BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031416
         (160 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YDU|A Chain A, Solution Nmr Structure Of At5g01610, An Arabidopsis
           Thaliana Protein Containing Duf538 Domain
          Length = 170

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 2/98 (2%)

Query: 26  EVLQEYDFPIGLLPKSVLGYTIDRTTGKFSVYLEDTCSFSI-ESYDLKYKPTITGVITKG 84
           E+L+EYD PIG+ P     Y  D  T K +V +   C     +S  LK+  T+TG + KG
Sbjct: 56  ELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKG 115

Query: 85  KISDLSGISVKVLILWLNIVEVTRQGDELMLSVGIASA 122
           K++D+ GI  KV+I W+ +  ++    ++  + G+  +
Sbjct: 116 KLTDVEGIKTKVMI-WVKVTSISTDASKVYFTAGMKKS 152


>pdb|2R00|C Chain C, Crystal Structure Of Aspartate Semialdehyde
          Dehydrogenase Ii Complexed With Asa From Vibrio
          Cholerae
          Length = 336

 Score = 26.9 bits (58), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 15 GARGDNSETAYEVLQEYDFPIGLL 38
          GA G   ET  EVLQE +FP+  L
Sbjct: 10 GATGAVGETMLEVLQEREFPVDEL 33


>pdb|2QZ9|A Chain A, Crystal Structure Of Aspartate Semialdehyde
          Dehydrogenase Ii From Vibrio Cholerae
 pdb|2QZ9|B Chain B, Crystal Structure Of Aspartate Semialdehyde
          Dehydrogenase Ii From Vibrio Cholerae
 pdb|2QZ9|C Chain C, Crystal Structure Of Aspartate Semialdehyde
          Dehydrogenase Ii From Vibrio Cholerae
 pdb|2R00|A Chain A, Crystal Structure Of Aspartate Semialdehyde
          Dehydrogenase Ii Complexed With Asa From Vibrio
          Cholerae
 pdb|2R00|B Chain B, Crystal Structure Of Aspartate Semialdehyde
          Dehydrogenase Ii Complexed With Asa From Vibrio
          Cholerae
          Length = 336

 Score = 26.9 bits (58), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 15 GARGDNSETAYEVLQEYDFPIGLL 38
          GA G   ET  EVLQE +FP+  L
Sbjct: 10 GATGAVGETMLEVLQEREFPVDEL 33


>pdb|3PNL|B Chain B, Crystal Structure Of E.coli Dha Kinase Dhak-dhal Complex
          Length = 211

 Score = 26.6 bits (57), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 63  SFSIESYDLKYKPTITGVITKGKISDLSGISVKVLILWLNIVEVTRQGDELMLSVGIA 120
           S ++E     ++    GVI++GK          V   W+ +VE  RQ  E  LSV +A
Sbjct: 101 SLTLEELYQMFRDGADGVISRGKAEPGDKTMCDV---WVPVVESLRQSSEQNLSVPVA 155


>pdb|2BTD|A Chain A, Crystal Structure Of Dhal From E. Coli
          Length = 210

 Score = 26.6 bits (57), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 63  SFSIESYDLKYKPTITGVITKGKISDLSGISVKVLILWLNIVEVTRQGDELMLSVGIA 120
           S ++E     ++    GVI++GK          V   W+ +VE  RQ  E  LSV +A
Sbjct: 100 SLTLEELYQMFRDGADGVISRGKAEPGDKTMCDV---WVPVVESLRQSSEQNLSVPVA 154


>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
 pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
 pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
           Complex With Nadp
 pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
           Complex With Nadp
          Length = 2512

 Score = 25.8 bits (55), Expect = 10.0,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 11  LVSSGARGDNSETAYEVLQEYDFPIGLLPKSVLGYTIDRTTGKFSVYLEDTC 62
           L+S   + D+S+ A++V    DFP G    SV  Y  D +      YL D C
Sbjct: 829 LISPHIKWDHSQ-AWDVPSAADFPSGSSCSSVAVYKFDVSPESPDHYLVDHC 879


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.139    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,499,598
Number of Sequences: 62578
Number of extensions: 170665
Number of successful extensions: 330
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 7
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)