BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031413
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DVV|A Chain A, Solution Structure Of The Quintuple Mutant Of Cytochrome
C- 551 From Pseudomonas Aeruginosa
Length = 82
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 79 ASRSYETESQGTAYKDMSSMYQDQRVQPCHLSSSIYYGGQDVYS--PRPPNS 128
A + +T+ G AYKD+++ Y Q +L+ I G Q V+ P PPN+
Sbjct: 14 ACHAIDTKMVGPAYKDVAAKYAGQAGAEAYLAQRIKNGSQGVWGPIPMPPNA 65
>pdb|2PAC|A Chain A, Solution Structure Of Fe(ii) Cytochrome C551 From
Pseudomonas Aeruginosa As Determined By Two-dimensional
1h Nmr
pdb|351C|A Chain A, Structure Of Cytochrome C551 From P. Aeruginosa Refined At
1.6 Angstroms Resolution And Comparison Of The Two Redox
Forms
pdb|451C|A Chain A, Structure Of Cytochrome C551 From P. Aeruginosa Refined At
1.6 Angstroms Resolution And Comparison Of The Two Redox
Forms
Length = 82
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 79 ASRSYETESQGTAYKDMSSMYQDQRVQPCHLSSSIYYGGQDVYS--PRPPNS 128
A + +T+ G AYKD+++ + Q L+ I G Q V+ P PPN+
Sbjct: 14 ACHAIDTKMVGPAYKDVAAKFAGQAGAEAELAQRIKNGSQGVWGPIPMPPNA 65
>pdb|2EXV|A Chain A, Crystal Structure Of The F7a Mutant Of The Cytochrome C551
From Pseudomonas Aeruginosa
pdb|2EXV|C Chain C, Crystal Structure Of The F7a Mutant Of The Cytochrome C551
From Pseudomonas Aeruginosa
Length = 82
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 79 ASRSYETESQGTAYKDMSSMYQDQRVQPCHLSSSIYYGGQDVYS--PRPPNS 128
A + +T+ G AYKD+++ + Q L+ I G Q V+ P PPN+
Sbjct: 14 ACHAIDTKMVGPAYKDVAAKFAGQAGAEAELAQRIKNGSQGVWGPIPMPPNA 65
>pdb|1A56|A Chain A, Primary Sequence And Solution Conformation Of
Ferricytochrome C-552 From Nitrosomonas Europaea, Nmr,
Mean Structure Refined With Explicit Hydrogen Bond
Constraints
pdb|1A8C|A Chain A, Primary Sequence And Solution Conformation Of
Ferrocytochrome C-552 From Nitrosomonas Europaea, Nmr,
Mean Structure Refined Without Hydrogen Bond Constraints
Length = 81
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 79 ASRSYETESQGTAYKDMSSMYQDQRVQPCHLSSSIYYGGQDVYS--PRPPN 127
A ET+ G A KD+++ Y D+ +L+ I G V+ P PPN
Sbjct: 12 ACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPN 62
>pdb|1PS0|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1Q1N|A Chain A, Apo And Holo Structures Of An Nadp(h)-dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1PIW|A Chain A, Apo And Holo Structures Of An Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
pdb|1PIW|B Chain B, Apo And Holo Structures Of An Nadp(H)-Dependent Cinnamyl
Alcohol Dehydrogenase From Saccharomyces Cerevisiae
Length = 360
Score = 30.0 bits (66), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 106 PCHLSSSIYYGGQDVYSPRPPNSQGPG 132
P HL++ + GG VYSP N GPG
Sbjct: 154 PSHLAAPLLCGGLTVYSPLVRNGCGPG 180
>pdb|1COR|A Chain A, Investigation Of The Solution Conformation Of Cytochrome
C- 551 From Pseudomonas Stutzeri
Length = 82
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 71 LLLSFPGDASRSYETESQGTAYKDMSSMYQDQRVQPCHLSSSIYYGGQDVYS--PRPPN 127
L S P A S + + G A+K++++ Y Q L+ I G Q V+ P PPN
Sbjct: 6 LFKSKPCAACHSIDAKLVGPAFKEVAAKYAGQDGAADLLAGHIKNGSQGVWGPIPMPPN 64
>pdb|2W5N|A Chain A, Native Structure Of The Gh93 Alpha-L-Arabinofuranosidase
Of Fusarium Graminearum
Length = 367
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 77 GDASRSYETESQGTAYKDMSSMYQDQRVQPCHLSSSIYYGGQDVYSPRPPNSQGPGVNSV 136
G + E T Y+D +Y +P LS G + YSP PPN P V S
Sbjct: 8 GKTFSNVEIFDPPTNYRDPQVLY----ARPLELSDGTLLGTWENYSPEPPNVWFPIVKS- 62
Query: 137 FKKDG 141
KDG
Sbjct: 63 --KDG 65
>pdb|2YDT|A Chain A, Structure Of The Alpha-L-Arabinofuranosidase Arb93a From
Fusarium Graminearum In Complexe With An Iminosugar
Inhibitor
Length = 367
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 77 GDASRSYETESQGTAYKDMSSMYQDQRVQPCHLSSSIYYGGQDVYSPRPPNSQGPGVNSV 136
G + E T Y+D +Y +P LS G + YSP PPN P V S
Sbjct: 8 GKTFSNVEIFDPPTNYRDPQVLY----ARPLELSDGTLLGTWENYSPEPPNVWFPIVKS- 62
Query: 137 FKKDG 141
KDG
Sbjct: 63 --KDG 65
>pdb|2YDP|A Chain A, Structure Of The E242a Mutant Of The
Alpha-L-Arabinofuranosidase Arb93a From Fusarium
Graminearum In Complex With An Iminosugar Inhibitor
pdb|2YDP|B Chain B, Structure Of The E242a Mutant Of The
Alpha-L-Arabinofuranosidase Arb93a From Fusarium
Graminearum In Complex With An Iminosugar Inhibitor
pdb|2YDP|C Chain C, Structure Of The E242a Mutant Of The
Alpha-L-Arabinofuranosidase Arb93a From Fusarium
Graminearum In Complex With An Iminosugar Inhibitor
Length = 367
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 77 GDASRSYETESQGTAYKDMSSMYQDQRVQPCHLSSSIYYGGQDVYSPRPPNSQGPGVNSV 136
G + E T Y+D +Y +P LS G + YSP PPN P V S
Sbjct: 8 GKTFSNVEIFDPPTNYRDPQVLY----ARPLELSDGTLLGTWENYSPEPPNVWFPIVKS- 62
Query: 137 FKKDG 141
KDG
Sbjct: 63 --KDG 65
>pdb|2W5O|A Chain A, Complex Structure Of The Gh93 Alpha-L-Arabinofuranosidase
Of Fusarium Graminearum With Arabinobiose
Length = 367
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 77 GDASRSYETESQGTAYKDMSSMYQDQRVQPCHLSSSIYYGGQDVYSPRPPNSQGPGVNSV 136
G + E T Y+D +Y +P LS G + YSP PPN P V S
Sbjct: 8 GKTFSNVEIFDPPTNYRDPQVLY----ARPLELSDGTLLGTWENYSPEPPNVWFPIVKS- 62
Query: 137 FKKDG 141
KDG
Sbjct: 63 --KDG 65
>pdb|1HQZ|1 Chain 1, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|2 Chain 2, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|3 Chain 3, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|4 Chain 4, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|5 Chain 5, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|6 Chain 6, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|7 Chain 7, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|8 Chain 8, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|9 Chain 9, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
Length = 141
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 66 PTTPVLLLSFPGDASRSYETESQGTAYKDMSSMYQDQRVQ 105
P T L++S +A + YE ES G+++ D ++ + +VQ
Sbjct: 28 PDTTWLIIS--PNAKKEYEPESTGSSFHDFLQLFDETKVQ 65
>pdb|3TC2|A Chain A, Crystal Structure Of Potato Serine Protease Inhibitor.
pdb|3TC2|B Chain B, Crystal Structure Of Potato Serine Protease Inhibitor.
pdb|3TC2|C Chain C, Crystal Structure Of Potato Serine Protease Inhibitor
Length = 187
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 117 GQDVYSPRPPNSQGPGVNSVFK 138
G DVY + PNS P N VF+
Sbjct: 33 GGDVYLGKSPNSDAPCANGVFR 54
>pdb|2RCS|H Chain H, Immunoglobulin 48g7 Germline Fab-Affinity Maturation Of An
Esterolytic Antibody
pdb|1AJ7|H Chain H, Immunoglobulin 48g7 Germline Fab Antibody Complexed With
Hapten 5-(Para-Nitrophenyl Phosphonate)-Pentanoic Acid.
Affinity Maturation Of An Esterolytic Antibody
Length = 217
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 75 FPGDASRSYETESQGTAYKDMSSMY-QDQRVQPCHLSSSIYYGGQDVYSPRPPNSQGPGV 133
F G A+ + +T S TAY +SS+ +D V C IY+G + +++GP V
Sbjct: 64 FQGKATITADTSSN-TAYLQLSSLTSEDTAVYYCASYYGIYWGQGTTLTVSSASTKGPSV 122
Query: 134 NSVFKKDGEDDSGSASRG 151
+ G+A+ G
Sbjct: 123 FPLAPSSKSTSGGTAALG 140
>pdb|1T3T|A Chain A, Structure Of Formylglycinamide Synthetase
pdb|3UJN|A Chain A, Formyl Glycinamide Ribonucleotide Amidotransferase From
Salmonella Typhimurium : Role Of The Atp Complexation
And Glutaminase Domain In Catalytic Coupling
pdb|3UMM|A Chain A, Formylglycinamide Ribonucleotide Amidotransferase From
Salmonella Typhimurium: Role Of The Atp Complexation And
Glutaminase Domain In Catalytic Coupling
Length = 1303
Score = 26.2 bits (56), Expect = 8.9, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 63 NTKPTTPVLLLSFPGDASRSYETESQGTAYKDMSSMYQDQRVQPCHLSSSI-YYGGQDVY 121
NT TTP +LS D + E + G + D ++ D +P H+ + +
Sbjct: 251 NTFETTPDYVLSAYKDNAAVMEGSAVGRYFADHNTGRYDFHQEPAHILMKVETHNHPTAI 310
Query: 122 SPRPPNSQGPGVNSVFKKDGE-DDSGSASRG 151
SP P + G G GE D G+ RG
Sbjct: 311 SPWPGAATGSG--------GEIRDEGATGRG 333
>pdb|3UGJ|A Chain A, Formyl Glycinamide Ribonucletide Amidotransferase From
Salmonella Typhimurum: Role Of The Atp Complexation And
Glutaminase Domain In Catalytic Coupling
Length = 1303
Score = 26.2 bits (56), Expect = 8.9, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 63 NTKPTTPVLLLSFPGDASRSYETESQGTAYKDMSSMYQDQRVQPCHLSSSI-YYGGQDVY 121
NT TTP +LS D + E + G + D ++ D +P H+ + +
Sbjct: 251 NTFETTPDYVLSAYKDNAAVMEGSAVGRYFADHNTGRYDFHQEPAHILMKVETHNHPTAI 310
Query: 122 SPRPPNSQGPGVNSVFKKDGE-DDSGSASRG 151
SP P + G G GE D G+ RG
Sbjct: 311 SPWPGAATGSG--------GEIRDEGATGRG 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.306 0.124 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,658,145
Number of Sequences: 62578
Number of extensions: 177615
Number of successful extensions: 210
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 24
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 47 (22.7 bits)