BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031414
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H2U|A Chain A, Crystal Structure Of The E130y Mutant Of Human Soluble
Calcium-Activated Nucleotidase (Scan) With Calcium Ion
pdb|2H2U|B Chain B, Crystal Structure Of The E130y Mutant Of Human Soluble
Calcium-Activated Nucleotidase (Scan) With Calcium Ion
Length = 339
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 44 WTTSTCDMDNSA---VQSQGSISSLGTNNLIPDTNGGSGSASA-PSEFVNHGFLLWNQTR 99
WTT+T D+ N V+ G S+ N + + N +A P ++ H W+ T
Sbjct: 171 WTTTTGDVVNENPEWVKVVGYKGSVDHENWVSNYNALRAAAGIQPPGYLIHESACWSDTL 230
Query: 100 QRWI 103
QRW
Sbjct: 231 QRWF 234
>pdb|2H2N|A Chain A, Crystal Structure Of Human Soluble Calcium-activated
Nucleotidase (scan) With Calcium Ion
pdb|2H2N|B Chain B, Crystal Structure Of Human Soluble Calcium-activated
Nucleotidase (scan) With Calcium Ion
Length = 339
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 44 WTTSTCDMDNSA---VQSQGSISSLGTNNLIPDTNGGSGSASA-PSEFVNHGFLLWNQTR 99
WTT+T D+ N V+ G S+ N + + N +A P ++ H W+ T
Sbjct: 171 WTTTTGDVVNENPEWVKVVGYKGSVDHENWVSNYNALRAAAGIQPPGYLIHESACWSDTL 230
Query: 100 QRWI 103
QRW
Sbjct: 231 QRWF 234
>pdb|1S18|A Chain A, Structure And Protein Design Of Human Apyrase
pdb|1S18|B Chain B, Structure And Protein Design Of Human Apyrase
pdb|1S1D|A Chain A, Structure And Protein Design Of Human Apyrase
pdb|1S1D|B Chain B, Structure And Protein Design Of Human Apyrase
Length = 331
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 44 WTTSTCDMDNSA---VQSQGSISSLGTNNLIPDTNGGSGSASA-PSEFVNHGFLLWNQTR 99
WTT+T D+ N V+ G S+ N + + N +A P ++ H W+ T
Sbjct: 163 WTTTTGDVVNENPEWVKVVGYKGSVDHENWVSNYNALRAAAGIQPPGYLIHESACWSDTL 222
Query: 100 QRWI 103
QRW
Sbjct: 223 QRWF 226
>pdb|3M1E|A Chain A, Crystal Structure Of Benm_dbd
Length = 94
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 10 CFIRPPVNTSASNLSKELGVPGRSAGKRSIS 40
C +PP++ NL +ELG+ G R +
Sbjct: 26 CIAQPPLSRQIQNLEEELGIQLLERGSRPVK 56
>pdb|3K1M|A Chain A, Crystal Structure Of Full-Length Benm, R156h Mutant
pdb|3K1M|B Chain B, Crystal Structure Of Full-Length Benm, R156h Mutant
Length = 312
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 10 CFIRPPVNTSASNLSKELGVPGRSAGKRSIS 40
C +PP++ NL +ELG+ G R +
Sbjct: 26 CIAQPPLSRQIQNLEEELGIQLLERGSRPVK 56
>pdb|3K1N|A Chain A, Crystal Structure Of Full-Length Benm
pdb|3K1N|B Chain B, Crystal Structure Of Full-Length Benm
Length = 312
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 10 CFIRPPVNTSASNLSKELGVPGRSAGKRSIS 40
C +PP++ NL +ELG+ G R +
Sbjct: 26 CIAQPPLSRQIQNLEEELGIQLLERGSRPVK 56
>pdb|2H99|A Chain A, Crystal Structure Of The Effector Binding Domain Of A
Benm Variant (R156h,T157s)
pdb|2H99|B Chain B, Crystal Structure Of The Effector Binding Domain Of A
Benm Variant (R156h,T157s)
pdb|2H9B|A Chain A, Crystal Structure Of The Effector Binding Domain Of A
Benm Variant (Benm R156hT157S)
pdb|2H9B|B Chain B, Crystal Structure Of The Effector Binding Domain Of A
Benm Variant (Benm R156hT157S)
Length = 312
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 10 CFIRPPVNTSASNLSKELGVPGRSAGKRSI 39
C +PP++ NL +ELG+ G R +
Sbjct: 26 CIAQPPLSRQIQNLEEELGIQLLERGSRPV 55
>pdb|3K1P|A Chain A, Crystal Structure Of Full-Length Benm E226k Mutant
pdb|3K1P|B Chain B, Crystal Structure Of Full-Length Benm E226k Mutant
Length = 312
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 10 CFIRPPVNTSASNLSKELGVPGRSAGKRSIS 40
C +PP++ NL +ELG+ G R +
Sbjct: 26 CIAQPPLSRQIQNLEEELGIQLLERGSRPVK 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,280,652
Number of Sequences: 62578
Number of extensions: 207012
Number of successful extensions: 348
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 13
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)