BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031414
(160 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6FSW2|RAD52_CANGA DNA repair and recombination protein RAD52 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=RAD52 PE=3 SV=1
Length = 505
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 39 ISEDFWTTSTCDMDNSAVQSQGSISSLGTNNLIPDTN--GGSGSASAPSEFVNHGFLLWN 96
ISE + ++T D DN AV+ Q L N IPDTN +GSA AP+ N+
Sbjct: 175 ISE-YSRSNTIDNDNPAVKRQ----KLNNQNSIPDTNKVKYNGSAPAPAITYNNAPKKPV 229
Query: 97 QTRQRWIGN 105
Q+ +R+ N
Sbjct: 230 QSEERYAPN 238
>sp|C6Y4B4|YEHU_SCHPO Uncharacterized protein C23H4.21 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC23H4.21 PE=2 SV=1
Length = 122
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 95 WNQTRQRWIGNKKAENRT---HQVREPKLNWNATYESLLGSNKPFPQPIPLSEMVDFLVD 151
W++ R W+ KK+ T ++V P+ + YE+L+ + +P+ LS ++ L
Sbjct: 42 WHKRRSSWLLGKKSTEETDSSNEVVVPENVYLNVYEALVYRRQKLKRPVKLSIVIAVLKA 101
Query: 152 IWEQEGMY 159
W ++G +
Sbjct: 102 GWIRDGFW 109
>sp|Q12192|RFM1_YEAST Repression factor of MSEs protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RFM1 PE=1 SV=1
Length = 310
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 121 NWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEG 157
N + T + GS PFP PI E +D DI E++G
Sbjct: 157 NDDVTISEINGSELPFPIPISEVENIDIASDITERDG 193
>sp|O53895|MPRB_MYCTU Signal transduction histidine-protein kinase/phosphatase MprB
OS=Mycobacterium tuberculosis GN=mprB PE=1 SV=1
Length = 504
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 67 TNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNWNATY 126
T++L P GS + +E N ++R+R + + H++R P +
Sbjct: 205 TDDLRPIPVFGSDELARLTEAFNLMLRALAESRERQA--RLVTDAGHELRTPLTSLRTNV 262
Query: 127 ESLLGSNKPFPQPIPLSEMVDFLVDIWEQ 155
E L+ S P +P EMVD D+ Q
Sbjct: 263 ELLMASMAPGAPRLPKQEMVDLRADVLAQ 291
>sp|A5U124|MPRB_MYCTA Signal transduction histidine-protein kinase/phosphatase MprB
OS=Mycobacterium tuberculosis (strain ATCC 25177 /
H37Ra) GN=mprB PE=3 SV=1
Length = 504
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 67 TNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNWNATY 126
T++L P GS + +E N ++R+R + + H++R P +
Sbjct: 205 TDDLRPIPVFGSDELARLTEAFNLMLRALAESRERQA--RLVTDAGHELRTPLTSLRTNV 262
Query: 127 ESLLGSNKPFPQPIPLSEMVDFLVDIWEQ 155
E L+ S P +P EMVD D+ Q
Sbjct: 263 ELLMASMAPGAPRLPKQEMVDLRADVLAQ 291
>sp|A1KHB8|MPRB_MYCBP Signal transduction histidine-protein kinase/phosphatase MprB
OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2)
GN=mprB PE=3 SV=1
Length = 504
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 67 TNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNWNATY 126
T++L P GS + +E N ++R+R + + H++R P +
Sbjct: 205 TDDLRPIPVFGSDELARLTEAFNLMLRALAESRERQA--RLVTDAGHELRTPLTSLRTNV 262
Query: 127 ESLLGSNKPFPQPIPLSEMVDFLVDIWEQ 155
E L+ S P +P EMVD D+ Q
Sbjct: 263 ELLMASMAPGAPRLPKQEMVDLRADVLAQ 291
>sp|Q7U0X3|MPRB_MYCBO Signal transduction histidine-protein kinase/phosphatase MprB
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=mprB PE=1 SV=1
Length = 504
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 67 TNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKLNWNATY 126
T++L P GS + +E N ++R+R + + H++R P +
Sbjct: 205 TDDLRPIPVFGSDELARLTEAFNLMLRALAESRERQA--RLVTDAGHELRTPLTSLRTNV 262
Query: 127 ESLLGSNKPFPQPIPLSEMVDFLVDIWEQ 155
E L+ S P +P EMVD D+ Q
Sbjct: 263 ELLMASMAPGAPRLPKQEMVDLRADVLAQ 291
>sp|Q1ZZM3|RHGE_ASPNG Probable rhamnogalacturonase E OS=Aspergillus niger GN=rhgE PE=3
SV=1
Length = 450
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 10/99 (10%)
Query: 70 LIPDTNGGSGSAS--APSEFVNHGFLLWNQTRQRWIGNKKAENRTHQVREPKL-NWNATY 126
++ +NGGSG S F+ HG W + NW T
Sbjct: 275 MMIKSNGGSGDVSNAVFENFIGHGNAYSLDLDSYWSSMDAIDGDGIYYHNITFQNWTGT- 333
Query: 127 ESLLGSNKP-----FPQPIPLSEMVDFLVDIWEQEGMYD 160
++ G +P P+ P +E+ +D+W +EG YD
Sbjct: 334 -AVDGETRPPIRVICPEDTPCTEIALVQIDLWVEEGGYD 371
>sp|Q84RQ8|ARI15_ARATH Probable E3 ubiquitin-protein ligase ARI15 OS=Arabidopsis thaliana
GN=ARI15 PE=2 SV=1
Length = 452
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 72 PDTNGGSGSASAPSEFVNHGFLLWNQTR 99
P+T+G SGS AP+ N GF WN+ +
Sbjct: 243 PETHGTSGSCLAPARSSNVGFNHWNRAK 270
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,110,343
Number of Sequences: 539616
Number of extensions: 2614588
Number of successful extensions: 5178
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 5135
Number of HSP's gapped (non-prelim): 60
length of query: 160
length of database: 191,569,459
effective HSP length: 108
effective length of query: 52
effective length of database: 133,290,931
effective search space: 6931128412
effective search space used: 6931128412
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)