BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031417
(160 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana
GN=ESD4 PE=1 SV=1
Length = 489
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 66 LASLDFVLRQEARALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMD 116
L +L + EA G + ++ + +PQQ NG+DCG +++KY+D
Sbjct: 407 LNALAKYMGDEANEKSGKKIDANSWDMEFVEDLPQQKNGYDCGMFMLKYID 457
>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis
thaliana GN=ULP1B PE=5 SV=2
Length = 341
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 16/18 (88%)
Query: 99 PQQPNGFDCGYYVMKYMD 116
PQQ NG+DCG +++KY+D
Sbjct: 292 PQQQNGYDCGMFMLKYID 309
>sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ULP1 PE=1 SV=1
Length = 621
Score = 33.9 bits (76), Expect = 0.47, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 66 LASLDFVLRQEARALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYV 111
L L + +E++ G F + PQQPNG+DCG YV
Sbjct: 545 LTDLQKYVMEESKHTIGEDFDLIHLD------CPQQPNGYDCGIYV 584
>sp|P78688|AREA_GIBFU Nitrogen regulatory protein areA OS=Gibberella fujikuroi GN=AREA
PE=3 SV=1
Length = 971
Score = 33.5 bits (75), Expect = 0.54, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 95 QAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHD 129
QAG+PQQ NG + + + +M+N S+V + ++Q +
Sbjct: 329 QAGIPQQSNGSNVPFNIDTFMENDSMVNNGNFQQN 363
>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana
GN=ULP1A PE=2 SV=2
Length = 502
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 98 VPQQPNGFDCGYYVMKYMD 116
+P Q NGFDCG +++KY+D
Sbjct: 452 LPMQRNGFDCGMFMVKYID 470
>sp|Q0WKV8|ULP2A_ARATH Probable ubiquitin-like-specific protease 2A OS=Arabidopsis
thaliana GN=ULP2A PE=2 SV=2
Length = 774
Score = 32.7 bits (73), Expect = 0.86, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 98 VPQQPNGFDCGYYVMKYMD 116
+PQQ N FDCG +++ Y+D
Sbjct: 476 LPQQENSFDCGLFLLHYLD 494
>sp|Q9EQE1|SENP2_RAT Sentrin-specific protease 2 OS=Rattus norvegicus GN=Senp2 PE=1 SV=1
Length = 588
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 98 VPQQPNGFDCGYYVMKYMDNLS 119
+PQQ NG DCG + KY D +S
Sbjct: 538 IPQQLNGSDCGMFTCKYADYIS 559
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3
Length = 589
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 98 VPQQPNGFDCGYYVMKYMDNLS 119
+PQQ NG DCG + KY D +S
Sbjct: 539 IPQQLNGSDCGMFTCKYADYIS 560
>sp|Q5R7K7|SENP2_PONAB Sentrin-specific protease 2 OS=Pongo abelii GN=SENP2 PE=2 SV=1
Length = 589
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 98 VPQQPNGFDCGYYVMKYMDNLS 119
+PQQ NG DCG + KY D +S
Sbjct: 539 IPQQLNGSDCGMFTCKYADYIS 560
>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2
Length = 588
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 98 VPQQPNGFDCGYYVMKYMDNLS 119
+PQQ NG DCG + KY D +S
Sbjct: 538 IPQQLNGSDCGMFTCKYADYIS 559
>sp|Q54XR2|SENP8_DICDI Probable sentrin-specific protease 8 OS=Dictyostelium discoideum
GN=senp8 PE=3 SV=1
Length = 243
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 98 VPQQPNGFDCGYYVMKYMDNL 118
PQQ NG+DCG YV+ ++ L
Sbjct: 165 TPQQQNGYDCGLYVLSIIEEL 185
>sp|Q8L7S0|ULP2B_ARATH Probable ubiquitin-like-specific protease 2B OS=Arabidopsis
thaliana GN=ULP2B PE=2 SV=3
Length = 931
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 98 VPQQPNGFDCGYYVMKYMD 116
+PQQ N FDCG +++ Y++
Sbjct: 568 LPQQENSFDCGLFLLHYLE 586
>sp|Q6P7W0|SENP6_MOUSE Sentrin-specific protease 6 OS=Mus musculus GN=Senp6 PE=1 SV=3
Length = 1132
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 98 VPQQPNGFDCGYYVMKYMDNL 118
VPQQ N DCG YV++Y+++
Sbjct: 1040 VPQQNNFSDCGVYVLQYVESF 1060
>sp|Q9GZR1|SENP6_HUMAN Sentrin-specific protease 6 OS=Homo sapiens GN=SENP6 PE=1 SV=2
Length = 1112
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 98 VPQQPNGFDCGYYVMKYMDNL 118
VPQQ N DCG YV++Y+++
Sbjct: 1021 VPQQNNFSDCGVYVLQYVESF 1041
>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1
Length = 645
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 98 VPQQPNGFDCGYYVMKYMD 116
+PQQ NG DCG + KY D
Sbjct: 595 IPQQMNGSDCGMFACKYAD 613
>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2
Length = 644
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 98 VPQQPNGFDCGYYVMKYMDNLS 119
+PQQ NG DCG + KY D ++
Sbjct: 594 IPQQMNGSDCGMFACKYADCIT 615
>sp|P20614|TIMP1_RABIT Metalloproteinase inhibitor 1 OS=Oryctolagus cuniculus GN=TIMP1
PE=2 SV=2
Length = 207
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 38 LADWSSLNFAQAAGFRDRYMGRLDTCE--KLASLDFVLRQEARALFGNRF---SFFNFQI 92
+ W+SL+F+Q +GF Y D C AS+ L + L+ ++ S FQ
Sbjct: 125 VVPWNSLSFSQRSGFTKTYAAGCDMCTVFACASIPCHLESDTHCLWTDQLLLGSDKGFQS 184
Query: 93 CCQAGVPQQPN 103
A +PQ+P
Sbjct: 185 RHLACLPQEPG 195
>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1
Length = 640
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 98 VPQQPNGFDCGYYVMKYMD 116
+PQQ NG DCG + KY D
Sbjct: 590 IPQQMNGSDCGMFACKYAD 608
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,881,049
Number of Sequences: 539616
Number of extensions: 2039146
Number of successful extensions: 4482
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4465
Number of HSP's gapped (non-prelim): 18
length of query: 160
length of database: 191,569,459
effective HSP length: 108
effective length of query: 52
effective length of database: 133,290,931
effective search space: 6931128412
effective search space used: 6931128412
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)