Query 031418
Match_columns 160
No_of_seqs 110 out of 170
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 22:17:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ra3_B P2F; coiled coil domain 72.2 3.9 0.00013 23.7 3.0 25 17-41 3-27 (28)
2 4abm_A Charged multivesicular 66.6 7.8 0.00027 26.9 4.2 29 15-43 46-74 (79)
3 3he4_A Synzip6; heterodimeric 64.7 18 0.00061 23.8 5.4 30 14-43 20-53 (56)
4 2pnv_A Small conductance calci 60.7 21 0.00072 22.5 5.0 34 10-43 5-38 (43)
5 1kd8_A GABH AIV, GCN4 acid bas 58.0 25 0.00086 21.6 4.9 30 12-41 6-35 (36)
6 2zvf_A Alanyl-tRNA synthetase; 57.7 22 0.00077 26.2 5.7 38 10-47 28-66 (171)
7 2fxo_A Myosin heavy chain, car 57.3 16 0.00054 26.9 4.7 29 15-43 98-126 (129)
8 3ljm_A Coil Ser L9C; de novo d 54.6 25 0.00086 20.7 4.3 26 17-42 4-29 (31)
9 1a93_B MAX protein, coiled coi 52.5 31 0.0011 20.9 4.6 31 11-41 4-34 (34)
10 2l5g_B Putative uncharacterize 51.0 23 0.00077 22.5 4.0 24 18-41 6-29 (42)
11 4etp_A Kinesin-like protein KA 49.7 27 0.00093 30.3 5.7 39 10-48 6-44 (403)
12 2akf_A Coronin-1A; coiled coil 49.6 36 0.0012 20.3 4.4 27 12-38 4-30 (32)
13 1gp8_A Protein (scaffolding pr 48.0 9.8 0.00034 23.9 1.9 13 27-39 7-19 (40)
14 3c3g_A Alpha/beta peptide with 44.8 32 0.0011 20.7 3.8 24 12-35 5-28 (33)
15 2oqq_A Transcription factor HY 43.5 60 0.0021 20.5 5.1 29 14-42 3-31 (42)
16 1l8d_A DNA double-strand break 42.6 56 0.0019 22.6 5.5 33 12-44 69-101 (112)
17 3u06_A Protein claret segregat 42.1 41 0.0014 29.4 5.7 36 11-46 7-42 (412)
18 1ses_A Seryl-tRNA synthetase; 42.0 43 0.0015 29.2 5.7 42 14-55 64-105 (421)
19 1l8d_A DNA double-strand break 41.3 50 0.0017 22.9 5.1 44 12-56 15-58 (112)
20 3nmd_A CGMP dependent protein 40.3 57 0.002 22.6 5.1 30 13-42 21-54 (72)
21 2bni_A General control protein 39.7 43 0.0015 20.3 3.8 24 12-35 6-29 (34)
22 2wuj_A Septum site-determining 39.6 23 0.0008 22.8 2.8 25 13-37 33-57 (57)
23 2r2v_A GCN4 leucine zipper; co 39.1 53 0.0018 19.9 4.1 24 12-35 6-29 (34)
24 2eqb_B RAB guanine nucleotide 38.9 73 0.0025 23.2 5.7 38 12-49 31-68 (97)
25 2zqm_A Prefoldin beta subunit 38.2 58 0.002 22.5 5.0 29 15-43 71-99 (117)
26 1gmj_A ATPase inhibitor; coile 38.0 60 0.002 23.1 5.0 29 15-43 38-66 (84)
27 3hnw_A Uncharacterized protein 37.9 41 0.0014 25.3 4.4 24 20-43 109-132 (138)
28 2zqm_A Prefoldin beta subunit 37.2 81 0.0028 21.7 5.6 28 13-40 83-110 (117)
29 3hnw_A Uncharacterized protein 37.2 64 0.0022 24.2 5.4 30 11-40 65-94 (138)
30 1wle_A Seryl-tRNA synthetase; 36.6 56 0.0019 29.4 5.7 41 15-55 117-157 (501)
31 2dq0_A Seryl-tRNA synthetase; 36.4 48 0.0016 29.2 5.2 38 17-54 72-109 (455)
32 1zme_C Proline utilization tra 36.2 45 0.0015 20.9 3.8 24 14-37 44-67 (70)
33 3q8t_A Beclin-1; autophagy, AT 36.2 77 0.0026 22.4 5.4 38 11-48 22-62 (96)
34 1wt6_A Myotonin-protein kinase 35.9 53 0.0018 23.3 4.4 29 12-40 43-71 (81)
35 1fxk_A Prefoldin; archaeal pro 35.5 48 0.0016 22.6 4.1 30 14-43 65-94 (107)
36 3etw_A Adhesin A; antiparallel 35.2 59 0.002 24.4 4.8 28 16-43 77-104 (119)
37 4abm_A Charged multivesicular 34.3 26 0.00089 24.2 2.5 21 21-41 59-79 (79)
38 1a92_A Delta antigen; leucine 33.6 29 0.00098 22.7 2.5 32 20-55 13-44 (50)
39 2yy0_A C-MYC-binding protein; 33.4 41 0.0014 21.6 3.2 26 12-37 24-49 (53)
40 3qne_A Seryl-tRNA synthetase, 33.1 57 0.002 29.4 5.2 39 17-55 74-112 (485)
41 3c3f_A Alpha/beta peptide with 32.7 65 0.0022 19.5 3.8 24 12-35 6-29 (34)
42 1fxk_A Prefoldin; archaeal pro 32.7 1.1E+02 0.0037 20.7 5.6 27 13-39 78-104 (107)
43 1nkp_B MAX protein, MYC proto- 31.3 41 0.0014 22.6 3.1 28 15-42 48-75 (83)
44 1rtm_1 Mannose-binding protein 31.2 68 0.0023 22.5 4.5 25 12-36 2-26 (149)
45 1j1d_B Troponin T, TNT; THIN f 30.5 70 0.0024 23.4 4.5 27 18-44 46-72 (106)
46 3viq_A SWI5-dependent recombin 30.5 65 0.0022 24.0 4.4 26 18-43 4-29 (122)
47 3lss_A Seryl-tRNA synthetase; 30.0 57 0.002 29.4 4.7 41 15-55 100-145 (484)
48 3s4r_A Vimentin; alpha-helix, 29.2 78 0.0027 22.2 4.4 31 11-41 60-90 (93)
49 1gk7_A Vimentin; intermediate 29.1 81 0.0028 19.1 3.9 28 11-38 10-37 (39)
50 2lxm_B Charged multivesicular 28.7 31 0.0011 23.0 2.1 25 24-48 23-48 (57)
51 2q6q_A Spindle POLE BODY compo 28.0 1.3E+02 0.0043 21.0 5.1 36 12-47 29-64 (74)
52 3qao_A LMO0526 protein, MERR-l 27.6 78 0.0027 25.4 4.7 31 12-42 81-111 (249)
53 1ytz_T Troponin T; muscle, THI 27.4 74 0.0025 23.3 4.1 26 19-44 47-72 (107)
54 3cve_A Homer protein homolog 1 27.2 94 0.0032 21.4 4.4 29 11-39 4-32 (72)
55 1buu_A Protein (mannose-bindin 26.6 80 0.0027 22.9 4.3 25 11-35 20-44 (168)
56 1uo4_A General control protein 26.5 96 0.0033 18.8 3.8 23 12-34 6-28 (34)
57 1r8d_A Transcription activator 26.4 96 0.0033 21.3 4.5 23 19-41 80-102 (109)
58 1ic2_A Tropomyosin alpha chain 26.3 1.5E+02 0.0051 19.9 5.5 29 14-42 27-55 (81)
59 3u06_A Protein claret segregat 26.2 98 0.0034 27.0 5.4 33 11-43 14-46 (412)
60 3gp4_A Transcriptional regulat 26.2 1.2E+02 0.0042 22.1 5.3 6 32-37 106-111 (142)
61 1yhn_B RILP, RAB interacting l 26.0 95 0.0033 21.2 4.1 36 14-49 3-38 (65)
62 2aze_B Transcription factor E2 25.7 1.2E+02 0.0041 21.8 5.0 32 11-42 10-41 (106)
63 3gpv_A Transcriptional regulat 25.2 94 0.0032 22.9 4.4 26 16-41 97-122 (148)
64 2oxj_A Hybrid alpha/beta pepti 25.0 1.1E+02 0.0036 18.6 3.8 24 12-35 6-29 (34)
65 3kin_B Kinesin heavy chain; mo 24.7 1.3E+02 0.0043 21.8 5.0 26 13-38 88-113 (117)
66 1txp_A HnRNP C, heterogeneous 24.4 1.1E+02 0.0037 17.8 3.6 22 14-35 3-24 (28)
67 2wq1_A General control protein 23.9 1.3E+02 0.0043 18.1 4.5 24 12-35 5-28 (33)
68 2avr_X Adhesion A; antiparalle 23.8 22 0.00077 26.8 0.7 47 12-63 39-85 (119)
69 3u1c_A Tropomyosin alpha-1 cha 23.8 1.7E+02 0.006 20.5 5.5 30 13-42 29-58 (101)
70 1kd8_B GABH BLL, GCN4 acid bas 23.5 1.3E+02 0.0046 18.3 4.5 26 12-37 6-31 (36)
71 2z5i_A TM, general control pro 23.4 1.1E+02 0.0037 19.5 3.9 21 25-45 16-36 (52)
72 3viq_B Mating-type switching p 23.3 91 0.0031 22.1 3.8 24 12-35 6-29 (85)
73 1yzm_A FYVE-finger-containing 23.0 57 0.0019 21.2 2.5 20 24-43 31-50 (51)
74 3rrk_A V-type ATPase 116 kDa s 22.7 1.2E+02 0.0042 24.7 5.1 29 12-40 104-135 (357)
75 2yf2_A C4B binding protein; im 22.7 1.8E+02 0.0061 19.6 5.0 36 12-48 26-61 (65)
76 3swk_A Vimentin; cytoskeleton, 22.7 1.5E+02 0.0053 20.4 4.9 37 11-47 4-40 (86)
77 1z0k_B FYVE-finger-containing 22.5 44 0.0015 23.0 1.9 20 24-43 49-68 (69)
78 2xu6_A MDV1 coiled coil; prote 22.5 1.8E+02 0.0061 20.2 5.1 35 12-46 26-60 (72)
79 1aq5_A Matrilin-1, CMP, cartil 22.2 1.6E+02 0.0055 18.8 4.5 24 14-37 23-46 (47)
80 2fxo_A Myosin heavy chain, car 21.9 1.3E+02 0.0043 21.9 4.5 31 13-43 68-98 (129)
81 3hh0_A Transcriptional regulat 21.8 1.3E+02 0.0046 22.0 4.7 28 13-40 79-106 (146)
82 2vz4_A Tipal, HTH-type transcr 21.8 1.3E+02 0.0046 20.6 4.5 23 19-41 79-101 (108)
83 4dac_A Computationally designe 21.7 1.1E+02 0.0036 17.6 3.2 19 25-43 5-23 (28)
84 1fxk_C Protein (prefoldin); ar 21.3 98 0.0033 22.1 3.8 30 13-42 14-43 (133)
85 1fmh_A General control protein 21.3 1E+02 0.0036 18.2 3.2 19 25-43 5-23 (33)
86 3uux_B Mitochondrial division 21.2 1.7E+02 0.0059 24.4 5.7 34 12-45 182-215 (242)
87 4e61_A Protein BIM1; EB1-like 21.0 2.2E+02 0.0076 20.9 5.7 31 12-42 9-39 (106)
88 2wg5_A General control protein 20.7 93 0.0032 22.2 3.5 42 14-60 7-49 (109)
89 2ocy_A RAB guanine nucleotide 20.7 1.6E+02 0.0056 22.8 5.2 38 12-49 63-100 (154)
90 4dnd_A Syntaxin-10, SYN10; str 20.7 1.3E+02 0.0043 22.4 4.4 25 19-43 65-89 (130)
91 2w6a_A ARF GTPase-activating p 20.7 2E+02 0.007 19.4 5.1 31 13-43 26-56 (63)
92 3etw_A Adhesin A; antiparallel 20.5 27 0.00091 26.3 0.6 48 11-63 38-85 (119)
93 3gp4_A Transcriptional regulat 20.5 1.5E+02 0.005 21.7 4.6 21 19-39 86-106 (142)
94 1q08_A Zn(II)-responsive regul 20.2 1.9E+02 0.0067 19.0 5.2 29 14-42 39-67 (99)
No 1
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=72.18 E-value=3.9 Score=23.72 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 17 AALVSKRSRFQDELRNIENQVYELE 41 (160)
Q Consensus 17 ~~Ll~kRk~Le~~L~~LE~qIYd~E 41 (160)
+.|-++-..|..+++.||-+|..+|
T Consensus 3 rrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 4455667778899999999998887
No 2
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=66.58 E-value=7.8 Score=26.93 Aligned_cols=29 Identities=14% Similarity=0.384 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031418 15 TLAALVSKRSRFQDELRNIENQVYELETS 43 (160)
Q Consensus 15 ~L~~Ll~kRk~Le~~L~~LE~qIYd~Ets 43 (160)
.-...|++|+-.|.+|.+++.+|..+|..
T Consensus 46 ~Al~aLkrKK~~E~qL~q~~~ql~~LE~q 74 (79)
T 4abm_A 46 AALQALKRKKRYEKQLAQIDGTLSTIEFQ 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33446777778999999999999998874
No 3
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=64.68 E-value=18 Score=23.80 Aligned_cols=30 Identities=23% Similarity=0.516 Sum_probs=20.0
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Q 031418 14 ATLAALVS----KRSRFQDELRNIENQVYELETS 43 (160)
Q Consensus 14 ~~L~~Ll~----kRk~Le~~L~~LE~qIYd~Ets 43 (160)
++|..+++ .-..|+++++.||+.|.++|..
T Consensus 20 aklenivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 44544444 3456788888888888888754
No 4
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=60.74 E-value=21 Score=22.47 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031418 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (160)
Q Consensus 10 ~~~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~Ets 43 (160)
+-.-..+.++-.+.+.||++|..||.++-.+...
T Consensus 5 n~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 5 NIMYDMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344567788899999999999999998876543
No 5
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=58.03 E-value=25 Score=21.62 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQVYELE 41 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~E 41 (160)
+..+..+|+.++..|+.+...|..-+-..|
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 567788899999999999999988776655
No 6
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=57.73 E-value=22 Score=26.24 Aligned_cols=38 Identities=8% Similarity=0.207 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhh
Q 031418 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETS-YLQD 47 (160)
Q Consensus 10 ~~~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~Ets-YLee 47 (160)
.++...+..|+...++|+++|..|..++...+.. +++.
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~~ 66 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMER 66 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5889999999999999999999999999988754 4443
No 7
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=57.27 E-value=16 Score=26.93 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031418 15 TLAALVSKRSRFQDELRNIENQVYELETS 43 (160)
Q Consensus 15 ~L~~Ll~kRk~Le~~L~~LE~qIYd~Ets 43 (160)
....|...|++|+.++..|+++|-+.|.+
T Consensus 98 ~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 98 MNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777777777777777777777654
No 8
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=54.60 E-value=25 Score=20.68 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 17 AALVSKRSRFQDELRNIENQVYELET 42 (160)
Q Consensus 17 ~~Ll~kRk~Le~~L~~LE~qIYd~Et 42 (160)
..|-++=..|+..|..||+.+..+|.
T Consensus 4 ealekkcaalesklqalekklealeh 29 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALEH 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556667788888888888877763
No 9
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=52.48 E-value=31 Score=20.92 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 11 NPAATLAALVSKRSRFQDELRNIENQVYELE 41 (160)
Q Consensus 11 ~~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~E 41 (160)
..+.+-.+..+.=..|.++-..||.||..+|
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 3566666777777778888888888888766
No 10
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=50.99 E-value=23 Score=22.49 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 18 ALVSKRSRFQDELRNIENQVYELE 41 (160)
Q Consensus 18 ~Ll~kRk~Le~~L~~LE~qIYd~E 41 (160)
+||++=.+++.+++..|++|..+-
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lq 29 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLK 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888899999999999998764
No 11
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=49.72 E-value=27 Score=30.29 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 031418 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDI 48 (160)
Q Consensus 10 ~~~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT 48 (160)
..+..+|..|.+++++|+++++.++.++-+++..|.++.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999999999999888888887754
No 12
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=49.58 E-value=36 Score=20.26 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQVY 38 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~qIY 38 (160)
+..+|+.|..--++|++.+..||..+-
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888999999999998764
No 13
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=48.03 E-value=9.8 Score=23.94 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q 031418 27 QDELRNIENQVYE 39 (160)
Q Consensus 27 e~~L~~LE~qIYd 39 (160)
.+.+..||+|||-
T Consensus 7 ~d~I~aiEQqiyv 19 (40)
T 1gp8_A 7 AANKDAIRKQMDA 19 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4678999999984
No 14
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=44.76 E-value=32 Score=20.75 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 12 PAATLAALVSKRSRFQDELRNIEN 35 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~ 35 (160)
+..++.+||.++..|+.+++.|-.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 556788999999999999888754
No 15
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=43.47 E-value=60 Score=20.51 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 14 ATLAALVSKRSRFQDELRNIENQVYELET 42 (160)
Q Consensus 14 ~~L~~Ll~kRk~Le~~L~~LE~qIYd~Et 42 (160)
+.|.+|-.+.+.|+...+.||..|--++.
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888999999999999998876553
No 16
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=42.65 E-value=56 Score=22.63 Aligned_cols=33 Identities=9% Similarity=0.144 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsY 44 (160)
...++..+...-..|..++..|+.+|..++..|
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666667777777777777666655
No 17
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=42.13 E-value=41 Score=29.35 Aligned_cols=36 Identities=6% Similarity=0.036 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031418 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (160)
Q Consensus 11 ~~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLe 46 (160)
.+..+|.+|.+++++|++++++++.++..++..|++
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777666666666655555544
No 18
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=41.96 E-value=43 Score=29.17 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcee
Q 031418 14 ATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (160)
Q Consensus 14 ~~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNII 55 (160)
....+|+++-++|.++|..||.++...|....+.-....||+
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 105 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPP 105 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 455678888889999999999999999988876544455654
No 19
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=41.30 E-value=50 Score=22.86 Aligned_cols=44 Identities=7% Similarity=0.198 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCceec
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFK 56 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNIIK 56 (160)
+..+|..|...+..+..++..+++.|..++.. -...+.||..+.
T Consensus 15 ~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~-g~~CPvCgs~l~ 58 (112)
T 1l8d_A 15 IEEERNEITQRIGELKNKIGDLKTAIEELKKA-KGKCPVCGRELT 58 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-SEECTTTCCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCcCC
Confidence 45566666666667777777777776665542 223566777654
No 20
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=40.34 E-value=57 Score=22.60 Aligned_cols=30 Identities=7% Similarity=0.085 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 031418 13 AATLAALVSKRSR----FQDELRNIENQVYELET 42 (160)
Q Consensus 13 ~~~L~~Ll~kRk~----Le~~L~~LE~qIYd~Et 42 (160)
-.+|+.++++|.+ .+..++.||++|-.+|.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~ 54 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777766543 55666677777666554
No 21
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=39.66 E-value=43 Score=20.33 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 12 PAATLAALVSKRSRFQDELRNIEN 35 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~ 35 (160)
+..++.+||.++..|+.+++.|-.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 567888999999999999888754
No 22
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=39.56 E-value=23 Score=22.83 Aligned_cols=25 Identities=4% Similarity=0.375 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 13 AATLAALVSKRSRFQDELRNIENQV 37 (160)
Q Consensus 13 ~~~L~~Ll~kRk~Le~~L~~LE~qI 37 (160)
...+..|++....|.++|..|+.+|
T Consensus 33 ~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 33 RKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455556666666666666665543
No 23
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=39.13 E-value=53 Score=19.93 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 12 PAATLAALVSKRSRFQDELRNIEN 35 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~ 35 (160)
+..++.+|+.++..|+.+++.|-+
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456778888888888888887754
No 24
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.93 E-value=73 Score=23.19 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIG 49 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~ 49 (160)
+...|..-..+|...+..+.+||.++-++=++.|++-+
T Consensus 31 L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN 68 (97)
T 2eqb_B 31 LREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEAN 68 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777788889999999999999999888888643
No 25
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=38.20 E-value=58 Score=22.47 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031418 15 TLAALVSKRSRFQDELRNIENQVYELETS 43 (160)
Q Consensus 15 ~L~~Ll~kRk~Le~~L~~LE~qIYd~Ets 43 (160)
.+..|-.+++.|+..+..||.++-.++..
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~ 99 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEK 99 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555544
No 26
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=37.96 E-value=60 Score=23.14 Aligned_cols=29 Identities=10% Similarity=0.231 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031418 15 TLAALVSKRSRFQDELRNIENQVYELETS 43 (160)
Q Consensus 15 ~L~~Ll~kRk~Le~~L~~LE~qIYd~Ets 43 (160)
+..+|.+-|++|+++|..-.++|-++|-.
T Consensus 38 ekEqL~~LKkkl~~el~~h~~ei~~le~~ 66 (84)
T 1gmj_A 38 AKEQLAALKKHKENEISHHAKEIERLQKE 66 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777777777666643
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=37.93 E-value=41 Score=25.34 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031418 20 VSKRSRFQDELRNIENQVYELETS 43 (160)
Q Consensus 20 l~kRk~Le~~L~~LE~qIYd~Ets 43 (160)
.+...+|.+++..|+.+|-.+|++
T Consensus 109 ~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 109 AKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555543
No 28
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.21 E-value=81 Score=21.68 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 13 AATLAALVSKRSRFQDELRNIENQVYEL 40 (160)
Q Consensus 13 ~~~L~~Ll~kRk~Le~~L~~LE~qIYd~ 40 (160)
...+..|-++...++.++..++.+||.+
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566666666666666543
No 29
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=37.18 E-value=64 Score=24.24 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 11 NPAATLAALVSKRSRFQDELRNIENQVYEL 40 (160)
Q Consensus 11 ~~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~ 40 (160)
|+-.+|-.+...-..|+.+|..++++||++
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~~kE~~~l 94 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENKDKEIYDL 94 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555543
No 30
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=36.58 E-value=56 Score=29.40 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcee
Q 031418 15 TLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (160)
Q Consensus 15 ~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNII 55 (160)
+..+|+++-++|.++|..||.++...|...-+.-....||+
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~ 157 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQT 157 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 44567788888888899999888888888766544455654
No 31
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=36.37 E-value=48 Score=29.22 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCce
Q 031418 17 AALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNA 54 (160)
Q Consensus 17 ~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNI 54 (160)
.+|+++-++|.++|..||.++...|...-+.-...+||
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 109 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNI 109 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45667777788888888888888887775543334444
No 32
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=36.20 E-value=45 Score=20.90 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 14 ATLAALVSKRSRFQDELRNIENQV 37 (160)
Q Consensus 14 ~~L~~Ll~kRk~Le~~L~~LE~qI 37 (160)
..+..|..+-..|+..|..|+..|
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555443
No 33
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=36.17 E-value=77 Score=22.37 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhc
Q 031418 11 NPAATLAALVSKRSRFQDELRNIENQVYE---LETSYLQDI 48 (160)
Q Consensus 11 ~~~~~L~~Ll~kRk~Le~~L~~LE~qIYd---~EtsYLeeT 48 (160)
.+..+|.+|-+.+..|+.+|..+|.+... .|..|+.+.
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~ey 62 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREY 62 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35678889999999999999999887654 456676654
No 34
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=35.94 E-value=53 Score=23.35 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQVYEL 40 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~ 40 (160)
...+|++.-++-+.|..++..|++++.++
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888999998888873
No 35
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.48 E-value=48 Score=22.59 Aligned_cols=30 Identities=20% Similarity=0.102 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031418 14 ATLAALVSKRSRFQDELRNIENQVYELETS 43 (160)
Q Consensus 14 ~~L~~Ll~kRk~Le~~L~~LE~qIYd~Ets 43 (160)
..+..|-.++..|+..+..||.++-.++..
T Consensus 65 e~~~~L~~~~e~i~~~i~~le~~~~~~~~~ 94 (107)
T 1fxk_A 65 ELTEELQEKLETLQLREKTIERQEERVMKK 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666655554
No 36
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=35.18 E-value=59 Score=24.39 Aligned_cols=28 Identities=7% Similarity=0.175 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031418 16 LAALVSKRSRFQDELRNIENQVYELETS 43 (160)
Q Consensus 16 L~~Ll~kRk~Le~~L~~LE~qIYd~Ets 43 (160)
+..+-.-+++|+++|...|+-|..||--
T Consensus 77 ~k~Y~~~~keLd~~ik~qekiIdnFE~i 104 (119)
T 3etw_A 77 ASKYEDALKKLEAEMEQQKAVISDFEKI 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556788999999999999988853
No 37
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=34.28 E-value=26 Score=24.21 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031418 21 SKRSRFQDELRNIENQVYELE 41 (160)
Q Consensus 21 ~kRk~Le~~L~~LE~qIYd~E 41 (160)
..-.+++.+|.+||.+|+..|
T Consensus 59 ~qL~q~~~ql~~LE~q~~~iE 79 (79)
T 4abm_A 59 KQLAQIDGTLSTIEFQREALE 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 344578889999999998876
No 38
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=33.65 E-value=29 Score=22.73 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcee
Q 031418 20 VSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (160)
Q Consensus 20 l~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNII 55 (160)
-++.++|++.|..+-+.|-.+|- +.+-.|||.
T Consensus 13 Rkk~eeler~lrk~kk~iKklEd----eNPWLGNIk 44 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEE----DNPWLGNIK 44 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc----cCCchhhhh
Confidence 45566788899999999988874 445578873
No 39
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.35 E-value=41 Score=21.61 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQV 37 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~qI 37 (160)
++.++.+|.++-..|.+++..|..++
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555443
No 40
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=33.14 E-value=57 Score=29.41 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcee
Q 031418 17 AALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (160)
Q Consensus 17 ~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNII 55 (160)
.+|+++-++|.++|..||.++...|...-+.-...+||+
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~ 112 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIV 112 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 346666677778888888888877777655443344543
No 41
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=32.69 E-value=65 Score=19.52 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 12 PAATLAALVSKRSRFQDELRNIEN 35 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~ 35 (160)
+..+..+||.++..|+.+.+.|-.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456778888888888888877754
No 42
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=32.67 E-value=1.1e+02 Score=20.71 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 13 AATLAALVSKRSRFQDELRNIENQVYE 39 (160)
Q Consensus 13 ~~~L~~Ll~kRk~Le~~L~~LE~qIYd 39 (160)
...+..|-++...++.+|..++.+||.
T Consensus 78 ~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 78 QLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666666666553
No 43
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=31.31 E-value=41 Score=22.59 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 15 TLAALVSKRSRFQDELRNIENQVYELET 42 (160)
Q Consensus 15 ~L~~Ll~kRk~Le~~L~~LE~qIYd~Et 42 (160)
.+..|......|+.++..|..++..++.
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~ 75 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555543
No 44
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=31.19 E-value=68 Score=22.52 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQ 36 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~q 36 (160)
+.++|..|..+.+.|+..|..|...
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556666666666666666666653
No 45
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=30.48 E-value=70 Score=23.39 Aligned_cols=27 Identities=19% Similarity=0.430 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031418 18 ALVSKRSRFQDELRNIENQVYELETSY 44 (160)
Q Consensus 18 ~Ll~kRk~Le~~L~~LE~qIYd~EtsY 44 (160)
+|..+=++|.+.|..||.+=||+|..-
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv 72 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKF 72 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 455555689999999999999998764
No 46
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=30.47 E-value=65 Score=23.96 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031418 18 ALVSKRSRFQDELRNIENQVYELETS 43 (160)
Q Consensus 18 ~Ll~kRk~Le~~L~~LE~qIYd~Ets 43 (160)
+|++++.+|+.+|..++.+|-.++..
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa 29 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETA 29 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888888766665
No 47
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.98 E-value=57 Score=29.35 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=26.8
Q ss_pred HHHHH----HHH-HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcee
Q 031418 15 TLAAL----VSK-RSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (160)
Q Consensus 15 ~L~~L----l~k-Rk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNII 55 (160)
...+| +++ .++|.++|..||.++...|...-+.-...+||+
T Consensus 100 ~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~ 145 (484)
T 3lss_A 100 QVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNIL 145 (484)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34456 666 778889999999999888888765444445553
No 48
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=29.17 E-value=78 Score=22.23 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 11 NPAATLAALVSKRSRFQDELRNIENQVYELE 41 (160)
Q Consensus 11 ~~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~E 41 (160)
+++++|..+...|..|+-++..|...|.++-
T Consensus 60 ~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 60 ELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888888877653
No 49
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=29.11 E-value=81 Score=19.13 Aligned_cols=28 Identities=7% Similarity=0.086 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 11 NPAATLAALVSKRSRFQDELRNIENQVY 38 (160)
Q Consensus 11 ~~~~~L~~Ll~kRk~Le~~L~~LE~qIY 38 (160)
++...|...|.|-+.|+.+=..||.+|-
T Consensus 10 ~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 10 ELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678888899999999899998873
No 50
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=28.69 E-value=31 Score=22.99 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhhhhc
Q 031418 24 SRFQDELRNIENQVYEL-ETSYLQDI 48 (160)
Q Consensus 24 k~Le~~L~~LE~qIYd~-EtsYLeeT 48 (160)
-.|+.+|..||++..-- =++||++-
T Consensus 23 dEL~aELe~LeqE~~~~~~~syL~~~ 48 (57)
T 2lxm_B 23 DDLEAELDALGDELLADEDSSYLDEA 48 (57)
T ss_dssp HHHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHh
Confidence 47899999999887532 25799863
No 51
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=27.98 E-value=1.3e+02 Score=21.04 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQD 47 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLee 47 (160)
++++|.....--++|++++...|..|-++|-..=++
T Consensus 29 lR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d~ 64 (74)
T 2q6q_A 29 LRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSDA 64 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcccc
Confidence 577777777777889999999999999998765443
No 52
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=27.63 E-value=78 Score=25.42 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQVYELET 42 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~Et 42 (160)
+..++..|.+++.+|+..+..|+..|-.++.
T Consensus 81 L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~ 111 (249)
T 3qao_A 81 LDMQRHLLIEKKQRIETMLATLDLTIKNEKG 111 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666677777777777777777665544
No 53
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=27.39 E-value=74 Score=23.27 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031418 19 LVSKRSRFQDELRNIENQVYELETSY 44 (160)
Q Consensus 19 Ll~kRk~Le~~L~~LE~qIYd~EtsY 44 (160)
|.++=++|.+.|..||.+=||+|..-
T Consensus 47 L~e~~keLh~~I~~lEeEKYDlE~kv 72 (107)
T 1ytz_T 47 LRDKAKELWDWLYQLQTEKYDFAEQI 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44555679999999999999998764
No 54
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=27.23 E-value=94 Score=21.40 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 11 NPAATLAALVSKRSRFQDELRNIENQVYE 39 (160)
Q Consensus 11 ~~~~~L~~Ll~kRk~Le~~L~~LE~qIYd 39 (160)
++..+|.++..+-..|++++..+|.+|-+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~ 32 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEK 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 46678888888888888888888888765
No 55
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=26.65 E-value=80 Score=22.88 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 11 NPAATLAALVSKRSRFQDELRNIEN 35 (160)
Q Consensus 11 ~~~~~L~~Ll~kRk~Le~~L~~LE~ 35 (160)
.+..+|+.|..+...|+.+|..|+.
T Consensus 20 ~~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 20 AIEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566555555666666655554
No 56
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=26.45 E-value=96 Score=18.76 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031418 12 PAATLAALVSKRSRFQDELRNIE 34 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE 34 (160)
+..+..+||.++..|+.++..|-
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 45566778888888888777764
No 57
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=26.40 E-value=96 Score=21.31 Aligned_cols=23 Identities=9% Similarity=0.306 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031418 19 LVSKRSRFQDELRNIENQVYELE 41 (160)
Q Consensus 19 Ll~kRk~Le~~L~~LE~qIYd~E 41 (160)
|.+++..|+.+++.|+..+-.++
T Consensus 80 l~~~~~~l~~~i~~l~~~~~~l~ 102 (109)
T 1r8d_A 80 LQSQKEILMKKKQRMDEMIQTID 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555544443
No 58
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=26.30 E-value=1.5e+02 Score=19.87 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 14 ATLAALVSKRSRFQDELRNIENQVYELET 42 (160)
Q Consensus 14 ~~L~~Ll~kRk~Le~~L~~LE~qIYd~Et 42 (160)
..|++.-.+..+++.++..|...|-.+|.
T Consensus 27 ~~l~~~e~~~~~~E~ev~~L~kKiq~lE~ 55 (81)
T 1ic2_A 27 ADKKAAEERSKQLEDELVALQKKLKGTED 55 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555554444
No 59
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.19 E-value=98 Score=26.95 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031418 11 NPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (160)
Q Consensus 11 ~~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~Ets 43 (160)
.++.++.+|.++-+++..++..++++++..|..
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 46 (412)
T 3u06_A 14 HLRQRTEELLRCNEQQAAELETCKEQLFQSNME 46 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999998876
No 60
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=26.16 E-value=1.2e+02 Score=22.12 Aligned_cols=6 Identities=0% Similarity=0.407 Sum_probs=2.1
Q ss_pred HHHHHH
Q 031418 32 NIENQV 37 (160)
Q Consensus 32 ~LE~qI 37 (160)
.|+..|
T Consensus 106 ~L~~~i 111 (142)
T 3gp4_A 106 RLDFKI 111 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 61
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=26.02 E-value=95 Score=21.20 Aligned_cols=36 Identities=8% Similarity=0.246 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 031418 14 ATLAALVSKRSRFQDELRNIENQVYELETSYLQDIG 49 (160)
Q Consensus 14 ~~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~ 49 (160)
++|++.+..|.+|..+|--+++++.-.-..-|++..
T Consensus 3 ~Elr~iLqERNELKa~vf~lqeEL~yY~~e~l~~~~ 38 (65)
T 1yhn_B 3 EEFEQILQERNELKAKVFLLKEELAYFQRELLTDHR 38 (65)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 579999999999999999999887666666665543
No 62
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=25.67 E-value=1.2e+02 Score=21.81 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 11 NPAATLAALVSKRSRFQDELRNIENQVYELET 42 (160)
Q Consensus 11 ~~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~Et 42 (160)
.++++|..|.++=+.|++.+..+.++|-++-.
T Consensus 10 ~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 10 GLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57889999999999999999998888877653
No 63
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.24 E-value=94 Score=22.85 Aligned_cols=26 Identities=8% Similarity=0.258 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 16 LAALVSKRSRFQDELRNIENQVYELE 41 (160)
Q Consensus 16 L~~Ll~kRk~Le~~L~~LE~qIYd~E 41 (160)
+.-|.+++.+|+++++.|+..+-.++
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~~~~L~ 122 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKNLKKIQ 122 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555444433
No 64
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=24.98 E-value=1.1e+02 Score=18.56 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 12 PAATLAALVSKRSRFQDELRNIEN 35 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~ 35 (160)
+..+..+||.++..|+.+...|-.
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 456677889999988888877753
No 65
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=24.75 E-value=1.3e+02 Score=21.81 Aligned_cols=26 Identities=8% Similarity=0.149 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 13 AATLAALVSKRSRFQDELRNIENQVY 38 (160)
Q Consensus 13 ~~~L~~Ll~kRk~Le~~L~~LE~qIY 38 (160)
.+++...+++-+.|.+.+..||.+|.
T Consensus 88 ~~~~~~e~~~~~~L~~~i~~Le~el~ 113 (117)
T 3kin_B 88 KKKYEKEKEKNKALKSVIQHLEVELN 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555543
No 66
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=24.44 E-value=1.1e+02 Score=17.79 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031418 14 ATLAALVSKRSRFQDELRNIEN 35 (160)
Q Consensus 14 ~~L~~Ll~kRk~Le~~L~~LE~ 35 (160)
+..++|.+-|.+++.-|..||+
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~ 24 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777778877777775
No 67
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=23.86 E-value=1.3e+02 Score=18.14 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 12 PAATLAALVSKRSRFQDELRNIEN 35 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~ 35 (160)
+..+..+|+.++..|+.+++.|-.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445666777777777777766643
No 68
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=23.84 E-value=22 Score=26.83 Aligned_cols=47 Identities=13% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCceecccccccc
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNIIKGFDgylk 63 (160)
..+.|.+..+.+.+|+..+..|+. ...+.|+.+. |+++++=|..|++
T Consensus 39 A~~~L~~~~~m~~~i~ek~~~i~~---~~~~~~yK~e--Y~~L~KkYk~~~~ 85 (119)
T 2avr_X 39 ARQALAQNEQVYNELSQRAQRLQA---EANTRFYKSQ--YQELASKYEDALK 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HTTSCTTHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhcccHHHHH--HHHHHHHHHHHHH
No 69
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=23.81 E-value=1.7e+02 Score=20.49 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 13 AATLAALVSKRSRFQDELRNIENQVYELET 42 (160)
Q Consensus 13 ~~~L~~Ll~kRk~Le~~L~~LE~qIYd~Et 42 (160)
...++.+-.+..+++.++..|...|-..|.
T Consensus 29 e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~ 58 (101)
T 3u1c_A 29 EADKKAAEERSKQLEDDIVQLEKQLRVTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666655544
No 70
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=23.49 E-value=1.3e+02 Score=18.33 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQV 37 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~qI 37 (160)
+..+..+|+.++..|+.+.+.|-.-+
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45667788888888888877776543
No 71
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=23.43 E-value=1.1e+02 Score=19.52 Aligned_cols=21 Identities=19% Similarity=0.534 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 031418 25 RFQDELRNIENQVYELETSYL 45 (160)
Q Consensus 25 ~Le~~L~~LE~qIYd~EtsYL 45 (160)
+|++++..||..+|.---.|.
T Consensus 16 KLek~ID~LEdeL~~eKek~~ 36 (52)
T 2z5i_A 16 RLKKLVDDLEDELYAQKLKYK 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 455555555555554444443
No 72
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=23.31 E-value=91 Score=22.15 Aligned_cols=24 Identities=8% Similarity=0.207 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 12 PAATLAALVSKRSRFQDELRNIEN 35 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~ 35 (160)
+.+.+..|-+++.+|+.+|..++.
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 73
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=23.04 E-value=57 Score=21.23 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 031418 24 SRFQDELRNIENQVYELETS 43 (160)
Q Consensus 24 k~Le~~L~~LE~qIYd~Ets 43 (160)
.-|+.+|..|+.+|+..+++
T Consensus 31 ~~Le~NLrEL~~ei~~~~~~ 50 (51)
T 1yzm_A 31 RTLQENLRQLQDEYDQQQTE 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 45888889999998887753
No 74
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=22.75 E-value=1.2e+02 Score=24.67 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQ---VYEL 40 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~q---IYd~ 40 (160)
+..++.++.+++.+|+.++..|+.+ |-.+
T Consensus 104 l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L 135 (357)
T 3rrk_A 104 VASRAEVLGKERAALEEEIQTIELFGKAAEKL 135 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455666667777777777777776 5544
No 75
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=22.73 E-value=1.8e+02 Score=19.57 Aligned_cols=36 Identities=19% Similarity=0.422 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDI 48 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT 48 (160)
+-++++.|++-|+ |==++.+||.++--+--+||+..
T Consensus 26 P~~~~rTLLEi~K-L~LEIQKL~~EL~glskeflehi 61 (65)
T 2yf2_A 26 PTEDVKTLLEIRK-LFLEIQKLKVELQGLSKEFLEHI 61 (65)
T ss_dssp CHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHcchhHHHHHHH
Confidence 4567888888875 66778888888888888888753
No 76
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=22.67 E-value=1.5e+02 Score=20.35 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 031418 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQD 47 (160)
Q Consensus 11 ~~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLee 47 (160)
++++++..+...+..|+-++..+...+.++=..|=++
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E 40 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 40 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999998887777554
No 77
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=22.53 E-value=44 Score=23.03 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 031418 24 SRFQDELRNIENQVYELETS 43 (160)
Q Consensus 24 k~Le~~L~~LE~qIYd~Ets 43 (160)
.-|+.+|..|+.+|+..+++
T Consensus 49 ~tLe~NLrEL~~ei~~~q~~ 68 (69)
T 1z0k_B 49 RTLQENLRQLQDEYDQQQTE 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 45788888888888887653
No 78
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=22.46 E-value=1.8e+02 Score=20.15 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLe 46 (160)
+-.++..|-..|+.+=+.|+.||+.=..+|-....
T Consensus 26 ID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~ 60 (72)
T 2xu6_A 26 IEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45678889999999999999999998888876554
No 79
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=22.20 E-value=1.6e+02 Score=18.82 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 14 ATLAALVSKRSRFQDELRNIENQV 37 (160)
Q Consensus 14 ~~L~~Ll~kRk~Le~~L~~LE~qI 37 (160)
..|..|-++=..+...|+.||.+|
T Consensus 23 ~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 23 ELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555556666666666655
No 80
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=21.91 E-value=1.3e+02 Score=21.92 Aligned_cols=31 Identities=6% Similarity=0.271 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031418 13 AATLAALVSKRSRFQDELRNIENQVYELETS 43 (160)
Q Consensus 13 ~~~L~~Ll~kRk~Le~~L~~LE~qIYd~Ets 43 (160)
-..+..|++++..|+..|..++..+.+.|-.
T Consensus 68 EE~~~~L~~~k~eLe~~l~el~~rleeeee~ 98 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEEM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888888888888888888776643
No 81
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=21.85 E-value=1.3e+02 Score=22.04 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 13 AATLAALVSKRSRFQDELRNIENQVYEL 40 (160)
Q Consensus 13 ~~~L~~Ll~kRk~Le~~L~~LE~qIYd~ 40 (160)
...+..|..++..|++++..|+..+-..
T Consensus 79 ~~~~~~L~~q~~~L~~~i~~l~~~l~~l 106 (146)
T 3hh0_A 79 EVFLRQMHFQREVLLAEQERIAKVLSHM 106 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555554433
No 82
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=21.77 E-value=1.3e+02 Score=20.58 Aligned_cols=23 Identities=9% Similarity=0.211 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031418 19 LVSKRSRFQDELRNIENQVYELE 41 (160)
Q Consensus 19 Ll~kRk~Le~~L~~LE~qIYd~E 41 (160)
|.++++.|+++++.|+..+-..+
T Consensus 79 l~~~~~~l~~~i~~l~~~~~~l~ 101 (108)
T 2vz4_A 79 LRRQHELLSARIGKLQKMAAAVE 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555554444444433
No 83
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=21.74 E-value=1.1e+02 Score=17.58 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 031418 25 RFQDELRNIENQVYELETS 43 (160)
Q Consensus 25 ~Le~~L~~LE~qIYd~Ets 43 (160)
+|+.....||+++-.+|++
T Consensus 5 kldanvkrlekevgklege 23 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEGE 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eccccHHHHHHHHhhhhhh
Confidence 5777777788877777765
No 84
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.34 E-value=98 Score=22.06 Aligned_cols=30 Identities=7% Similarity=0.104 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 13 AATLAALVSKRSRFQDELRNIENQVYELET 42 (160)
Q Consensus 13 ~~~L~~Ll~kRk~Le~~L~~LE~qIYd~Et 42 (160)
..++..+...+..|...+..+++-|-..++
T Consensus 14 ~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~ 43 (133)
T 1fxk_C 14 QSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555543
No 85
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=21.31 E-value=1e+02 Score=18.21 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 031418 25 RFQDELRNIENQVYELETS 43 (160)
Q Consensus 25 ~Le~~L~~LE~qIYd~Ets 43 (160)
+|+++.++-|.+-|.+|.+
T Consensus 5 qlekevaqaeaenyqleqe 23 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQE 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 4555666666555555544
No 86
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=21.22 E-value=1.7e+02 Score=24.43 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYL 45 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYL 45 (160)
+-.++..|..+|+.+.+.|+.||+.=..+|-...
T Consensus 182 ID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~ 215 (242)
T 3uux_B 182 IEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLK 215 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 5578899999999999999999998888877653
No 87
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.03 E-value=2.2e+02 Score=20.89 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQVYELET 42 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~Et 42 (160)
+.++|.+.-..-.+|..++..|..+|-.+|-
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEk 39 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEI 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555666666665555554
No 88
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=20.74 E-value=93 Score=22.19 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-CCCceeccccc
Q 031418 14 ATLAALVSKRSRFQDELRNIENQVYELETSYLQDIG-QFGNAFKGFEG 60 (160)
Q Consensus 14 ~~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~-~~GNIIKGFDg 60 (160)
..+++|...++.|.+++..++++|..+- ..+ .+|+|++=+|.
T Consensus 7 ~~~~~l~~~~~~l~~~i~~lkeel~~L~-----~~P~~Vg~v~e~~d~ 49 (109)
T 2wg5_A 7 HRMKQLEDKVEELLSKNYHLENEVARLR-----SPPLLVGVVSDILED 49 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH-----SCCEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCceEEEEEEEecC
Confidence 3456777777888888888887776644 344 47888887763
No 89
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.72 E-value=1.6e+02 Score=22.77 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIG 49 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~ 49 (160)
+...|.+-.++|...+..+.+||.++-++=++.|++-+
T Consensus 63 L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN 100 (154)
T 2ocy_A 63 LREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEAN 100 (154)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677888899999999999999888888753
No 90
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=20.71 E-value=1.3e+02 Score=22.36 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 031418 19 LVSKRSRFQDELRNIENQVYELETS 43 (160)
Q Consensus 19 Ll~kRk~Le~~L~~LE~qIYd~Ets 43 (160)
+-.-+++|...|..||.+|-++|.+
T Consensus 65 ~~~~~~EL~~~l~sie~dLeDLe~s 89 (130)
T 4dnd_A 65 LDWTTNELRNGLRSIEWDLEDLEET 89 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666777777777777776644
No 91
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=20.67 E-value=2e+02 Score=19.41 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031418 13 AATLAALVSKRSRFQDELRNIENQVYELETS 43 (160)
Q Consensus 13 ~~~L~~Ll~kRk~Le~~L~~LE~qIYd~Ets 43 (160)
.+++.+|++-...|.++|.-+++.|-.+-.+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 5678889999999999999999998776543
No 92
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=20.49 E-value=27 Score=26.28 Aligned_cols=48 Identities=10% Similarity=0.201 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCceecccccccc
Q 031418 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63 (160)
Q Consensus 11 ~~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNIIKGFDgylk 63 (160)
...+.|....+.+.+|+..|..|+... ++.|+.+. |+++|+=|..+++
T Consensus 38 ~A~~~La~~~~l~~~i~er~~~i~~~~---~~~~yk~~--y~~l~k~Y~~~~k 85 (119)
T 3etw_A 38 AARQALAQNEQVYNELSQRAQRLQAEA---NTRFYKSQ--YQELASKYEDALK 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---TSCTTHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchHHHH--HHHHHHHHHHHHH
Confidence 346677888888888888888888743 56666553 5666666666554
No 93
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=20.47 E-value=1.5e+02 Score=21.74 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031418 19 LVSKRSRFQDELRNIENQVYE 39 (160)
Q Consensus 19 Ll~kRk~Le~~L~~LE~qIYd 39 (160)
|.+++..|++++..|+..+-.
T Consensus 86 L~~~~~~l~~~i~~L~~~~~~ 106 (142)
T 3gp4_A 86 LKKQRIELKNRIDVMQEALDR 106 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 94
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=20.24 E-value=1.9e+02 Score=18.99 Aligned_cols=29 Identities=3% Similarity=0.146 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 14 ATLAALVSKRSRFQDELRNIENQVYELET 42 (160)
Q Consensus 14 ~~L~~Ll~kRk~Le~~L~~LE~qIYd~Et 42 (160)
..+.-|.+++..|+.+++.|+..+..++.
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~ 67 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQRSLQR 67 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566667777777777776666654
Done!