BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031418
         (160 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent
           Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In
           Complex With Sto-609
          Length = 298

 Score = 27.7 bits (60), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 17/96 (17%)

Query: 7   RGNSNPAATLAALVSKRSRF--QDELRNIENQVY------ELETSYL---QD----IGQF 51
           +G      TL  L   ++RF  QD ++ IE   Y      +++ S L   +D    I  F
Sbjct: 122 QGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADF 181

Query: 52  G--NAFKGFEGFLSSGKNTSNFKRPRKLQPEDRIFS 85
           G  N FKG +  LS+   T  F  P  L    +IFS
Sbjct: 182 GVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFS 217


>pdb|1Y1F|X Chain X, Human Formylglycine Generating Enzyme With Cysteine
          Sulfenic Acid
 pdb|1Y1J|X Chain X, Human Formylglycine Generating Enzyme, Sulfonic
          AcidDESULFURATED FORM
          Length = 311

 Score = 26.2 bits (56), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 29 ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63
          E+ N E + +   T YL +  +FG++F  FEG LS
Sbjct: 58 EVSNTEFEKFVNSTGYLTEAEKFGDSFV-FEGMLS 91


>pdb|1Y1E|X Chain X, Human Formylglycine Generating Enzyme
 pdb|1Y1H|X Chain X, Human Formylglycine Generating Enzyme, Oxidised Cys
          Refined As Hydroperoxide
 pdb|1Y1I|X Chain X, Hyuman Formylglycine Generating Enzyme, Reduced Form
          Length = 311

 Score = 26.2 bits (56), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 29 ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63
          E+ N E + +   T YL +  +FG++F  FEG LS
Sbjct: 58 EVSNTEFEKFVNSTGYLTEAEKFGDSFV-FEGMLS 91


>pdb|1Y1G|X Chain X, Human Formylglycine Generating Enzyme, Double Sulfonic
          Acid Form
 pdb|1Z70|X Chain X, 1.15a Resolution Structure Of The Formylglycine
          Generating Enzyme Fge
          Length = 311

 Score = 26.2 bits (56), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 29 ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63
          E+ N E + +   T YL +  +FG++F  FEG LS
Sbjct: 58 EVSNTEFEKFVNSTGYLTEAEKFGDSFV-FEGMLS 91


>pdb|2AFT|X Chain X, Formylglycine Generating Enzyme C336s Mutant
 pdb|2AIJ|X Chain X, Formylglycine Generating Enzyme C336s Mutant Covalently
          Bound To Substrate Peptide Ctpsr
 pdb|2AIK|X Chain X, Formylglycine Generating Enzyme C336s Mutant Covalently
          Bound To Substrate Peptide Lctpsra
 pdb|2HI8|X Chain X, Human Formylglycine Generating Enzyme, C336s Mutant,
          Bromide Co- Crystallization
 pdb|2HIB|X Chain X, Human Formylglycine Generating Enzyme, C336s Mutant,
          Iodide Co- Crystallization
          Length = 286

 Score = 26.2 bits (56), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 29 ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63
          E+ N E + +   T YL +  +FG++F  FEG LS
Sbjct: 45 EVSNTEFEKFVNSTGYLTEAEKFGDSFV-FEGMLS 78


>pdb|2AFY|X Chain X, Formylglycine Generating Enzyme C341s Mutant
          Length = 286

 Score = 26.2 bits (56), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 29 ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63
          E+ N E + +   T YL +  +FG++F  FEG LS
Sbjct: 45 EVSNTEFEKFVNSTGYLTEAEKFGDSFV-FEGMLS 78


>pdb|2AII|X Chain X, Wild-Type Formylglycine Generating Enzyme Reacted With
          Iodoacetamide
          Length = 286

 Score = 26.2 bits (56), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 29 ELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63
          E+ N E + +   T YL +  +FG++F  FEG LS
Sbjct: 45 EVSNTEFEKFVNSTGYLTEAEKFGDSFV-FEGMLS 78


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.131    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,621,474
Number of Sequences: 62578
Number of extensions: 196967
Number of successful extensions: 345
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 35
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)