Query 031413
Match_columns 160
No_of_seqs 51 out of 53
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 22:10:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xnl_A ASLV/FP, membrane prote 17.3 42 0.0014 19.6 0.8 11 27-37 4-14 (29)
2 1g2b_A Spectrin alpha chain; c 15.1 26 0.0009 21.6 -0.5 9 150-158 53-61 (62)
3 2bn5_B U1 small nuclear ribonu 15.0 66 0.0023 18.2 1.2 14 32-45 8-22 (26)
4 3fbi_A Mediator of RNA polymer 11.0 75 0.0026 22.4 0.8 11 29-39 9-19 (84)
5 1rr7_A Middle operon regulator 8.5 87 0.003 23.0 0.3 10 114-123 63-72 (129)
6 1i1j_A Melanoma derived growth 8.3 58 0.002 23.1 -0.7 7 152-158 59-65 (108)
7 3f3b_A Phage-like element PBSX 8.3 65 0.0022 24.6 -0.5 11 64-74 24-34 (126)
8 2jmc_A Spectrin alpha chain, b 7.3 1.1E+02 0.0039 19.5 0.4 7 151-157 24-30 (77)
9 2lx7_A GAS-7, growth arrest-sp 7.3 86 0.0029 19.9 -0.2 8 151-158 37-44 (60)
10 1awj_A ITK; transferase, regul 7.0 1.3E+02 0.0045 19.1 0.7 8 150-157 52-59 (77)
No 1
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=17.31 E-value=42 Score=19.61 Aligned_cols=11 Identities=45% Similarity=0.815 Sum_probs=8.6
Q ss_pred CcccccccCCC
Q 031413 27 SGIFGSIFSPP 37 (160)
Q Consensus 27 sgiF~SIFppp 37 (160)
.-||.+||.|-
T Consensus 4 Ari~as~faPG 14 (29)
T 1xnl_A 4 ARIFASILAPG 14 (29)
T ss_dssp TSSTTTSSSTT
T ss_pred hhHHHHHhCcc
Confidence 34899999975
No 2
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=15.12 E-value=26 Score=21.63 Aligned_cols=9 Identities=22% Similarity=1.110 Sum_probs=6.9
Q ss_pred CCccCCccc
Q 031413 150 RGNWWQGSL 158 (160)
Q Consensus 150 RGnWWQGSl 158 (160)
.++||+|.+
T Consensus 53 ~~~Ww~g~~ 61 (62)
T 1g2b_A 53 NKDWWKVEV 61 (62)
T ss_dssp SSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 378999865
No 3
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=14.97 E-value=66 Score=18.17 Aligned_cols=14 Identities=50% Similarity=1.089 Sum_probs=7.9
Q ss_pred cccC-CCccccCccc
Q 031413 32 SIFS-PPSKVLGRES 45 (160)
Q Consensus 32 SIFp-pps~v~gr~s 45 (160)
-||+ ||+..+||.-
T Consensus 8 nmfsvppppi~gr~n 22 (26)
T 2bn5_B 8 NMFSVPPPPILGRGX 22 (26)
T ss_dssp CCCSCCCCSCCCCC-
T ss_pred ceecCCCCCcccCCc
Confidence 3565 4456777763
No 4
>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A
Probab=10.96 E-value=75 Score=22.39 Aligned_cols=11 Identities=27% Similarity=0.706 Sum_probs=6.9
Q ss_pred ccccccCCCcc
Q 031413 29 IFGSIFSPPSK 39 (160)
Q Consensus 29 iF~SIFppps~ 39 (160)
.++|+||||+.
T Consensus 9 ~isSlfPpPPP 19 (84)
T 3fbi_A 9 EVSSLYPPPPP 19 (84)
T ss_dssp ---CCSCCCCG
T ss_pred ccccCCCCCCc
Confidence 56799998874
No 5
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=8.49 E-value=87 Score=22.98 Aligned_cols=10 Identities=50% Similarity=0.929 Sum_probs=8.9
Q ss_pred eecCccccCC
Q 031413 114 YYGGQDVYSP 123 (160)
Q Consensus 114 yYGGqd~Ys~ 123 (160)
||||+.+|-|
T Consensus 63 ~~gG~~iYIP 72 (129)
T 1rr7_A 63 HLGGGQVYIP 72 (129)
T ss_dssp HHCSSCCCCC
T ss_pred HHCCeeEEee
Confidence 7899999985
No 6
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Probab=8.32 E-value=58 Score=23.07 Aligned_cols=7 Identities=43% Similarity=1.161 Sum_probs=5.7
Q ss_pred ccCCccc
Q 031413 152 NWWQGSL 158 (160)
Q Consensus 152 nWWQGSl 158 (160)
|||+|.+
T Consensus 59 dWW~G~~ 65 (108)
T 1i1j_A 59 LFWGGSV 65 (108)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 6999865
No 7
>3f3b_A Phage-like element PBSX protein XKDH; NESG X-RAY SR362 P54328 structure, structural genomics, PSI- 2, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=8.26 E-value=65 Score=24.60 Aligned_cols=11 Identities=18% Similarity=0.057 Sum_probs=9.0
Q ss_pred CCCCCcccccC
Q 031413 64 TKPTTPVLLLS 74 (160)
Q Consensus 64 ~k~~~~~~~~~ 74 (160)
+|+|+|...++
T Consensus 24 gkfGIP~e~lq 34 (126)
T 3f3b_A 24 GRFGIPADRLQ 34 (126)
T ss_dssp BTTTBCCCTTS
T ss_pred cccCCChhhcC
Confidence 68999988775
No 8
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}
Probab=7.33 E-value=1.1e+02 Score=19.55 Aligned_cols=7 Identities=29% Similarity=1.327 Sum_probs=5.7
Q ss_pred CccCCcc
Q 031413 151 GNWWQGS 157 (160)
Q Consensus 151 GnWWQGS 157 (160)
++||+|.
T Consensus 24 ~~Ww~g~ 30 (77)
T 2jmc_A 24 KDWWKVE 30 (77)
T ss_dssp SSCCCEE
T ss_pred CCEEEEE
Confidence 7899985
No 9
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=7.27 E-value=86 Score=19.92 Aligned_cols=8 Identities=50% Similarity=1.739 Sum_probs=6.1
Q ss_pred CccCCccc
Q 031413 151 GNWWQGSL 158 (160)
Q Consensus 151 GnWWQGSl 158 (160)
.+||.|.+
T Consensus 37 ~~Ww~g~~ 44 (60)
T 2lx7_A 37 GGWWEGEK 44 (60)
T ss_dssp TSCEEEEC
T ss_pred CCeEEEEe
Confidence 47999864
No 10
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A
Probab=7.03 E-value=1.3e+02 Score=19.10 Aligned_cols=8 Identities=25% Similarity=0.995 Sum_probs=6.3
Q ss_pred CCccCCcc
Q 031413 150 RGNWWQGS 157 (160)
Q Consensus 150 RGnWWQGS 157 (160)
.++||+|.
T Consensus 52 ~~~Ww~~~ 59 (77)
T 1awj_A 52 EIHWWRVQ 59 (77)
T ss_dssp SSSBCCCC
T ss_pred CCCCEEEE
Confidence 36899985
Done!