Query 031418
Match_columns 160
No_of_seqs 110 out of 170
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 22:17:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031418.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031418hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 50.3 7.7 0.00056 26.1 3.8 32 15-46 2-33 (133)
2 d1seta1 a.2.7.1 (A:1-110) Sery 49.6 21 0.0015 23.4 5.9 42 14-55 64-105 (110)
3 d1fxka_ a.2.5.1 (A:) Prefoldin 32.7 49 0.0036 21.4 5.6 34 12-45 63-96 (107)
4 d1r8da_ a.6.1.3 (A:) Multidrug 31.8 14 0.001 23.9 2.6 22 16-37 84-105 (109)
5 d2azeb1 e.63.1.2 (B:201-301) T 28.2 48 0.0035 22.1 5.0 31 11-41 5-35 (101)
6 d1nkpa_ a.38.1.1 (A:) Myc prot 27.5 42 0.003 21.1 4.3 19 19-37 64-82 (88)
7 d1seta1 a.2.7.1 (A:1-110) Sery 25.9 57 0.0042 21.0 5.0 30 11-40 68-97 (110)
8 d1fxkc_ a.2.5.1 (C:) Prefoldin 24.6 72 0.0052 20.9 5.4 28 14-41 95-122 (133)
9 d1lvfa_ a.47.2.1 (A:) Syntaxin 23.5 52 0.0038 21.6 4.4 26 19-44 40-65 (106)
10 d1fxka_ a.2.5.1 (A:) Prefoldin 21.6 89 0.0064 20.1 5.3 30 12-41 13-42 (107)
11 d1ivsa1 a.2.7.3 (A:797-862) Va 20.1 85 0.0062 18.6 4.6 23 14-36 4-26 (66)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=50.34 E-value=7.7 Score=26.15 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031418 15 TLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (160)
Q Consensus 15 ~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLe 46 (160)
.|.+|+...+.|+.+|..|+.+|..++..--+
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e 33 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISE 33 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888888888888888777765544
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=49.56 E-value=21 Score=23.40 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcee
Q 031418 14 ATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (160)
Q Consensus 14 ~~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYLeeT~~~GNII 55 (160)
....+++++=+.|..+|..||.++-..|..+-+--....||+
T Consensus 64 ~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPNi~ 105 (110)
T d1seta1 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPP 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 344567777788889999999999999988887666677875
No 3
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=32.65 E-value=49 Score=21.44 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYL 45 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~EtsYL 45 (160)
....+.+|-.+...|+..+..|+++|-.++..|=
T Consensus 63 ~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~ 96 (107)
T d1fxka_ 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777788888888888887777664
No 4
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=31.82 E-value=14 Score=23.91 Aligned_cols=22 Identities=18% Similarity=0.462 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031418 16 LAALVSKRSRFQDELRNIENQV 37 (160)
Q Consensus 16 L~~Ll~kRk~Le~~L~~LE~qI 37 (160)
...+.++++.|++.++.|++.|
T Consensus 84 ~~~l~~~~~~l~~~~~~l~~~l 105 (109)
T d1r8da_ 84 KEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555544
No 5
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.17 E-value=48 Score=22.11 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 11 NPAATLAALVSKRSRFQDELRNIENQVYELE 41 (160)
Q Consensus 11 ~~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~E 41 (160)
.++++|..|.++-+.|++.+..+.++|.++-
T Consensus 5 ~L~~El~~L~~~E~~LD~li~~~~~~L~~lt 35 (101)
T d2azeb1 5 GLTQDLRQLQESEQQLDHLMNICTTQLRLLS 35 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999888887754
No 6
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.46 E-value=42 Score=21.06 Aligned_cols=19 Identities=11% Similarity=0.370 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031418 19 LVSKRSRFQDELRNIENQV 37 (160)
Q Consensus 19 Ll~kRk~Le~~L~~LE~qI 37 (160)
|...+..|..++..|..+|
T Consensus 64 l~~~~~~l~~~~~~L~~~l 82 (88)
T d1nkpa_ 64 LISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=25.89 E-value=57 Score=21.03 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 11 NPAATLAALVSKRSRFQDELRNIENQVYEL 40 (160)
Q Consensus 11 ~~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~ 40 (160)
.+.++++.|=.+=+.|+.++..+|.+|+++
T Consensus 68 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 68 ALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777778888888888887764
No 8
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.60 E-value=72 Score=20.87 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 14 ATLAALVSKRSRFQDELRNIENQVYELE 41 (160)
Q Consensus 14 ~~L~~Ll~kRk~Le~~L~~LE~qIYd~E 41 (160)
+.+..|-...+.|..++..++.+|..++
T Consensus 95 ~ri~~l~~~~~~l~~~~~~~~~~i~~l~ 122 (133)
T d1fxkc_ 95 SQKNELESTLQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555444
No 9
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.49 E-value=52 Score=21.60 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031418 19 LVSKRSRFQDELRNIENQVYELETSY 44 (160)
Q Consensus 19 Ll~kRk~Le~~L~~LE~qIYd~EtsY 44 (160)
+..-+++|...|..||.+|-++|.+=
T Consensus 40 ~~~~~~eL~~~l~siewdL~dLe~av 65 (106)
T d1lvfa_ 40 IDWTTNELRNNLRSIEWDLEDLDETI 65 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44557788899999999988888653
No 10
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.56 E-value=89 Score=20.08 Aligned_cols=30 Identities=10% Similarity=0.184 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031418 12 PAATLAALVSKRSRFQDELRNIENQVYELE 41 (160)
Q Consensus 12 ~~~~L~~Ll~kRk~Le~~L~~LE~qIYd~E 41 (160)
+..+|..+..++.+|+.++...+.-+-.++
T Consensus 13 lq~el~~~~~q~~~le~q~~E~~~vl~eL~ 42 (107)
T d1fxka_ 13 LQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544444444
No 11
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=20.09 E-value=85 Score=18.58 Aligned_cols=23 Identities=0% Similarity=-0.153 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031418 14 ATLAALVSKRSRFQDELRNIENQ 36 (160)
Q Consensus 14 ~~L~~Ll~kRk~Le~~L~~LE~q 36 (160)
+++.-|.++...|+.++..|+..
T Consensus 4 ~E~~RL~K~l~kl~~~i~~~~~k 26 (66)
T d1ivsa1 4 EWRRRQEKRLKELLALAERSQRK 26 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
Done!