Query 031414
Match_columns 160
No_of_seqs 79 out of 81
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 22:11:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g1p_A Conotoxin EVIA; three d 40.9 10 0.00034 23.0 1.1 13 1-13 19-31 (33)
2 3d9j_A RNA-binding protein 16; 20.9 46 0.0016 24.7 2.0 20 141-160 105-124 (145)
3 3h4c_A Transcription factor TF 19.7 37 0.0013 28.7 1.3 15 132-146 68-82 (260)
4 2km4_A Regulator of TY1 transp 19.6 45 0.0015 24.5 1.6 17 144-160 104-120 (142)
5 1ytv_M V1AR, vasopressin V1A r 17.1 92 0.0031 22.4 2.7 40 6-47 27-70 (84)
6 2auv_A Potential NAD-reducing 17.0 51 0.0017 21.7 1.3 16 5-21 51-66 (85)
7 4fu3_A Regulation of nuclear P 15.6 75 0.0026 22.5 2.0 15 146-160 104-118 (135)
8 2hc5_A ORF 99, hypothetical pr 15.5 39 0.0014 24.9 0.5 21 138-158 83-103 (117)
9 2afd_A Protein ASL1650; twiste 13.8 1.9E+02 0.0067 17.8 3.5 23 133-155 3-25 (88)
10 4flb_A Regulation of nuclear P 13.3 80 0.0027 22.3 1.6 18 143-160 100-117 (132)
No 1
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=40.90 E-value=10 Score=22.96 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=9.9
Q ss_pred CCCCCCcccCCCC
Q 031414 1 MHGSSGCLGCFIR 13 (160)
Q Consensus 1 ~~~~ggC~Gc~~k 13 (160)
+.|+|.|+|-|+.
T Consensus 19 lccsgacvgvcad 31 (33)
T 1g1p_A 19 LCCSGACVGVCAD 31 (33)
T ss_dssp CBTTBCBSSBBCC
T ss_pred cccCCceeEEeec
Confidence 3588999998863
No 2
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=20.89 E-value=46 Score=24.70 Aligned_cols=20 Identities=5% Similarity=0.429 Sum_probs=16.3
Q ss_pred ChHHHHHHHHHHHhhcCCCC
Q 031414 141 PLSEMVDFLVDIWEQEGMYD 160 (160)
Q Consensus 141 PL~EMVDfLVDiWE~EGLyd 160 (160)
..-.-+.=|++||++-++|+
T Consensus 105 ~~r~kl~rLl~iW~~r~vF~ 124 (145)
T 3d9j_A 105 DDKSKIVRVLNLWQKNNVFK 124 (145)
T ss_dssp GGHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhcCCCCCC
Confidence 45567788999999999984
No 3
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=19.71 E-value=37 Score=28.70 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=11.5
Q ss_pred CCCCCCCCCChHHHH
Q 031414 132 SNKPFPQPIPLSEMV 146 (160)
Q Consensus 132 sn~pFpqPIPL~EMV 146 (160)
..+--.+||||+||-
T Consensus 68 Aae~~~~PiplaE~r 82 (260)
T 3h4c_A 68 AAEEAQQPLPLAEVR 82 (260)
T ss_dssp HHHHTTCCCCHHHHH
T ss_pred HHHHcCCCccHHHHH
Confidence 345567999999993
No 4
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=19.61 E-value=45 Score=24.50 Aligned_cols=17 Identities=12% Similarity=0.421 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhcCCCC
Q 031414 144 EMVDFLVDIWEQEGMYD 160 (160)
Q Consensus 144 EMVDfLVDiWE~EGLyd 160 (160)
.-|.=|++|||+-+.|+
T Consensus 104 ~kv~rvl~iWeer~vf~ 120 (142)
T 2km4_A 104 KKLSRVVNILKERNIFS 120 (142)
T ss_dssp HHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHhhccCCcC
Confidence 33556779999999986
No 5
>1ytv_M V1AR, vasopressin V1A receptor; GPCR, fusion protein, maltose- binding protein, sugar binding protein, hormone receptor; HET: MAL; 1.80A {Homo sapiens}
Probab=17.08 E-value=92 Score=22.37 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=20.9
Q ss_pred CcccCCCCCCcccccCCCcccCCCCCcc----cCCCCCCCCccccc
Q 031414 6 GCLGCFIRPPVNTSASNLSKELGVPGRS----AGKRSISEDFWTTS 47 (160)
Q Consensus 6 gC~Gc~~kp~~~~~vd~~skgl~~q~~~----~~k~~~s~dfWssS 47 (160)
.||-||.|+.+-.. -|.|-+ ..+-.+ ...|..+-+.|-.+
T Consensus 27 r~fpCC~~~k~~~~-kEdSdS-ssRRtTllT~srsPt~s~~~wk~~ 70 (84)
T 1ytv_M 27 GSFPCCQNMKEKFN-KEDTDS-MSRRQTFYSNNRSPTNSTGMWKDS 70 (84)
T ss_pred hccccccCccccCC-ccCCCc-ccccceeeeccCCCCCCccccccC
Confidence 79999998876322 222222 111111 24466666777543
No 6
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=16.95 E-value=51 Score=21.75 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=11.2
Q ss_pred CCcccCCCCCCcccccC
Q 031414 5 SGCLGCFIRPPVNTSAS 21 (160)
Q Consensus 5 ggC~Gc~~kp~~~~~vd 21 (160)
.||+|.|...+. +.|+
T Consensus 51 ~~ClG~C~~~P~-v~V~ 66 (85)
T 2auv_A 51 LRCVGGCALAPI-VMVG 66 (85)
T ss_dssp SSSSSSCTTSCC-CEEG
T ss_pred CCccCcCCCCCE-EEEC
Confidence 489999987554 4455
No 7
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=15.56 E-value=75 Score=22.46 Aligned_cols=15 Identities=27% Similarity=0.915 Sum_probs=12.3
Q ss_pred HHHHHHHHhhcCCCC
Q 031414 146 VDFLVDIWEQEGMYD 160 (160)
Q Consensus 146 VDfLVDiWE~EGLyd 160 (160)
|.=|++||++-++|+
T Consensus 104 l~kll~iW~~r~vf~ 118 (135)
T 4fu3_A 104 LERLLNIWQERSVYG 118 (135)
T ss_dssp HHHHHHHHHHTTSSC
T ss_pred HHHHHHHhcCCCCcC
Confidence 445889999999985
No 8
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=15.50 E-value=39 Score=24.93 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.3
Q ss_pred CCCChHHHHHHHHHHHhhcCC
Q 031414 138 QPIPLSEMVDFLVDIWEQEGM 158 (160)
Q Consensus 138 qPIPL~EMVDfLVDiWE~EGL 158 (160)
+=||-.||+|+...+||.-||
T Consensus 83 RqIPpEe~L~l~~~l~e~~Gl 103 (117)
T 2hc5_A 83 REIPPKRWLDFYAAMTEFLGL 103 (117)
T ss_dssp EEECHHHHHHHHHHHHHHHHH
T ss_pred EeCChHHHHHHHHHHHHhhce
Confidence 669999999999999998886
No 9
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=13.83 E-value=1.9e+02 Score=17.81 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=17.6
Q ss_pred CCCCCCCCChHHHHHHHHHHHhh
Q 031414 133 NKPFPQPIPLSEMVDFLVDIWEQ 155 (160)
Q Consensus 133 n~pFpqPIPL~EMVDfLVDiWE~ 155 (160)
.....++.|..++.+.|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~~ 25 (88)
T 2afd_A 3 HMKTIQPASVEDIQSWLIDQFAQ 25 (88)
T ss_dssp CCSCCCCSSHHHHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHH
Confidence 33445677889999999999975
No 10
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=13.32 E-value=80 Score=22.34 Aligned_cols=18 Identities=33% Similarity=0.750 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 031414 143 SEMVDFLVDIWEQEGMYD 160 (160)
Q Consensus 143 ~EMVDfLVDiWE~EGLyd 160 (160)
-+-|.=|++||++-+.|+
T Consensus 100 ~~kl~~ll~iW~~r~vf~ 117 (132)
T 4flb_A 100 SKSVERIFKIWEDRNVYP 117 (132)
T ss_dssp HHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHhccCCCcC
Confidence 455677899999999985
Done!