Query 031415
Match_columns 160
No_of_seqs 79 out of 81
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 13:47:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13259 DUF4050: Protein of u 100.0 6.1E-40 1.3E-44 249.5 7.1 113 44-160 1-122 (122)
2 PF07418 PCEMA1: Acidic phosph 49.2 7.3 0.00016 34.7 0.7 11 5-15 29-39 (282)
3 PF04818 CTD_bind: RNA polymer 37.3 26 0.00057 23.1 1.8 17 144-160 48-64 (64)
4 COG5208 HAP5 CCAAT-binding fac 36.9 18 0.00039 32.0 1.2 14 140-153 172-185 (286)
5 PLN00211 predicted protein; Pr 36.7 25 0.00055 24.9 1.7 13 142-154 29-41 (61)
6 PF10813 DUF2733: Protein of u 31.8 25 0.00055 22.1 0.9 28 4-43 1-29 (32)
7 PF09012 FeoC: FeoC like trans 31.6 41 0.00089 22.6 2.1 16 143-158 28-43 (69)
8 COG1709 Predicted transcriptio 31.6 36 0.00077 29.9 2.2 25 125-149 94-127 (241)
9 PF09791 Oxidored-like: Oxidor 29.9 22 0.00048 23.8 0.5 8 3-10 19-26 (48)
10 TIGR03487 cas_csp2 CRISPR-asso 28.9 31 0.00067 32.2 1.4 13 138-150 180-192 (489)
11 PRK07738 flagellar protein Fla 28.5 46 0.001 25.9 2.1 22 138-159 91-112 (117)
12 PF10653 Phage-A118_gp45: Prot 24.7 35 0.00077 24.1 0.8 21 132-152 27-52 (62)
13 PRK10610 chemotaxis regulatory 24.0 80 0.0017 20.1 2.3 27 132-158 103-129 (129)
14 PF06749 DUF1218: Protein of u 22.2 32 0.0007 25.2 0.2 11 4-15 16-26 (97)
15 cd04096 eEF2_snRNP_like_C eEF2 22.1 38 0.00083 23.0 0.6 17 136-152 43-59 (80)
16 PF01062 Bestrophin: Bestrophi 21.6 67 0.0015 26.5 2.0 17 87-103 77-93 (293)
17 PRK00809 hypothetical protein; 21.5 60 0.0013 25.6 1.6 17 134-150 97-113 (144)
18 PRK08868 flagellar protein Fla 21.3 77 0.0017 25.7 2.2 22 138-159 116-140 (144)
19 cd03737 SOCS_SOCS3 SOCS (suppr 20.8 69 0.0015 20.9 1.5 12 139-151 26-37 (42)
20 KOG4690 Uncharacterized conser 20.1 36 0.00078 28.2 0.1 9 3-11 87-95 (165)
21 COG1533 SplB DNA repair photol 20.1 44 0.00096 29.3 0.7 64 88-153 100-179 (297)
No 1
>PF13259 DUF4050: Protein of unknown function (DUF4050)
Probab=100.00 E-value=6.1e-40 Score=249.54 Aligned_cols=113 Identities=53% Similarity=0.939 Sum_probs=97.6
Q ss_pred cccccccccCccccccccccCCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhhhcCCCCCc-------cccccC
Q 031415 44 WTTSTCDMDNSAVQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAEN-------RTHQVR 116 (160)
Q Consensus 44 WssS~~emdns~~~Sq~s~ssis~~n~~~~~~~~~~s~~~~~~fVNhgl~~W~q~R~qWvg~~~~~~-------~~~~~r 116 (160)
||||+++|||+++|+|+++++. ++..+.+........ .+|||||+++|+++|++|||+++... +....+
T Consensus 1 ~s~s~~~~d~~~~~~~~~~s~~---~~~~~~~~~~~~~~~-~~~~N~Gl~lW~~rR~~W~~~~~~~~~~~~~l~~~~~~r 76 (122)
T PF13259_consen 1 WSSSPFRFDNSDAQSQRSISST---NSSSDCSKRRKSSEE-EEFVNHGLILWEQRRQQWTGPKKSNKIIEPRLQQSNSIR 76 (122)
T ss_pred CCCCcccCcChhhhhhhccccc---cchhhhhhhhccccC-ccceeHHHHHHHHHHHHHcCCCCcccccccccccccccc
Confidence 9999999999999999999444 444444433322344 99999999999999999999988774 454588
Q ss_pred C--CccccccchhhhcCCCCCCCCCCChHHHHHHHHHHHhhcCCCC
Q 031415 117 E--PKLNWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 160 (160)
Q Consensus 117 e--P~iswnaTyE~LLgsn~pFpqPIPL~EMVDfLVDiWE~EGLyd 160 (160)
+ |.++|++|||+||+.++||++||||+|||+||||+|++||+||
T Consensus 77 ~~Ip~~~y~~iY~~Lv~~~~pf~~PI~L~dmv~~Lv~gW~~eg~w~ 122 (122)
T PF13259_consen 77 ESIPPISYPAIYEKLVGSNKPFKQPIPLSDMVDFLVDGWEEEGLWP 122 (122)
T ss_pred cccchhhHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhhcCCccC
Confidence 8 9999999999999999999999999999999999999999997
No 2
>PF07418 PCEMA1: Acidic phosphoprotein precursor PCEMA1; InterPro: IPR010882 This family consists of several acidic phosphoprotein precursor PCEMA1 sequences which appear to be found exclusively in Plasmodium chabaudi. PCEMA1 is an antigen that is associated with the membrane of the infected erythrocyte throughout the entire intraerythrocytic cycle []. The exact function of this family is unclear.
Probab=49.24 E-value=7.3 Score=34.74 Aligned_cols=11 Identities=36% Similarity=1.026 Sum_probs=8.8
Q ss_pred CCcccCCCCCC
Q 031415 5 SGCLGCFIRPP 15 (160)
Q Consensus 5 ggC~Gc~~kp~ 15 (160)
-||||||.|-+
T Consensus 29 tgcF~f~rkK~ 39 (282)
T PF07418_consen 29 TGCFGFCRKKP 39 (282)
T ss_pred cceehhhcccc
Confidence 39999998654
No 3
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=37.35 E-value=26 Score=23.13 Aligned_cols=17 Identities=29% Similarity=0.810 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhcCCCC
Q 031415 144 EMVDFLVDIWEQEGMYD 160 (160)
Q Consensus 144 EMVDfLVDiWE~EGLyd 160 (160)
+=|.=|++||++-+.|+
T Consensus 48 ~kv~rll~iW~~r~if~ 64 (64)
T PF04818_consen 48 KKVQRLLNIWEERNIFS 64 (64)
T ss_dssp HHHHHHHHHHHHCTSS-
T ss_pred HHHHHHHHHhhCCCCCC
Confidence 34567899999999986
No 4
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=36.94 E-value=18 Score=31.96 Aligned_cols=14 Identities=57% Similarity=0.845 Sum_probs=11.4
Q ss_pred CChHHHHHHHHHHH
Q 031415 140 IPLSEMVDFLVDIW 153 (160)
Q Consensus 140 IPL~EMVDfLVDiW 153 (160)
|--+||.|||+||=
T Consensus 172 v~kSeMfDFLidiv 185 (286)
T COG5208 172 VKKSEMFDFLIDIV 185 (286)
T ss_pred HHHHHHHhHHhhhc
Confidence 44589999999984
No 5
>PLN00211 predicted protein; Provisional
Probab=36.69 E-value=25 Score=24.93 Aligned_cols=13 Identities=46% Similarity=1.071 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHh
Q 031415 142 LSEMVDFLVDIWE 154 (160)
Q Consensus 142 L~EMVDfLVDiWE 154 (160)
|+-|.-||.|||-
T Consensus 29 lphMtsfLAeIwS 41 (61)
T PLN00211 29 LPHMTSFLAEIWS 41 (61)
T ss_pred cHHHHHHHHHHHH
Confidence 7999999999995
No 6
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=31.81 E-value=25 Score=22.11 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=16.6
Q ss_pred CCCcccCCCCCC-cccccCCCcccCCCCCcccCCCCCCCCc
Q 031415 4 SSGCLGCFIRPP-VNTSASNLSKELGVPGRSAGKRSISEDF 43 (160)
Q Consensus 4 ~ggC~Gc~~kp~-~~~~vd~~skgl~~q~~~~~k~~~s~df 43 (160)
||.=++||.|+. |++ -++|+.++ +.+||
T Consensus 1 MG~~~s~Ckrr~n~l~---------Dv~G~~In---l~~dF 29 (32)
T PF10813_consen 1 MGSLLSMCKRRHNPLK---------DVKGNPIN---LYKDF 29 (32)
T ss_pred CcceeeeeeccCCccc---------ccCCCEEe---chhcc
Confidence 566678887655 444 24566654 55555
No 7
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=31.65 E-value=41 Score=22.64 Aligned_cols=16 Identities=19% Similarity=0.381 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhcCC
Q 031415 143 SEMVDFLVDIWEQEGM 158 (160)
Q Consensus 143 ~EMVDfLVDiWE~EGL 158 (160)
+++|+.+.+.|++.|.
T Consensus 28 ~~~ve~mL~~l~~kG~ 43 (69)
T PF09012_consen 28 PEAVEAMLEQLIRKGY 43 (69)
T ss_dssp HHHHHHHHHHHHCCTS
T ss_pred HHHHHHHHHHHHHCCc
Confidence 7899999999999884
No 8
>COG1709 Predicted transcriptional regulator [Transcription]
Probab=31.62 E-value=36 Score=29.89 Aligned_cols=25 Identities=36% Similarity=0.701 Sum_probs=19.7
Q ss_pred chhhhcCCCCC---------CCCCCChHHHHHHH
Q 031415 125 TYESLLGSNKP---------FPQPIPLSEMVDFL 149 (160)
Q Consensus 125 TyE~LLgsn~p---------FpqPIPL~EMVDfL 149 (160)
.|+.+|+++.+ |+.||+|.|.++..
T Consensus 94 ~l~~~l~~~~~~~aildirEf~~pv~l~~~~~ai 127 (241)
T COG1709 94 ALARVLGSEFPSKAILDIREFDIPVTLEELVEAI 127 (241)
T ss_pred HHHHHhccCCchhheEehhhcCCCcCHHHHHHHh
Confidence 46777777655 99999999998753
No 9
>PF09791 Oxidored-like: Oxidoreductase-like protein, N-terminal; InterPro: IPR019180 This entry represents the N-terminal domain of various oxidoreductase-like proteins whose exact function is, as yet, unknown.
Probab=29.89 E-value=22 Score=23.80 Aligned_cols=8 Identities=50% Similarity=1.140 Sum_probs=3.8
Q ss_pred CCCCcccC
Q 031415 3 GSSGCLGC 10 (160)
Q Consensus 3 ~~ggC~Gc 10 (160)
||+||..|
T Consensus 19 CgSGC~~C 26 (48)
T PF09791_consen 19 CGSGCAPC 26 (48)
T ss_pred cccCCccc
Confidence 44455444
No 10
>TIGR03487 cas_csp2 CRISPR-associated protein, Csp2 family. Members of this protein family are cas, or CRISPR-associated, proteins. The two sequences in the alignment seed are found within cas gene clusters that are adjacent to CRISPR DNA repeats in two members of the order Bacteroidales, Porphyromonas gingivalis W83 and Bacteroides forsythus ATCC 43037. This cas protein family is unique to the Pging (Porphyromonas gingivalis) subtype.
Probab=28.92 E-value=31 Score=32.22 Aligned_cols=13 Identities=54% Similarity=1.032 Sum_probs=11.1
Q ss_pred CCCChHHHHHHHH
Q 031415 138 QPIPLSEMVDFLV 150 (160)
Q Consensus 138 qPIPL~EMVDfLV 150 (160)
.-||+.|||||+.
T Consensus 180 pdipi~emvdfi~ 192 (489)
T TIGR03487 180 PDIPINEMVDFIA 192 (489)
T ss_pred cCCcHHHHHHHHH
Confidence 4599999999974
No 11
>PRK07738 flagellar protein FlaG; Provisional
Probab=28.52 E-value=46 Score=25.92 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.3
Q ss_pred CCCChHHHHHHHHHHHhhcCCC
Q 031415 138 QPIPLSEMVDFLVDIWEQEGMY 159 (160)
Q Consensus 138 qPIPL~EMVDfLVDiWE~EGLy 159 (160)
+=||=.||+|++..+||--||+
T Consensus 91 RQIPpEe~L~l~~~m~e~~GlL 112 (117)
T PRK07738 91 REIPPKKLLDMYAAMMEFVGLL 112 (117)
T ss_pred eeCCCHHHHHHHHHHHHHhcce
Confidence 6799999999999999999985
No 12
>PF10653 Phage-A118_gp45: Protein gp45 of Bacteriophage A118; InterPro: IPR018915 The proteins in this entry represents Gp45 in Listeria phage A118 (Bacteriophage A118) and related proteins; Gp45 is thought to have a function in the phage tail-fibre system.
Probab=24.66 E-value=35 Score=24.07 Aligned_cols=21 Identities=43% Similarity=0.816 Sum_probs=15.9
Q ss_pred CCCCCCCCCChHH-----HHHHHHHH
Q 031415 132 SNKPFPQPIPLSE-----MVDFLVDI 152 (160)
Q Consensus 132 sn~pFpqPIPL~E-----MVDfLVDi 152 (160)
.|..|.|.|||-| |.|++-++
T Consensus 27 anpaf~qkiplietgcekm~dyieel 52 (62)
T PF10653_consen 27 ANPAFQQKIPLIETGCEKMTDYIEEL 52 (62)
T ss_pred cCHHHHhccchhhhhhHHHHHHHHHH
Confidence 4556999999976 77776554
No 13
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=24.00 E-value=80 Score=20.08 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=22.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhcCC
Q 031415 132 SNKPFPQPIPLSEMVDFLVDIWEQEGM 158 (160)
Q Consensus 132 sn~pFpqPIPL~EMVDfLVDiWE~EGL 158 (160)
...-+.+|+...++.+.|..+|+..|+
T Consensus 103 ~~~~i~~p~~~~~l~~~l~~~~~~~~~ 129 (129)
T PRK10610 103 ASGYVVKPFTAATLEEKLNKIFEKLGM 129 (129)
T ss_pred CCeEEECCCCHHHHHHHHHHHHHHccC
Confidence 334568899999999999999998875
No 14
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=22.21 E-value=32 Score=25.16 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=8.5
Q ss_pred CCCcccCCCCCC
Q 031415 4 SSGCLGCFIRPP 15 (160)
Q Consensus 4 ~ggC~Gc~~kp~ 15 (160)
++|| +||.|+.
T Consensus 16 ~~gC-~cc~~~~ 26 (97)
T PF06749_consen 16 AGGC-LCCGKRV 26 (97)
T ss_pred Hhcc-eEeCCCC
Confidence 4799 9998764
No 15
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=22.14 E-value=38 Score=23.05 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=12.8
Q ss_pred CCCCCChHHHHHHHHHH
Q 031415 136 FPQPIPLSEMVDFLVDI 152 (160)
Q Consensus 136 FpqPIPL~EMVDfLVDi 152 (160)
..--|||.||++|-.++
T Consensus 43 i~~~iP~~e~~~~~~~L 59 (80)
T cd04096 43 IKAYLPVIESFGFETDL 59 (80)
T ss_pred EEEEEeHHHHhCcHHHH
Confidence 34458999999987765
No 16
>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.
Probab=21.57 E-value=67 Score=26.53 Aligned_cols=17 Identities=24% Similarity=0.517 Sum_probs=15.3
Q ss_pred chhHHHHHHHHHHHhhh
Q 031415 87 FVNHGFLLWNQTRQRWI 103 (160)
Q Consensus 87 fVNhgl~~W~q~R~qWv 103 (160)
++|.++.+|-+.|+.|-
T Consensus 77 r~n~ay~Rwwe~r~~wg 93 (293)
T PF01062_consen 77 RTNTAYDRWWEARKLWG 93 (293)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57999999999999973
No 17
>PRK00809 hypothetical protein; Provisional
Probab=21.48 E-value=60 Score=25.63 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=14.1
Q ss_pred CCCCCCCChHHHHHHHH
Q 031415 134 KPFPQPIPLSEMVDFLV 150 (160)
Q Consensus 134 ~pFpqPIPL~EMVDfLV 150 (160)
+-|..||||.+|++=|.
T Consensus 97 ~~~~~~v~l~~L~~~L~ 113 (144)
T PRK00809 97 KIFEEPIDFKPLIPKLK 113 (144)
T ss_pred eecCCcccHHHHHhhhh
Confidence 55889999999988773
No 18
>PRK08868 flagellar protein FlaG; Provisional
Probab=21.25 E-value=77 Score=25.71 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.4
Q ss_pred CCCChHHHHHHHHHHHhh---cCCC
Q 031415 138 QPIPLSEMVDFLVDIWEQ---EGMY 159 (160)
Q Consensus 138 qPIPL~EMVDfLVDiWE~---EGLy 159 (160)
+=||=.||++++..|||+ -||+
T Consensus 116 RQIP~Ee~L~la~~l~e~~~~~GLl 140 (144)
T PRK08868 116 RQIPDEEMLEVLRRLAEQAHNSGLL 140 (144)
T ss_pred eeCCCHHHHHHHHHHHHhhhcccce
Confidence 679999999999999976 5886
No 19
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=20.84 E-value=69 Score=20.88 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=9.6
Q ss_pred CCChHHHHHHHHH
Q 031415 139 PIPLSEMVDFLVD 151 (160)
Q Consensus 139 PIPL~EMVDfLVD 151 (160)
|+|++ |.|||.|
T Consensus 26 ~LP~~-Lk~yL~~ 37 (42)
T cd03737 26 QLPLP-IKEFLDQ 37 (42)
T ss_pred hccHH-HHHHHHh
Confidence 67776 9999875
No 20
>KOG4690 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.15 E-value=36 Score=28.20 Aligned_cols=9 Identities=44% Similarity=1.136 Sum_probs=6.7
Q ss_pred CCCCcccCC
Q 031415 3 GSSGCLGCF 11 (160)
Q Consensus 3 ~~ggC~Gc~ 11 (160)
||+||+-|.
T Consensus 87 C~SGCv~CV 95 (165)
T KOG4690|consen 87 CMSGCVNCV 95 (165)
T ss_pred hhhccceee
Confidence 778888774
No 21
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=20.14 E-value=44 Score=29.25 Aligned_cols=64 Identities=11% Similarity=-0.019 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCc-cc----------cccCCC---ccccccch-h-hhcCCCCCCCCCCChHHHHHHHHH
Q 031415 88 VNHGFLLWNQTRQRWIGNKKAEN-RT----------HQVREP---KLNWNATY-E-SLLGSNKPFPQPIPLSEMVDFLVD 151 (160)
Q Consensus 88 VNhgl~~W~q~R~qWvg~~~~~~-~~----------~~~reP---~iswnaTy-E-~LLgsn~pFpqPIPL~EMVDfLVD 151 (160)
..+++.+|-..-..|-+..-.-. +. .+.+++ .+.++.|. | +|--.-+|+..++ .+-++.|..
T Consensus 100 ~~~~ltR~ilei~~~~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp--~~Ri~al~~ 177 (297)
T COG1533 100 KEYRLTRKILEILLKYGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSP--EERLEALKE 177 (297)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCH--HHHHHHHHH
Confidence 34578888888888877642110 00 001122 23444333 2 3665667776654 777777765
Q ss_pred HH
Q 031415 152 IW 153 (160)
Q Consensus 152 iW 153 (160)
+=
T Consensus 178 l~ 179 (297)
T COG1533 178 LS 179 (297)
T ss_pred HH
Confidence 53
Done!