BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031413
         (160 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P00099|CY551_PSEAE Cytochrome c-551 OS=Pseudomonas aeruginosa (strain ATCC 15692 /
           PAO1 / 1C / PRS 101 / LMG 12228) GN=nirM PE=1 SV=2
          Length = 104

 Score = 32.3 bits (72), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 79  ASRSYETESQGTAYKDMSSMYQDQRVQPCHLSSSIYYGGQDVYS--PRPPNS 128
           A  + +T+  G AYKD+++ +  Q      L+  I  G Q V+   P PPN+
Sbjct: 36  ACHAIDTKMVGPAYKDVAAKFAGQAGAEAELAQRIKNGSQGVWGPIPMPPNA 87


>sp|P15622|ZN250_HUMAN Zinc finger protein 250 OS=Homo sapiens GN=ZNF250 PE=2 SV=3
          Length = 560

 Score = 32.0 bits (71), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 2/103 (1%)

Query: 3   GRKQTGSSSSLTNELFGSKESSSSSGIFGSIFSPPSKVLGRESLHSESMEKKHDSSKEAW 62
           G+     S  + ++   + E     G  G  FS    ++  E +H+     +     +A+
Sbjct: 429 GKAFVQHSHLIQHQRVHTGEKPYVCGECGHAFSARRSLIQHERIHTGEKPFQCTECGKAF 488

Query: 63  NTKPTTPVLLLSFPGDASRSYETESQGTAYKDMSSMYQDQRVQ 105
           + K T  V L +  G+  + YE  S G A+   S + Q QR+ 
Sbjct: 489 SLKATLIVHLRTHTGE--KPYECNSCGKAFSQYSVLIQHQRIH 529


>sp|Q89AJ6|ODO2_BUCBP Dihydrolipoyllysine-residue succinyltransferase component of
           2-oxoglutarate dehydrogenase complex OS=Buchnera
           aphidicola subsp. Baizongia pistaciae (strain Bp)
           GN=sucB PE=3 SV=1
          Length = 410

 Score = 32.0 bits (71), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 7/49 (14%)

Query: 6   QTGSSSSLT-NELFGSKESSSSSGIFGSIFSPP------SKVLGRESLH 47
           + G +S LT ++L G   + ++ G+FGS+FS P      S +LG  ++H
Sbjct: 309 EKGKNSKLTIDDLIGGNFTITNGGVFGSLFSTPLINPPQSAILGMHAIH 357


>sp|P95339|CY552_NITEU Cytochrome c-552 OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
           14298) GN=cyt PE=1 SV=2
          Length = 103

 Score = 30.8 bits (68), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 79  ASRSYETESQGTAYKDMSSMYQDQRVQPCHLSSSIYYGGQDVYS--PRPPN 127
           A    ET+  G A KD+++ Y D+     +L+  I  G   V+   P PPN
Sbjct: 34  ACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPN 84


>sp|Q9PQZ0|Y154_UREPA Uncharacterized protein UU154 OS=Ureaplasma parvum serovar 3
           (strain ATCC 700970) GN=UU154 PE=4 SV=1
          Length = 218

 Score = 30.4 bits (67), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 18/94 (19%)

Query: 14  TNELFGSKES----SSSSGIFGSIFSPPSKVLGRESLHSESMEKKHDSSKEAWNTKPTTP 69
           T  L G  +S    + S+    +I SP  K LG  ++ +E    ++ ++K  W TKP T 
Sbjct: 97  TERLVGIVQSYNDVNKSAKTILTIRSPGLKGLG--TVEAEVFLSEYSTNKNLWLTKPITM 154

Query: 70  VL------------LLSFPGDASRSYETESQGTA 91
           +             LL+F GD    YE   QG A
Sbjct: 155 LKKVSLAHALRLSGLLAFKGDTPYIYEEMQQGEA 188


>sp|Q04894|ADH6_YEAST NADP-dependent alcohol dehydrogenase 6 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=ADH6 PE=1 SV=1
          Length = 360

 Score = 29.6 bits (65), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 106 PCHLSSSIYYGGQDVYSPRPPNSQGPG 132
           P HL++ +  GG  VYSP   N  GPG
Sbjct: 154 PSHLAAPLLCGGLTVYSPLVRNGCGPG 180


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.305    0.124    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,578,510
Number of Sequences: 539616
Number of extensions: 2505251
Number of successful extensions: 4560
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 4173
Number of HSP's gapped (non-prelim): 264
length of query: 160
length of database: 191,569,459
effective HSP length: 108
effective length of query: 52
effective length of database: 133,290,931
effective search space: 6931128412
effective search space used: 6931128412
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 56 (26.2 bits)