Query 031414
Match_columns 160
No_of_seqs 79 out of 81
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 22:11:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031414.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031414hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t56a2 a.121.1.1 (A:95-214) E 47.7 1.1 7.9E-05 31.0 -1.2 60 92-155 41-115 (120)
2 d1g1pa_ g.3.6.1 (A:) Conotoxin 41.9 4.4 0.00032 22.9 1.1 12 1-12 19-30 (32)
3 d2p5zx2 b.106.1.1 (X:15-201) H 28.5 8 0.00058 27.7 0.9 14 146-159 156-169 (187)
4 d2idba2 d.333.1.1 (A:326-491) 23.5 16 0.0011 26.3 1.7 27 133-159 139-166 (166)
5 d1uv7a_ d.67.4.1 (A:) General 15.8 50 0.0036 21.0 2.7 21 138-158 33-53 (80)
6 d1eh9a2 b.71.1.1 (A:491-557) G 14.8 21 0.0015 23.2 0.5 14 128-141 40-53 (67)
7 d1ug7a_ a.24.24.1 (A:) Domain 14.2 32 0.0023 24.7 1.4 17 127-143 106-125 (128)
8 d2v4ja2 d.58.36.2 (A:2-167) Di 12.1 44 0.0032 24.7 1.8 15 143-157 111-125 (166)
9 d3c8ya1 c.96.1.1 (A:210-574) F 12.0 33 0.0024 27.2 1.1 14 1-14 288-301 (365)
10 d1yixa1 c.1.9.12 (A:1-265) Put 10.7 86 0.0063 22.7 3.1 26 129-154 201-236 (265)
No 1
>d1t56a2 a.121.1.1 (A:95-214) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=47.67 E-value=1.1 Score=31.00 Aligned_cols=60 Identities=25% Similarity=0.476 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhhcCCCCCccccc---cCCCccc-------cccc-----hhhhcCCCCCCCCCCChHHHHHHHHHHHhh
Q 031414 92 FLLWNQTRQRWIGNKKAENRTHQ---VREPKLN-------WNAT-----YESLLGSNKPFPQPIPLSEMVDFLVDIWEQ 155 (160)
Q Consensus 92 l~~W~q~R~qWvg~~~~~~~~~~---~reP~is-------wnaT-----yE~LLgsn~pFpqPIPL~EMVDfLVDiWE~ 155 (160)
-.+|++.|+.|+......=+..| ...|.++ ++.. |..+. .++ ..++..+.|+-|..||-.
T Consensus 41 ~~~w~~~~~~~i~~ia~~I~~~q~~G~a~~~ld~~~~A~AL~~M~er~~~~~~~-~~~---~~~d~e~~v~tL~~iW~~ 115 (120)
T d1t56a2 41 AELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFA-GEQ---PSVPEARVLDTLVHIWVT 115 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCSCHHHHHHHHHHHHHHHHHHHHH-TCS---SCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHc-cCC---CCCCHHHHHHHHHHHHHH
Confidence 45899999999986422111110 1112221 3333 33332 222 227899999999999953
No 2
>d1g1pa_ g.3.6.1 (A:) Conotoxin {Conus ermineus, E VIa [TaxId: 55423]}
Probab=41.93 E-value=4.4 Score=22.93 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=9.5
Q ss_pred CCCCCCcccCCC
Q 031414 1 MHGSSGCLGCFI 12 (160)
Q Consensus 1 ~~~~ggC~Gc~~ 12 (160)
+.|+|.|+|-|+
T Consensus 19 lccsgacvgvca 30 (32)
T d1g1pa_ 19 LCCSGACVGVCA 30 (32)
T ss_dssp CBTTBCBSSBBC
T ss_pred ccccCceeEEec
Confidence 358889999885
No 3
>d2p5zx2 b.106.1.1 (X:15-201) Hypothetical protein c3393 {Escherichia coli o6 [TaxId: 217992]}
Probab=28.51 E-value=8 Score=27.71 Aligned_cols=14 Identities=14% Similarity=0.586 Sum_probs=12.9
Q ss_pred HHHHHHHHhhcCCC
Q 031414 146 VDFLVDIWEQEGMY 159 (160)
Q Consensus 146 VDfLVDiWE~EGLy 159 (160)
-|||..++|+||+|
T Consensus 156 ~~Fl~RL~ee~Gi~ 169 (187)
T d2p5zx2 156 LTFVSRLLSEVGIW 169 (187)
T ss_dssp HHHHHHHHHHHTCE
T ss_pred HHHHHHHHHhcCCE
Confidence 48999999999997
No 4
>d2idba2 d.333.1.1 (A:326-491) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD {Escherichia coli [TaxId: 562]}
Probab=23.46 E-value=16 Score=26.32 Aligned_cols=27 Identities=19% Similarity=0.624 Sum_probs=21.9
Q ss_pred CCCCCCCCCh-HHHHHHHHHHHhhcCCC
Q 031414 133 NKPFPQPIPL-SEMVDFLVDIWEQEGMY 159 (160)
Q Consensus 133 n~pFpqPIPL-~EMVDfLVDiWE~EGLy 159 (160)
.+.||+++.. +|+.+-..+.|++=|||
T Consensus 139 ~~~~p~~~~~~~e~~~~v~~~W~elGl~ 166 (166)
T d2idba2 139 QREWGRPIKKDPDVVAHIDAIWDELAIF 166 (166)
T ss_dssp SSCCCEECCCCHHHHHHHHHHTTTSCCC
T ss_pred cccCCCcCCCCHHHHHHHHHHHHHcCCC
Confidence 3567777754 58999999999999997
No 5
>d1uv7a_ d.67.4.1 (A:) General secretion pathway protein M, EpsM {Vibrio cholerae [TaxId: 666]}
Probab=15.80 E-value=50 Score=21.04 Aligned_cols=21 Identities=33% Similarity=0.827 Sum_probs=18.7
Q ss_pred CCCChHHHHHHHHHHHhhcCC
Q 031414 138 QPIPLSEMVDFLVDIWEQEGM 158 (160)
Q Consensus 138 qPIPL~EMVDfLVDiWE~EGL 158 (160)
.++|...++..|.++-++.|+
T Consensus 33 d~v~F~~ll~WL~~L~~~~Gi 53 (80)
T d1uv7a_ 33 QPLPFSQLVSWIAYLQERQGV 53 (80)
T ss_dssp CCBCHHHHHHHHHHHHHHSCC
T ss_pred cCCCHHHHHHHHHHHHhcCCe
Confidence 468889999999999999986
No 6
>d1eh9a2 b.71.1.1 (A:491-557) Glycosyltrehalose trehalohydrolase {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}
Probab=14.84 E-value=21 Score=23.17 Aligned_cols=14 Identities=57% Similarity=0.790 Sum_probs=11.3
Q ss_pred hhcCCCCCCCCCCC
Q 031414 128 SLLGSNKPFPQPIP 141 (160)
Q Consensus 128 ~LLgsn~pFpqPIP 141 (160)
=||++|..||+.|-
T Consensus 40 LvlsSn~sFP~~I~ 53 (67)
T d1eh9a2 40 LLLSSNNSFPQHIE 53 (67)
T ss_dssp CCEESSSCSCSBCC
T ss_pred EEEecCCcCchhhh
Confidence 46788889999884
No 7
>d1ug7a_ a.24.24.1 (A:) Domain from hypothetical 2610208m17rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.24 E-value=32 Score=24.71 Aligned_cols=17 Identities=47% Similarity=0.739 Sum_probs=13.4
Q ss_pred hhhcCCCCCCC---CCCChH
Q 031414 127 ESLLGSNKPFP---QPIPLS 143 (160)
Q Consensus 127 E~LLgsn~pFp---qPIPL~ 143 (160)
..||..|+||| +||||.
T Consensus 106 knll~~~keFP~~v~~~~~~ 125 (128)
T d1ug7a_ 106 KNILTYNKEFPFDVQPISGP 125 (128)
T ss_dssp HTTTTCCSCCSSCCCCSSCC
T ss_pred HHHhhcCCCCCcccccCCcc
Confidence 37889999998 677764
No 8
>d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
Probab=12.07 E-value=44 Score=24.75 Aligned_cols=15 Identities=33% Similarity=0.833 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhcC
Q 031414 143 SEMVDFLVDIWEQEG 157 (160)
Q Consensus 143 ~EMVDfLVDiWE~EG 157 (160)
.+....|.||||.-|
T Consensus 111 T~~LR~LcDiWek~G 125 (166)
T d2v4ja2 111 ADYLRQLCDIWDLRG 125 (166)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhc
Confidence 688899999999866
No 9
>d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain {Clostridium pasteurianum [TaxId: 1501]}
Probab=12.03 E-value=33 Score=27.16 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=10.4
Q ss_pred CCCCCCcccCCCCC
Q 031414 1 MHGSSGCLGCFIRP 14 (160)
Q Consensus 1 ~~~~ggC~Gc~~kp 14 (160)
|||-|||++....|
T Consensus 288 mACpgGCinGgGq~ 301 (365)
T d3c8ya1 288 MACHGGCVNGGGQP 301 (365)
T ss_dssp ESSTTSGGGCTTSC
T ss_pred ecCCCCCcCCCCcC
Confidence 68999999765443
No 10
>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]}
Probab=10.71 E-value=86 Score=22.72 Aligned_cols=26 Identities=15% Similarity=0.636 Sum_probs=21.2
Q ss_pred hcCCCCCCCCCCC----------hHHHHHHHHHHHh
Q 031414 129 LLGSNKPFPQPIP----------LSEMVDFLVDIWE 154 (160)
Q Consensus 129 LLgsn~pFpqPIP----------L~EMVDfLVDiWE 154 (160)
||.|-.||-.|.| |.++++.|.+++.
T Consensus 201 LlETD~P~~~p~~~~~~~n~P~~i~~~~~~iA~i~~ 236 (265)
T d1yixa1 201 LVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKG 236 (265)
T ss_dssp EECCCBTSCCCTTCTTSCCCGGGHHHHHHHHHHHHT
T ss_pred EeecCCcccCccccCCCCCCcHHHHHHHHHHHHHHC
Confidence 5688899988877 7788999988875
Done!