|.+..+.... ..+.+. ....... .+ ....+.+|||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~--~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGA--TEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTE--EEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCe--EEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 3469999999999999999999875432211 112121 1111100 00 11258999999999
Q ss_pred cccccchhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 76 RFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.|..++...+..+|++++|+|+++ +.+++.+.. +.. .++|+++++||+|+.+
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIH 136 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGST
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEeccccccc
Confidence 999999888999999999999998 666655432 222 3789999999999964
No 177
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.68 E-value=3.1e-17 Score=135.25 Aligned_cols=138 Identities=20% Similarity=0.118 Sum_probs=87.7
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCC-------CCC-------ccccceeeeEEEEEEEECCEEEEEEEecCCCccc
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGS-------FTT-------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (160)
.....++|+++|..++|||||+++|.+.. +.. ......+++.....+.++.....+.+|||||+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34567999999999999999999998631 000 0011112111111223333336789999999999
Q ss_pred ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcc--CCChhHHHHHhhhcc
Q 031411 77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDESKR--EAPFCLHETILLTVQ 152 (160)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-i~vv~~K~Dl~~~~~--~~~~~~~~~~~~~~~ 152 (160)
|.......+..+|++|+|+|+++.... ...+++..+... ++| +++++||+|+.+... +...++++++..+++
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence 988888889999999999999875332 233444444332 677 789999999974211 112345666666554
No 178
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.68 E-value=4.4e-16 Score=116.92 Aligned_cols=76 Identities=18% Similarity=0.314 Sum_probs=67.5
Q ss_pred EEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhc-CCCCcEE
Q 031411 56 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQHA-SDNVNKI 124 (160)
Q Consensus 56 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~pi~ 124 (160)
.+.+++ +.+.+||++|++.+...|..++++++++|+|||+++ ..+|+....|+..+.... ..++|++
T Consensus 211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii 288 (402)
T 1azs_C 211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 288 (402)
T ss_dssp EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence 445555 789999999999999999999999999999999999 889999999999987653 3578999
Q ss_pred EEEeCCCCC
Q 031411 125 LVGNKADMD 133 (160)
Q Consensus 125 vv~~K~Dl~ 133 (160)
|++||+|+.
T Consensus 289 LvgNK~DL~ 297 (402)
T 1azs_C 289 LFLNKQDLL 297 (402)
T ss_dssp EEEECHHHH
T ss_pred EEEEChhhh
Confidence 999999985
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.68 E-value=8.9e-17 Score=119.72 Aligned_cols=136 Identities=14% Similarity=0.153 Sum_probs=83.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeee---EE-------------------------------------
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGID---FK------------------------------------- 53 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~---~~------------------------------------- 53 (160)
...+|+|+|++|||||||+++|.+..+........+.. ..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 34599999999999999999999976632211111100 00
Q ss_pred --------------EEEEEECCEEEEEEEecCCCcccc-------------cccchhhccCCcEEEEEEECCChhhHHHH
Q 031411 54 --------------IRTIELDGKRIKLQIWDTAGQERF-------------RTITTAYYRGAMGILLVYDVTDESSFNNI 106 (160)
Q Consensus 54 --------------~~~~~~~~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 106 (160)
...+... ....+.+|||||...+ ..+...++.++|+++++++.++.+...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-- 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEET-TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred HhcCCCCCcccceEEEEEeCC-CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence 0000111 1135899999997665 445667889999999999876543221
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcce
Q 031411 107 RNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQV 153 (160)
Q Consensus 107 ~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (160)
..|+..+....+.+.|+++|+||+|+.+.. ....+.++.+...++.
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 235 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDKG-TDAVEILEGRSFKLKY 235 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCTT-CCSHHHHTTSSSCCSS
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCCc-ccHHHHHcCccccccC
Confidence 234444444455578999999999986332 2333334433433333
No 180
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=1.5e-16 Score=119.75 Aligned_cols=85 Identities=20% Similarity=0.217 Sum_probs=47.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEE--E-------------------EECC-EEEEEEEecCCC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRT--I-------------------ELDG-KRIKLQIWDTAG 73 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~~~D~~g 73 (160)
++|+++|.+|+|||||+|+|.+........+..+.+..... + .+++ ..+++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 48999999999999999999987633222222222222111 1 1233 247899999999
Q ss_pred ccc----ccccch---hhccCCcEEEEEEECCCh
Q 031411 74 QER----FRTITT---AYYRGAMGILLVYDVTDE 100 (160)
Q Consensus 74 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 100 (160)
... ...+.. ..++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222222 346899999999999875
No 181
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.66 E-value=3.6e-16 Score=115.93 Aligned_cols=72 Identities=13% Similarity=0.220 Sum_probs=62.6
Q ss_pred EEEEEEEecCCCcccccccchhhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCC
Q 031411 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDNVNKILVGNKA 130 (160)
Q Consensus 62 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~-~~~~pi~vv~~K~ 130 (160)
..+.+.+||++|++.+..+|..++++++++|+|||++ +..+++....|+..+.... ..++|++|++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 7889999999998887643 2578999999999
Q ss_pred CCC
Q 031411 131 DMD 133 (160)
Q Consensus 131 Dl~ 133 (160)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 984
No 182
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.65 E-value=5.6e-16 Score=112.33 Aligned_cols=120 Identities=14% Similarity=0.173 Sum_probs=75.9
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCc------cccce----------------------eee------------
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTS------FITTI----------------------GID------------ 51 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~------~~~~~----------------------~~~------------ 51 (160)
....++|+|+|.+|+|||||+|+|.+..+... ..++. +.+
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999998776311 11210 000
Q ss_pred -----------EEEEEEEECCEEEEEEEecCCCcc-------------cccccchhhccCCcEEE-EEEECCChhhHHHH
Q 031411 52 -----------FKIRTIELDGKRIKLQIWDTAGQE-------------RFRTITTAYYRGAMGIL-LVYDVTDESSFNNI 106 (160)
Q Consensus 52 -----------~~~~~~~~~~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~ 106 (160)
.....+...+ ...+.+|||||.. .+..+...++..++.++ +++|+++..+....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~-~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred hcccCCCccccceEEEEeCCC-CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 0000001110 2478999999964 23345566777888666 78999875443333
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 107 RNWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 107 ~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
..++..+. ..+.|+++|+||+|+.+.
T Consensus 182 ~~~~~~~~---~~~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 182 LKIAKEVD---PQGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHHHC---TTCSSEEEEEECGGGSCT
T ss_pred HHHHHHhC---CCCCeEEEEEEccccCCC
Confidence 33444443 347899999999999643
No 183
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.64 E-value=4.7e-16 Score=107.17 Aligned_cols=131 Identities=20% Similarity=0.260 Sum_probs=76.5
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccc----------ccccch
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITT 82 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~ 82 (160)
....+++++|++|+|||||++++.+..+.....++.+.......+..++ .+.+||+||... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4457999999999999999999998764332233333222222333333 467999999742 222222
Q ss_pred hhc---cCCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-cCCChhHHHHHhhhcc
Q 031411 83 AYY---RGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKILVGNKADMDESK-REAPFCLHETILLTVQ 152 (160)
Q Consensus 83 ~~~---~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~-~~~~~~~~~~~~~~~~ 152 (160)
.++ ..++++++++|++.+.+.. .+..|+. ..++|+++++||+|+.... .+...+.+++++.+.+
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~------~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~ 170 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV------DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFN 170 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH------HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH------HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC
Confidence 333 4789999999998765442 2333332 1368999999999985321 2222455666665543
No 184
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.63 E-value=4e-16 Score=113.99 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=45.3
Q ss_pred EEEEEecCCCccc-------------ccccchhhccCCcEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCcEEEEEeC
Q 031411 64 IKLQIWDTAGQER-------------FRTITTAYYRGAMGILLVYDVTDESSF-NNIRNWIRNIEQHASDNVNKILVGNK 129 (160)
Q Consensus 64 ~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~pi~vv~~K 129 (160)
..+.+|||||... +......++.++|++++++|.++.... .....++..+ ...+.|+++++||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence 4689999999653 334456678899999999997443211 1111222222 2347899999999
Q ss_pred CCCCCC
Q 031411 130 ADMDES 135 (160)
Q Consensus 130 ~Dl~~~ 135 (160)
+|+.+.
T Consensus 208 ~Dl~~~ 213 (315)
T 1jwy_B 208 LDLMDK 213 (315)
T ss_dssp TTSSCS
T ss_pred cccCCc
Confidence 999643
No 185
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.63 E-value=1.7e-15 Score=112.31 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=56.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEE---------------EEEEEecCCCccccc--
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR-- 78 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~~-- 78 (160)
++|+++|.+|+|||||+|+|.+........+..+.+.....+.+.+.+ ..+.+||+||..+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 689999999999999999999876433323322333332334444421 478999999986542
Q ss_pred --ccc---hhhccCCcEEEEEEECCC
Q 031411 79 --TIT---TAYYRGAMGILLVYDVTD 99 (160)
Q Consensus 79 --~~~---~~~~~~~~~~i~v~d~~~ 99 (160)
.+. ...++++|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 222 234789999999999986
No 186
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.63 E-value=2e-16 Score=123.51 Aligned_cols=120 Identities=19% Similarity=0.199 Sum_probs=80.1
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCC---CccccceeeeEEEE--------------------------------
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIR-------------------------------- 55 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~-------------------------------- 55 (160)
..+...+|+|+|.+|+|||||+|+|++..+. ....+++.......
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 4456789999999999999999999987753 22222221100000
Q ss_pred ----EEEECCE-EEEEEEecCCCccc-----------ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCC
Q 031411 56 ----TIELDGK-RIKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD 119 (160)
Q Consensus 56 ----~~~~~~~-~~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 119 (160)
.+...+. ...+.+|||||... +...+..++..+|++++|+|+++....+....|+..+.. .
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~ 217 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---H 217 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---C
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---c
Confidence 0000000 02588999999764 334556678899999999999875555556666655543 3
Q ss_pred CCcEEEEEeCCCCC
Q 031411 120 NVNKILVGNKADMD 133 (160)
Q Consensus 120 ~~pi~vv~~K~Dl~ 133 (160)
+.|+++|+||+|+.
T Consensus 218 ~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 218 EDKIRVVLNKADMV 231 (550)
T ss_dssp GGGEEEEEECGGGS
T ss_pred CCCEEEEEECCCcc
Confidence 57999999999986
No 187
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.60 E-value=7.4e-15 Score=114.60 Aligned_cols=129 Identities=13% Similarity=0.047 Sum_probs=91.1
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCC----------------------CCCccccceeeeEEEEEEEECCEEEEEEEec
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGS----------------------FTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 70 (160)
.+.-||+|+|..++|||||..+|+... .+.+..+..++......+.+++ +.++|+|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence 456799999999999999999996211 0122333333434445566677 6799999
Q ss_pred CCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHH
Q 031411 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETI 147 (160)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~ 147 (160)
||||..|.......++-+|++|+|+|+...-..+...-|..... .++|.+++.||+|..........+++++.
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~----~~lp~i~fINK~Dr~~ad~~~~~~~i~~~ 179 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM----RATPVMTFVNKMDREALHPLDVMADIEQH 179 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCCEEEEEECTTSCCCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH----hCCceEEEEecccchhcchhHhhhhhhhh
Confidence 99999999999999999999999999988655555544543333 38899999999999755554444555443
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=4.8e-15 Score=112.05 Aligned_cols=140 Identities=17% Similarity=0.214 Sum_probs=75.4
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCcc--------ccceeeeEEEEEEEECCEEEEEEEecCCCccccc----
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---- 78 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---- 78 (160)
-....++|+|+|++|+|||||++.|.+..+.... .++.........+...+....+++||++|.....
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 3445688999999999999999999987653111 1122211111112223333578999999965431
Q ss_pred ---c------------------cchhhccCCcEEEEEEECCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 79 ---T------------------ITTAYYRGAMGILLVYDVTDE-SSFNNIR-NWIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 79 ---~------------------~~~~~~~~~~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
. +...++.++++.+++|..... .+++.+. .|+..+. .++|+++|+||+|+..
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~- 181 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLT- 181 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCcc-
Confidence 1 122344555554445544322 2344433 5666553 3789999999999863
Q ss_pred ccCCCh--hHHHHHhhhcceEE
Q 031411 136 KREAPF--CLHETILLTVQVHL 155 (160)
Q Consensus 136 ~~~~~~--~~~~~~~~~~~~~~ 155 (160)
..++.. +++.+++..+++.+
T Consensus 182 ~~ev~~~k~~i~~~~~~~~i~~ 203 (418)
T 2qag_C 182 PEECQQFKKQIMKEIQEHKIKI 203 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCeE
Confidence 222332 56677777766544
No 189
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.58 E-value=1.8e-14 Score=114.77 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=87.8
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCcc------------------ccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF------------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
+...+|+++|+.|+|||||+++|.+....... ....++......+...+ +.+++|||||+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCCc
Confidence 45679999999999999999999843221000 11223333333444444 68999999999
Q ss_pred ccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcc
Q 031411 75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQ 152 (160)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~ 152 (160)
..+.......+..+|++++++|+.+...... .+++..+.. .++|+++++||+|+. .. ..+..+++...++
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~-~~---~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG-GD---YYALLEDLRSTLG 154 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC-CC---HHHHHHHHHHHHC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh-hh---HHHHHHHHHHHhC
Confidence 9988888889999999999999876543322 244444433 378999999999986 22 3333444544443
No 190
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.58 E-value=7.3e-15 Score=117.53 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=78.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceee----e----EE-E-----------------------------
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGI----D----FK-I----------------------------- 54 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~----~----~~-~----------------------------- 54 (160)
..++|+|+|.+|+|||||+|+|++..... ...+++.. . .. .
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 46899999999999999999999866432 22222210 0 00 0
Q ss_pred ---------------EEEEECCEE--EEEEEecCCCccc---ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHH
Q 031411 55 ---------------RTIELDGKR--IKLQIWDTAGQER---FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114 (160)
Q Consensus 55 ---------------~~~~~~~~~--~~~~~~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~ 114 (160)
..+...... ..+.+|||||... .......++..+|++++|+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 000010000 2589999999654 33445577889999999999998877766655554443
Q ss_pred HhcCCCCcEEEEEeCCCCCC
Q 031411 115 QHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 115 ~~~~~~~pi~vv~~K~Dl~~ 134 (160)
. .+.|+++|+||+|+.+
T Consensus 228 ~---~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 228 G---RGLTVFFLVNAWDQVR 244 (695)
T ss_dssp T---SCCCEEEEEECGGGGG
T ss_pred h---hCCCEEEEEECccccc
Confidence 2 3678999999999863
No 191
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.57 E-value=1.2e-14 Score=109.82 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=88.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccc----ccccchh---hccCCc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTA---YYRGAM 89 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~---~~~~~~ 89 (160)
.++++|++|+|||||++.|.+........+..+.......+..++ ...+.+||+||... +..+... ....++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999998643211112222233334445543 24689999999632 2222222 245799
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcc--eEEEEe
Q 031411 90 GILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKILVGNKADMDESKREAPFCLHETILLTVQ--VHLVIL 158 (160)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (160)
.++.++|++ ...++.+..|..++..+.. .+.|.++++||+|+... ...++.++...+.+ +.++||
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTSCEEECCT
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHHhcCCeEEEEEC
Confidence 999999998 6677788878777765432 25689999999999633 23444555555444 344443
No 192
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.9e-14 Score=105.58 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=83.2
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccccc----c---cchhhc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----T---ITTAYY 85 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~---~~~~~~ 85 (160)
....+|.++|.||+|||||+|+|++........+..+.+.....+.+.+ .+++++|+||-.... . .....+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 3457999999999999999999998776656667777778888888888 578999999953211 1 122346
Q ss_pred cCCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 86 RGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 86 ~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+.+|++++|+|++++.. .+.+...+..+.... ...|..++.||.|..
T Consensus 148 ~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEKG 195 (376)
T ss_dssp HHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSSS
T ss_pred HhcCccccccccCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhhh
Confidence 78999999999998643 233333332222111 245778889999963
No 193
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.54 E-value=2.2e-15 Score=109.72 Aligned_cols=141 Identities=21% Similarity=0.263 Sum_probs=71.2
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcC-CCCCcc--------ccceeeeEEEEEEEECCEEEEEEEecCCCc-------
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDG-SFTTSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ------- 74 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~------- 74 (160)
-....++|+++|++|+|||||+++|.+. .++... .++............++....+++||++|.
T Consensus 14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~ 93 (301)
T 2qnr_A 14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence 3455689999999999999999998875 433222 111111111112222333468999999997
Q ss_pred ccccccch-------hhccC-------------CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 75 ERFRTITT-------AYYRG-------------AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 75 ~~~~~~~~-------~~~~~-------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
+.+..+.. .++.. +++++++.+.+. .+++.+.. ..+.... ...|+++|+||+|+..
T Consensus 94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~-~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIH-NKVNIVPVIAKADTLT 169 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHT-TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHH-hcCCEEEEEEeCCCCC
Confidence 44544443 33322 233444444321 12333321 2222222 3679999999999863
Q ss_pred Cc-cCCChhHHHHHhhhcceEE
Q 031411 135 SK-REAPFCLHETILLTVQVHL 155 (160)
Q Consensus 135 ~~-~~~~~~~~~~~~~~~~~~~ 155 (160)
.. .....+++++++.++++.+
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~~ 191 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIKI 191 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCeE
Confidence 22 2233467888888887654
No 194
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.52 E-value=9.4e-14 Score=111.46 Aligned_cols=131 Identities=16% Similarity=0.086 Sum_probs=89.0
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcC--------CC----------CCccccceeeeEEEEEEEECC-----EEEEEEEe
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDG--------SF----------TTSFITTIGIDFKIRTIELDG-----KRIKLQIW 69 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 69 (160)
++.-||+|+|..++|||||..+|+.. .. ..+..+..++......+.+.+ ..+.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 56789999999999999999999631 10 112222333333333344321 24789999
Q ss_pred cCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHH
Q 031411 70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETI 147 (160)
Q Consensus 70 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~ 147 (160)
|||||..|.......++-+|++|+|+|+...-..+...-|.+.... ++|.+++.||+|..........+++++.
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~a~~~~~~~ei~~~ 164 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQGANFLRVVEQIKKR 164 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTTCCHHHHHHHHHHH
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccCccHHHHHHHhhhh
Confidence 9999999999999999999999999999876544444444444433 8899999999999755555555555543
No 195
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.52 E-value=2.9e-14 Score=106.05 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=69.7
Q ss_pred EEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhc-CCCCc
Q 031411 54 IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQHA-SDNVN 122 (160)
Q Consensus 54 ~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~p 122 (160)
...+..++ +.+.+||++|++.+...|..++++++++|+|||+++ ..+++....|+..+.... ..++|
T Consensus 193 ~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p 270 (362)
T 1zcb_A 193 EYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS 270 (362)
T ss_dssp EEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred EEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC
Confidence 34555665 789999999999999999999999999999999999 678999999999887642 35799
Q ss_pred EEEEEeCCCCCCCc---------------cCCChhHHHHHh
Q 031411 123 KILVGNKADMDESK---------------REAPFCLHETIL 148 (160)
Q Consensus 123 i~vv~~K~Dl~~~~---------------~~~~~~~~~~~~ 148 (160)
+++++||+|+.++. ..+..+++.+++
T Consensus 271 iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~ 311 (362)
T 1zcb_A 271 IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL 311 (362)
T ss_dssp EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHH
Confidence 99999999985221 126678888876
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.49 E-value=2.4e-14 Score=106.36 Aligned_cols=118 Identities=17% Similarity=0.158 Sum_probs=68.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCcc------cccee--------------------------------------
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF------ITTIG-------------------------------------- 49 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~------~~~~~-------------------------------------- 49 (160)
...+|+|+|.+++|||||+|+|.+..+.... .++..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999987763111 11100
Q ss_pred -----eeE--EEEEEEECCEEEEEEEecCCCcc-------------cccccchhhccCCc-EEEEEEECCChhhHHHHHH
Q 031411 50 -----IDF--KIRTIELDGKRIKLQIWDTAGQE-------------RFRTITTAYYRGAM-GILLVYDVTDESSFNNIRN 108 (160)
Q Consensus 50 -----~~~--~~~~~~~~~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~ 108 (160)
+.. ....+... ....+.+|||||.. .+..+...++...+ +++++.+++....-.....
T Consensus 110 g~~~gi~~~~~~~~i~~~-~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEET-TCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred ccCCCcccCceEEEEecC-CCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 000 00000111 12468999999953 23344555665555 5555666654222112222
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 109 WIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 109 ~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
++ ....+.+.|+++|+||+|+.+.
T Consensus 189 i~---~~~~~~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 189 VA---KEVDPQGQRTIGVITKLDLMDE 212 (353)
T ss_dssp HH---HHHCTTCTTEEEEEECGGGSCT
T ss_pred HH---HHhCcCCCceEEEeccccccCc
Confidence 33 3334457899999999999643
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.48 E-value=1.1e-13 Score=103.03 Aligned_cols=84 Identities=19% Similarity=0.194 Sum_probs=53.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECC-------------------EEEEEEEecCCCccc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-------------------KRIKLQIWDTAGQER 76 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~D~~g~~~ 76 (160)
++|+++|.+|+|||||+++|.+........+..++..+.....+.+ ....+.+||+||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999997542211111111112222222221 124789999999765
Q ss_pred cc----ccc---hhhccCCcEEEEEEECCC
Q 031411 77 FR----TIT---TAYYRGAMGILLVYDVTD 99 (160)
Q Consensus 77 ~~----~~~---~~~~~~~~~~i~v~d~~~ 99 (160)
.. .+. ...++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 222 234789999999999985
No 198
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.48 E-value=3.8e-15 Score=108.43 Aligned_cols=111 Identities=17% Similarity=0.134 Sum_probs=85.9
Q ss_pred HHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccccchhhccCCcEEEEEEECCChh-hHHHHH
Q 031411 30 CLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-SFNNIR 107 (160)
Q Consensus 30 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~ 107 (160)
+++.++..+.|. ..+.++.+..+ ...+..++ ++.+||+ ++++..++..+++++|++++|||++++. +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~-~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRV-EYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEE-EEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEE-EEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 677888888887 77888888433 33322233 6899999 8899999999999999999999999987 789999
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHHHhhhcc
Q 031411 108 NWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHETILLTVQ 152 (160)
Q Consensus 108 ~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~~~~~~~ 152 (160)
.|+..+.. .++|+++++||+|+.+. .. .+++++++..++
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~-~~--v~~~~~~~~~~~ 144 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDE-DD--LRKVRELEEIYS 144 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCH-HH--HHHHHHHHHHHT
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCc-hh--HHHHHHHHHHHh
Confidence 99987755 37899999999999632 22 245666666654
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.42 E-value=2.1e-14 Score=113.92 Aligned_cols=125 Identities=17% Similarity=0.146 Sum_probs=85.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc--CCC----------------CCccccceeeeEEEEEEEECCEEEEEEEecCCCcccc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD--GSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 77 (160)
-||+|+|..++|||||..+|+. +.. +.+..+..++......+.+++ +.++++|||||..|
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~DF 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSST
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHHH
Confidence 4799999999999999999963 111 011122223333333344455 57899999999999
Q ss_pred cccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHHHH
Q 031411 78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLHET 146 (160)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~~~ 146 (160)
.......++-+|++|+|+|+...-.-+...-|...... ++|.+++.||+|..........+++++
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~----~lp~i~~INKmDr~~a~~~~~~~~i~~ 145 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM----GIPTIFFINKIDQNGIDLSTVYQDIKE 145 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH----TCSCEECCEECCSSSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc----CCCeEEEEeccccccCCHHHHHHHHHH
Confidence 99999999999999999999875443443334433332 788999999999875554444444433
No 200
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.39 E-value=2.5e-13 Score=101.77 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=52.6
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCE---------------EEEEEEecCCCcccc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERF 77 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~ 77 (160)
....+|+++|.+|+|||||+|+|.+........++.+.++....+.+.+. ...+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 44579999999999999999999987654444444455555555555442 125899999997654
Q ss_pred cc-------cchhhccCCcEEEEEEECCChhh
Q 031411 78 RT-------ITTAYYRGAMGILLVYDVTDESS 102 (160)
Q Consensus 78 ~~-------~~~~~~~~~~~~i~v~d~~~~~~ 102 (160)
.. .+...++++|++++|+|+++.++
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 32 34566789999999999986443
No 201
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.25 E-value=1.7e-12 Score=90.00 Aligned_cols=125 Identities=17% Similarity=0.121 Sum_probs=68.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeE--------------EEEEEEE----------------CCEEE
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF--------------KIRTIEL----------------DGKRI 64 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~~ 64 (160)
..+++++|.+|+|||||+++|...............++ ....+.. .....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 46899999999999999999986421111000000000 0011111 00124
Q ss_pred EEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCChhHH
Q 031411 65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAPFCLH 144 (160)
Q Consensus 65 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~~~~~ 144 (160)
.+.+||++|+... ...+....+.+++++|+..... ....+... .+.|+++++||+|+.+ ......++.
T Consensus 110 d~iiidt~G~~~~---~~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~-~~~~~~~~~ 177 (221)
T 2wsm_A 110 DLLLIENVGNLIC---PVDFDLGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAE-AVGADVEKM 177 (221)
T ss_dssp SEEEEEEEEBSSG---GGGCCCSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHH-HHTCCHHHH
T ss_pred CEEEEeCCCCCCC---CchhccccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCc-chhhHHHHH
Confidence 6788988884110 0111135688999999876432 11111111 1468899999999863 223455666
Q ss_pred HHHhhhc
Q 031411 145 ETILLTV 151 (160)
Q Consensus 145 ~~~~~~~ 151 (160)
.+++.+.
T Consensus 178 ~~~~~~~ 184 (221)
T 2wsm_A 178 KADAKLI 184 (221)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666543
No 202
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.23 E-value=1e-12 Score=97.68 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=41.1
Q ss_pred EEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+.+.+|||||... .....+..+|++++|+|....+..+.+..+ -...|+++++||+|+.
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGE 230 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGG
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCc
Confidence 5789999999432 233445889999999998765544332211 1135899999999986
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.21 E-value=8.7e-11 Score=94.36 Aligned_cols=118 Identities=16% Similarity=0.161 Sum_probs=70.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-Cccccceee------------------------------------------
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGI------------------------------------------ 50 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~------------------------------------------ 50 (160)
...+|+|+|..++|||||+|.|.+..+. ......+..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 4569999999999999999999987652 111100000
Q ss_pred --------eEEEEEEEECCEEEEEEEecCCCccc-------------ccccchhhc-cCCcEEEEEEECCChhhHHHHHH
Q 031411 51 --------DFKIRTIELDGKRIKLQIWDTAGQER-------------FRTITTAYY-RGAMGILLVYDVTDESSFNNIRN 108 (160)
Q Consensus 51 --------~~~~~~~~~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~ 108 (160)
+.....+...+ ..++.|+||||-.. +..+...++ ..+|++++|+|++....-.....
T Consensus 130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 00011111111 12578999999433 122233333 57899999999986432222222
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 031411 109 WIRNIEQHASDNVNKILVGNKADMDES 135 (160)
Q Consensus 109 ~~~~~~~~~~~~~pi~vv~~K~Dl~~~ 135 (160)
++..+ ...+.|+++|+||+|+.+.
T Consensus 209 ll~~L---~~~g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 209 IAKEV---DPQGQRTIGVITKLDLMDE 232 (772)
T ss_dssp HHHHH---CTTCSSEEEEEECTTSSCT
T ss_pred HHHHH---HhcCCCEEEEEeCcccCCc
Confidence 33333 3347899999999998643
No 204
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.17 E-value=5.5e-14 Score=97.90 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=24.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCC
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTT 42 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~ 42 (160)
...+|+++|.+|||||||++++....+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 35899999999999999999999765443
No 205
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.17 E-value=7.7e-11 Score=87.38 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=35.9
Q ss_pred EEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+.+.++||+|.... .......+|++++++|++.+...+.+.. .+ ...|.++++||+|+.
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGD 225 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGG
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCC
Confidence 46899999995321 2345678999999999976543222211 11 145789999999985
No 206
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.07 E-value=2.8e-10 Score=85.34 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=62.3
Q ss_pred CCCeeEEEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeEEEEEEEECCEE---------------EEEEEecCCCc
Q 031411 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQ 74 (160)
Q Consensus 11 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~ 74 (160)
......+++++|++|+|||||+|.|.+... .....++.+.++....+.+.+.+ ..+.+||+||.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 334457999999999999999999998665 44444444455555555555411 35889999995
Q ss_pred cc-------ccccchhhccCCcEEEEEEECCC
Q 031411 75 ER-------FRTITTAYYRGAMGILLVYDVTD 99 (160)
Q Consensus 75 ~~-------~~~~~~~~~~~~~~~i~v~d~~~ 99 (160)
.. ........++.+|++++++|+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 43 22233445688999999999864
No 207
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.02 E-value=2.4e-10 Score=81.90 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~ 38 (160)
.++++++|++|+|||||++.|.+.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 579999999999999999999874
No 208
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.00 E-value=1e-10 Score=86.49 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=37.4
Q ss_pred EEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+.+.+|||||...... .....+|++++|+|++..+.++.+.. .. .+.|.++++||+|+.
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGD 207 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTT
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCC
Confidence 5789999999654332 24689999999999975543221111 00 135789999999996
No 209
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.99 E-value=5.6e-10 Score=79.20 Aligned_cols=69 Identities=14% Similarity=-0.080 Sum_probs=40.1
Q ss_pred EEEEEecCCCcccccccch------hhccCCcEEEEEEECCChhhHHHHHHHHHH-HHHhcCCCCcEEEEEeCCCCC
Q 031411 64 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+.+.+|||||......... ..+.+ +++++++|+............... .......+.|+++++||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccc
Confidence 4789999999865432221 23456 888888887543222222111111 111111267999999999986
No 210
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.89 E-value=2.1e-10 Score=85.66 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=65.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC------CCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcccccc--------cc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------IT 81 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~ 81 (160)
.+++++|.+|+|||||+|+|.+. .......+..+.+ ......+. .+.++||||-..... ..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLES---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999975 2222223333322 23344443 378999999432221 11
Q ss_pred hhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 82 TAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 82 ~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
...+ ...+.++++++....--+..+. .+......+.|+++++||.|..
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~l~~l~~~~~~~~~v~~k~d~~ 287 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLA----RLDYIKGGRRSFVCYMANELTV 287 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCE
T ss_pred HHHhcccccCceEEEEcCCceEEECCEE----EEEEccCCCceEEEEecCCccc
Confidence 1222 5688999999884321111110 0222223468999999999975
No 211
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.88 E-value=4.1e-09 Score=76.65 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=59.7
Q ss_pred cccccccchhhccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccCCC-hhHHHHHhhhc
Q 031411 74 QERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKREAP-FCLHETILLTV 151 (160)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~~~~~~~-~~~~~~~~~~~ 151 (160)
++++..+...++.++|++++|+|++++. +++.+.+|+..+.. .++|+++++||+|+.+.. ++. .++..+++.+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~-~v~~~~~~~~~~~~~ 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEE-EKKELERWISIYRDA 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHH-HHHHHHHHHHHHHHT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCcc-ccHHHHHHHHHHHHC
Confidence 6777888888999999999999999886 88889999987654 478999999999996322 222 45566666655
Q ss_pred ceEE
Q 031411 152 QVHL 155 (160)
Q Consensus 152 ~~~~ 155 (160)
+..+
T Consensus 142 g~~~ 145 (302)
T 2yv5_A 142 GYDV 145 (302)
T ss_dssp TCEE
T ss_pred CCeE
Confidence 5433
No 212
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.88 E-value=3.7e-09 Score=79.95 Aligned_cols=60 Identities=23% Similarity=0.375 Sum_probs=34.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCcc----ccceeeeEEEEEEEECCEEEEEEEecCCCc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSF----ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 74 (160)
.++++|+|++|+|||||++.|.+..+.... .+..............+-...++++|++|-
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence 367999999999999999999986432111 111111111111121222236889998874
No 213
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.84 E-value=1.9e-09 Score=73.86 Aligned_cols=73 Identities=7% Similarity=-0.021 Sum_probs=45.4
Q ss_pred CCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHH---HHhc--CCCCcEEEEEeCC-CCCCCccCCChhHH
Q 031411 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI---EQHA--SDNVNKILVGNKA-DMDESKREAPFCLH 144 (160)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~---~~~~--~~~~pi~vv~~K~-Dl~~~~~~~~~~~~ 144 (160)
.+||.++..+|..++.++|++|+|+|++|.+.++ .++.+.++ .... ..+.|++|++||. |+++.....+..+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 3478899999999999999999999999986554 44444333 2222 2578999999995 78644443333333
No 214
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.82 E-value=2.9e-09 Score=78.52 Aligned_cols=59 Identities=19% Similarity=0.135 Sum_probs=35.3
Q ss_pred EEEEEecCCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
..+.++||+|..... ......+|++++++|....+..+.+..++ . ..+.+++.||+|+.
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDG 206 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTT
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhcc
Confidence 578999999964322 23457899999999986543222121111 1 12456777999974
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.79 E-value=1.2e-09 Score=81.54 Aligned_cols=109 Identities=14% Similarity=0.146 Sum_probs=62.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-------CccccceeeeEEEEEEEECCEEEEEEEecCCCcccccc----cch--
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFT-------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----ITT-- 82 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~~~-- 82 (160)
.+++++|.+|+|||||+|+|.+.... ....+..+ .....+...+ .+.++||||-..... +..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT--LDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCee--cceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHH
Confidence 47999999999999999999875211 11222222 2222333343 278999999532221 111
Q ss_pred --hh--ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 83 --AY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 83 --~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
.. ....+.++++++.....-+..+. .+......+.|+++++||.|..
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~ 286 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTI 286 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCE
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCcccc
Confidence 11 25678888888873211011110 0122223467999999999975
No 216
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.61 E-value=4.2e-08 Score=70.61 Aligned_cols=58 Identities=28% Similarity=0.354 Sum_probs=35.9
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEECCEEEEEEEecCCCcc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 75 (160)
+..++++++|.+|+|||||+|+|.+.... ....+..+.+. ..+..+. .+.+|||||-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee--EEEEeCC---CEEEEECcCcC
Confidence 45589999999999999999999976532 22222222221 1223333 57899999954
No 217
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.58 E-value=2.1e-08 Score=71.51 Aligned_cols=57 Identities=23% Similarity=0.344 Sum_probs=34.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCccc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 76 (160)
++++++|.+|+|||||+|+|.+...... .+..+.+.....+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 6999999999999999999998654321 11112111111222232 578999999653
No 218
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.53 E-value=2e-08 Score=71.98 Aligned_cols=71 Identities=4% Similarity=-0.060 Sum_probs=48.8
Q ss_pred CCCcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHH---HHH-Hhc-CCCCcEEEEEeC-CCCCCCccCCChh
Q 031411 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIR---NIE-QHA-SDNVNKILVGNK-ADMDESKREAPFC 142 (160)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~-~~~-~~~~pi~vv~~K-~Dl~~~~~~~~~~ 142 (160)
.+||+.+...|..++.++|++|+|+|++|.+.++ .++.+. .+. ... ..+.|++|++|| .|+++.....+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHH
Confidence 4678899999999999999999999999987655 333332 222 221 358999999996 5886444433333
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.47 E-value=1.3e-07 Score=73.04 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=61.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc------CCCC-Cc---cccc-----------eeeeEEEEEEE-------------E
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSD------GSFT-TS---FITT-----------IGIDFKIRTIE-------------L 59 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~------~~~~-~~---~~~~-----------~~~~~~~~~~~-------------~ 59 (160)
....|+++|.+|+||||+++.|.. .... .. +.+. .++........ .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999982 2110 00 0000 01111110000 0
Q ss_pred CCEEEEEEEecCCCcccccc-cchh---h--ccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCC
Q 031411 60 DGKRIKLQIWDTAGQERFRT-ITTA---Y--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK-ILVGNKADM 132 (160)
Q Consensus 60 ~~~~~~~~~~D~~g~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi-~vv~~K~Dl 132 (160)
....+.+.++||||...... +... . ...+|.+++|+|+........ ....+.. .+|+ .++.||.|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD----KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH----HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh----hcCceEEEEeCCcc
Confidence 00125789999999653221 1111 1 227899999999986432111 1222222 2464 788899998
Q ss_pred C
Q 031411 133 D 133 (160)
Q Consensus 133 ~ 133 (160)
.
T Consensus 253 ~ 253 (504)
T 2j37_W 253 H 253 (504)
T ss_dssp C
T ss_pred c
Confidence 6
No 220
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.27 E-value=4.4e-07 Score=71.37 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=38.5
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhcCCCCCcc-----ccceeeeEEEEEEEE-CCEEEEEEEecCCCcc
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF-----ITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQE 75 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~ 75 (160)
....++|+|+|.+|+|||||+|+|.+....-.. ..+.+ ........ ......+.++||||-.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~g--i~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKG--IWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCS--EEEEEEECSSSTTCEEEEEEECCBC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeE--EEEeecccccCCCceEEEecCCCcC
Confidence 345689999999999999999999986532111 11122 11111111 1112468999999954
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.18 E-value=5.1e-06 Score=62.77 Aligned_cols=109 Identities=12% Similarity=0.161 Sum_probs=57.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCccccce-eeeE--EEEEEEECCEEEEEEEecCCCcccccccchh-----hcc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTI-GIDF--KIRTIELDGKRIKLQIWDTAGQERFRTITTA-----YYR 86 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~-----~~~ 86 (160)
...++++|++|+|||||+|.|.+-..+..-.-.. +.+. ......... .-.+++||++|-......... .+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccc-cCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3589999999999999999999843221100000 0000 001111111 115789999984322111111 233
Q ss_pred CCcEEEEEEECC--ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 031411 87 GAMGILLVYDVT--DESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132 (160)
Q Consensus 87 ~~~~~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl 132 (160)
..+..++ ++.. ..... . ....+.. .+.|++++.||.|+
T Consensus 148 ~~~~~~~-lS~G~~~kqrv-~---la~aL~~---~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 148 EYDFFII-ISATRFKKNDI-D---IAKAISM---MKKEFYFVRTKVDS 187 (413)
T ss_dssp GCSEEEE-EESSCCCHHHH-H---HHHHHHH---TTCEEEEEECCHHH
T ss_pred ccCCeEE-eCCCCccHHHH-H---HHHHHHh---cCCCeEEEEecCcc
Confidence 4455555 7775 22211 1 2222222 26799999999995
No 222
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.06 E-value=5.7e-06 Score=65.50 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++|+|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999864
No 223
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.02 E-value=2.4e-07 Score=71.18 Aligned_cols=101 Identities=12% Similarity=0.130 Sum_probs=57.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEECCEEEEEEEecCCCcc--cccccc--------hh
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--RFRTIT--------TA 83 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--~~~~~~--------~~ 83 (160)
....|+++|.+|+||||+.++|........ ..+..+..........+......+||..|.. +....+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999976421110 1111100000000001111234579988863 222222 44
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHh
Q 031411 84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH 116 (160)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 116 (160)
++...++.++++|.++. +.+....|+..+...
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 55567888899999876 456666676666543
No 224
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.02 E-value=2.7e-06 Score=63.38 Aligned_cols=56 Identities=23% Similarity=0.401 Sum_probs=44.5
Q ss_pred CcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.++.|..+...+.+.++++++|+|++++. ..|...+.+... +.|+++|+||+|+.+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~ 110 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIP 110 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSC
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCC
Confidence 35678888888888999999999998753 456666666555 789999999999963
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.98 E-value=9.9e-06 Score=61.60 Aligned_cols=63 Identities=21% Similarity=0.161 Sum_probs=37.6
Q ss_pred EEEEEecCCCcccccc-cch-----hhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-c-EEEEEeCCCCC
Q 031411 64 IKLQIWDTAGQERFRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV-N-KILVGNKADMD 133 (160)
Q Consensus 64 ~~~~~~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-i~vv~~K~Dl~ 133 (160)
+.+.++||+|...... ... ..+..+|.+++|+|+..... .......+ .. .+ | ..++.||.|..
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~~-~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---KE-AVGEIGSIIVTKLDGS 251 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---HT-TSCSCEEEEEECSSSC
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---hh-cccCCeEEEEeCCCCc
Confidence 5689999999653211 111 12236899999999865431 11112222 22 35 5 78889999975
No 226
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.92 E-value=2.5e-05 Score=59.44 Aligned_cols=64 Identities=19% Similarity=0.118 Sum_probs=37.2
Q ss_pred EEEEEecCCCcccccccc------hhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 64 IKLQIWDTAGQERFRTIT------TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 64 ~~~~~~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+.+.++||+|........ .......|.+++|+|+........ ....+... -.+..+|.||.|..
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGS 252 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSC
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCc
Confidence 578899999953322111 012335789999999976432222 12223221 22556888999985
No 227
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.83 E-value=2.7e-06 Score=63.41 Aligned_cols=56 Identities=21% Similarity=0.320 Sum_probs=43.4
Q ss_pred CcccccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
.++.|..+.....++++++++|+|++++.+ .|...+.+... +.|+++|+||+|+.+
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~ 112 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLP 112 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSC
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCC
Confidence 467888888888899999999999998763 35555555544 789999999999963
No 228
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.70 E-value=2.8e-05 Score=59.25 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.3
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
....-|.|+|++++|||+|+|.|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3567799999999999999999985
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.68 E-value=8.7e-05 Score=56.39 Aligned_cols=64 Identities=19% Similarity=0.138 Sum_probs=36.8
Q ss_pred EEEEEecCCCccc--ccc-cch---h--hccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 031411 64 IKLQIWDTAGQER--FRT-ITT---A--YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMD 133 (160)
Q Consensus 64 ~~~~~~D~~g~~~--~~~-~~~---~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~ 133 (160)
+.+.++||+|... ... ... . .....+.+++|+|+........ ....+... -.+..++.||.|..
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDGT 251 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGGC
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEeccccc
Confidence 5678999999533 111 111 1 1224689999999976433222 22333322 23567888999975
No 230
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.68 E-value=2.4e-05 Score=52.36 Aligned_cols=22 Identities=32% Similarity=0.752 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998864
No 231
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.67 E-value=2.7e-05 Score=55.96 Aligned_cols=59 Identities=22% Similarity=0.123 Sum_probs=40.3
Q ss_pred EecCCCcc-cccccchhhccCCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 68 IWDTAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 68 ~~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
+-.+|||. +........+..+|+++.|+|+.++.+.. .+.+|+ .+.|.++++||+|+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKAD 64 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSC
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCC
Confidence 34578975 44455667789999999999999987654 343333 3789999999999973
No 232
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.56 E-value=4.4e-05 Score=50.99 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
-++++|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999863
No 233
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.54 E-value=0.00015 Score=52.47 Aligned_cols=80 Identities=14% Similarity=0.060 Sum_probs=44.9
Q ss_pred EEEEEecCCCccc--ccc-cch-----hhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 031411 64 IKLQIWDTAGQER--FRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KILVGNKADMDE 134 (160)
Q Consensus 64 ~~~~~~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-i~vv~~K~Dl~~ 134 (160)
+.+.++||||... ... +.. .....+|.+++++|+.... ........+.. ..| ..++.||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5689999999765 221 111 1244689999999986432 11122222222 345 678889999752
Q ss_pred CccCCChhHHHHHhhhcceEE
Q 031411 135 SKREAPFCLHETILLTVQVHL 155 (160)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~ 155 (160)
. ...+..+....+...
T Consensus 254 ~-----~g~~~~~~~~~~~pi 269 (297)
T 1j8m_F 254 K-----GGGALSAVAATGATI 269 (297)
T ss_dssp T-----HHHHHHHHHTTTCCE
T ss_pred c-----hHHHHHHHHHHCcCE
Confidence 1 223445555555443
No 234
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.51 E-value=5.5e-05 Score=51.39 Aligned_cols=21 Identities=43% Similarity=0.638 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
.++|+|++|+|||||++.|.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999975
No 235
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.45 E-value=7.2e-05 Score=50.65 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
-++++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 236
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.44 E-value=7.1e-05 Score=50.21 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 031411 18 LLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~ 37 (160)
++++|++||||||+++.|.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999985
No 237
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.43 E-value=9.4e-05 Score=50.32 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
--++|+|++|+|||||++.|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999999853
No 238
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.43 E-value=8e-05 Score=49.88 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
-.++++|++||||||+++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999999875
No 239
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.43 E-value=7.7e-05 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
--++++|++|||||||++.+.+-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999864
No 240
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.39 E-value=0.00011 Score=51.15 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=21.7
Q ss_pred CCCCCeeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 9 RADYDYLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 9 ~~~~~~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
........+|+|+|.+||||||+.+.|..
T Consensus 10 ~~~~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 10 VPESPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp ----CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33334446899999999999999999864
No 241
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.39 E-value=8.3e-05 Score=49.27 Aligned_cols=19 Identities=42% Similarity=0.653 Sum_probs=17.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 031411 17 KLLLIGDSGVGKSCLLLRF 35 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l 35 (160)
-++++|++|||||||++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999954
No 242
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.37 E-value=0.0001 Score=51.02 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
-++|+|++|||||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999998743
No 243
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.36 E-value=0.00018 Score=48.70 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=21.7
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
......|+|.|.+||||||+.+.|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33446899999999999999998864
No 244
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.36 E-value=0.0001 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.++|+|++|+|||||++.|.+-
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999863
No 245
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.33 E-value=0.00018 Score=47.53 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..++++|++||||||+++.|..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 246
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.32 E-value=0.00018 Score=48.87 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~ 37 (160)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 247
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.31 E-value=0.00014 Score=49.60 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
....++|+|++|||||||++.|.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998865
No 248
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.31 E-value=0.00013 Score=51.02 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999998754
No 249
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.31 E-value=0.00013 Score=49.79 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
-|+++|++||||||+++.|...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 250
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.28 E-value=0.00015 Score=47.52 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999998744
No 251
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.26 E-value=0.00018 Score=48.55 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~ 38 (160)
|+|+||+|+|||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999753
No 252
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.25 E-value=0.00018 Score=47.12 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCHHHHHHHH
Q 031411 16 IKLLLIGDSGVGKSCLLLRF 35 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l 35 (160)
.-|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 253
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.25 E-value=0.00016 Score=50.18 Aligned_cols=23 Identities=39% Similarity=0.420 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 254
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.24 E-value=0.00017 Score=48.24 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
-++++|++|+||||+++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 255
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.24 E-value=0.00017 Score=48.97 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
.-|+|+|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999753
No 256
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.24 E-value=0.00017 Score=48.78 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~ 39 (160)
..++++|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999998654
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.23 E-value=0.00019 Score=47.26 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.|+++|++||||||+++.|...
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998763
No 258
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.23 E-value=0.00019 Score=50.28 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 259
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.20 E-value=0.00022 Score=47.06 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 260
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.20 E-value=0.0002 Score=51.27 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998744
No 261
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.19 E-value=0.00024 Score=49.71 Aligned_cols=21 Identities=24% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHh
Q 031411 16 IKLLLIGDSGVGKSCLLLRFS 36 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~ 36 (160)
..|+|+|++||||||+++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 262
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.19 E-value=0.0002 Score=50.83 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 263
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.19 E-value=0.00021 Score=49.24 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 264
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.19 E-value=0.00021 Score=48.41 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
-.++|+|++||||||+++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 265
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.19 E-value=0.00024 Score=46.58 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 266
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.18 E-value=0.00025 Score=48.24 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..++++|++|||||||++.|.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 267
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.18 E-value=0.00024 Score=49.68 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 268
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.18 E-value=0.00021 Score=50.55 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 269
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.17 E-value=0.0002 Score=48.38 Aligned_cols=21 Identities=38% Similarity=0.716 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
.++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 588999999999999998876
No 270
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.17 E-value=0.00022 Score=50.75 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999998743
No 271
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.17 E-value=0.00026 Score=52.51 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~ 40 (160)
.++++|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999997543
No 272
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.16 E-value=0.00024 Score=48.52 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
No 273
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.15 E-value=0.00027 Score=49.61 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 274
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.14 E-value=0.00027 Score=49.76 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 275
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.14 E-value=0.00024 Score=50.38 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
-.++++|++|||||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999999886
No 276
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.14 E-value=0.00026 Score=48.40 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
No 277
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.14 E-value=0.00025 Score=50.39 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 57899999999999999998753
No 278
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.13 E-value=0.00029 Score=48.99 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 279
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.13 E-value=0.00025 Score=49.64 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 280
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.13 E-value=0.00026 Score=50.12 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 281
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.12 E-value=0.00026 Score=49.86 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998753
No 282
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.12 E-value=0.00027 Score=47.87 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+|+|++||||||+++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 283
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.12 E-value=0.00028 Score=49.68 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.++++|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999985
No 284
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.11 E-value=0.00029 Score=50.14 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.++++|++|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999985
No 285
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.10 E-value=0.00025 Score=48.65 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.++++|++|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 286
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.10 E-value=0.00031 Score=50.31 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998753
No 287
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.10 E-value=0.00096 Score=42.70 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
..|++.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 36999999999999999988764
No 288
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.10 E-value=0.00031 Score=49.76 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.++++|++|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999874
No 289
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.09 E-value=0.00034 Score=47.30 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 290
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.09 E-value=0.00031 Score=47.56 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
.+|+++|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 291
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.09 E-value=0.00028 Score=46.89 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988763
No 292
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.09 E-value=0.00034 Score=47.88 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
+.|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 293
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.07 E-value=0.00034 Score=49.90 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++|+|++|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 294
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.07 E-value=0.00038 Score=48.23 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.1
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcC
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~ 38 (160)
....-|+|.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34468999999999999999998764
No 295
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.06 E-value=0.0004 Score=46.32 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+|.|.+||||||+++.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998865
No 296
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.06 E-value=0.00032 Score=49.54 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 297
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.06 E-value=0.00032 Score=49.91 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998753
No 298
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.06 E-value=0.00036 Score=47.01 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998875
No 299
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.06 E-value=0.00034 Score=50.74 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
.++|+|++|+|||||++.|.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 789999999999999999875
No 300
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.06 E-value=0.00035 Score=48.57 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 031411 17 KLLLIGDSGVGKSCLLLRFS 36 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~ 36 (160)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58899999999999999887
No 301
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.05 E-value=0.00038 Score=45.97 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
-|++.|++||||||+.+.|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 302
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.04 E-value=0.00048 Score=46.53 Aligned_cols=23 Identities=26% Similarity=0.668 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~ 37 (160)
.+.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 303
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.04 E-value=0.00047 Score=46.75 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 304
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.04 E-value=0.00021 Score=49.47 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=15.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh-cC
Q 031411 17 KLLLIGDSGVGKSCLLLRFS-DG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~-~~ 38 (160)
-++|+|++||||||+++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998 53
No 305
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.04 E-value=0.00038 Score=46.36 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
.-++++|++|+|||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 306
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.03 E-value=0.00046 Score=46.47 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~ 38 (160)
....|+|.|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3468999999999999999998764
No 307
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.03 E-value=0.00054 Score=45.53 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+++|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 308
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.03 E-value=0.00058 Score=46.33 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=21.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~ 38 (160)
....|+++|++||||||+++.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999874
No 309
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.03 E-value=0.00046 Score=46.10 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
.+|+++|.+||||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999988754
No 310
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.03 E-value=0.00042 Score=47.59 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|.++|++||||||+++.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 311
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.02 E-value=0.00064 Score=46.90 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 031411 18 LLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~ 37 (160)
|+|+|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999998864
No 312
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.02 E-value=0.00038 Score=47.11 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+++|++||||||+++.|.+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988865
No 313
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.01 E-value=0.00043 Score=49.19 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 314
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.01 E-value=0.00037 Score=47.86 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
-++++|++|+|||||++.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 315
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.00 E-value=0.00042 Score=47.36 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 316
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.00 E-value=0.00055 Score=45.72 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 317
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.00 E-value=0.00047 Score=49.88 Aligned_cols=24 Identities=42% Similarity=0.420 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGSF 40 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~~ 40 (160)
.++++|++|+|||||++.|.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999987543
No 318
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.99 E-value=0.00051 Score=45.65 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 319
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.98 E-value=0.00057 Score=49.73 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=21.6
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
....-++|+|++|||||||++.|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456899999999999999998875
No 320
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.97 E-value=0.00051 Score=45.72 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 321
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.97 E-value=0.00045 Score=50.01 Aligned_cols=22 Identities=50% Similarity=0.792 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||+|.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 67999999999999999998 43
No 322
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.97 E-value=0.00014 Score=52.91 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 78999999999999999998753
No 323
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.96 E-value=0.00045 Score=47.39 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~ 37 (160)
.+.|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 324
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.96 E-value=0.00063 Score=47.59 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
...+|+|.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999964
No 325
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.96 E-value=0.00039 Score=51.58 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~ 38 (160)
.-+++|+|++|+|||||++.|.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 326
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.96 E-value=0.00016 Score=51.33 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=36.1
Q ss_pred CCCccc-ccccchhhccCCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 71 TAGQER-FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 71 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
+|||.. ........+.++|+++.|+|+.++.+..... +. .. +.|.++++||+|+.+
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll--~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-FS--RKETIILLNKVDIAD 60 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-CT--TSEEEEEEECGGGSC
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-hc--CCCcEEEEECccCCC
Confidence 678753 3335566789999999999999876653210 11 11 679999999999973
No 327
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.93 E-value=0.00064 Score=46.01 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+|.|.+||||||+++.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 328
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.93 E-value=0.00058 Score=46.83 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998864
No 329
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.92 E-value=0.00059 Score=44.57 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999875
No 330
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.91 E-value=0.00053 Score=49.39 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999998753
No 331
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.91 E-value=0.00065 Score=47.49 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~ 37 (160)
...|.|+|+.|||||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998876
No 332
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.91 E-value=0.0005 Score=50.98 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
.++|+|++|||||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999876
No 333
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.91 E-value=0.00065 Score=50.38 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999854
No 334
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.90 E-value=0.00076 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|++.|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 335
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.90 E-value=0.00059 Score=47.04 Aligned_cols=22 Identities=23% Similarity=0.579 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+|+|++||||||+++.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 336
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.89 E-value=0.00027 Score=46.99 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.+.|+|++|||||||++.|.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 337
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.89 E-value=0.00057 Score=50.61 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
-++++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 338
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.88 E-value=0.00053 Score=45.29 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 339
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.88 E-value=0.00057 Score=48.78 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 031411 18 LLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~ 37 (160)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999986
No 340
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.88 E-value=0.00038 Score=50.55 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.++++|++|+|||||++.|.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999998874
No 341
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.87 E-value=0.00061 Score=50.62 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
-+.++|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999998754
No 342
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.87 E-value=0.00086 Score=48.99 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=21.2
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
...+-++++|++|||||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988853
No 343
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.87 E-value=0.00062 Score=50.86 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999998754
No 344
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.86 E-value=0.00061 Score=50.53 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999998754
No 345
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.86 E-value=0.00063 Score=50.51 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998754
No 346
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.86 E-value=0.00071 Score=46.64 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 347
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.85 E-value=0.00088 Score=48.12 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~ 37 (160)
..-|+++|++||||||+++.|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999964
No 348
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.84 E-value=0.00099 Score=47.96 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.2
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
.....|+|+|++|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988764
No 349
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.83 E-value=0.00068 Score=47.75 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
-|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 350
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.83 E-value=0.0012 Score=47.15 Aligned_cols=25 Identities=40% Similarity=0.425 Sum_probs=21.5
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
...+.|+|.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998863
No 351
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.83 E-value=0.00049 Score=44.58 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999874
No 352
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.83 E-value=0.00069 Score=47.47 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~ 38 (160)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999863
No 353
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.82 E-value=0.00081 Score=44.38 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
-.+++.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 354
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.82 E-value=0.00067 Score=49.20 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
-.++++|++||||||+++.+.+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3788999999999999999874
No 355
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.82 E-value=0.0007 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999998754
No 356
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.82 E-value=0.00072 Score=50.41 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
-++++|++|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999998743
No 357
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.81 E-value=0.00059 Score=46.88 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 358
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.81 E-value=0.0007 Score=49.05 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
--++++|++||||||++..+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999998875
No 359
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.81 E-value=0.00086 Score=49.81 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=21.4
Q ss_pred CCeeEEEEEEcCCCCCHHHHHHHHh
Q 031411 12 YDYLIKLLLIGDSGVGKSCLLLRFS 36 (160)
Q Consensus 12 ~~~~~~i~v~G~~~~GKstli~~l~ 36 (160)
..+..||+++|.++||||||++.+.
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHHH
Confidence 3557999999999999999998764
No 360
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.81 E-value=0.0012 Score=43.89 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~ 37 (160)
...|+++|.+||||||+++.|..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998865
No 361
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.81 E-value=0.00098 Score=48.31 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~ 37 (160)
...|+|+|++|||||||++.|.+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998875
No 362
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.80 E-value=0.001 Score=45.01 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=20.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
....++++|++||||||+++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 363
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.80 E-value=0.00082 Score=45.30 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
..|+|.|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 364
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.79 E-value=0.00077 Score=50.25 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
-.++++|++||||||+++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999986
No 365
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.79 E-value=0.00079 Score=44.58 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+++|++|+||||+.+.|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4699999999999999999874
No 366
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.78 E-value=0.0007 Score=50.24 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~ 39 (160)
-.++++|++|+|||||++.+.+-.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 379999999999999999998743
No 367
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.78 E-value=0.0007 Score=49.64 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998743
No 368
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.78 E-value=0.00084 Score=44.78 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 369
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.76 E-value=0.00087 Score=44.83 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|++.|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 370
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.76 E-value=0.00085 Score=44.91 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
-|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 371
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.75 E-value=0.0011 Score=46.83 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+++|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 372
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.74 E-value=0.00084 Score=49.20 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~ 37 (160)
.--++++|++|+||||+++.|.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999875
No 373
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.74 E-value=0.00031 Score=47.80 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 374
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.73 E-value=0.001 Score=44.05 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..+.++|.+|+|||||+.+|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 375
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.73 E-value=0.00057 Score=50.52 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
-++++|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 57899999999999999998754
No 376
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.73 E-value=0.0014 Score=43.59 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 377
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.72 E-value=0.00083 Score=50.85 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.++|+|++||||||+++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999863
No 378
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.71 E-value=0.00089 Score=50.22 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.++++|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999999863
No 379
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.71 E-value=0.0011 Score=44.52 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|++.|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 380
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.70 E-value=0.0009 Score=49.01 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999863
No 381
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.70 E-value=0.00089 Score=51.98 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++|+|++||||||+++.+.+--
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 59999999999999999998743
No 382
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.69 E-value=0.0011 Score=43.38 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998864
No 383
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.68 E-value=0.00091 Score=47.01 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~ 37 (160)
...|+++|++||||||+.+.|..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 384
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.68 E-value=0.0012 Score=44.88 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+|.|.+||||||+++.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 385
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.67 E-value=0.001 Score=47.30 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~ 38 (160)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999864
No 386
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.67 E-value=0.0011 Score=43.90 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
-.+|+|++|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998864
No 387
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.66 E-value=0.0013 Score=46.30 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHh
Q 031411 16 IKLLLIGDSGVGKSCLLLRFS 36 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~ 36 (160)
..|.|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
No 388
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.66 E-value=0.0011 Score=45.43 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998874
No 389
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.65 E-value=0.00078 Score=47.56 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=21.8
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhcC
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~~ 38 (160)
.+...|+|.|.+||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999988754
No 390
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.65 E-value=0.0012 Score=43.81 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998864
No 391
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.64 E-value=0.0015 Score=44.65 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
+.|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999875
No 392
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.62 E-value=0.0014 Score=42.81 Aligned_cols=22 Identities=41% Similarity=0.469 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 393
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.61 E-value=0.00089 Score=44.29 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=15.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 394
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.61 E-value=0.0015 Score=43.28 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+++|.+||||||+++.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998876
No 395
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.61 E-value=0.0012 Score=49.02 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
--++++|++||||||++..|.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4789999999999999998875
No 396
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.60 E-value=0.00056 Score=50.63 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
-++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998754
No 397
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.59 E-value=0.0038 Score=45.32 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=37.3
Q ss_pred cccchhhccCCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 78 RTITTAYYRGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
+.+.+..+.++|.+++|+|+.+|.. ...+.+++.... ..++|.++++||+||.+
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~ 131 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIE 131 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCC
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCc
Confidence 3444556889999999999987643 334444443222 24788999999999963
No 398
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.58 E-value=0.0016 Score=45.70 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
..+.|+|.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999998865
No 399
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.57 E-value=0.0012 Score=50.85 Aligned_cols=22 Identities=27% Similarity=0.606 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
--++|+|++|||||||++.|.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 4689999999999999998864
No 400
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.57 E-value=0.001 Score=43.76 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
-.+++.|++|+|||++++.+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988875
No 401
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.57 E-value=0.0013 Score=46.07 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..++++|++|+|||++++.+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3599999999999999999976
No 402
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.57 E-value=0.0015 Score=44.89 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
-.+++.|++|+|||++++.+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 403
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.56 E-value=0.0014 Score=48.44 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
++.++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 404
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.55 E-value=0.0057 Score=46.68 Aligned_cols=63 Identities=25% Similarity=0.301 Sum_probs=39.1
Q ss_pred CeeEEEEEEcCCCCCHHHHHHHHhc------------------CCCC---CccccceeeeEEEEEE--EE-CCEEEEEEE
Q 031411 13 DYLIKLLLIGDSGVGKSCLLLRFSD------------------GSFT---TSFITTIGIDFKIRTI--EL-DGKRIKLQI 68 (160)
Q Consensus 13 ~~~~~i~v~G~~~~GKstli~~l~~------------------~~~~---~~~~~~~~~~~~~~~~--~~-~~~~~~~~~ 68 (160)
....-|.|+|+.++|||+|+|.|++ ..|. .....|.|+-.+...+ .. ++..+.+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 3567778999999999999996642 1222 1122344432222222 22 566788999
Q ss_pred ecCCCcc
Q 031411 69 WDTAGQE 75 (160)
Q Consensus 69 ~D~~g~~ 75 (160)
.||.|..
T Consensus 145 lDTEG~~ 151 (457)
T 4ido_A 145 MDTQGTF 151 (457)
T ss_dssp EEECCBT
T ss_pred EeccCCC
Confidence 9999953
No 405
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0013 Score=50.41 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++|+|+.|||||||++.|.+-.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 68999999999999999998743
No 406
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.51 E-value=0.0016 Score=42.06 Aligned_cols=19 Identities=47% Similarity=0.635 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 031411 18 LLLIGDSGVGKSCLLLRFS 36 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~ 36 (160)
.+|+|+.|+||||+++.+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999875
No 407
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.51 E-value=0.0014 Score=46.99 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
-++|+|++|+|||||+..+.+
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 578999999999999998875
No 408
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.49 E-value=0.0018 Score=43.58 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.49 E-value=0.0016 Score=44.31 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+++|.+|+||||+++.|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998865
No 410
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.47 E-value=0.0012 Score=48.14 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
--++|+|+.|+|||||++.+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 45789999999999999999965
No 411
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.45 E-value=0.0018 Score=44.06 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 412
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.45 E-value=0.0028 Score=43.90 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
...-|++.|++||||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 413
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.43 E-value=0.0019 Score=44.66 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999999873
No 414
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.42 E-value=0.0015 Score=44.74 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
.+++.|++|+|||+++..+.+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988875
No 415
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.42 E-value=0.002 Score=46.26 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 416
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.41 E-value=0.0027 Score=42.89 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~ 38 (160)
..+.|++.|..||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999988753
No 417
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.41 E-value=0.0021 Score=44.81 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~ 37 (160)
.+.|.+.|++||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998863
No 418
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.40 E-value=0.0027 Score=49.56 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998743
No 419
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.39 E-value=0.0017 Score=45.75 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
-.|+++|++|+||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 420
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.37 E-value=0.0023 Score=40.99 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~ 39 (160)
..|++.|++|+|||++++.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 469999999999999999998643
No 421
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.36 E-value=0.0025 Score=49.77 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
-++++|++|+|||||++.|.+-.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999998743
No 422
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.34 E-value=0.0022 Score=43.77 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
No 423
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.33 E-value=0.0022 Score=48.81 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
+++++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 78999999999999999998854
No 424
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.32 E-value=0.0023 Score=43.12 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999988753
No 425
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.32 E-value=0.0022 Score=45.89 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
-.+++.|++|+|||++++.+...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
No 426
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.29 E-value=0.0023 Score=49.28 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
.++++|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998875
No 427
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.29 E-value=0.0026 Score=45.17 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
-.+++.|++|+|||++++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 36999999999999999999763
No 428
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.28 E-value=0.0025 Score=44.54 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..+++.|++|+|||++++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 429
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.27 E-value=0.004 Score=47.04 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
.-|+++|.+||||||+.+.|..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999875
No 430
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.27 E-value=0.0024 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999998743
No 431
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.27 E-value=0.0026 Score=47.23 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 031411 18 LLLIGDSGVGKSCLLLRFS 36 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~ 36 (160)
.+|+|++|+||||+++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4589999999999999886
No 432
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.26 E-value=0.0031 Score=45.27 Aligned_cols=23 Identities=22% Similarity=0.593 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~ 37 (160)
...+++.|++|+|||++++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999986654
No 433
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.0033 Score=49.83 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.|.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999998743
No 434
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.24 E-value=0.0025 Score=47.55 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999999885
No 435
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.23 E-value=0.0026 Score=45.85 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
-.+++.|++|+|||++++.+.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 36899999999999999999863
No 436
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.23 E-value=0.0027 Score=49.98 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 437
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.22 E-value=0.0026 Score=45.71 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
.-+++.|++|+|||+|++.+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46788899999999999998763
No 438
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.19 E-value=0.0047 Score=43.64 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~ 38 (160)
....+++.|++|+|||+++..+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4468999999999999999998763
No 439
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.17 E-value=0.0035 Score=43.47 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
....|+++|++||||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998874
No 440
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.17 E-value=0.0029 Score=45.90 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.+++.|++|+|||+|++.+.+.
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999998763
No 441
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.16 E-value=0.0029 Score=45.00 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999988874
No 442
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.13 E-value=0.0036 Score=43.49 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~ 37 (160)
..+++.++|++||||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357999999999999999998864
No 443
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.13 E-value=0.0043 Score=49.15 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.|.+-.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999998743
No 444
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.11 E-value=0.0049 Score=48.14 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.+.++|+.|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999754
No 445
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.11 E-value=0.0025 Score=50.35 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68899999999999999998743
No 446
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.10 E-value=0.0053 Score=44.04 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988763
No 447
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.09 E-value=0.0043 Score=48.45 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.|.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 448
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.07 E-value=0.0042 Score=41.80 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
.|.+.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 449
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.07 E-value=0.0034 Score=45.28 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
-.++++|++|+||||++..|..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988863
No 450
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.06 E-value=0.0053 Score=48.67 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.|.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 451
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.06 E-value=0.0029 Score=50.06 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 78999999999999999998743
No 452
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.06 E-value=0.0037 Score=44.69 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..+++.|++|+|||++++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998875
No 453
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.05 E-value=0.0029 Score=46.34 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 031411 18 LLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~ 37 (160)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 454
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.04 E-value=0.0035 Score=46.06 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
-.++|.|++|+|||||++.+.+
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 455
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.03 E-value=0.004 Score=43.01 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 031411 17 KLLLIGDSGVGKSCLLLRFS 36 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~ 36 (160)
-++++|++|+|||||+..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999987665
No 456
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.02 E-value=0.0044 Score=42.17 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.-|+|+|++|+|||+|+..|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998653
No 457
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.99 E-value=0.0024 Score=50.31 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.+.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68899999999999999888743
No 458
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.004 Score=47.24 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
--+++.||||+|||+|++.+.+
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999986
No 459
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.004 Score=47.30 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
--|++.||||+|||+|++.+.+
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 460
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.99 E-value=0.0039 Score=45.57 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
++++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 461
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.97 E-value=0.0041 Score=45.33 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
-.+++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 47999999999999999999864
No 462
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.96 E-value=0.0045 Score=45.52 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999999875
No 463
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.96 E-value=0.0047 Score=45.57 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.++|.|++|+|||++++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998864
No 464
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.95 E-value=0.0047 Score=45.10 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|+|+|++||||||+...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998875
No 465
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.94 E-value=0.0046 Score=44.86 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
--++++|++|+||||++..|..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 4688999999999999988864
No 466
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.0045 Score=47.07 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
--|++.||||+|||+|++.+.+
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4799999999999999999986
No 467
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.91 E-value=0.0054 Score=41.64 Aligned_cols=20 Identities=45% Similarity=0.569 Sum_probs=17.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 031411 17 KLLLIGDSGVGKSCLLLRFS 36 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~ 36 (160)
-.+|+|+.|+||||+++.+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 35788999999999998775
No 468
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.0063 Score=48.26 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDGSF 40 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~~~ 40 (160)
++++|++|+|||||++.|.+-..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 68999999999999999987543
No 469
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.90 E-value=0.0033 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988874
No 470
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.87 E-value=0.0069 Score=43.98 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~ 37 (160)
...+++.|++|+|||++++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999999975
No 471
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.85 E-value=0.022 Score=41.19 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~ 38 (160)
+++.|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455666999999999999754
No 472
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.84 E-value=0.0049 Score=45.50 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
--+.|+|++|+|||||+..+...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999998864
No 473
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.83 E-value=0.0051 Score=44.83 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988764
No 474
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.82 E-value=0.0061 Score=40.75 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031411 18 LLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~~~ 38 (160)
++|+|.++||||+|...+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999854
No 475
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.81 E-value=0.0078 Score=44.53 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~ 37 (160)
..+|+++|++|+||||+...|..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999987754
No 476
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.0055 Score=46.10 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
--+++.||||+|||.|++.+.+
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 477
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.79 E-value=0.0061 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~~ 39 (160)
.++++|++|+|||||++.|.++.
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998654
No 478
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.77 E-value=0.0063 Score=44.32 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
-|+|+|++|||||+|...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5789999999999999999764
No 479
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.77 E-value=0.0048 Score=45.41 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
-.+++.|++|+|||++++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998763
No 480
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.77 E-value=0.0065 Score=44.62 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
-|+|+|++|||||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 481
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.76 E-value=0.0024 Score=44.97 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
.+++.|++|+|||++++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999999875
No 482
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.74 E-value=0.0061 Score=44.82 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998875
No 483
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.72 E-value=0.0094 Score=43.31 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
.-|+|+|++|||||+|...|...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 35789999999999999999753
No 484
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.71 E-value=0.007 Score=43.85 Aligned_cols=22 Identities=45% Similarity=0.674 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
-.+++.|++|+|||+|+..+..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999988875
No 485
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.69 E-value=0.0058 Score=47.76 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.++++|++|+|||||++.+.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999988753
No 486
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.0096 Score=41.29 Aligned_cols=26 Identities=19% Similarity=-0.019 Sum_probs=19.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCC
Q 031411 14 YLIKLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 14 ~~~~i~v~G~~~~GKstli~~l~~~~ 39 (160)
+++=|++-|+++.|||+|++++....
T Consensus 28 nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 28 NKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred CceEEEecCcccccHHHHHHHHhccc
Confidence 33444444999999999999999863
No 487
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.68 E-value=0.0081 Score=41.68 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
..|++.|..||||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 488
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.67 E-value=0.0062 Score=46.33 Aligned_cols=21 Identities=33% Similarity=0.657 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031411 17 KLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~ 37 (160)
.+++.|++|+|||+|++.+.+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998876
No 489
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.66 E-value=0.0066 Score=44.84 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
-.+++.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999998863
No 490
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.66 E-value=0.007 Score=42.53 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDGS 39 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~~ 39 (160)
..+++.|++|+|||++++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 469999999999999999998643
No 491
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.66 E-value=0.0063 Score=46.66 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
-+++++|++|+|||++++.+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988864
No 492
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.65 E-value=0.0067 Score=44.12 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
..+++.|++|+|||++++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999999653
No 493
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.64 E-value=0.0069 Score=44.70 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~ 38 (160)
...+++.|++|+|||++++.+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998763
No 494
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.62 E-value=0.0076 Score=41.33 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSD 37 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~ 37 (160)
.-|++.|.+|+||||+++.|..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999998864
No 495
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.61 E-value=0.0072 Score=44.81 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
..+++.|++|+|||++++.+...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998763
No 496
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.58 E-value=0.007 Score=44.64 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031411 17 KLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 17 ~i~v~G~~~~GKstli~~l~~~ 38 (160)
.+++.|++|+|||++++.+...
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988763
No 497
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.58 E-value=0.007 Score=47.06 Aligned_cols=19 Identities=37% Similarity=0.649 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 031411 18 LLLIGDSGVGKSCLLLRFS 36 (160)
Q Consensus 18 i~v~G~~~~GKstli~~l~ 36 (160)
++++|++|+|||||++.++
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 498
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.57 E-value=0.022 Score=42.25 Aligned_cols=46 Identities=24% Similarity=0.261 Sum_probs=30.3
Q ss_pred ccCCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 031411 85 YRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKILVGNKADMDE 134 (160)
Q Consensus 85 ~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~pi~vv~~K~Dl~~ 134 (160)
..++|.+++|... .|. +...+.+++..... .++|.++++||+||.+
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~ 174 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLD 174 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCC
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCC
Confidence 5789999988665 453 33444444433322 2678899999999963
No 499
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.56 E-value=0.0047 Score=48.41 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 031411 15 LIKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 15 ~~~i~v~G~~~~GKstli~~l~~~ 38 (160)
...++|+|++||||||+++.|.+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 357999999999999999988753
No 500
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.56 E-value=0.0084 Score=44.26 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031411 16 IKLLLIGDSGVGKSCLLLRFSDG 38 (160)
Q Consensus 16 ~~i~v~G~~~~GKstli~~l~~~ 38 (160)
..+++.|++|+|||++++.+...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
Done!