Query 031417
Match_columns 160
No_of_seqs 114 out of 148
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 22:15:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1th0_A SMT3-, sentrin-specific 99.9 6.6E-26 2.3E-30 183.0 7.7 119 19-145 98-224 (226)
2 2bkr_A Sentrin-specific protea 99.9 4.5E-25 1.5E-29 176.0 6.9 138 7-160 64-209 (212)
3 1euv_A ULP1 protease; SUMO hyd 99.9 1E-24 3.5E-29 175.9 6.5 117 17-157 94-215 (221)
4 2xph_A Sentrin-specific protea 99.9 2E-24 6.7E-29 175.9 7.4 119 19-145 110-236 (238)
5 3eay_A Sentrin-specific protea 99.8 1.1E-20 3.6E-25 163.7 3.2 104 50-160 208-313 (323)
6 2oix_A Xanthomonas outer prote 99.8 4E-20 1.4E-24 146.5 4.2 112 24-160 62-181 (186)
7 4ekf_A Adenain; alpha and beta 26.0 71 0.0024 26.1 4.1 36 92-127 107-142 (204)
8 3zsu_A TLL2057 protein, cyanoq 22.9 63 0.0022 24.5 3.1 22 139-160 53-74 (130)
9 1th0_A SMT3-, sentrin-specific 20.7 53 0.0018 25.6 2.3 16 143-158 206-221 (226)
10 3bqo_A Telomeric repeat-bindin 17.9 90 0.0031 25.6 3.2 51 106-156 63-118 (211)
No 1
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=99.92 E-value=6.6e-26 Score=183.01 Aligned_cols=119 Identities=17% Similarity=0.272 Sum_probs=97.1
Q ss_pred cCCCCCceEEeecccccccchhhhhHHH---HhHhhhhhhccCCCcchHHHHHHHHHHHHHHHhhcCCCcccccceeec-
Q 031417 19 KDVTSPRCWFLPTYYSQAALADWSSLNF---AQAAGFRDRYMGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQICC- 94 (160)
Q Consensus 19 ~d~~~~~~~flpin~~~~~~~~~~~~~~---~~~~~~~d~~~g~~d~~~~l~iL~~yl~~E~~~k~~~~~d~~~w~~~~- 94 (160)
.|+.+-+.||+|||+ ++||+++-+ .+.+.|+||+.+....+ .+.+..|+..|++++.+.+++..+|++..
T Consensus 98 ~~l~~~~~i~iPin~----~~HW~l~vi~~~~~~i~~~DSl~~~~~~~--~~~l~~~l~~e~~~k~~~~~~~~~w~~~~~ 171 (226)
T 1th0_A 98 VNLFEQEIILVPIHR----KVHWSLVVIDLRKKCLKYLDSMGQKGHRI--CEILLQYLQDESKTKRNSDLNLLEWTHHSM 171 (226)
T ss_dssp CCGGGSSEEEEEEEE----TTEEEEEEEETTTTEEEEECTTCCCCHHH--HHHHHHHHHHHHHHHTSCCCCGGGCEEEEC
T ss_pred CCcccCCEEEEeEEe----CcEEEEEEEEcCCCceEEEcCCCCCchHH--HHHHHHHHHHHHHHhcCCCCCcccceeccc
Confidence 355567899999997 689998876 46788999998887654 67889999999998888888888998742
Q ss_pred -cCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCccCchH---HHHHHHHHHhhcc
Q 031417 95 -QAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDH---ARLLLALYLVQSP 145 (160)
Q Consensus 95 -~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~F~q~~---~R~~mv~eiv~~~ 145 (160)
..++|||.||+|||||||+||++++. +.+++|+|.+ +|++|+.||+.+.
T Consensus 172 ~~~~~PqQ~Ng~DCGvfvl~~~~~~~~--~~~~~f~q~dm~~~R~~~~~ei~~~~ 224 (226)
T 1th0_A 172 KPHEIPQQLNGSDCGMFTCKYADYISR--DKPITFTQHQMPLFRKKMVWEILHQQ 224 (226)
T ss_dssp CTTTSCCCCSSSCHHHHHHHHHHHHTT--TCCCCCCGGGHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHhC--CCCCccChhhHHHHHHHHHHHHHhCC
Confidence 46899999999999999999998864 5689999765 5777777776554
No 2
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=99.91 E-value=4.5e-25 Score=176.01 Aligned_cols=138 Identities=17% Similarity=0.179 Sum_probs=96.8
Q ss_pred eccCchhHHhhcc--CCCCCceEEeecccccc---cchhhhhHHHH---hHhhhhhhccCCCcchHHHHHHHHHHHHHHH
Q 031417 7 MYADYKNMKEAEK--DVTSPRCWFLPTYYSQA---ALADWSSLNFA---QAAGFRDRYMGRLDTCEKLASLDFVLRQEAR 78 (160)
Q Consensus 7 ~~~~~~~~~~a~~--d~~~~~~~flpin~~~~---~~~~~~~~~~~---~~~~~~d~~~g~~d~~~~l~iL~~yl~~E~~ 78 (160)
...+|.++++.++ |+.+.++||+|||+|.+ +|+||||+.+. +.+.|+||+.+..... .+.+...+.....
T Consensus 64 ~~~~~~~v~~~~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~~n~~~--~~~l~~~l~~~l~ 141 (212)
T 2bkr_A 64 CTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVH--AKQVAEKLEAFLG 141 (212)
T ss_dssp HCCCHHHHHHHHGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHH--HHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHhcccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCCCCHHH--HHHHHHHHHHHhC
Confidence 4456778888776 88899999999999865 59999998874 5577899998766554 1222233333322
Q ss_pred hhcCCCcccccceeeccCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCccCchHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 031417 79 ALFGNRFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDHARLLLALYLVQSPLNKIRRRLIQEAR 158 (160)
Q Consensus 79 ~k~~~~~d~~~w~~~~~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~F~q~~~R~~mv~eiv~~~v~~mR~~~l~~i~ 158 (160)
.++. .|+. ...++|||.||+|||||||+||++++.+....-.++ ....+.+..++++|++|+++|.
T Consensus 142 ----~~~~--~~~~-~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~~~~~-------~~~~~~~~~i~~~R~~i~~lI~ 207 (212)
T 2bkr_A 142 ----RKGD--KLAF-VEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTES-------LLQLLTPAYITKKRGEWKDLIA 207 (212)
T ss_dssp ----CTTC--CCCE-EECCCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCCC-------HHHHCCHHHHHHHHHHHHHHHH
T ss_pred ----Cccc--cceE-eECCCCCCCCCCcHHHHHHHHHHHHHHHhhhcCccc-------ccccCCHHHHHHHHHHHHHHHH
Confidence 2222 1222 246899999999999999999999988753221121 1233337899999999999998
Q ss_pred hC
Q 031417 159 KL 160 (160)
Q Consensus 159 ~~ 160 (160)
+|
T Consensus 208 ~L 209 (212)
T 2bkr_A 208 TL 209 (212)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 3
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=99.90 E-value=1e-24 Score=175.86 Aligned_cols=117 Identities=21% Similarity=0.365 Sum_probs=90.0
Q ss_pred hccCCCCCceEEeecccccccchhhhhHHH---HhHhhhhhhccCCCcch--HHHHHHHHHHHHHHHhhcCCCcccccce
Q 031417 17 AEKDVTSPRCWFLPTYYSQAALADWSSLNF---AQAAGFRDRYMGRLDTC--EKLASLDFVLRQEARALFGNRFSFFNFQ 91 (160)
Q Consensus 17 a~~d~~~~~~~flpin~~~~~~~~~~~~~~---~~~~~~~d~~~g~~d~~--~~l~iL~~yl~~E~~~k~~~~~d~~~w~ 91 (160)
+.+|+.+.++||+|||++ ++||+++.+ .+.+.|+||+.++.+.. ..++.++.|+.+|++++.+.+|++.
T Consensus 94 ~~~~~~~~~~i~iPin~~---~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~e~~~~~~~~~~~~--- 167 (221)
T 1euv_A 94 KKTQIDKLDKIFTPINLN---QSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLI--- 167 (221)
T ss_dssp GTSCGGGCSEEEEEEEET---TTEEEEEEEETTTTEEEEECSSCCSCCHHHHHHHHHHHHHHHHHTTSSSCTTCEEE---
T ss_pred ccCCcccCCEEEEEEEcC---CCeEEEEEEEcCCCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHHHhcCCCceEe---
Confidence 456888999999999987 467777654 56778999997665543 3457788999999988878887653
Q ss_pred eeccCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCccCchHHHHHHHHHHhhccHHHHHHHHHHHH
Q 031417 92 ICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDHARLLLALYLVQSPLNKIRRRLIQEA 157 (160)
Q Consensus 92 ~~~~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~F~q~~~R~~mv~eiv~~~v~~mR~~~l~~i 157 (160)
..++|||.||+|||||||+||++++ ++.+++|+|. +|+++|++|..+|
T Consensus 168 ---~~~~PqQ~N~~DCGvfv~~~~~~~~--~~~~l~f~~~-------------d~~~~R~~i~~~I 215 (221)
T 1euv_A 168 ---HLDCPQQPNGYDCGIYVCMNTLYGS--ADAPLDFDYK-------------DAIRMRRFIAHLI 215 (221)
T ss_dssp ---EECCCCCSSSSTHHHHHHHHHHHHH--TTCCCCCCHH-------------HHHHHHHHHHHHH
T ss_pred ---ecCCCCCCCCcCHHHHHHHHHHHHh--CCCCCCcCHH-------------HHHHHHHHHHHHH
Confidence 3689999999999999999999886 4568899954 4555555555554
No 4
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=99.90 E-value=2e-24 Score=175.87 Aligned_cols=119 Identities=22% Similarity=0.289 Sum_probs=96.5
Q ss_pred cCCCCCceEEeecccccccchhhhhHHHH---hHhhhhhhccCCCcchHHHHHHHHHHHHHHHhhcCCCcccccceee--
Q 031417 19 KDVTSPRCWFLPTYYSQAALADWSSLNFA---QAAGFRDRYMGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQIC-- 93 (160)
Q Consensus 19 ~d~~~~~~~flpin~~~~~~~~~~~~~~~---~~~~~~d~~~g~~d~~~~l~iL~~yl~~E~~~k~~~~~d~~~w~~~-- 93 (160)
.|+.+-+.||+|||. |+||+++-+. +.+.|+||+.+..... .+.|..|+..|++.+.+.+++..+|++.
T Consensus 110 ~~l~~~~~i~iPin~----~~HW~L~vi~~~~~~i~~~DSl~~~~~~~--~~~l~~~L~~e~~~k~~~~~~~~~w~~~~~ 183 (238)
T 2xph_A 110 VDVFSVDILLVPIHL----GVHWCLAVVDFRKKNITYYDSMGGINNEA--CRILLQYLKQESIDKKRKEFDTNGWQLFSK 183 (238)
T ss_dssp CCGGGSSEEEEEEEE----TTEEEEEEEETTTTEEEEECTTCCCCHHH--HHHHHHHHHHHHHHHHCSCCCCTTCEEEEC
T ss_pred CCcccCCEEEEcccC----CCceEEEEEEcccceEEEeecccCCCHHH--HHHHHHHHHHHHHHhcCCCcCcccceeccc
Confidence 355556899999984 6888887664 5678999998877654 5788899999999988888988899874
Q ss_pred ccCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCccCchH---HHHHHHHHHhhcc
Q 031417 94 CQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQHDSDH---ARLLLALYLVQSP 145 (160)
Q Consensus 94 ~~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~F~q~~---~R~~mv~eiv~~~ 145 (160)
...++|||.||+|||||||+||++++. +.+++|+|.+ +|++|+.||+++.
T Consensus 184 ~~~~~PqQ~Ng~DCGvfvl~~~e~~~~--~~~~~f~q~dm~~~R~~m~~eil~~~ 236 (238)
T 2xph_A 184 KSQEIPQQMNGSDCGMFACKYADCITK--DRPINFTQQHMPYFRKRMVWEILHRK 236 (238)
T ss_dssp CSSSSCCCSBGGGHHHHHHHHHHHHHT--TCCCCCCGGGHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhc--CCCCCcChhhHHHHHHHHHHHHHhCC
Confidence 357899999999999999999998874 5688999765 5777777777654
No 5
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=99.80 E-value=1.1e-20 Score=163.66 Aligned_cols=104 Identities=20% Similarity=0.257 Sum_probs=78.8
Q ss_pred hhhhhhccCCCcchHHHHHHHHHHHHHHHhhcCC--CcccccceeeccCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCc
Q 031417 50 AGFRDRYMGRLDTCEKLASLDFVLRQEARALFGN--RFSFFNFQICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQ 127 (160)
Q Consensus 50 ~~~~d~~~g~~d~~~~l~iL~~yl~~E~~~k~~~--~~d~~~w~~~~~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~ 127 (160)
+-|+||+.|..+.- .++.|+.||.+|++++.+. +|+..+|.... ..+|||.||+|||||||+||++++. +.+++
T Consensus 208 Il~lDSL~~~~~~~-~~~~Lr~YL~~E~~~k~~~~~~f~~~~~~~~~-~~~P~Q~N~~DCGvfvl~~~e~~~~--~~~~~ 283 (323)
T 3eay_A 208 ILILDSLKAASVQN-TVQNLREYLEVEWEVKLKTHRQFSKTNMVDLC-PKVPKQDNSSDCGVYLLQYVESFFK--DPIVN 283 (323)
T ss_dssp EEEECSSCCSSHHH-HHHHHHHHHHHHHHHHHSSCCCCCTTTSCEEC-CBCCCCCSTTCHHHHHHHHHHHHHH--SCCCC
T ss_pred EEEEECCCCCCcch-HHHHHHHHHHHHHHhhcCCCcCCCHhHceecc-CCCCCcCCCCcHHHHHHHHHHHHHh--CCccc
Confidence 68899998865332 3689999999999988654 45545666544 4699999999999999999998874 45677
Q ss_pred cCchHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 031417 128 HDSDHARLLLALYLVQSPLNKIRRRLIQEARKL 160 (160)
Q Consensus 128 F~q~~~R~~mv~eiv~~~v~~mR~~~l~~i~~~ 160 (160)
|+++-. ...-+.+..+..+|++|..+|.+|
T Consensus 284 f~~~~~---~~~wf~~~~i~~kR~ei~~LI~~L 313 (323)
T 3eay_A 284 FELPIH---LEKWFPRHVIKTKREDIRELILKL 313 (323)
T ss_dssp CCSSCB---CTTSSCHHHHHTHHHHHHHHHHHH
T ss_pred cccccc---cccCCCHHHHHHHHHHHHHHHHHH
Confidence 775421 122234788999999999999875
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.79 E-value=4e-20 Score=146.55 Aligned_cols=112 Identities=18% Similarity=0.147 Sum_probs=73.2
Q ss_pred CceEEeecccccccchhhhhHHHHh---Hh---hhhhhccCCCcchHHHHHHHHHHHHHHHhhcCCCcccccceeeccCC
Q 031417 24 PRCWFLPTYYSQAALADWSSLNFAQ---AA---GFRDRYMGRLDTCEKLASLDFVLRQEARALFGNRFSFFNFQICCQAG 97 (160)
Q Consensus 24 ~~~~flpin~~~~~~~~~~~~~~~~---~~---~~~d~~~g~~d~~~~l~iL~~yl~~E~~~k~~~~~d~~~w~~~~~~~ 97 (160)
.+.||+|||++ |+||||+.++. .+ -|+||+.+...... .+.+..++..+.+.. .+ ...+
T Consensus 62 ~~~i~iPin~~---~~HWsLlvi~~~~~~~~~~~~~DSl~~~~~~~~-------~l~~~l~~~l~~~~~--~~---~~~~ 126 (186)
T 2oix_A 62 PPIVFLPINQP---NAHWSLLVVDRRNKDAVAAYHYDSMAQKDPQQR-------YLADMAAYHLGLDYQ--QT---HEMP 126 (186)
T ss_dssp CSEEEEEEEET---TTEEEEEEEECSSTTSCEEEEECCCSSCCHHHH-------HHHHHHHHHTTCCGG--GC---EEEC
T ss_pred cCEEEEEEeCC---CCccEEEEEECCCCeeeeeEEEcCCCCCCHHHH-------HHHHHHHHHhCCCcc--cc---ccCC
Confidence 79999999994 78999887754 45 78999987443321 123333344444432 11 2467
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhhh--cCCCccCchHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 031417 98 VPQQPNGFDCGYYVMKYMDNLSIVV--HDSYQHDSDHARLLLALYLVQSPLNKIRRRLIQEARKL 160 (160)
Q Consensus 98 ~PqQ~Ng~DCGVfV~~~~~~i~~~~--~~~~~F~q~~~R~~mv~eiv~~~v~~mR~~~l~~i~~~ 160 (160)
+|||.||+|||||||+||++++... +.+..++ .+-...+.++|++|..+|+++
T Consensus 127 ~PqQ~Ng~DCGvfv~~~~~~l~~~~~~~~~~~~~----------~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 127 IAIQSDGYSAGDHVLTGIEVLAHRVLDGTFDYAG----------GRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp BCCCC--CCHHHHHHHHHHHHHHHHHHTCTTSTT----------TTCBTTCCCCHHHHHHHHHCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhcCccCCC----------cCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998653 2111111 011567788888888888764
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=25.98 E-value=71 Score=26.13 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=29.3
Q ss_pred eeccCCCCCCCCCCCchHHHHHHHHHHhhhhcCCCc
Q 031417 92 ICCQAGVPQQPNGFDCGYYVMKYMDNLSIVVHDSYQ 127 (160)
Q Consensus 92 ~~~~~~~PqQ~Ng~DCGVfV~~~~~~i~~~~~~~~~ 127 (160)
+....++=|=+++--||.|-|.|..+...+.+.|+.
T Consensus 107 LvkstqsVQcp~SaACGLFC~lFL~aF~~~p~~pm~ 142 (204)
T 4ekf_A 107 LEKSTQSVQGPNSAAAGLFCCMFLHAFANWPQTPMD 142 (204)
T ss_dssp EEECCSBCSCTTCCCHHHHHHHHHHHHHHCTTSCSS
T ss_pred EEeccccccCcCchhHHHHHHHHHHHHHhCCCCCCC
Confidence 444566778889999999999999988888777665
No 8
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=22.88 E-value=63 Score=24.50 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=18.3
Q ss_pred HHHhhccHHHHHHHHHHHHHhC
Q 031417 139 LYLVQSPLNKIRRRLIQEARKL 160 (160)
Q Consensus 139 ~eiv~~~v~~mR~~~l~~i~~~ 160 (160)
+-+++|.|..+|++|..+++.|
T Consensus 53 Rn~IhGPlg~lr~~m~~l~~~L 74 (130)
T 3zsu_A 53 RNIMRGPLGEMLMDMRALNRNL 74 (130)
T ss_dssp HHHHHTHHHHHHHHHHHHHHTS
T ss_pred HHHHhchHHHHHHHHHHHHHhc
Confidence 5567899999999999987754
No 9
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=20.70 E-value=53 Score=25.57 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=14.2
Q ss_pred hccHHHHHHHHHHHHH
Q 031417 143 QSPLNKIRRRLIQEAR 158 (160)
Q Consensus 143 ~~~v~~mR~~~l~~i~ 158 (160)
+.+|+.+|++|+.+|-
T Consensus 206 q~dm~~~R~~~~~ei~ 221 (226)
T 1th0_A 206 QHQMPLFRKKMVWEIL 221 (226)
T ss_dssp GGGHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 6899999999999874
No 10
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=17.93 E-value=90 Score=25.61 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=38.5
Q ss_pred CchHHHHHHHHHHhhhhcCCCccCchH-----HHHHHHHHHhhccHHHHHHHHHHH
Q 031417 106 DCGYYVMKYMDNLSIVVHDSYQHDSDH-----ARLLLALYLVQSPLNKIRRRLIQE 156 (160)
Q Consensus 106 DCGVfV~~~~~~i~~~~~~~~~F~q~~-----~R~~mv~eiv~~~v~~mR~~~l~~ 156 (160)
+|-+|+|+|.-.|..+....-+|+.+. .=-.++++.+...++.+=+++=.+
T Consensus 63 ~k~i~icQfL~RI~eG~~LD~~Fd~d~~lTPLESAl~v~~~I~~e~~~lheei~~L 118 (211)
T 3bqo_A 63 LRTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNL 118 (211)
T ss_dssp HHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHTTSCSCCCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 899999999999998888888899765 456677777766666555544333
Done!