Query 031420
Match_columns 160
No_of_seqs 132 out of 1107
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 22:19:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpr_A Ubiquitin-conjugating e 100.0 3.4E-53 1.1E-57 304.3 20.2 150 4-159 2-151 (151)
2 3rcz_B SUMO-conjugating enzyme 100.0 2.6E-53 9.1E-58 307.9 19.3 157 2-158 6-163 (163)
3 2gjd_A Ubiquitin-conjugating e 100.0 5E-53 1.7E-57 305.1 18.7 156 1-158 1-157 (157)
4 1ayz_A UBC2, ubiquitin-conjuga 100.0 1E-52 3.4E-57 306.5 18.7 150 1-158 1-150 (169)
5 2aak_A UBC1, ubiquitin conjuga 100.0 1.9E-52 6.5E-57 300.7 19.6 150 1-158 1-150 (152)
6 1z2u_A Ubiquitin-conjugating e 100.0 1.8E-52 6.1E-57 300.2 19.1 150 3-158 1-150 (150)
7 2grr_A Ubiquitin-conjugating e 100.0 2.3E-52 7.7E-57 302.8 19.4 156 1-158 4-160 (161)
8 2c2v_B Ubiquitin-conjugating e 100.0 4.2E-53 1.4E-57 304.6 15.4 151 3-159 2-152 (154)
9 1zdn_A Ubiquitin-conjugating e 100.0 1.6E-52 5.4E-57 302.7 17.9 147 5-157 12-158 (158)
10 2ucz_A UBC7, ubiquitin conjuga 100.0 3.8E-52 1.3E-56 302.8 19.2 153 1-158 1-164 (165)
11 1yh2_A HSPC150 protein similar 100.0 6.3E-52 2.2E-56 302.5 20.2 153 3-159 1-155 (169)
12 2ayv_A Ubiquitin-conjugating e 100.0 9.3E-52 3.2E-56 300.6 19.7 147 5-157 20-166 (166)
13 2c4o_A Ubiquitin-conjugating e 100.0 1.6E-51 5.6E-56 299.1 20.0 148 5-158 18-165 (165)
14 2bep_A Ubiquitin-conjugating e 100.0 1.7E-51 5.8E-56 297.7 19.4 152 1-158 3-158 (159)
15 3h8k_A Ubiquitin-conjugating e 100.0 1.9E-51 6.4E-56 298.9 19.3 151 5-158 2-163 (164)
16 2r0j_A Ubiquitin carrier prote 100.0 8.1E-52 2.8E-56 296.5 16.8 147 7-159 2-148 (149)
17 2e2c_A Ubiquitin conjugating e 100.0 1.7E-51 5.8E-56 296.9 17.7 147 5-158 8-154 (156)
18 1fxt_A Ubiquitin-conjugating e 100.0 2E-51 6.8E-56 294.5 15.5 147 7-158 2-149 (149)
19 1jat_A Ubiquitin-conjugating e 100.0 2.1E-51 7.1E-56 296.1 14.8 148 5-158 4-151 (155)
20 3k9o_A Ubiquitin-conjugating e 100.0 9.4E-51 3.2E-55 303.8 17.6 151 1-159 2-156 (201)
21 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1.6E-50 5.4E-55 300.1 18.4 148 5-158 31-192 (193)
22 3bzh_A Ubiquitin-conjugating e 100.0 3.8E-50 1.3E-54 298.4 19.9 148 5-158 47-194 (194)
23 1i7k_A Ubiquitin-conjugating e 100.0 1.8E-50 6.2E-55 296.7 17.5 147 5-158 29-175 (179)
24 2pwq_A Ubiquitin conjugating e 100.0 1.6E-50 5.5E-55 304.6 17.0 149 5-159 22-171 (216)
25 1wzv_A Ubiquitin-conjugating e 100.0 4.2E-50 1.4E-54 289.3 17.5 146 6-158 4-151 (155)
26 3fn1_B NEDD8-conjugating enzym 100.0 1.6E-49 5.4E-54 289.5 18.9 150 5-158 13-167 (167)
27 1yrv_A Ubiquitin-conjugating l 100.0 4.7E-50 1.6E-54 292.3 15.6 146 5-155 22-168 (169)
28 3rz3_A Ubiquitin-conjugating e 100.0 1.5E-49 5.1E-54 293.3 18.3 153 1-157 3-172 (183)
29 3e46_A Ubiquitin-conjugating e 100.0 2.2E-49 7.4E-54 304.3 19.0 149 5-159 56-208 (253)
30 1tte_A Ubiquitin-conjugating e 100.0 6.4E-50 2.2E-54 301.1 14.2 147 7-158 3-150 (215)
31 2y9m_A Ubiquitin-conjugating e 100.0 7.8E-49 2.7E-53 286.9 18.0 152 1-158 1-168 (172)
32 2awf_A Ubiquitin-conjugating e 100.0 2.5E-49 8.5E-54 289.4 14.9 146 4-152 15-172 (172)
33 1c4z_D UBCH7, ubiquitin conjug 100.0 3E-49 1E-53 284.6 11.7 148 7-159 3-150 (154)
34 2z5d_A Ubiquitin-conjugating e 100.0 4.3E-49 1.5E-53 289.1 12.4 148 1-158 20-169 (179)
35 2onu_A Ubiquitin-conjugating e 100.0 4.2E-49 1.4E-53 283.0 10.6 144 7-159 3-148 (152)
36 1y8x_A Ubiquitin-conjugating e 100.0 1.2E-47 4.2E-52 277.5 17.2 142 5-155 5-147 (160)
37 2nvu_C NEDD8-conjugating enzym 100.0 2.4E-47 8.1E-52 280.6 17.0 143 4-155 24-167 (180)
38 1yf9_A Ubiquitin carrier prote 100.0 1.2E-47 4.2E-52 280.0 12.3 143 6-158 12-156 (171)
39 4ddg_A Ubiquitin-conjugating e 100.0 1.3E-46 4.4E-51 306.6 19.2 149 5-159 2-150 (399)
40 3o2u_A NEDD8-conjugating enzym 100.0 3E-46 1E-50 276.8 16.4 144 5-157 28-178 (190)
41 4ds2_A Ubiquitin-conjugating e 100.0 7.9E-46 2.7E-50 269.9 12.3 143 1-151 5-164 (167)
42 3ceg_A Baculoviral IAP repeat- 100.0 4.2E-43 1.5E-47 276.5 15.2 150 5-158 75-243 (323)
43 2q0v_A Ubiquitin-conjugating e 100.0 1.1E-43 3.9E-48 255.4 10.1 133 5-141 20-156 (156)
44 2fo3_A Ubiquitin-conjugating e 100.0 4.3E-42 1.5E-46 239.2 13.9 117 6-128 6-123 (125)
45 1jat_B Ubiquitin-conjugating e 100.0 2.4E-43 8.1E-48 249.5 6.9 133 1-138 2-138 (138)
46 2a4d_A Ubiquitin-conjugating e 100.0 8.6E-42 2.9E-46 246.2 13.2 128 5-135 24-156 (160)
47 2h2y_A Ubiquitin-conjugating e 100.0 3.1E-41 1.1E-45 238.0 15.6 116 5-126 19-135 (136)
48 2hlw_A Ubiquitin-conjugating e 100.0 3E-41 1E-45 245.8 9.5 128 5-135 34-166 (170)
49 2a7l_A Hypothetical ubiquitin- 100.0 1.8E-40 6.1E-45 233.8 12.3 109 8-122 24-136 (136)
50 2f4w_A Ubiquitin-conjugating e 100.0 3.8E-38 1.3E-42 232.8 16.2 118 5-128 13-131 (187)
51 1zuo_A Hypothetical protein LO 100.0 4.4E-40 1.5E-44 242.9 3.7 140 4-156 25-180 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 2.9E-29 1E-33 178.8 1.5 98 8-115 34-144 (172)
53 3r3q_A Suppressor protein STP2 99.8 4.4E-20 1.5E-24 132.6 10.2 113 9-128 31-161 (162)
54 3kpa_A Probable ubiquitin fold 99.7 1.2E-18 3.9E-23 121.7 2.0 82 7-98 35-127 (168)
55 3obq_A Tumor susceptibility ge 99.6 6.7E-15 2.3E-19 103.9 10.0 102 12-122 26-137 (146)
56 2ebm_A RWD domain-containing p 97.4 0.0025 8.6E-08 43.2 9.9 68 7-80 11-78 (128)
57 2day_A Ring finger protein 25; 96.2 0.062 2.1E-06 36.1 9.6 70 9-80 11-82 (128)
58 3zqs_A E3 ubiquitin-protein li 95.9 0.053 1.8E-06 39.2 8.7 83 9-121 4-86 (186)
59 2yz0_A Serine/threonine-protei 95.7 0.073 2.5E-06 36.3 8.2 72 8-80 12-85 (138)
60 2ebk_A RWD domain-containing p 95.2 0.051 1.7E-06 36.6 6.0 67 9-79 10-78 (128)
61 2daw_A RWD domain containing p 94.7 0.27 9.2E-06 34.3 8.8 23 58-80 76-98 (154)
62 1ukx_A GCN2, GCN2 EIF2alpha ki 93.9 0.63 2.2E-05 31.3 9.2 71 8-79 12-85 (137)
63 2dax_A Protein C21ORF6; RWD do 91.6 0.5 1.7E-05 32.6 6.2 24 58-81 74-97 (152)
64 3u3c_B Paxillin LD2 peptide; 4 82.8 1.1 3.9E-05 20.8 2.3 21 6-26 5-25 (26)
65 2cwb_A Chimera of immunoglobul 82.3 0.26 9E-06 32.4 0.0 36 123-158 20-55 (108)
66 3rls_A YAF9, protein AF-9 homo 40.0 79 0.0027 22.3 5.8 44 36-81 29-72 (175)
67 1zoq_C CREB-binding protein, i 38.6 34 0.0012 18.5 2.8 43 114-158 3-46 (47)
68 2jrw_A Cyclic extended PEP.1; 36.5 17 0.00057 16.8 1.2 17 70-86 4-20 (26)
69 2rf4_B DNA-directed RNA polyme 31.2 9.8 0.00034 23.7 -0.1 13 6-18 62-74 (87)
70 2bum_A Protocatechuate 3,4-dio 23.5 67 0.0023 23.2 3.2 25 55-79 109-138 (209)
71 2f4m_B UV excision repair prot 22.9 87 0.003 18.0 3.0 20 130-149 37-56 (61)
72 1pve_A HHR23B, UV excision rep 22.4 84 0.0029 18.7 3.0 21 130-150 39-59 (72)
73 3qrl_A Transcription initiatio 22.3 1.9E+02 0.0064 19.6 5.7 44 38-83 31-77 (140)
74 2k6w_A Putative uncharacterize 21.1 94 0.0032 20.3 3.3 26 42-67 82-107 (120)
75 3g9r_A Fusion complex of HIV-1 20.9 69 0.0024 16.7 2.0 14 6-19 28-41 (42)
76 3pft_A Flavin reductase; desul 20.4 43 0.0015 22.7 1.6 30 71-100 42-74 (157)
No 1
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=3.4e-53 Score=304.26 Aligned_cols=150 Identities=29% Similarity=0.644 Sum_probs=145.8
Q ss_pred chHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 031420 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF 83 (160)
Q Consensus 4 ~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 83 (160)
+..|.+||++|+++++++++.|+++.+.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~----~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 77 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGPVG----DDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVY 77 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESS----SCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcC----CCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcc
Confidence 36799999999999999999999999876 79999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031420 84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 159 (160)
Q Consensus 84 Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~ 159 (160)
||||+.+|+||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.|
T Consensus 78 HPnv~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p 151 (151)
T 4gpr_A 78 HPNINKNGVICLDILKD--QWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP 151 (151)
T ss_dssp BTTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred cceECCCCEEEcccccC--CCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999987 899999999999999999999999999999999999999999999999999999976
No 2
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=2.6e-53 Score=307.90 Aligned_cols=157 Identities=59% Similarity=1.144 Sum_probs=147.4
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031420 2 SGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 2 s~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (160)
+||..|.+||++|+++|+++++.|+++.+..+ |++.|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|
T Consensus 6 ~~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t 85 (163)
T 3rcz_B 6 HHSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP 85 (163)
T ss_dssp ---CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC
Confidence 46789999999999999999999999998764 33349999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 81 GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 81 ~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
++|||||+.+|+||+++|..+++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 86 ~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya~ 163 (163)
T 3rcz_B 86 PLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 163 (163)
T ss_dssp CCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred CCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence 999999999999999999885579999999999999999999999999999999999999999999999999999985
No 3
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=5e-53 Score=305.11 Aligned_cols=156 Identities=62% Similarity=1.151 Sum_probs=146.7
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeec
Q 031420 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP 79 (160)
Q Consensus 1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 79 (160)
|| +.+.+||++|+++|+++++.|+++.|..+ ++++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.
T Consensus 1 Ms--~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 78 (157)
T 2gjd_A 1 MS--SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFP 78 (157)
T ss_dssp ----CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECC
T ss_pred CC--hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeecc
Confidence 77 78999999999999999999999998753 3446999999999999999999999999999999999999999999
Q ss_pred cCcccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 80 QGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 80 t~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
|++|||||+.+|+||+++|..+++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||.
T Consensus 79 t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 79 AGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp TTCCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred CCCccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999885579999999999999999999999999999999999999999999999999999984
No 4
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1e-52 Score=306.49 Aligned_cols=150 Identities=41% Similarity=0.767 Sum_probs=145.1
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031420 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (160)
|| +.+.+||++|+++|+++++.|+++.+.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|
T Consensus 1 Ms--~~a~~RL~kEl~~l~~~~~~gi~~~p~~----~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t 74 (169)
T 1ayz_A 1 MS--TPARRRLMRDFKRMKEDAPPGVSASPLP----DNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLS 74 (169)
T ss_dssp -C--CHHHHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred CC--hHHHHHHHHHHHHHHhCCCCCEEEEecC----CccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCcccccc
Confidence 77 7899999999999999999999999876 89999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 81 GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 81 ~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
++|||||+.+|+||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus 75 ~i~HPNI~~~G~ICl~iL~~--~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~ 150 (169)
T 1ayz_A 75 EMFHPNVYANGEICLDILQN--RWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150 (169)
T ss_dssp CCCCTTBCTTSBBCCGGGTT--TCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCCCCeEeehhhcc--CCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999987 89999999999999999999999999999999999999999999999999999974
No 5
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1.9e-52 Score=300.69 Aligned_cols=150 Identities=42% Similarity=0.823 Sum_probs=145.9
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031420 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (160)
|| +.+.+||++|+++|+++++.|+++.+.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|
T Consensus 1 Ms--~~a~~RL~~E~~~l~~~~~~~i~~~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 74 (152)
T 2aak_A 1 MS--TPARKRLMRDFKRLQQDPPAGISGAPQD----NNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS 74 (152)
T ss_dssp CC--CHHHHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred CC--hHHHHHHHHHHHHHHhCCCCCEEEEeCC----CCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEec
Confidence 77 7899999999999999999999998876 79999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 81 GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 81 ~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
++|||||+.+|+||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus 75 ~i~HPnv~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 150 (152)
T 2aak_A 75 RMFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150 (152)
T ss_dssp CCCCTTBCTTSBBCCGGGTT--SCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CcccCCCCCCCEEechhhcC--CCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 99999999999999999987 89999999999999999999999999999999999999999999999999999985
No 6
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=1.8e-52 Score=300.24 Aligned_cols=150 Identities=33% Similarity=0.680 Sum_probs=145.5
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc
Q 031420 3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF 82 (160)
Q Consensus 3 ~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 82 (160)
||..+.+||++|+++|+++++.|+++.+.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++
T Consensus 1 ~s~~~~~RL~kEl~~l~~~~~~~~~~~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 76 (150)
T 1z2u_A 1 GSHMALKRIQKELQDLGRDPPAQCSAGPVG----DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI 76 (150)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCSSEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred CchHHHHHHHHHHHHHHhCCCCCEEEEECC----CcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCc
Confidence 568899999999999999999999999876 7999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 83 FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 83 ~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
|||||+.+|+||+++|.+ +|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||.
T Consensus 77 ~HPnv~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 77 YHPNINSNGSICLDILRS--QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp CBTTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred ccCcCCCCCeEeeccccC--CCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999997 89999999999999999999999999999999999999999999999999999984
No 7
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=2.3e-52 Score=302.80 Aligned_cols=156 Identities=65% Similarity=1.228 Sum_probs=147.8
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeec
Q 031420 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP 79 (160)
Q Consensus 1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 79 (160)
|| +.+.+||++|+++|+++++.|+++.+..+ ++++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.
T Consensus 4 M~--~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 81 (161)
T 2grr_A 4 MS--GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFE 81 (161)
T ss_dssp CC--HHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred cc--HHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEe
Confidence 56 78999999999999999999999988643 3457999999999999999999999999999999999999999999
Q ss_pred cCcccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 80 QGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 80 t~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
|++|||||+.+|+||+++|...++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||.
T Consensus 82 t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 160 (161)
T 2grr_A 82 PPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160 (161)
T ss_dssp SCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred cCcccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999875589999999999999999999999999999999999999999999999999999985
No 8
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.2e-53 Score=304.59 Aligned_cols=151 Identities=31% Similarity=0.606 Sum_probs=143.5
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc
Q 031420 3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF 82 (160)
Q Consensus 3 ~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 82 (160)
||..+.+||++|+++|+++++.|+++.+.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++
T Consensus 2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~----~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 77 (154)
T 2c2v_B 2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDE----SNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI 77 (154)
T ss_dssp CSCSCCHHHHHHHHHHHHSCCTTEEEEECS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEECC----CchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCc
Confidence 447889999999999999999999999876 7999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031420 83 FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 159 (160)
Q Consensus 83 ~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~ 159 (160)
|||||+.+|+||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus 78 ~HPnv~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~ 152 (154)
T 2c2v_B 78 YHPNVDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN 152 (154)
T ss_dssp CCTTBCTTCBBCCHHHHT--SCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ccCcCccCCeEEchhccC--CCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999987 899999999999999999999999999999999999999999999999999999953
No 9
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-52 Score=302.74 Aligned_cols=147 Identities=27% Similarity=0.544 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031420 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (160)
..+.+||++|+++|+++++.|+++.+.. +|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|++||
T Consensus 12 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 87 (158)
T 1zdn_A 12 PHIIRLVYKEVTTLTADPPDGIKVFPNE----EDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFH 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEECS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECC----CChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCccc
Confidence 7789999999999999999999999865 799999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 031420 85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 157 (160)
Q Consensus 85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 157 (160)
|||+.+|+||+++|.+ +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus 88 Pnv~~~G~iCl~iL~~--~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 88 PNVGANGEICVNVLKR--DWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp TTBCTTSBBCHHHHTT--TCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCEEehhhcCC--CCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999999999987 8999999999999999999999999999999999999999999999999999997
No 10
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=3.8e-52 Score=302.81 Aligned_cols=153 Identities=36% Similarity=0.726 Sum_probs=144.2
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031420 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (160)
|| +.|.+||++|+++|+++++.|+++.+..+ +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|
T Consensus 1 M~--~~a~~RL~kEl~~l~~~~~~gi~~~~~~~---~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t 75 (165)
T 2ucz_A 1 MS--KTAQKRLLKELQQLIKDSPPGIVAGPKSE---NNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTP 75 (165)
T ss_dssp -C--HHHHHHHHHHHHHHHHSCCTTEEEEESSS---SCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred CC--hHHHHHHHHHHHHHHhCCCCCEEEEECCC---CCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeC
Confidence 78 78999999999999999999999988642 69999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCceeecCCCC-----------CCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHH
Q 031420 81 GFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRV 149 (160)
Q Consensus 81 ~i~Hpnv~~~G~icl~~l~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~ 149 (160)
++|||||+.+|+||+++|.. .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++|
T Consensus 76 ~i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v 155 (165)
T 2ucz_A 76 SILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQV 155 (165)
T ss_dssp CCSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHH
T ss_pred CCccCCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHH
Confidence 99999999999999999941 2389999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC
Q 031420 150 RQQAKQYPP 158 (160)
Q Consensus 150 r~~~~~~~~ 158 (160)
|+|+++++.
T Consensus 156 ~~~~~~~~~ 164 (165)
T 2ucz_A 156 KLSILKSLG 164 (165)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 999999874
No 11
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.3e-52 Score=302.53 Aligned_cols=153 Identities=27% Similarity=0.522 Sum_probs=146.0
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc
Q 031420 3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF 82 (160)
Q Consensus 3 ~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 82 (160)
|+..+.+||++|+++|+++++.|+++.+.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++
T Consensus 1 gs~~~~~RL~kEl~~l~~~~~~gi~~~~~~----~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i 76 (169)
T 1yh2_A 1 GSMQRASRLKRELHMLATEPPPGITCWQDK----DQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPI 76 (169)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCTTEEEEESS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred CchHHHHHHHHHHHHHHhCCCCCEEEEeCC----CchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCC
Confidence 567899999999999999999999999876 7999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCceeecCCCC--CCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031420 83 FHPNVYPSGTVCLSILNE--DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 159 (160)
Q Consensus 83 ~Hpnv~~~G~icl~~l~~--~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~ 159 (160)
|||||+.+|+||+++|.. .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus 77 ~HPNv~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~ 155 (169)
T 1yh2_A 77 YHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ 155 (169)
T ss_dssp CBTTBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred ccccCCcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHccc
Confidence 999999999999999982 12899999999999999999999999999999999999999999999999999999963
No 12
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=9.3e-52 Score=300.59 Aligned_cols=147 Identities=33% Similarity=0.692 Sum_probs=143.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031420 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (160)
+.+.+||++|+++|+++++.|+++.+.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 95 (166)
T 2ayv_A 20 QGALKRINKELNDLSKDPPTNCSAGPVG----DDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYH 95 (166)
T ss_dssp TTHHHHHHHHHHHHHHSCCTTEEEEECS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcC----CCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcC
Confidence 5689999999999999999999999866 799999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 031420 85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 157 (160)
Q Consensus 85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 157 (160)
|||+.+|+||+++|.+ +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus 96 PNI~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 96 PNINSQGAICLDILKD--QWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp TTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCeEEcccccc--cCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999999999997 8999999999999999999999999999999999999999999999999999997
No 13
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=1.6e-51 Score=299.12 Aligned_cols=148 Identities=33% Similarity=0.685 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031420 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (160)
+.+.+||++|+++|+++++.|+++.+.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus 18 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~----~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~H 93 (165)
T 2c4o_A 18 SMALKRIHKELNDLARDPPAQCSAGPVG----DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 93 (165)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTEEEEESS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcC----CCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcC
Confidence 5689999999999999999999999866 799999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
|||+.+|+||+++|.+ +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus 94 PnV~~~G~ICl~iL~~--~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 94 PNINSNGSICLDILRS--QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp TTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCeEeehhhcC--CCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999997 89999999999999999999999999999999999999999999999999999984
No 14
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=1.7e-51 Score=297.69 Aligned_cols=152 Identities=30% Similarity=0.534 Sum_probs=143.9
Q ss_pred CCCchHHHHHHHHHHHHHHHc---CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeee
Q 031420 1 MSGGGIARGRLTEERKAWRKN---HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK 77 (160)
Q Consensus 1 ms~~~~~~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~ 77 (160)
|++++.+.+||++|+++|+++ ++.|+++.+.. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+
T Consensus 3 ~~Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~ 78 (159)
T 2bep_A 3 MAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVD----ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR 78 (159)
T ss_dssp -CCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECS----SSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred ccchHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCC----CchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEE
Confidence 444478999999999999985 57899998876 78999999999999999999999999999999999999999
Q ss_pred eccCccccccc-CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhc
Q 031420 78 FPQGFFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156 (160)
Q Consensus 78 f~t~i~Hpnv~-~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~ 156 (160)
|.|++|||||+ .+|+||+++|.+ +|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++|
T Consensus 79 f~t~i~HPni~~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~ 156 (159)
T 2bep_A 79 FITKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 156 (159)
T ss_dssp ESSCCCBTTBCTTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred eeCCCCccCCCCCCCEEeChhhhc--cCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 99999999999 599999999997 899999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 031420 157 PP 158 (160)
Q Consensus 157 ~~ 158 (160)
|.
T Consensus 157 a~ 158 (159)
T 2bep_A 157 AG 158 (159)
T ss_dssp SC
T ss_pred hc
Confidence 85
No 15
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=1.9e-51 Score=298.94 Aligned_cols=151 Identities=36% Similarity=0.674 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031420 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (160)
+.|.|||++|+++|+++++.|+++.+..+ +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~---~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 78 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNE---ENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFH 78 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEESST---TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCC---CCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCcc
Confidence 56899999999999999999999988762 599999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeecCCCC-----------CCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHH
Q 031420 85 PNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQA 153 (160)
Q Consensus 85 pnv~~~G~icl~~l~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~ 153 (160)
|||+.+|+||+++|.. +++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+
T Consensus 79 PNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~ 158 (164)
T 3h8k_A 79 PNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIV 158 (164)
T ss_dssp TTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCCCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHH
Confidence 9999999999999972 13899999999999999999999999999999999999999999999999999
Q ss_pred HhcCC
Q 031420 154 KQYPP 158 (160)
Q Consensus 154 ~~~~~ 158 (160)
+++++
T Consensus 159 ~~s~~ 163 (164)
T 3h8k_A 159 QKSLG 163 (164)
T ss_dssp HHHHT
T ss_pred HHhhc
Confidence 99864
No 16
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=8.1e-52 Score=296.48 Aligned_cols=147 Identities=35% Similarity=0.681 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031420 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (160)
Q Consensus 7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (160)
+.+||++|+++|+++++.|+++.+.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||||
T Consensus 2 ~~~RL~kEl~~l~~~~~~~i~~~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 77 (149)
T 2r0j_A 2 IPRRITKETQNLANEPPPGIMAVPVP----ENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPN 77 (149)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECC----CcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCC
Confidence 35899999999999999999999866 79999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031420 87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 159 (160)
Q Consensus 87 v~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~ 159 (160)
|+.+|+||+++|.+ +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus 78 v~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 78 IDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp BCTTCBBCCGGGTT--TCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEechhcCC--CCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 99999999999987 899999999999999999999999999999999999999999999999999999963
No 17
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-51 Score=296.85 Aligned_cols=147 Identities=34% Similarity=0.609 Sum_probs=142.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031420 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (160)
+.+.+||++|+++|+++++.|+++.+.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus 8 ~~~~~RL~kEl~~l~~~~~~~i~~~p~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 83 (156)
T 2e2c_A 8 HSVSKRLQQELRTLLMSGDPGITAFPDG----DNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWH 83 (156)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTEEEEESS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECC----CCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCccc
Confidence 4689999999999999999999998865 799999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
|||+.+|+||+++|.+ +|+|+++|.+||.+|+++|.+|++++|+|.+||++| +|+++|.++||+|+++|++
T Consensus 84 Pnv~~~G~iCl~iL~~--~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~ 154 (156)
T 2e2c_A 84 PNVDQSGNICLDILKE--NWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQS 154 (156)
T ss_dssp TTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred CCCccCceEECccccc--cCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhcc
Confidence 9999999999999987 899999999999999999999999999999999999 8999999999999999975
No 18
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=2e-51 Score=294.47 Aligned_cols=147 Identities=28% Similarity=0.587 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031420 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (160)
Q Consensus 7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (160)
+.+||++|+++|+++++.|+++.+..+ +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||||
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~---~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 78 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSE---SDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPN 78 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSS---SCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCC---CCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCC
Confidence 479999999999999999999998762 48999999999999999999999999999999999999999999999999
Q ss_pred ccC-CCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 87 VYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 87 v~~-~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
|+. +|+||+++|.+ +|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus 79 i~~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 79 ISSVTGAICLDILKN--AWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp BCSSSCCBCCHHHHT--SCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred CcCCCCeEeCCcCCC--CCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 997 99999999987 89999999999999999999999999999999999999999999999999999985
No 19
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=2.1e-51 Score=296.10 Aligned_cols=148 Identities=32% Similarity=0.634 Sum_probs=143.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031420 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (160)
+.+.+||++|+++|+++++.|+++.+.. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus 4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~~----~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 79 (155)
T 1jat_A 4 ASLPKRIIKETEKLVSDPVPGITAEPHD----DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYH 79 (155)
T ss_dssp CSCCHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECC----CchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeeccccc
Confidence 3568999999999999999999998876 799999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
|||+.+|+||+++|.+ +|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||.
T Consensus 80 Pnv~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~ 151 (155)
T 1jat_A 80 PNIDRLGRICLDVLKT--NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK 151 (155)
T ss_dssp TTBCTTCCBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSE
T ss_pred CCCCCCCEEEchhhcc--CCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 9999999999999987 89999999999999999999999999999999999999999999999999999995
No 20
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=9.4e-51 Score=303.85 Aligned_cols=151 Identities=30% Similarity=0.545 Sum_probs=142.9
Q ss_pred CCCchHHHHHHHHHHHHHHHc---CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeee
Q 031420 1 MSGGGIARGRLTEERKAWRKN---HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK 77 (160)
Q Consensus 1 ms~~~~~~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~ 77 (160)
|| +.|.+||++|+++|+++ ++.|+++.+.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+
T Consensus 2 Ms--~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~----~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~ 75 (201)
T 3k9o_A 2 MA--NIAVQRIKREFKEVLKSEETSKNQIKVDLVD----ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR 75 (201)
T ss_dssp ----CTTHHHHHHHHHHHHTCHHHHTTSEEEEECS----TTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred Cc--HHHHHHHHHHHHHHHhCCCCCCCCEEEEECC----CCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccc
Confidence 77 78999999999999886 46899999876 79999999999999999999999999999999999999999
Q ss_pred eccCccccccc-CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhc
Q 031420 78 FPQGFFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156 (160)
Q Consensus 78 f~t~i~Hpnv~-~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~ 156 (160)
|.|++|||||+ .+|+||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++|
T Consensus 76 f~t~i~HPnv~~~~G~iCl~iL~~--~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~ 153 (201)
T 3k9o_A 76 FITKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 153 (201)
T ss_dssp ESSCCCBTTBCTTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cccCcccCCCcCCCCeeeCccccc--CCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 99999999999 599999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 031420 157 PPV 159 (160)
Q Consensus 157 ~~~ 159 (160)
|+.
T Consensus 154 a~~ 156 (201)
T 3k9o_A 154 AGA 156 (201)
T ss_dssp HCC
T ss_pred ccc
Confidence 853
No 21
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-50 Score=300.05 Aligned_cols=148 Identities=30% Similarity=0.629 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHHHHHcCC-------------CCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCC
Q 031420 5 GIARGRLTEERKAWRKNHP-------------HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPS 71 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~-------------~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~ 71 (160)
..+.+||++|+++|+++++ .|+++.+.+ +|+++|+++|.||++|||+||+|+++|.||++||+
T Consensus 31 ~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~ 106 (193)
T 2f4z_A 31 PREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVG----GDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPY 106 (193)
T ss_dssp -CHHHHHHHHHHHHHHC----------------CEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcC----CCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCC
Confidence 4588999999999999887 799998876 79999999999999999999999999999999999
Q ss_pred CCCeeeeccCccccccc-CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHH
Q 031420 72 KPPKCKFPQGFFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVR 150 (160)
Q Consensus 72 ~pP~v~f~t~i~Hpnv~-~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r 150 (160)
+||+|+|.|++|||||+ .+|+||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||
T Consensus 107 ~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar 184 (193)
T 2f4z_A 107 NPPKMKFVTKIWHPNISSQTGAICLDILKH--EWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAK 184 (193)
T ss_dssp SCCEEEESSCCCBTTBCTTTCBBCCGGGTT--TCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHH
T ss_pred CCCeEEEecCCccCCCcCCCCEEECccccc--cCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHH
Confidence 99999999999999999 599999999988 899999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC
Q 031420 151 QQAKQYPP 158 (160)
Q Consensus 151 ~~~~~~~~ 158 (160)
+|+++||.
T Consensus 185 ~~t~~ya~ 192 (193)
T 2f4z_A 185 LWTETFAK 192 (193)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHcc
Confidence 99999996
No 22
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=3.8e-50 Score=298.39 Aligned_cols=148 Identities=34% Similarity=0.628 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031420 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (160)
+.+.+||++|+++|+++++.|+++.+.. +|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|++||
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 122 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKG----DNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYH 122 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeeccc----CccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCcc
Confidence 4578999999999999999999999876 799999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
|||+.+|+||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+|+++|.+|+++|.++||+|+++||.
T Consensus 123 PNV~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 123 CNINSQGVICLDILKD--NWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp TTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred ceECCCCceechhhhc--cCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9999999999999987 89999999999999999999999999999999999999999999999999999984
No 23
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-50 Score=296.66 Aligned_cols=147 Identities=33% Similarity=0.566 Sum_probs=141.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031420 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (160)
+.+.+||++|+++|+++++.|+++.+.. +|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++||
T Consensus 29 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 104 (179)
T 1i7k_A 29 GPVGKRLQQELMTLMMSGDKGISAFPES----DNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYH 104 (179)
T ss_dssp -CHHHHHHHHHHHHHHHCCTTEEEEEET----TEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCS
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcC----CcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCcc
Confidence 6789999999999999999999998866 799999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
|||+.+|+||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++| +|+++|.++||+++++++.
T Consensus 105 PNV~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~ 175 (179)
T 1i7k_A 105 PNVDTQGNISLDILKE--KWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVT 175 (179)
T ss_dssp TTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC
T ss_pred CccccCCeEEcccCcC--cCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhc
Confidence 9999999999999987 899999999999999999999999999999999999 9999999999999999874
No 24
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=1.6e-50 Score=304.55 Aligned_cols=149 Identities=31% Similarity=0.614 Sum_probs=144.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031420 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (160)
+.+.+||++|+++|+++++.|+++.+.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus 22 s~a~~RL~kEl~~l~~~~~~gi~~~p~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H 97 (216)
T 2pwq_A 22 SKELLRLQKELKDIENENVQEIDAHIKD----SNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH 97 (216)
T ss_dssp CHHHHHHHHHHHHHHHSCTTTEEEEECS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEEcC----CccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcC
Confidence 5789999999999999999999999876 799999999999999999999999999999999999999999999999
Q ss_pred cccc-CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031420 85 PNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 159 (160)
Q Consensus 85 pnv~-~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~ 159 (160)
|||+ .+|+||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus 98 PNI~~~~G~ICL~iL~~--~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~ 171 (216)
T 2pwq_A 98 PNISSQTGAICLDVLKN--EWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATG 171 (216)
T ss_dssp TTBCTTTCBBCCHHHHH--HCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CCCcCCCCEEEchhhcc--cCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 9999 599999999987 899999999999999999999999999999999999999999999999999999963
No 25
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=4.2e-50 Score=289.33 Aligned_cols=146 Identities=26% Similarity=0.570 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEE-eecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031420 6 IARGRLTEERKAWRKNHPHGFVA-KPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (160)
Q Consensus 6 ~~~~Rl~~E~~~l~~~~~~~~~~-~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (160)
.+.+||++|+++|+++++.|+++ .+.. +|+++|+++|. |++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~----~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 78 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPYLRNLSSDD----ANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYH 78 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTTEEEEEECS----SCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEecCC----CchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCcc
Confidence 47899999999999999999998 5555 89999999999 999999999999999999999999999999999999
Q ss_pred ccccCCCceeecCC-CCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 85 PNVYPSGTVCLSIL-NEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 85 pnv~~~G~icl~~l-~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
|||+.+|+||+++| .. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus 79 PnV~~~G~iCl~iL~~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~ 151 (155)
T 1wzv_A 79 PNVDENGQICLPIISSE--NWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV 151 (155)
T ss_dssp TTBCTTCBCCCGGGCTT--TCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCE
T ss_pred CcCCCCCeEeecCCCcc--CCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999 55 89999999999999999999999999999999999999999999999999999985
No 26
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=1.6e-49 Score=289.50 Aligned_cols=150 Identities=24% Similarity=0.474 Sum_probs=141.3
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031420 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (160)
+.+.+||++|+++|+++++.|+++.+... +|++.|+++| ||++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus 13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~---~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 88 (167)
T 3fn1_B 13 SVRDKLLVKEVAELEANLPCTCKVHFPDP---NKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWH 88 (167)
T ss_dssp CHHHHHHHHHHHHHGGGSCTTEEEECSSS---SCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCC---CcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCccc
Confidence 46899999999999999999999986432 7899999999 8999999999999999999999999999999999999
Q ss_pred ccccCCCceeecCCCC----CCCCCCcCCHHHHHHHHHHhhcC-CCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 85 PNVYPSGTVCLSILNE----DNGWRPAITVKQILVGIQDLLDQ-PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 85 pnv~~~G~icl~~l~~----~~~W~p~~~i~~vl~~i~~ll~~-p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
|||+.+|+||+++|.. .++|+|+++|.+||.+|+++|.+ |++++|+|.+|+++|++|+++|.++||+|+++||.
T Consensus 89 Pnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 89 PNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167 (167)
T ss_dssp SSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9999999999999975 24799999999999999999999 79999999999999999999999999999999984
No 27
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.7e-50 Score=292.27 Aligned_cols=146 Identities=29% Similarity=0.537 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031420 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (160)
+.+.+||++|+++|+++++.|+++.+.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus 22 ~~a~~RL~kEl~~l~~~~~~gi~~~p~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 97 (169)
T 1yrv_A 22 GRAYLLLHRDFCDLKENNYKGITAKPVS----EDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFH 97 (169)
T ss_dssp CHHHHHHHHHHHHHHHHCCTTEEEEECS----TTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcC----CccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCcc
Confidence 6789999999999999999999998876 799999999999999999999999999999999999999999999999
Q ss_pred ccc-cCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHh
Q 031420 85 PNV-YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 155 (160)
Q Consensus 85 pnv-~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~ 155 (160)
||| +.+|+||+++|...++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++ |++|++
T Consensus 98 PNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 98 PNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp TTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred CcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 999 7899999999982228999999999999999999999999999999999999999999999 888864
No 28
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=1.5e-49 Score=293.26 Aligned_cols=153 Identities=33% Similarity=0.619 Sum_probs=140.1
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031420 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (160)
|++ +.+.|||++|+++|+++++.|+++.+..+ +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|
T Consensus 3 m~~-~~a~kRL~kEl~~l~~~~~~gi~~~~~~~---~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 78 (183)
T 3rz3_A 3 MGS-PSSQKALLLELKGLQEEPVEGFRVTLVDE---GDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT 78 (183)
T ss_dssp --C-CHHHHHHHHHHHHHHHSCCTTEEEEECTT---CCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred Ccc-hHHHHHHHHHHHHHHhCCCCCEEEEecCc---cchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecC
Confidence 443 56899999999999999999999984332 79999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCceeecCCCC-----------CCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhh------CHH
Q 031420 81 GFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQ------DPA 143 (160)
Q Consensus 81 ~i~Hpnv~~~G~icl~~l~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~------~~~ 143 (160)
++|||||+.+|+||+++|.. .++|+|+++|++||.+|+++|.+|++++|+|.+|+.+|++ |++
T Consensus 79 ~i~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~ 158 (183)
T 3rz3_A 79 KMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDR 158 (183)
T ss_dssp CCCCTTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCC
T ss_pred CCccCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHH
Confidence 99999999999999999972 1389999999999999999999999999999999999998 789
Q ss_pred HHHHHHHHHHHhcC
Q 031420 144 EYKRRVRQQAKQYP 157 (160)
Q Consensus 144 ~f~~~~r~~~~~~~ 157 (160)
+|.+++|++|++++
T Consensus 159 ~y~~~v~~~v~~s~ 172 (183)
T 3rz3_A 159 EYTDIIRKQVLGTK 172 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
No 29
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=2.2e-49 Score=304.34 Aligned_cols=149 Identities=30% Similarity=0.540 Sum_probs=143.2
Q ss_pred hHHHHHHHHHHHHHHHc---CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccC
Q 031420 5 GIARGRLTEERKAWRKN---HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG 81 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (160)
+.+.+||++|+++|+++ ++.|+++.+.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+
T Consensus 56 ~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~----dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 131 (253)
T 3e46_A 56 NIAVQRIKREFKEVLKSEETSKNQIKVDLVD----ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK 131 (253)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTSEEEEECS----TTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCEEEEECC----CcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCC
Confidence 78999999999999886 47899999876 799999999999999999999999999999999999999999999
Q ss_pred ccccccc-CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031420 82 FFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 159 (160)
Q Consensus 82 i~Hpnv~-~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~ 159 (160)
+|||||+ .+|+||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus 132 i~HPNV~~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~ 208 (253)
T 3e46_A 132 IWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 208 (253)
T ss_dssp CCBTTBCTTTCBBCCGGGTT--CCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred CccCCccCCCCeeecccccC--CCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 9999999 599999999987 899999999999999999999999999999999999999999999999999999863
No 30
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=6.4e-50 Score=301.09 Aligned_cols=147 Identities=28% Similarity=0.586 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031420 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (160)
Q Consensus 7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (160)
+.+||++|+++|+++++.|+++.+..+ +++++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||||
T Consensus 3 a~~RL~kEl~~l~~~~~~gi~~~p~~~---~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPN 79 (215)
T 1tte_A 3 RAKRIMKEIQAVKDDPAAHITLEFVSE---SDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPN 79 (215)
T ss_dssp THHHHHHHHHHHHTTTCTTCEECCCSS---SSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCC---ccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCc
Confidence 689999999999999999999988652 46779999999999999999999999999999999999999999999999
Q ss_pred ccC-CCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 87 VYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 87 v~~-~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
|+. +|+||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 80 I~~~~G~ICL~iL~~--~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~ 150 (215)
T 1tte_A 80 ISSVTGAICLDILRN--AWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 150 (215)
T ss_dssp SCSSSSCCCSSTTTC--CSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSC
T ss_pred CcCCCCEEECccCCC--CCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 998 99999999987 89999999999999999999999999999999999999999999999999999995
No 31
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=7.8e-49 Score=286.86 Aligned_cols=152 Identities=27% Similarity=0.429 Sum_probs=138.1
Q ss_pred CCCchHHHHHHHHHHHHHHH-c-C------CC---CeEEee-cCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCC
Q 031420 1 MSGGGIARGRLTEERKAWRK-N-H------PH---GFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSED 68 (160)
Q Consensus 1 ms~~~~~~~Rl~~E~~~l~~-~-~------~~---~~~~~~-~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~ 68 (160)
|++++.+.+||++|+++|++ + + +. ++.+.+ .. +|+++|+++|.||++|||+||+|+++|.||++
T Consensus 1 ~~Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~----~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~ 76 (172)
T 2y9m_A 1 GAMADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDE----TDLSKWEAIISGPSDTPYENHQFRILIEVPSS 76 (172)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESST----TCTTEEEEEEECCTTSTTTTCEEEEEEECCTT
T ss_pred CCCcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCC----CchhEEEEEEECCCCCcccCCEEEEEEECCCc
Confidence 34448899999999999998 5 3 32 456666 33 79999999999999999999999999999999
Q ss_pred CCCCCCeeeecc-Cccccccc-CCCceeecCCC-CCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhh-CHHH
Q 031420 69 YPSKPPKCKFPQ-GFFHPNVY-PSGTVCLSILN-EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQ-DPAE 144 (160)
Q Consensus 69 YP~~pP~v~f~t-~i~Hpnv~-~~G~icl~~l~-~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~-~~~~ 144 (160)
||++||+|+|.| ++|||||+ .+|+||+++|. + +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++ |+++
T Consensus 77 YP~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~~~--~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~ 154 (172)
T 2y9m_A 77 YPMNPPKISFMQNNILHCNVKSATGEICLNILKPE--EWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSA 154 (172)
T ss_dssp TTTSCCEEEECTTSCCCTTEETTTTEECCGGGSTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHH
T ss_pred CCCCCCEEEEeeCCeecCCCcCCCCEEeccccCCC--CCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHH
Confidence 999999999999 99999996 79999999998 5 89999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhcCC
Q 031420 145 YKRRVRQQAKQYPP 158 (160)
Q Consensus 145 f~~~~r~~~~~~~~ 158 (160)
|.++||+|+++++.
T Consensus 155 f~~~~~~~~~~~~~ 168 (172)
T 2y9m_A 155 YQGIVKYFLAERER 168 (172)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999863
No 32
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=2.5e-49 Score=289.41 Aligned_cols=146 Identities=36% Similarity=0.616 Sum_probs=110.9
Q ss_pred chHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 031420 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF 83 (160)
Q Consensus 4 ~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 83 (160)
++.+.+||++|+++|+++++.|+++.+..+ +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|
T Consensus 15 ~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~---~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~ 91 (172)
T 2awf_A 15 VPRGSLLLRRQLAELNKNPVEGFSAGLIDD---NDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIW 91 (172)
T ss_dssp CCTTHHHHHHHHHHHHHSCCTTEEEEESST---TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC
T ss_pred hHHHHHHHHHHHHHHHhCCCCCEEEEECCC---ccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCc
Confidence 357899999999999999999999988652 69999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceeecCCCC-----------CCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHH-HHHHHHHH
Q 031420 84 HPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPA-EYKRRVRQ 151 (160)
Q Consensus 84 Hpnv~~~G~icl~~l~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~-~f~~~~r~ 151 (160)
||||+.+|+||+++|.. .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|++ +|.++||+
T Consensus 92 HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~ 171 (172)
T 2awf_A 92 HPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVAR 171 (172)
T ss_dssp CTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC----------------------------
T ss_pred cCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHh
Confidence 99999999999999973 2489999999999999999999999999999999999999999 99999997
Q ss_pred H
Q 031420 152 Q 152 (160)
Q Consensus 152 ~ 152 (160)
+
T Consensus 172 ~ 172 (172)
T 2awf_A 172 C 172 (172)
T ss_dssp -
T ss_pred C
Confidence 5
No 33
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=3e-49 Score=284.62 Aligned_cols=148 Identities=27% Similarity=0.590 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031420 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (160)
Q Consensus 7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (160)
|.+||++|+++|+++++.|+.+.+..+ +|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~---~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 78 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDE---ANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN 78 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSC---SSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCC---CchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCcccc
Confidence 679999999999999999998655332 79999999998 99999999999999999999999999999999999999
Q ss_pred ccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031420 87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 159 (160)
Q Consensus 87 v~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~ 159 (160)
|+.+|+||+++|..+ +|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus 79 v~~~G~iCl~iL~~~-~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (154)
T 1c4z_D 79 IDEKGQVCLPVISAE-NWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEK 150 (154)
T ss_dssp BCTTCBBCCTTTSSS-SCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC---
T ss_pred CCCCCEEECCCCCCC-CCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 999999999999732 899999999999999999999999999999999999999999999999999999963
No 34
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.3e-49 Score=289.08 Aligned_cols=148 Identities=28% Similarity=0.552 Sum_probs=136.9
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031420 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (160)
||+.+.+.+||++|+++|+. .|+++.+. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|
T Consensus 20 ms~~~~a~~RL~kEl~~l~~---~g~~v~~~-----ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t 91 (179)
T 2z5d_A 20 MSSPSPGKRRMDTDVIKLIE---SKHEVTIL-----GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMN 91 (179)
T ss_dssp ---CCHHHHHHHHHHHHHHH---SSSCEEEE-----EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred CCCchHHHHHHHHHHHhcCc---CCCEEEEC-----CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEec
Confidence 66445689999999999985 47777764 36799999999999999999999999999999999999999999
Q ss_pred CcccccccC-CCceeecCCCCCCCCCCcCCHHHHHHH-HHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 81 GFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVG-IQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 81 ~i~Hpnv~~-~G~icl~~l~~~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
++|||||+. +|+||+++|.+ +|+|+++|.+||.+ |+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus 92 ~i~HPNV~~~~G~ICL~iL~~--~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~ 169 (179)
T 2z5d_A 92 KIFHPNIDEASGTVCLDVINQ--TWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 169 (179)
T ss_dssp CCCBTTBCTTTCBBCHHHHHH--HCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSS
T ss_pred CCccCcCCCCCCeEecccccc--CCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 999999998 99999999987 89999999999999 999999999999999999999999999999999999999985
No 35
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=4.2e-49 Score=283.05 Aligned_cols=144 Identities=27% Similarity=0.557 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031420 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (160)
Q Consensus 7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn 86 (160)
+.+||++|+++++++ |+++.+.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||||
T Consensus 3 a~~Rl~kEl~~l~~~---~~~v~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 75 (152)
T 2onu_A 3 SLTRKQCDFTKLIMA---GYDLELNN----GSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPN 75 (152)
T ss_dssp CCCHHHHTHHHHHHH---TCCEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred HHHHHHHHHHhcCcC---CCEEEEcc----CccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCc
Confidence 579999999999875 67777765 79999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCceeecCCCCCCCCCCcCCHHHHHHH-HHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031420 87 VY-PSGTVCLSILNEDNGWRPAITVKQILVG-IQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 159 (160)
Q Consensus 87 v~-~~G~icl~~l~~~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~ 159 (160)
|+ .+|+||+++|.. +|+|++++.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus 76 i~~~~G~iCl~il~~--~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~ 148 (152)
T 2onu_A 76 VDEASGSVCLDVINQ--TWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASK 148 (152)
T ss_dssp BCTTTCBBCHHHHHH--HCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCG
T ss_pred CcCcCCeEecccccc--cCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 99 499999999987 89999999999998 6899999999999999999999999999999999999999963
No 36
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-47 Score=277.55 Aligned_cols=142 Identities=26% Similarity=0.556 Sum_probs=135.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEe-ecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 031420 5 GIARGRLTEERKAWRKNHPHGFVAK-PETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF 83 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 83 (160)
+.+.+||++|+++| +++.|+++. +.. +|+++|+++| ||++|||+||+|++.|.||++||++||+|+|.|++|
T Consensus 5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~----~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 77 (160)
T 1y8x_A 5 SAAQLRIQKDINEL--NLPKTCDISFSDP----DDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVY 77 (160)
T ss_dssp CHHHHHHHHHHHTC--CCCTTEEEECSST----TCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred cHHHHHHHHHHHhc--CCCCCeEEEeccC----CccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCc
Confidence 46899999999999 578899987 554 7999999998 999999999999999999999999999999999999
Q ss_pred cccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHh
Q 031420 84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 155 (160)
Q Consensus 84 Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~ 155 (160)
||||+.+|+||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||++++.
T Consensus 78 HPnv~~~G~iCl~iL~~--~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~ 147 (160)
T 1y8x_A 78 HPNIDLEGNVCLNILRE--DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 147 (160)
T ss_dssp BTTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred cCcCCCCCeEEcccchh--hccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 99999999999999987 89999999999999999999999999999999999999999999999999984
No 37
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.4e-47 Score=280.58 Aligned_cols=143 Identities=25% Similarity=0.528 Sum_probs=136.1
Q ss_pred chHHHHHHHHHHHHHHHcCCCCeEEe-ecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc
Q 031420 4 GGIARGRLTEERKAWRKNHPHGFVAK-PETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF 82 (160)
Q Consensus 4 ~~~~~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 82 (160)
++.+.+||++|+++| +++.|+++. +.. +|+++|+++| ||++|||+||+|++.|.||++||++||+|+|.|++
T Consensus 24 ~~~~~~RL~kEl~~l--~~~~~i~~~~p~~----~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i 96 (180)
T 2nvu_C 24 ASAAQLRIQKDINEL--NLPKTCDISFSDP----DDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV 96 (180)
T ss_dssp CCHHHHHHHHHHHTC--CCCTTEEEECSST----TCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCC
T ss_pred ccHHHHHHHHHHHhc--CCCCCeEEEeccc----ccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccC
Confidence 467899999999999 578899987 554 7999999998 99999999999999999999999999999999999
Q ss_pred ccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHh
Q 031420 83 FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 155 (160)
Q Consensus 83 ~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~ 155 (160)
|||||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||++++.
T Consensus 97 ~HPNV~~~G~iCl~iL~~--~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~ 167 (180)
T 2nvu_C 97 YHPNIDLEGNVALNILRE--DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 167 (180)
T ss_dssp CBTTBCTTSBBCCGGGTT--SCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHS
T ss_pred ccCCCCCCCcEEcccccc--cCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 999999999999999987 89999999999999999999999999999999999999999999999999985
No 38
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-47 Score=279.98 Aligned_cols=143 Identities=25% Similarity=0.445 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 031420 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP 85 (160)
Q Consensus 6 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp 85 (160)
.+.+||++|+++|++++. ++ +.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|||
T Consensus 12 ~~~~RL~~El~~l~~~~~-~v---~~~----~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HP 83 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-KV---YPS----DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHP 83 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-CE---EEC----SSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBT
T ss_pred cHHHHHHHHHHHHHhCCC-CC---CCC----CCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccc
Confidence 467999999999998873 43 223 7999999999999999999999999999999999999999999999999
Q ss_pred ccc-CCCceeecCCCCCCCCCCcCCHHHHHHHH-HHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 86 NVY-PSGTVCLSILNEDNGWRPAITVKQILVGI-QDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 86 nv~-~~G~icl~~l~~~~~W~p~~~i~~vl~~i-~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
||+ .+|+||+++|.+ +|+|+++|.+||.+| ++||.+|++++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 84 Ni~~~~G~iCl~iL~~--~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~ 156 (171)
T 1yf9_A 84 NVDERSGSVCLDVINQ--TWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHAT 156 (171)
T ss_dssp TBCTTTCBBCHHHHHH--HCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred cCcccCCeEecccccc--CCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 999 599999999987 899999999999997 79999999999999999999999999999999999999985
No 39
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=1.3e-46 Score=306.60 Aligned_cols=149 Identities=32% Similarity=0.648 Sum_probs=144.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031420 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (160)
+.|.|||++|+++|+++++.|+++.|.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~----~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 77 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVG----DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 77 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEET----TEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcC----CcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccc
Confidence 5789999999999999999999999876 799999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031420 85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 159 (160)
Q Consensus 85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~ 159 (160)
|||+.+|+||+++|.. +|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus 78 Pnv~~~G~iCl~il~~--~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~ 150 (399)
T 4ddg_A 78 PNINSNGSISLDILRS--QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMG 150 (399)
T ss_dssp TTBCTTCBBCCGGGTT--SCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSC
T ss_pred cccCCCCeEeCccccc--CCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhcc
Confidence 9999999999999987 899999999999999999999999999999999999999999999999999999963
No 40
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=3e-46 Score=276.79 Aligned_cols=144 Identities=31% Similarity=0.537 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEe----ecCCCCCCCcc---eEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeee
Q 031420 5 GIARGRLTEERKAWRKNHPHGFVAK----PETKDGSVNLM---IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK 77 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~----~~~~~~~~~~~---~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~ 77 (160)
+.|.+||++|+++|+ ++.|+++. +.. +|++ +|+++|. |++|||+||+|++.|.||++||++||+|+
T Consensus 28 s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~----~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~ 100 (190)
T 3o2u_A 28 SAARIRLKRDLDSLD--LPPTVTLNVITSPDS----ADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVV 100 (190)
T ss_dssp CHHHHHHHHHHHTCC--CCTTEEEEEEECTTC----CCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEE
T ss_pred cHHHHHHHHHHHhcc--CCCCEEEEecCCCCC----ccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeE
Confidence 568999999999997 77899987 544 7999 9999997 88899999999999999999999999999
Q ss_pred eccCcccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 031420 78 FPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 157 (160)
Q Consensus 78 f~t~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 157 (160)
|.|++|||||+.+|+||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|++.+.
T Consensus 101 f~t~i~HPnV~~~G~iCl~iL~~--~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~~ 178 (190)
T 3o2u_A 101 CLKKIFHPNIDLKGNVCLNILRE--DWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGS 178 (190)
T ss_dssp ECSCCCCTTBCTTSBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTCE
T ss_pred EecCcccCCCCCCCeEechhccC--CCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999987 8999999999999999999999999999999999999999999999999997653
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=7.9e-46 Score=269.88 Aligned_cols=143 Identities=20% Similarity=0.451 Sum_probs=133.0
Q ss_pred CCCchHHHHHHHHHHHHHHHcC------------CCCeEEeecCCCCCCCcceEEEEEcCCCCCCCC--CCEEEEEEEeC
Q 031420 1 MSGGGIARGRLTEERKAWRKNH------------PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWE--GGYFPLTLYFS 66 (160)
Q Consensus 1 ms~~~~~~~Rl~~E~~~l~~~~------------~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~--gg~f~~~i~fp 66 (160)
|| +.+.|||++|+++|++++ +.++.+.+.. +|+++|+++|.||++|||+ ||.|++.|.||
T Consensus 5 Ms--~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~----~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp 78 (167)
T 4ds2_A 5 MK--NISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDT----DTIYNWILKVKAPADSVYGGAGNTYQLSVLFS 78 (167)
T ss_dssp CC--CCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEE----SSTTEEEEEEECCTTSGGGTTCCEEEEEEECC
T ss_pred cc--HHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCC----CcccEEEEEEECCCCCCccCCCCEEEEEEECC
Confidence 67 778999999999999987 6788888876 8999999999999999999 99999999999
Q ss_pred CCCCCCCCeeeeccCcccccccCCCceeecCCCCCCCCCCcCCHHHHHH-HHHHhhcC--CCCCCccCHHHHHHHhhCHH
Q 031420 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILV-GIQDLLDQ--PNPADPAQTDGYQLFIQDPA 143 (160)
Q Consensus 67 ~~YP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~-~i~~ll~~--p~~~~p~n~~a~~~~~~~~~ 143 (160)
++||++||+|+|.|++|||||+.+|+||+++|.. +|+|++++.++|. .|++++.+ |++++|+|.+||++|++|++
T Consensus 79 ~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~--~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~ 156 (167)
T 4ds2_A 79 DDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVND--FWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQ 156 (167)
T ss_dssp TTTTTSCCEEEESSCCCCSSCCTTSCCCTHHHHT--TCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHH
T ss_pred CCCCCCCCEEEEeCCcccccCCCCCEEEcccCcC--CCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHH
Confidence 9999999999999999999999999999999987 8999999999754 67777764 89999999999999999999
Q ss_pred HHHHHHHH
Q 031420 144 EYKRRVRQ 151 (160)
Q Consensus 144 ~f~~~~r~ 151 (160)
+|.++||+
T Consensus 157 ~f~~~vrr 164 (167)
T 4ds2_A 157 DFAARVRR 164 (167)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 99999983
No 42
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=4.2e-43 Score=276.46 Aligned_cols=150 Identities=30% Similarity=0.560 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCC----eEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031420 5 GIARGRLTEERKAWRKNHPHG----FVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~----~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (160)
..+.+||++|+++|+++++.| +.+.+.. +|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|
T Consensus 75 ~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~e----dnl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T 150 (323)
T 3ceg_A 75 AARARRLAQEAVTLSTSLPLSSSSSVFVRCDE----ERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET 150 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCSSCCEEEEEES----SCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCCCcccceeecccC----CCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEec
Confidence 789999999999999998875 4444544 79999999999999999999999999999999999999999999
Q ss_pred C-----cccccccCCCceeecCCCC-----CCCCCCcC-CHHHHHHHHHHhhc--CCCCCCccCHHH--HHHHhhCHHHH
Q 031420 81 G-----FFHPNVYPSGTVCLSILNE-----DNGWRPAI-TVKQILVGIQDLLD--QPNPADPAQTDG--YQLFIQDPAEY 145 (160)
Q Consensus 81 ~-----i~Hpnv~~~G~icl~~l~~-----~~~W~p~~-~i~~vl~~i~~ll~--~p~~~~p~n~~a--~~~~~~~~~~f 145 (160)
+ +|||||+.+|+||+++|.. .++|+|++ +|.+||.+|++||. +|++++|+|.++ +.++.+|+++|
T Consensus 151 ~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y 230 (323)
T 3ceg_A 151 TGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREY 230 (323)
T ss_dssp STTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHH
T ss_pred cCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHH
Confidence 8 9999999999999999972 13899999 89999999999995 777899999987 57899999999
Q ss_pred HHHHHHHHHhcCC
Q 031420 146 KRRVRQQAKQYPP 158 (160)
Q Consensus 146 ~~~~r~~~~~~~~ 158 (160)
.++||+|+.+||.
T Consensus 231 ~~~vr~~t~k~A~ 243 (323)
T 3ceg_A 231 DGNIRQATVKWAM 243 (323)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999984
No 43
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=1.1e-43 Score=255.42 Aligned_cols=133 Identities=25% Similarity=0.434 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHHHHHc-CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 031420 5 GIARGRLTEERKAWRKN-HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF 83 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~-~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 83 (160)
..+.+||++|+++++++ ++.|+++.+... ++.|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~-~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~ 98 (156)
T 2q0v_A 20 VPRSFRLLDELERGQKGNVSEGVSFGLESA-DDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIE 98 (156)
T ss_dssp CCHHHHHHHHHHHHHCC-CCTTEEEEESST-TCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEECCC-ccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccc
Confidence 45889999999999998 788999887542 2247999999999999999999999999999999999999999999999
Q ss_pred cccccCCCce---eecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhC
Q 031420 84 HPNVYPSGTV---CLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQD 141 (160)
Q Consensus 84 Hpnv~~~G~i---cl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~ 141 (160)
||||+.+|+| |+++|. +|+|+++|.+||.+|+++|.+|++++|+|.+|+.+|.+|
T Consensus 99 HPNV~~~G~icisCL~iL~---~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 99 MSCVDNCGRVIKNNLHILK---NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp CTTBCTTSBBCGGGSHHHH---TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred cCCCccCCeEehhhccccc---CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 9999999999 888885 499999999999999999999999999999999988765
No 44
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=4.3e-42 Score=239.23 Aligned_cols=117 Identities=26% Similarity=0.515 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc-cc
Q 031420 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-FH 84 (160)
Q Consensus 6 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~H 84 (160)
.|.+||++|+++++++++.|+++.+.. +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++ ||
T Consensus 6 ~a~~RL~kEl~~l~~~~~~~~~~~~~~----~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~H 81 (125)
T 2fo3_A 6 NANYRIQKELHNFLNNPPINCTLDVHP----NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKH 81 (125)
T ss_dssp ---CHHHHHHHHHHHSCCTTEEEEECT----TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCB
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCc----chhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCC
Confidence 478999999999999999999998865 7999999999999999999999999999999999999999999996 99
Q ss_pred ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCC
Q 031420 85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 128 (160)
Q Consensus 85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~ 128 (160)
|||+.+|+||+++|.+ +|+|++++.+||.+|+++|.+|+...
T Consensus 82 Pnv~~~G~iCl~iL~~--~W~P~~~i~~vl~si~~ll~~p~~~~ 123 (125)
T 2fo3_A 82 THVYSNGDICLSLLGD--DYNPSLSISGLVLSIISMLSSAKEKK 123 (125)
T ss_dssp TTBCTTSBBCCGGGTT--TCCTTCCHHHHHHHHHHHHC------
T ss_pred CcCCCCCEEEchhcCC--CCCCCCcHHHHHHHHHHHHhCccccc
Confidence 9999999999999987 89999999999999999999988653
No 45
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=2.4e-43 Score=249.49 Aligned_cols=133 Identities=24% Similarity=0.393 Sum_probs=116.8
Q ss_pred CCCchHHHHHHHHHHHHHHHc-CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeec
Q 031420 1 MSGGGIARGRLTEERKAWRKN-HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP 79 (160)
Q Consensus 1 ms~~~~~~~Rl~~E~~~l~~~-~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 79 (160)
||. ..+.+||++|+++++++ ++.|+++.+... ++.|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.
T Consensus 2 m~~-~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~-~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 79 (138)
T 1jat_B 2 MSK-VPRNFRLLEELEKGEKGFGPESCSYGLADS-DDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFI 79 (138)
T ss_dssp -CC-CCHHHHHHHHHHHHHC----CCEEEEESST-TCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred cch-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCC-CCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEE
Confidence 663 46789999999999998 788999888542 224699999999999999999999999999999999999999999
Q ss_pred cCcccccccCC-Cce--eecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHH
Q 031420 80 QGFFHPNVYPS-GTV--CLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF 138 (160)
Q Consensus 80 t~i~Hpnv~~~-G~i--cl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~ 138 (160)
|++|||||+.+ |+| |+++|. +|+|++++.+||.+|+++|.+|++++|+|.+|+.+|
T Consensus 80 t~i~HPnv~~~~G~i~~cL~~l~---~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 80 SKINLPCVNPTTGEVQTDFHTLR---DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp BCCCCTTBCTTTCBBCTTSHHHH---TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred cccccCCEeCCCCEEeeecccCC---CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 99999999985 999 898875 599999999999999999999999999999987643
No 46
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=8.6e-42 Score=246.22 Aligned_cols=128 Identities=23% Similarity=0.343 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCC-eEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 031420 5 GIARGRLTEERKAWRKNHPHG-FVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF 83 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~-~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 83 (160)
..+.+||++|+++|+++++.| +.+.+..+ ++.|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|
T Consensus 24 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~-~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~ 102 (160)
T 2a4d_A 24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDD-EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN 102 (160)
T ss_dssp HHHHHHHHHHHHHHHSCCTTSSEEEEESST-TCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEecCC-ccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCce
Confidence 468899999999999998888 66665331 1125999999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCceeecCCC--CCCCCCCcCCHHHHHHHHHHhh-cCCCCCCccCHHHH
Q 031420 84 HPNVY-PSGTVCLSILN--EDNGWRPAITVKQILVGIQDLL-DQPNPADPAQTDGY 135 (160)
Q Consensus 84 Hpnv~-~~G~icl~~l~--~~~~W~p~~~i~~vl~~i~~ll-~~p~~~~p~n~~a~ 135 (160)
||||+ .+|+||+++|. + +|+|+++|++||.+|+++| .+|++++|+|.|||
T Consensus 103 HPNV~~~~G~ICl~iL~~~~--~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 103 MNGVNSSNGVVDPRAISVLA--KWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp CTTBCTTTCBBCGGGSHHHH--TCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred eCCEECCCCEEehhhcCCcc--CCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 99999 69999999997 5 8999999999999999999 57999999999987
No 47
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3.1e-41 Score=237.96 Aligned_cols=116 Identities=27% Similarity=0.544 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc-c
Q 031420 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-F 83 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~ 83 (160)
+.+.+||++|+++++++++.|+++.+.. +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++ |
T Consensus 19 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~----~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~ 94 (136)
T 2h2y_A 19 GNANYRIQKELNNFLKNPPINCTIDVHP----SNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPK 94 (136)
T ss_dssp TSHHHHHHHHHHHHHHSCCTTEEEEECT----TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCC
T ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEecc----ccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCC
Confidence 4588999999999999999999998865 7999999999999999999999999999999999999999999996 9
Q ss_pred cccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCC
Q 031420 84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126 (160)
Q Consensus 84 Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~ 126 (160)
||||+.+|+||+++|.+ +|+|++++.+||.+|+++|.+|+.
T Consensus 95 HPnv~~~G~ICl~iL~~--~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 95 HTHVYSNGDICLSVLGD--DYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp CTTBCTTCCBCCGGGTT--TCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred CCcCCCCCEEECccccC--CCCCCCcHHHHHHHHHHHHhCcCc
Confidence 99999999999999987 899999999999999999998874
No 48
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=3e-41 Score=245.79 Aligned_cols=128 Identities=23% Similarity=0.334 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHHHHcCCCC-eEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 031420 5 GIARGRLTEERKAWRKNHPHG-FVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF 83 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~-~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 83 (160)
..+.+||++|+++|+++++.| +.+.+..+ ++.|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|
T Consensus 34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~-~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~ 112 (170)
T 2hlw_A 34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDD-EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN 112 (170)
T ss_dssp CCHHHHHHHHHHHHHHCCGGGCEEEEESST-TCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcEEEEecCc-ccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccc
Confidence 358999999999999998888 56655331 1125999999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCceeecCCC--CCCCCCCcCCHHHHHHHHHHhhc-CCCCCCccCHHHH
Q 031420 84 HPNVY-PSGTVCLSILN--EDNGWRPAITVKQILVGIQDLLD-QPNPADPAQTDGY 135 (160)
Q Consensus 84 Hpnv~-~~G~icl~~l~--~~~~W~p~~~i~~vl~~i~~ll~-~p~~~~p~n~~a~ 135 (160)
||||+ .+|+||+++|. . +|+|+++|.+||.+|+++|. .|++++|+|.|||
T Consensus 113 HPNV~~~~G~ICl~iL~~~~--~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 113 MNGVNSSNGVVDPRAISVLA--KWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp CSSBCSSSCBBCTTTCHHHH--TCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred cCCEeCCCCEEEhhhcCCCC--CCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 99999 79999999997 5 89999999999999999996 5999999999986
No 49
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-40 Score=233.78 Aligned_cols=109 Identities=34% Similarity=0.660 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHcCCCCeEEe--ecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc--
Q 031420 8 RGRLTEERKAWRKNHPHGFVAK--PETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF-- 83 (160)
Q Consensus 8 ~~Rl~~E~~~l~~~~~~~~~~~--~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~-- 83 (160)
.+||++|+++++++++.|+++. +.+ +|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|
T Consensus 24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~ 99 (136)
T 2a7l_A 24 QKRLQKELLALQNDPPPGMTLNEKSVQ----NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPV 99 (136)
T ss_dssp CHHHHHHHHHHHHSCCTTCCCCTTCCC----CSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCc----cccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCC
Confidence 4999999999999999999864 444 79999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhc
Q 031420 84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122 (160)
Q Consensus 84 Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~ 122 (160)
||||+.+|+||+++|.+ +|+|+++|++||.+|+++|.
T Consensus 100 HPNV~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 100 HPHVYSNGHICLSILTE--DWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp BTTBCTTCBBCCGGGTT--TCCTTSCHHHHHHHHHHHTC
T ss_pred CccCCCCCeEEchhcCC--CCCCCCcHHHHHHHHHHHhC
Confidence 99999999999999987 89999999999999999973
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.8e-38 Score=232.80 Aligned_cols=118 Identities=27% Similarity=0.501 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031420 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (160)
Q Consensus 5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (160)
+.+.+||++|+++|+++++.|+++.+.. +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+ |
T Consensus 13 ~~a~~RL~kEl~~l~~~~~~~i~~~p~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~ 86 (187)
T 2f4w_A 13 TTATQRLKQDYLRIKKDPVPYICAEPLP----SNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--N 86 (187)
T ss_dssp -CHHHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--C
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcC----CccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--C
Confidence 3588999999999999999999998876 799999999999999999999999999999999999999999999 9
Q ss_pred ccccCCCceeecCCCC-CCCCCCcCCHHHHHHHHHHhhcCCCCCC
Q 031420 85 PNVYPSGTVCLSILNE-DNGWRPAITVKQILVGIQDLLDQPNPAD 128 (160)
Q Consensus 85 pnv~~~G~icl~~l~~-~~~W~p~~~i~~vl~~i~~ll~~p~~~~ 128 (160)
|+|+.+|+||+++|.. .++|+|+++|.+||.+|+++|.+|+++.
T Consensus 87 ~~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~ 131 (187)
T 2f4w_A 87 GRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTL 131 (187)
T ss_dssp SSBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCT
T ss_pred ceeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 9999999999999942 1289999999999999999999988864
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=4.4e-40 Score=242.90 Aligned_cols=140 Identities=18% Similarity=0.339 Sum_probs=122.5
Q ss_pred chHHHHHHHHHHHHHHHcC---CCCeEEeecCCCCCCCcceEEEEEcCC-CCCCCCC-----------CEEEEEEEeCCC
Q 031420 4 GGIARGRLTEERKAWRKNH---PHGFVAKPETKDGSVNLMIWECIIPGK-TGTDWEG-----------GYFPLTLYFSED 68 (160)
Q Consensus 4 ~~~~~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~~~~~w~~~i~Gp-~~tpy~g-----------g~f~~~i~fp~~ 68 (160)
+..+.+||++|+++|++++ +.++++.+.. +|+++|+++|.|| ++|||+| |.|++.|.||++
T Consensus 25 s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~----dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~ 100 (186)
T 1zuo_A 25 SVQASDRLMKELRDIYRSQSYKTGIYSVELIN----DSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDN 100 (186)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEET----TEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTT
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcC----CccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCC
Confidence 3789999999999999987 6889998876 7999999999997 9999998 899999999999
Q ss_pred CCCCCCeeeeccCcccc-cccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHH
Q 031420 69 YPSKPPKCKFPQGFFHP-NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 147 (160)
Q Consensus 69 YP~~pP~v~f~t~i~Hp-nv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~ 147 (160)
||++||+|+|.+++||| ||+.+|+||+++|..+ +|+|+++|.+||.+|+++|.+|+... .+..++.+|.+
T Consensus 101 YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~-~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~ 171 (186)
T 1zuo_A 101 FPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQ-GWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQYNL 171 (186)
T ss_dssp TTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTT-TCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCH
T ss_pred CCCCCCeEEEeCCccCCCccCCCCcEEeccCCCC-CCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhH
Confidence 99999999999999999 6999999999999742 89999999999999999998886533 34445667777
Q ss_pred HHHHHHHhc
Q 031420 148 RVRQQAKQY 156 (160)
Q Consensus 148 ~~r~~~~~~ 156 (160)
++++++.+.
T Consensus 172 ~~~~~~~~~ 180 (186)
T 1zuo_A 172 ARAQQSYNS 180 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666553
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.95 E-value=2.9e-29 Score=178.83 Aligned_cols=98 Identities=20% Similarity=0.340 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCC----------EEEEEEEeCCCCCCCCCeee
Q 031420 8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG----------YFPLTLYFSEDYPSKPPKCK 77 (160)
Q Consensus 8 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~ 77 (160)
.+||++|++.|++. +.+.. +|++.|.+.+.||+||+|+|| .|+++|.||++||.+||+|+
T Consensus 34 ~~RL~eE~k~L~k~------v~p~k----~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~ 103 (172)
T 2z6o_A 34 VQRLKEEYQSLIRY------VENNK----NADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIA 103 (172)
T ss_dssp HHHHHHHHHHHHHH------HHHHH----HTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred HHHHHHHHHHHHHH------hccCc----cccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeee
Confidence 89999999999883 44444 688999999999999999999 99999999999999999999
Q ss_pred eccC-cccccccCCCceeecCCCCC--CCCCCcCCHHHHHH
Q 031420 78 FPQG-FFHPNVYPSGTVCLSILNED--NGWRPAITVKQILV 115 (160)
Q Consensus 78 f~t~-i~Hpnv~~~G~icl~~l~~~--~~W~p~~~i~~vl~ 115 (160)
|.+. +||||||.+|+||+++|..+ ..|+|+++|.++|.
T Consensus 104 F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~ 144 (172)
T 2z6o_A 104 VPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMA 144 (172)
T ss_dssp CGGGTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred eCCCCCCCCCCCCCCcEechhhccccccccCCccCHHHHHh
Confidence 9997 99999999999999999542 14559999999984
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.82 E-value=4.4e-20 Score=132.57 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHcCC-C--CeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCE---EEEEEEeCCCCCCCCCeeeecc--
Q 031420 9 GRLTEERKAWRKNHP-H--GFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY---FPLTLYFSEDYPSKPPKCKFPQ-- 80 (160)
Q Consensus 9 ~Rl~~E~~~l~~~~~-~--~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t-- 80 (160)
+|..+|+.++.+.-+ . ...+.... +....+.+.+.|.-.++|+|++ |.+.|.||++||++||.|.|.+
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~----dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t 106 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHS----DGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLEN 106 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECT----TSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGG
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcC----CCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCC
Confidence 677788877766432 1 12122222 4445556666665668999998 8899999999999999998865
Q ss_pred -----C---cc-cccccCCCceeecCCCCCCCCCC-cCCHHHHHHHHHHhhcCCCCCC
Q 031420 81 -----G---FF-HPNVYPSGTVCLSILNEDNGWRP-AITVKQILVGIQDLLDQPNPAD 128 (160)
Q Consensus 81 -----~---i~-Hpnv~~~G~icl~~l~~~~~W~p-~~~i~~vl~~i~~ll~~p~~~~ 128 (160)
+ ++ |||||.+|+||+++|. +|++ +.++.++|.+|.++|.+|+++.
T Consensus 107 ~~m~~~~~~I~~hpnVD~~G~I~lpyL~---~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 107 FDMNTISSSLPIQEYIDSNGWIALPILH---AWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp CCTTTSCTTSTHHHHBCTTSBBCCGGGG---SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred ccccccccccCCCCCCCCCCcEeCcccc---cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 1 77 9999999999999994 5999 5799999999999999999875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.72 E-value=1.2e-18 Score=121.67 Aligned_cols=82 Identities=23% Similarity=0.432 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCC----------EEEEEEEeCCCCCCCCCee
Q 031420 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG----------YFPLTLYFSEDYPSKPPKC 76 (160)
Q Consensus 7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v 76 (160)
=..||+.||..|-+. +. ... .+-..|...+.||+||+|.|+ .|++.|.||.+||.+||+|
T Consensus 35 w~~RlkeEy~alI~y------v~-~nK---~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI 104 (168)
T 3kpa_A 35 WTARLKEEYASLITY------VE-HNK---ASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEI 104 (168)
T ss_dssp HHHHHHHHHHHHHHH------HH-HHH---HTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCC
T ss_pred HHHHHHHHHHHHHHH------HH-hcc---cccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEe
Confidence 368999999998432 11 111 233568888899999999999 8999999999999999999
Q ss_pred eeccC-cccccccCCCceeecCC
Q 031420 77 KFPQG-FFHPNVYPSGTVCLSIL 98 (160)
Q Consensus 77 ~f~t~-i~Hpnv~~~G~icl~~l 98 (160)
+|.+. .+||++|.+|+||++++
T Consensus 105 ~Fp~ldgkt~kmYr~GkICLdIh 127 (168)
T 3kpa_A 105 ALPELEGKTVKMYRGGKICMTTH 127 (168)
T ss_dssp BCGGGTTTCSSEETTTEECCCTT
T ss_pred ecccccCcCccccCCCcEEeccc
Confidence 99994 89999999999999985
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.60 E-value=6.7e-15 Score=103.90 Aligned_cols=102 Identities=22% Similarity=0.359 Sum_probs=78.8
Q ss_pred HHHHHHHHHcCCC-CeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEE--EEEeCCCCCCCCCeeeeccC------c
Q 031420 12 TEERKAWRKNHPH-GFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL--TLYFSEDYPSKPPKCKFPQG------F 82 (160)
Q Consensus 12 ~~E~~~l~~~~~~-~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~------i 82 (160)
.+|+..+.+.-+. ........ ....++..|.++|. .+|+|++|.+ .|.||++||++||.| |.++ .
T Consensus 26 ~~dv~~vl~~yp~L~p~~~~y~-G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~ 99 (146)
T 3obq_A 26 VRETVNVITLYKDLKPVLDSYG-TGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIK 99 (146)
T ss_dssp HHHHHHHHHHCTTEEEEEEESS-STTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEEC
T ss_pred HHHHHHHHHhCCCCceEeeeee-CChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEEC
Confidence 4566666554321 12221111 33478999999997 5799999995 899999999999999 5544 4
Q ss_pred ccccccCCCceeecCCCCCCCCCC-cCCHHHHHHHHHHhhc
Q 031420 83 FHPNVYPSGTVCLSILNEDNGWRP-AITVKQILVGIQDLLD 122 (160)
Q Consensus 83 ~Hpnv~~~G~icl~~l~~~~~W~p-~~~i~~vl~~i~~ll~ 122 (160)
.|||||.+|+||++.|.. |++ ..++.+++..++++|.
T Consensus 100 ~~~~Vd~~G~i~lpyL~~---W~~~~snL~~ll~~l~~~F~ 137 (146)
T 3obq_A 100 TGKHVDANGKIYLPYLHE---WKHPQSDLLGLIQVMIVVFG 137 (146)
T ss_dssp CBTTBCTTCBBCCHHHHT---CCTTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCEecccccc---cCCCCCCHHHHHHHHHHHHh
Confidence 899999999999999954 988 7899999999999994
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.35 E-value=0.0025 Score=43.16 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031420 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (160)
...+...|+..|..--+..+... . .....+.+.+....+..-+.-.+.+.|.||++||.+||.+.+..
T Consensus 11 ~~e~q~~EleaL~sIy~d~~~~~--~----~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 11 YGEEQRNELEALESIYPDSFTVL--S----ENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEC--C----SSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHccCceEEc--c----CCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 45677889999977655555432 1 22356666665322222234478899999999999999998644
No 57
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=96.20 E-value=0.062 Score=36.10 Aligned_cols=70 Identities=16% Similarity=0.119 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCC--CCCEEEEEEEeCCCCCCCCCeeeecc
Q 031420 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDW--EGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 9 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (160)
.+...|+..|..--+..+...... .......+.+.+..+.+..- ..-.+.+.|.+|++||..+|.+...+
T Consensus 11 e~~~~EleaL~SIY~de~~~~~~~--~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 11 WVLPSEVEVLESIYLDELQVIKGN--GRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp CHHHHHHHHHHHHSTTTEEEECCT--TSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEecCC--CCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence 467889998877655555543211 00123455566653222111 12478899999999999999998765
No 58
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=95.95 E-value=0.053 Score=39.25 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccccc
Q 031420 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 88 (160)
Q Consensus 9 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~ 88 (160)
++|.+|+.++ |+.-.... | .++...++.+... .|..+.++|.++.+||.++|.+...-+. |.
T Consensus 4 ~~li~Ei~~i------GW~~l~~i-d--~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~-- 65 (186)
T 3zqs_A 4 SSLIEEIGTL------GWDKLVYA-D--TCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPV--PF-- 65 (186)
T ss_dssp CSHHHHHHHH------CGGGEEEE-C--TTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSS--CC--
T ss_pred HHHHHHHHHh------CCceeeee-c--CCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCC--Cc--
Confidence 3678888888 32211111 1 6788888888732 3689999999999999999988665442 11
Q ss_pred CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhh
Q 031420 89 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121 (160)
Q Consensus 89 ~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll 121 (160)
.. .|++..++.+++...+..+
T Consensus 66 ----------~~--~w~~~ssL~~v~~qF~~~L 86 (186)
T 3zqs_A 66 ----------CA--SWTPQSSLISIYSQFLAAI 86 (186)
T ss_dssp ----------CC--CCCTTCCHHHHHHHHHHHH
T ss_pred ----------cc--ccCCCccHHHHHHHHHHHH
Confidence 12 6999999999988777665
No 59
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.073 Score=36.25 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHcCCCCeEEeecCCC--CCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031420 8 RGRLTEERKAWRKNHPHGFVAKPETKD--GSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 8 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~--~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (160)
..+-..|+..|..--+..+........ .......+.+.+.+..+ .-..-.+.+.|.+|++||..||.|.+.+
T Consensus 12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 12 YEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp HHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred HHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 345567888886644444332110000 00123556777763222 1123478899999999999999998754
No 60
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.18 E-value=0.051 Score=36.59 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHcCCC--CeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeec
Q 031420 9 GRLTEERKAWRKNHPH--GFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP 79 (160)
Q Consensus 9 ~Rl~~E~~~l~~~~~~--~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 79 (160)
.+...|+..|..--+. .+...... ..+...+.+.+... +..-..-.+.+.|.+|++||..||.+...
T Consensus 10 e~q~~EleaL~SIy~d~~e~~~~~~~---~~~~~~f~i~l~~~-~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 10 EPVQEELSVLAAIFCRPHEWEVLSRS---ETDGTVFRIHTKAE-GFMDADIPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp HHHHHHHHHHHHHHCCTTTCCCSEEC---SSSCEEEEEEEECC-TTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCceEEecCC---CCCCCeEEEEecCC-CCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence 4567788888664322 23221100 02235677777632 21011247899999999999999998764
No 61
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=94.71 E-value=0.27 Score=34.25 Aligned_cols=23 Identities=13% Similarity=0.077 Sum_probs=20.8
Q ss_pred EEEEEEEeCCCCCCCCCeeeecc
Q 031420 58 YFPLTLYFSEDYPSKPPKCKFPQ 80 (160)
Q Consensus 58 ~f~~~i~fp~~YP~~pP~v~f~t 80 (160)
.+.+.|.+|.+||..+|.|....
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 79999999999999999998654
No 62
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=93.93 E-value=0.63 Score=31.34 Aligned_cols=71 Identities=13% Similarity=0.047 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCCCCeEEeecCCC-CCCCcceEEEEEcCCCC-C-CCCCCEEEEEEEeCCCCCCCCCeeeec
Q 031420 8 RGRLTEERKAWRKNHPHGFVAKPETKD-GSVNLMIWECIIPGKTG-T-DWEGGYFPLTLYFSEDYPSKPPKCKFP 79 (160)
Q Consensus 8 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~-~~~~~~~w~~~i~Gp~~-t-py~gg~f~~~i~fp~~YP~~pP~v~f~ 79 (160)
..+...|+..|..--+..+........ .........+.+. +.+ . .-..-.+.+.|.||++||..+|.|.+.
T Consensus 12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred HHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEe
Confidence 456778888887765555543211000 0001345566665 221 1 011246889999999999999999874
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=91.64 E-value=0.5 Score=32.62 Aligned_cols=24 Identities=21% Similarity=0.348 Sum_probs=20.8
Q ss_pred EEEEEEEeCCCCCCCCCeeeeccC
Q 031420 58 YFPLTLYFSEDYPSKPPKCKFPQG 81 (160)
Q Consensus 58 ~f~~~i~fp~~YP~~pP~v~f~t~ 81 (160)
.+.+.|.+|.+||..||.+.....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 688999999999999999987543
No 64
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=82.77 E-value=1.1 Score=20.75 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCe
Q 031420 6 IARGRLTEERKAWRKNHPHGF 26 (160)
Q Consensus 6 ~~~~Rl~~E~~~l~~~~~~~~ 26 (160)
..+.||.-|+..++.+|+.|.
T Consensus 5 seldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 5 SELDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHHHHhhhccCCCCCC
Confidence 357899999999999999874
No 65
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=82.28 E-value=0.26 Score=32.43 Aligned_cols=36 Identities=3% Similarity=-0.080 Sum_probs=0.0
Q ss_pred CCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 123 ~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
-.....|.+...|++|.++++.|...||.|+.-||+
T Consensus 20 ~~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a~ 55 (108)
T 2cwb_A 20 GETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDAT 55 (108)
T ss_dssp ------------------------------------
T ss_pred CcccCCchhHHHHHHHHhchhccccccccccccCcC
Confidence 344567899999999999999999999999966653
No 66
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=39.96 E-value=79 Score=22.29 Aligned_cols=44 Identities=14% Similarity=0.285 Sum_probs=31.5
Q ss_pred CCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccC
Q 031420 36 SVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG 81 (160)
Q Consensus 36 ~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (160)
++....|.|-+.|+.+.--..-+=++.+.+.+.||. |...+..+
T Consensus 29 ~~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~P 72 (175)
T 3rls_A 29 AEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAP 72 (175)
T ss_dssp TTCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSS
T ss_pred CCCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCC
Confidence 367789999999877654444466788899999975 65555544
No 67
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=38.58 E-value=34 Score=18.51 Aligned_cols=43 Identities=19% Similarity=0.370 Sum_probs=30.9
Q ss_pred HHHHHHhhcCCCCCCc-cCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031420 114 LVGIQDLLDQPNPADP-AQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158 (160)
Q Consensus 114 l~~i~~ll~~p~~~~p-~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 158 (160)
|..|..-+.+|+ +| -+..+-..++.|+......+|.-+.+|++
T Consensus 3 LqqLl~tlksp~--sp~qqqqvl~ILksnPqLMAAfIkQR~~~y~~ 46 (47)
T 1zoq_C 3 LQDLLRTLKSPS--SPQQQQQVLNILKSNPQLMAAFIKQRTAKYVA 46 (47)
T ss_dssp HHHHHHTCCSCC--CHHHHHHHHHHHHTCHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHhcCCC--CHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcc
Confidence 344444555565 33 35577778899999999999988888875
No 68
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=36.47 E-value=17 Score=16.76 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=10.4
Q ss_pred CCCCCeeeeccCccccc
Q 031420 70 PSKPPKCKFPQGFFHPN 86 (160)
Q Consensus 70 P~~pP~v~f~t~i~Hpn 86 (160)
|...|.-.|..+.|||-
T Consensus 4 pmtlpenyfserpyhpp 20 (26)
T 2jrw_A 4 PMTLPENYFSERPYHPP 20 (26)
T ss_dssp CCCCSSSSCCSSSCCSC
T ss_pred ccccchhhcccCCCCCC
Confidence 34444555777778874
No 69
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=31.22 E-value=9.8 Score=23.71 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q 031420 6 IARGRLTEERKAW 18 (160)
Q Consensus 6 ~~~~Rl~~E~~~l 18 (160)
..+|||++||+-|
T Consensus 62 sQLKRvQRdlrGL 74 (87)
T 2rf4_B 62 SQLKRIQRDFKGL 74 (87)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhcCC
Confidence 3679999998855
No 70
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=23.50 E-value=67 Score=23.23 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=21.1
Q ss_pred CCCEEEEEEEeCCCCCC-----CCCeeeec
Q 031420 55 EGGYFPLTLYFSEDYPS-----KPPKCKFP 79 (160)
Q Consensus 55 ~gg~f~~~i~fp~~YP~-----~pP~v~f~ 79 (160)
+.|.|.|+-.+|--||. .||.|.|.
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~ 138 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLI 138 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEE
Confidence 35889999999999998 78888774
No 71
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=22.87 E-value=87 Score=17.98 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=17.6
Q ss_pred cCHHHHHHHhhCHHHHHHHH
Q 031420 130 AQTDGYQLFIQDPAEYKRRV 149 (160)
Q Consensus 130 ~n~~a~~~~~~~~~~f~~~~ 149 (160)
-|++.+.+..+|.++|.+..
T Consensus 37 ~nP~l~~~I~~n~e~Fl~ll 56 (61)
T 2f4m_B 37 ENPQLLQQISQHQEHFIQML 56 (61)
T ss_dssp HCHHHHHHHHHSHHHHHHHH
T ss_pred HCHHHHHHHHHCHHHHHHHH
Confidence 58999999999999998865
No 72
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=22.39 E-value=84 Score=18.73 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=18.6
Q ss_pred cCHHHHHHHhhCHHHHHHHHH
Q 031420 130 AQTDGYQLFIQDPAEYKRRVR 150 (160)
Q Consensus 130 ~n~~a~~~~~~~~~~f~~~~r 150 (160)
-|++.+.+..+|+++|.+...
T Consensus 39 ~NPqL~q~I~~n~e~Fl~ll~ 59 (72)
T 1pve_A 39 ENPQLLQQISQHQEHFIQMLN 59 (72)
T ss_dssp TCHHHHHHHHTTHHHHHHHHH
T ss_pred HCHHHHHHHHHCHHHHHHHHc
Confidence 589999999999999998764
No 73
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=22.34 E-value=1.9e+02 Score=19.57 Aligned_cols=44 Identities=11% Similarity=0.281 Sum_probs=31.6
Q ss_pred CcceEE--EEEcCCCCCCCC-CCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 031420 38 NLMIWE--CIIPGKTGTDWE-GGYFPLTLYFSEDYPSKPPKCKFPQGFF 83 (160)
Q Consensus 38 ~~~~w~--~~i~Gp~~tpy~-gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 83 (160)
-...|. +-+.|+.+.... .-+=++.+.+-+.|+ .|...+..+.|
T Consensus 31 ~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~--np~r~v~~pPF 77 (140)
T 3qrl_A 31 PVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFA--NPNRTFTDPPF 77 (140)
T ss_dssp CCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSS--SCEEEECSTTC
T ss_pred cccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCC--CCeEEEcCCCc
Confidence 336898 888998887664 345567888888887 48777766544
No 74
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=21.05 E-value=94 Score=20.27 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCCCCCCEEEEEEEeCC
Q 031420 42 WECIIPGKTGTDWEGGYFPLTLYFSE 67 (160)
Q Consensus 42 w~~~i~Gp~~tpy~gg~f~~~i~fp~ 67 (160)
+|+.++|.+..+=+|..+.+++.|-+
T Consensus 82 ~HvML~gl~~~l~~G~~v~ltL~Fe~ 107 (120)
T 2k6w_A 82 YHFMLLGLKRPLKAGEEVELDLLFAG 107 (120)
T ss_dssp EEEEEEEESSCBCTTCEEEEEEEETT
T ss_pred eEEEEeCCCCCCCCCCEEEEEEEECC
Confidence 68999998888889999999999964
No 75
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=20.87 E-value=69 Score=16.69 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q 031420 6 IARGRLTEERKAWR 19 (160)
Q Consensus 6 ~~~~Rl~~E~~~l~ 19 (160)
...+||..|++.+.
T Consensus 28 ~~~~~~~~~~~~~~ 41 (42)
T 3g9r_A 28 SKIKRIENEIKRIK 41 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 35799999999875
No 76
>3pft_A Flavin reductase; desulfurization, oxidoreductase; HET: FMN; 1.60A {Mycobacterium goodii} SCOP: b.45.1.0
Probab=20.42 E-value=43 Score=22.71 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=24.9
Q ss_pred CCCCeeeec---cCcccccccCCCceeecCCCC
Q 031420 71 SKPPKCKFP---QGFFHPNVYPSGTVCLSILNE 100 (160)
Q Consensus 71 ~~pP~v~f~---t~i~Hpnv~~~G~icl~~l~~ 100 (160)
..||.|.|. +.--|++|..+|..|+++|..
T Consensus 42 ~~PP~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~ 74 (157)
T 3pft_A 42 LEPPLVAFAVQNSSTTWPKLKDLPSLGISVLGE 74 (157)
T ss_dssp TTTTEEEEEEETTCSSHHHHTTSSCEEEEECBT
T ss_pred CCCcEEEEEECCCCchHHHHHhCCEEEEEECCH
Confidence 368888884 356789999999999999987
Done!