Query 031421
Match_columns 160
No_of_seqs 163 out of 1143
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 22:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 100.0 9.9E-40 3.4E-44 241.1 14.3 137 8-145 46-183 (185)
2 3by4_A OTU1, ubiquitin thioest 100.0 4.5E-35 1.5E-39 221.0 13.2 123 16-143 16-139 (212)
3 3phx_A RNA-directed RNA polyme 100.0 1.9E-33 6.5E-38 207.9 13.1 127 20-150 31-166 (185)
4 3phu_A RNA-directed RNA polyme 100.0 7.4E-33 2.5E-37 209.0 13.5 127 20-150 31-166 (219)
5 1tff_A Ubiquitin thiolesterase 99.9 2.8E-24 9.5E-29 164.2 12.0 96 48-146 133-233 (234)
6 2zfy_A Ubiquitin thioesterase 99.9 1.8E-22 6.2E-27 154.3 12.1 93 48-143 136-234 (234)
7 4dhi_B Ubiquitin thioesterase 99.9 7.4E-22 2.5E-26 153.4 13.0 100 47-148 170-278 (284)
8 4ddg_A Ubiquitin-conjugating e 99.8 2.6E-20 8.9E-25 152.2 10.3 94 47-143 300-399 (399)
9 3dkb_A Tumor necrosis factor, 99.3 4.2E-11 1.4E-15 94.9 13.1 128 20-148 112-287 (390)
10 3zrh_A Ubiquitin thioesterase 99.1 1.7E-10 5.7E-15 92.9 9.5 128 20-148 189-353 (454)
11 4a5u_A RNA replicase polyprote 92.3 1.2 4E-05 31.3 8.5 98 24-144 58-157 (160)
12 4aq3_A Apoptosis regulator BCL 57.1 20 0.00069 25.2 5.1 97 1-99 12-119 (169)
13 2w3l_A BCL2-XL, apoptosis regu 49.7 31 0.0011 23.3 4.9 83 2-99 2-95 (144)
14 3sp7_A BCL-2-like protein 1; a 47.8 22 0.00075 25.1 4.0 96 2-99 7-113 (172)
15 3b21_A ORF169B, OSPI; bacteria 32.2 1.1E+02 0.0039 21.0 5.4 21 95-115 135-155 (220)
16 2vof_A BCL-2-related protein A 30.6 35 0.0012 23.5 2.7 53 47-99 39-104 (157)
17 3mp2_A Non-structural protein 29.2 1E+02 0.0035 22.5 5.1 19 26-44 18-36 (211)
18 2nl9_A Fusion protein consisti 29.2 33 0.0011 23.6 2.4 54 46-99 39-104 (157)
19 3ox7_P MH027; urokinase-type p 28.5 10 0.00034 17.1 -0.3 11 27-37 4-14 (23)
20 1o0l_A Apoptosis regulator BCL 27.5 95 0.0033 21.9 4.7 54 46-99 47-111 (188)
21 3fz2_A Minor tail protein U; m 27.0 36 0.0012 23.1 2.1 20 43-62 2-21 (134)
22 3bqa_A Sensor protein PHOQ; hi 25.4 19 0.00064 24.7 0.5 34 124-159 39-72 (148)
23 4hw4_A Induced myeloid leukemi 25.0 47 0.0016 22.9 2.5 54 46-99 39-104 (157)
24 2v27_A Phenylalanine hydroxyla 21.9 26 0.00089 26.8 0.8 81 8-99 64-162 (275)
25 2fe8_A PP1AB, ORF1AB, replicas 21.4 1.3E+02 0.0045 23.3 4.7 43 26-68 107-151 (315)
26 1v54_G Cytochrome C oxidase po 21.2 15 0.00052 22.9 -0.6 8 27-34 63-71 (85)
27 1ohu_A Apoptosis regulator CED 20.9 1.1E+02 0.0039 21.3 4.0 20 3-22 13-32 (175)
28 3ghf_A Septum site-determining 20.4 1.3E+02 0.0046 19.5 4.0 37 6-42 61-97 (120)
29 3ilc_A BCL-2-like protein 1; a 20.4 95 0.0032 22.4 3.4 55 45-99 86-151 (197)
30 2y69_G Cytochrome C oxidase po 20.1 17 0.00057 23.3 -0.6 8 27-34 75-83 (97)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=100.00 E-value=9.9e-40 Score=241.13 Aligned_cols=137 Identities=23% Similarity=0.414 Sum_probs=103.1
Q ss_pred HHHHHHHH-hhCCcEEeeeCCCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhccccccccccchHHHHHHhhcCCcee
Q 031421 8 HQRLLQRL-NVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEW 86 (160)
Q Consensus 8 ~~~l~~~l-~~~gl~~~~v~gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~~f~~~i~~~~~~yl~~m~~~g~w 86 (160)
+..|.++| +++||.++.|||||||||||||+||+++++.|..||+.+++||++|++.|.+|+++++++||++|+++++|
T Consensus 46 e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~~~~~W 125 (185)
T 3pfy_A 46 EHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCH 125 (185)
T ss_dssp HHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-----------------
T ss_pred HHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhCCCcc
Confidence 34455555 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhCCeEEEEecCCCceeEEecCCCCCCCCeEEEEeCCCCcceeeecCC
Q 031421 87 GDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIR 145 (160)
Q Consensus 87 g~~~ei~A~a~~~~v~I~V~~~~~~~~~~~~~p~~~~~~~~I~L~~~~~~HY~~l~~~~ 145 (160)
||++||+|+|++|+++|.|++.+. .+...+.+......++|.|+|.+++||++|+..+
T Consensus 126 Gg~iEL~AlS~~~~v~I~V~~~~~-~~i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p~ 183 (185)
T 3pfy_A 126 GNHIEMQAMAEMYNRPVEVYQYST-EPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPN 183 (185)
T ss_dssp CCHHHHHHHHHHHTSCEEEESSCS-SCSEEECTTSCCTTSCEEEEEETTTEEEEEECC-
T ss_pred chHHHHHHHHHhhCCcEEEEECCC-CCeEEecCccCCCCCEEEEEECCCCCcccccCCC
Confidence 999999999999999999999754 2333343333345789999998899999998654
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=100.00 E-value=4.5e-35 Score=221.03 Aligned_cols=123 Identities=18% Similarity=0.258 Sum_probs=110.2
Q ss_pred hhCCcEEeeeCCCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhcccccc-ccccchHHHHHHhhcCCceeCcHHHHHH
Q 031421 16 NVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYE-GYVPMKYKRYYKNMAKVGEWGDHVTLQA 94 (160)
Q Consensus 16 ~~~gl~~~~v~gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~~f~-~~i~~~~~~yl~~m~~~g~wg~~~ei~A 94 (160)
...||.++.|||||||||||||+|| ++++.|..||+.+++||++|++.|. .+++.++++||++|+++++|||++||+|
T Consensus 16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~A 94 (212)
T 3by4_A 16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGI 94 (212)
T ss_dssp CCSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHH
Confidence 3457899999999999999999999 8899999999999999999999997 5667899999999999999999999999
Q ss_pred HHHHhCCeEEEEecCCCceeEEecCCCCCCCCeEEEEeCCCCcceeeec
Q 031421 95 AADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYD 143 (160)
Q Consensus 95 ~a~~~~v~I~V~~~~~~~~~~~~~p~~~~~~~~I~L~~~~~~HY~~l~~ 143 (160)
+|++|+++|.|++.+. .....|.+.. ..++|+|+|. ++|||+|+.
T Consensus 95 ls~~~~~~I~V~~~~~-~~~~~~~~~~--~~~~I~L~Y~-g~HYdsl~~ 139 (212)
T 3by4_A 95 ISDALAVAIYVVDIDA-VKIEKFNEDK--FDNYILILFN-GIHYDSLTM 139 (212)
T ss_dssp HHHHHTCEEEEEETTT-TEEEEESTTT--CSEEEEEEEC-SSCEEEEEE
T ss_pred HHHHHCCCEEEEECCC-CCeEEeCCCC--CCCeEEEEEc-CCcceEEec
Confidence 9999999999999764 3556676543 4679999995 899999998
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=100.00 E-value=1.9e-33 Score=207.93 Aligned_cols=127 Identities=17% Similarity=0.257 Sum_probs=107.0
Q ss_pred cEEeeeCCCCchHHHHHHHHHhcC-cch-----HHHHHHHHHHHHhhccccccccccchHHHHHHhhcCCceeCcHHHHH
Q 031421 20 LYEVKVSGDGNCQFRALSDQMYKS-PEY-----HKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQ 93 (160)
Q Consensus 20 l~~~~v~gDGnClF~ais~~l~~~-~~~-----~~~lR~~~v~~i~~n~~~f~~~i~~~~~~yl~~m~~~g~wg~~~ei~ 93 (160)
+.+.+|||||||||||||+||+++ +.. |.+||+.+++||++|++. .+++.++++||++|+++++|||++||+
T Consensus 31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg~iEL~ 108 (185)
T 3phx_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS 108 (185)
T ss_dssp EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCBHHHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCcHHHHH
Confidence 778889999999999999999998 555 899999999999999998 356789999999999999999999999
Q ss_pred HHHHHhCCeEEEEecCCCc---eeEEecCCCCCCCCeEEEEeCCCCcceeeecCCCCCCC
Q 031421 94 AAADKFAAKICLLTSFRDT---CFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVP 150 (160)
Q Consensus 94 A~a~~~~v~I~V~~~~~~~---~~~~~~p~~~~~~~~I~L~~~~~~HY~~l~~~~~~~~~ 150 (160)
|+|++|+++|.|++.+... ..+.|.++. ..++|+|+|.+++|||+|++..+-+.+
T Consensus 109 Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~--~~~~I~L~Y~g~~HYdsl~~~~~~~~~ 166 (185)
T 3phx_A 109 MLAKEMGITIIIWTVAASDEVEAGIKFGDGD--VFTAVNLLHSGQTHFDALRILPQFETD 166 (185)
T ss_dssp HHHHHHCCCEEEEEC--CCBCCEEEEESSCC--TTTSEEEEEETTTEEEEEEECGGGC--
T ss_pred HHHHHHCCcEEEEEecCCCCceEEEEcCCCC--CCCEEEEEECCCcCchhceECCCCCCC
Confidence 9999999999999865433 245666543 268999999766999999998765443
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=100.00 E-value=7.4e-33 Score=208.98 Aligned_cols=127 Identities=17% Similarity=0.255 Sum_probs=108.9
Q ss_pred cEEeeeCCCCchHHHHHHHHHhcC-cch-----HHHHHHHHHHHHhhccccccccccchHHHHHHhhcCCceeCcHHHHH
Q 031421 20 LYEVKVSGDGNCQFRALSDQMYKS-PEY-----HKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQ 93 (160)
Q Consensus 20 l~~~~v~gDGnClF~ais~~l~~~-~~~-----~~~lR~~~v~~i~~n~~~f~~~i~~~~~~yl~~m~~~g~wg~~~ei~ 93 (160)
+.+++|||||||||||||+||+++ +.. |..||+.+++||++|++.+ +++.++++||++|+++++|||++||+
T Consensus 31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~~--~~~~~feeY~~~m~~~g~WGG~iEL~ 108 (219)
T 3phu_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEAR--LVGLSLEDYLKRMLSDNEWGSTLEAS 108 (219)
T ss_dssp EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHHH--HHCCCHHHHHHHHHSTTCCCCHHHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhhh--hcCCCHHHHHHHhcCCCccCCHHHHH
Confidence 778899999999999999999988 455 8999999999999999983 56789999999999999999999999
Q ss_pred HHHHHhCCeEEEEecCCCc---eeEEecCCCCCCCCeEEEEeCCCCcceeeecCCCCCCC
Q 031421 94 AAADKFAAKICLLTSFRDT---CFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVP 150 (160)
Q Consensus 94 A~a~~~~v~I~V~~~~~~~---~~~~~~p~~~~~~~~I~L~~~~~~HY~~l~~~~~~~~~ 150 (160)
|+|++|+++|+|++.+..+ ..+.|.+.. ..++|+|+|.+++||++|++..+-+.+
T Consensus 109 AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~--~~~~I~L~Y~g~~HYdSL~~~~d~~~~ 166 (219)
T 3phu_A 109 MLAKEMGITIIIWTVAASDEVEAGIKFGDGD--VFTAVNLLHSGQTHFDALRILPQFETD 166 (219)
T ss_dssp HHHHHTTCCEEEEEESSSSBEEEEEEESSCC--TTTSEEEEEETTTEEEEEEECTTTCCS
T ss_pred HHHHHhCCCEEEEEecCCCCceeEEEecCCC--CCCeEEEEECCCcCchhheECCCCCCC
Confidence 9999999999999866531 345666543 268999999766999999998875443
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.91 E-value=2.8e-24 Score=164.23 Aligned_cols=96 Identities=13% Similarity=0.292 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhccccccccccc--hHHHHHH-hhcCCceeCcHHHHHHHHHHhCCeEEEEecCCCceeEE--ecCCCC
Q 031421 48 KHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIE--IMPQHQ 122 (160)
Q Consensus 48 ~~lR~~~v~~i~~n~~~f~~~i~~--~~~~yl~-~m~~~g~wg~~~ei~A~a~~~~v~I~V~~~~~~~~~~~--~~p~~~ 122 (160)
..+|..+..||++|++.|.+|+++ ++++||+ .+...++|||+++|+|+|+.++++|.|+..++....+. ..|++
T Consensus 133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~~- 211 (234)
T 1tff_A 133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEA- 211 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCC-
T ss_pred HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCCC-
Confidence 458999999999999999999975 8999999 78999999999999999999999999999765331111 12332
Q ss_pred CCCCeEEEEeCCCCcceeeecCCC
Q 031421 123 APKRELWLSFWSEVHYNSLYDIRD 146 (160)
Q Consensus 123 ~~~~~I~L~~~~~~HY~~l~~~~~ 146 (160)
..+.|+|+| .++|||+|++...
T Consensus 212 -~~~~I~LlY-~pgHYdily~~~~ 233 (234)
T 1tff_A 212 -ATPSVYLLY-KTSHYNILYAADK 233 (234)
T ss_dssp -SSCSEEEEE-ETTEEEEEEECCC
T ss_pred -CCCeEEEEE-CCCCceecccCCC
Confidence 367899999 5789999998753
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.88 E-value=1.8e-22 Score=154.26 Aligned_cols=93 Identities=18% Similarity=0.292 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhhccccccccccc--hHHHHHH-hhcCCceeCcHHHHHHHHHHhCCeEEEEecCCCc---eeEEecCCC
Q 031421 48 KHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDT---CFIEIMPQH 121 (160)
Q Consensus 48 ~~lR~~~v~~i~~n~~~f~~~i~~--~~~~yl~-~m~~~g~wg~~~ei~A~a~~~~v~I~V~~~~~~~---~~~~~~p~~ 121 (160)
..+|..+..||++|++.|.+|+++ ++++||+ .+...++|||+++|.|+|++|+++|.|+..++.. ......|++
T Consensus 136 ~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~ 215 (234)
T 2zfy_A 136 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEG 215 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEESTT
T ss_pred HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCCC
Confidence 367888899999999999999975 8999997 6899999999999999999999999999866532 111223433
Q ss_pred CCCCCeEEEEeCCCCcceeeec
Q 031421 122 QAPKRELWLSFWSEVHYNSLYD 143 (160)
Q Consensus 122 ~~~~~~I~L~~~~~~HY~~l~~ 143 (160)
..+.|+|+| .++|||+|+|
T Consensus 216 --~~p~I~LlY-~pgHYdiLy~ 234 (234)
T 2zfy_A 216 --SEPKVYLLY-RPGHYDILYK 234 (234)
T ss_dssp --CCCSEEEEE-ETTEEEEEEC
T ss_pred --CCCeEEEEE-CCCCcccCCC
Confidence 257899999 5789999985
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.87 E-value=7.4e-22 Score=153.42 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhhccccccccccc--hHHHHHH-hhcCCceeCcHHHHHHHHHHhCCeEEEEecCCC--c--eeEE-ec
Q 031421 47 HKHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD--T--CFIE-IM 118 (160)
Q Consensus 47 ~~~lR~~~v~~i~~n~~~f~~~i~~--~~~~yl~-~m~~~g~wg~~~ei~A~a~~~~v~I~V~~~~~~--~--~~~~-~~ 118 (160)
...||..+..||++|++.|.+|+.+ ++++||+ .+...+.|||+++|.|+|++|+++|.|+..++. . .... |
T Consensus 170 v~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f- 248 (284)
T 4dhi_B 170 LMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI- 248 (284)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE-
T ss_pred HHHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC-
Confidence 3467889999999999999999965 7999999 799999999999999999999999999876532 1 1233 5
Q ss_pred CCCCC-CCCeEEEEeCCCCcceeeecCCCCC
Q 031421 119 PQHQA-PKRELWLSFWSEVHYNSLYDIRDAP 148 (160)
Q Consensus 119 p~~~~-~~~~I~L~~~~~~HY~~l~~~~~~~ 148 (160)
|.+.. ..+.|+|+| .++|||.|++....+
T Consensus 249 p~~~~~~~p~I~LLY-rpgHYDILY~~~p~~ 278 (284)
T 4dhi_B 249 PSDDQQIAPEITLLY-RPGHYDVIYKKDSTE 278 (284)
T ss_dssp SCCCSCCCCSEEEEE-ETTEEEEEEECC---
T ss_pred CCCCCCCCCEEEEee-cCCCccccccCCCCc
Confidence 75532 347899999 789999999987554
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.82 E-value=2.6e-20 Score=152.22 Aligned_cols=94 Identities=18% Similarity=0.280 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhhccccccccccc--hHHHHHH-hhcCCceeCcHHHHHHHHHHhCCeEEEEecCCC-c-ee-EEecCC
Q 031421 47 HKHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD-T-CF-IEIMPQ 120 (160)
Q Consensus 47 ~~~lR~~~v~~i~~n~~~f~~~i~~--~~~~yl~-~m~~~g~wg~~~ei~A~a~~~~v~I~V~~~~~~-~-~~-~~~~p~ 120 (160)
...+|..+..||++|++.|.+|+++ ++++||+ .+...+.|||+++|.|+|+.|+++|.|+..++. . .. ....|.
T Consensus 300 v~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~ 379 (399)
T 4ddg_A 300 VVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE 379 (399)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTT
T ss_pred HHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCC
Confidence 3458888999999999999999975 7999999 899999999999999999999999999875442 1 11 122354
Q ss_pred CCCCCCeEEEEeCCCCcceeeec
Q 031421 121 HQAPKRELWLSFWSEVHYNSLYD 143 (160)
Q Consensus 121 ~~~~~~~I~L~~~~~~HY~~l~~ 143 (160)
+. .+.|+|+| .++|||+|++
T Consensus 380 ~~--~~~I~LLY-rPgHYDiLY~ 399 (399)
T 4ddg_A 380 GS--EPKVYLLY-RPGHYDILYK 399 (399)
T ss_dssp TC--CCCCEEEE-ETBEEEEEEC
T ss_pred CC--CCEEEEEE-cCCccccCCC
Confidence 33 67899999 7899999985
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=99.30 E-value=4.2e-11 Score=94.88 Aligned_cols=128 Identities=19% Similarity=0.358 Sum_probs=88.1
Q ss_pred cEEeeeCCCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhccc-cc-----------cccc-----------cchHHHH
Q 031421 20 LYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRS-MY-----------EGYV-----------PMKYKRY 76 (160)
Q Consensus 20 l~~~~v~gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~-~f-----------~~~i-----------~~~~~~y 76 (160)
|....+.||||||.||+|.+++|-.+....+|+.+.+-|..+.. .| ..|. ..+|+.-
T Consensus 112 L~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~I 191 (390)
T 3dkb_A 112 LVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNL 191 (390)
T ss_dssp EEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHHH
T ss_pred eEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHHH
Confidence 55677899999999999999999999889999998888876542 11 1222 1245554
Q ss_pred HHhhcCCc---------eeCcHHHHHHHHHHhCCeEEEEecC--C---Cc-ee--E----EecC----CCCCCCCeEEEE
Q 031421 77 YKNMAKVG---------EWGDHVTLQAAADKFAAKICLLTSF--R---DT-CF--I----EIMP----QHQAPKRELWLS 131 (160)
Q Consensus 77 l~~m~~~g---------~wg~~~ei~A~a~~~~v~I~V~~~~--~---~~-~~--~----~~~p----~~~~~~~~I~L~ 131 (160)
++..+.+. .=-.++.|.++|+++++||+|+... . ++ .+ + .|.| .......||.|+
T Consensus 192 v~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~Lg 271 (390)
T 3dkb_A 192 IKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLG 271 (390)
T ss_dssp HHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEE
T ss_pred HHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEE
Confidence 44333221 1235788999999999999999633 1 11 11 1 2223 333557899999
Q ss_pred eCCCCcceeeecCCCCC
Q 031421 132 FWSEVHYNSLYDIRDAP 148 (160)
Q Consensus 132 ~~~~~HY~~l~~~~~~~ 148 (160)
| ..+||.+|....+.+
T Consensus 272 Y-~s~HFsaLV~me~~~ 287 (390)
T 3dkb_A 272 Y-DSHHFVPLVTLKDSG 287 (390)
T ss_dssp E-CSSCEEEEEEBCSSS
T ss_pred e-ccCceeeeeecccCC
Confidence 9 679999999987543
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=99.15 E-value=1.7e-10 Score=92.89 Aligned_cols=128 Identities=13% Similarity=0.223 Sum_probs=91.8
Q ss_pred cEEeeeCCCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhccccc-c---------------ccc--c----chHHHHH
Q 031421 20 LYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMY-E---------------GYV--P----MKYKRYY 77 (160)
Q Consensus 20 l~~~~v~gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~~f-~---------------~~i--~----~~~~~yl 77 (160)
|......||||||.||+|.++.|-++....||+.+.+-|.+....| . .|. + .+|+.-+
T Consensus 189 L~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~iv 268 (454)
T 3zrh_A 189 LYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFIL 268 (454)
T ss_dssp EEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHH
T ss_pred eeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHH
Confidence 4566788999999999999999999999999999888887643221 1 121 1 2344445
Q ss_pred HhhcCCceeCcHHHHHHHHHHhCCeEEEEecCCC----c-e--eE----EecCC----CCCCCCeEEEEeCCCCcceeee
Q 031421 78 KNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD----T-C--FI----EIMPQ----HQAPKRELWLSFWSEVHYNSLY 142 (160)
Q Consensus 78 ~~m~~~g~wg~~~ei~A~a~~~~v~I~V~~~~~~----~-~--~~----~~~p~----~~~~~~~I~L~~~~~~HY~~l~ 142 (160)
+..+.+|.--+++.|.++|+++++||+|+...-- + . .+ .|.|- ......||.|+| ..+||.+|.
T Consensus 269 ~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY-~~gHFsaLV 347 (454)
T 3zrh_A 269 SLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGY-TRGHFSALV 347 (454)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEE-ETTEEEEEE
T ss_pred HHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEe-cccceeeee
Confidence 5456677767889999999999999999985321 1 0 01 23332 224468999999 578999999
Q ss_pred cCCCCC
Q 031421 143 DIRDAP 148 (160)
Q Consensus 143 ~~~~~~ 148 (160)
+..+.+
T Consensus 348 ~~~~~~ 353 (454)
T 3zrh_A 348 AMENDG 353 (454)
T ss_dssp EBCCC-
T ss_pred eccccc
Confidence 987654
No 11
>4a5u_A RNA replicase polyprotein; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Turnip yellow mosaic virus}
Probab=92.33 E-value=1.2 Score=31.35 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=62.5
Q ss_pred eeCCCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhccccccccccchHHHHHHhhcCCceeCcHHHHHHHHHHhCCeE
Q 031421 24 KVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKI 103 (160)
Q Consensus 24 ~v~gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~~f~~~i~~~~~~yl~~m~~~g~wg~~~ei~A~a~~~~v~I 103 (160)
..| .-+||.-||+.++.-.. ..|-..+...+ ||. ++. .+.+++. | -+-..+.|+|-.|+...
T Consensus 58 P~P-~~~CLL~Ais~at~~s~---~~LW~~Lc~~l---PDS---lL~---n~ei~~~---G--LSTDhltaLa~~~~~~c 119 (160)
T 4a5u_A 58 PQP-TLNCLLSAVSDQTKVSE---EHLWESLQTIL---PDS---QLS---NEETNTL---G--LSTEHLTALAHLYNFQA 119 (160)
T ss_dssp CCC-SSCHHHHHHHHHHCCCH---HHHHHHHTTTS---CGG---GTS---SHHHHHH---C--CCHHHHHHHHHHHTEEE
T ss_pred CCc-chhhhHHHHhhccCCCH---HHHHHHHHHhC---chh---hcC---chhhhhc---C--CcHHHHHHHHHHHheEE
Confidence 344 48999999999988776 44544443321 221 111 0112222 1 24466889999999999
Q ss_pred EEEecCCCceeEEecCCCCCCCCeEEEEeCCC--CcceeeecC
Q 031421 104 CLLTSFRDTCFIEIMPQHQAPKRELWLSFWSE--VHYNSLYDI 144 (160)
Q Consensus 104 ~V~~~~~~~~~~~~~p~~~~~~~~I~L~~~~~--~HY~~l~~~ 144 (160)
.+.+..+ .+.++..+. ...+.|.|..| .||......
T Consensus 120 ~~hs~~~---~~~~Gi~~a--s~~~~I~ht~G~P~HFs~~~~l 157 (160)
T 4a5u_A 120 TVYSDRG---PILFGPSDT--IKRIDITHTTGPPSHFSPGKRL 157 (160)
T ss_dssp EEEETTE---EEEESCSSC--SEEEEEEEECSSSCEEEESCCC
T ss_pred EEEcCCc---eEEeecCCC--ceEEEEEeCCCCCCCccCCccc
Confidence 9999753 467776544 56788888544 899877554
No 12
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=57.10 E-value=20 Score=25.18 Aligned_cols=97 Identities=10% Similarity=0.080 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHHHhhCCcEEeeeCCCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhcccccccccc-------c--
Q 031421 1 MSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVP-------M-- 71 (160)
Q Consensus 1 ~~~~~~~~~~l~~~l~~~gl~~~~v~gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~~f~~~i~-------~-- 71 (160)
++++.+-.+=+.-+|.+.|+.-...+ ..=..+...-.-...+.-+..||...-+..++++..|..... .
T Consensus 12 ~~~r~lv~~yi~~kL~q~g~~~~~~~--~~~~~~~~~~~~~~~~~v~~~Lr~igdele~~~~~~f~~~~~~L~it~~~a~ 89 (169)
T 4aq3_A 12 YDNREIVMKYIHYKLSQRGYEWDAGD--DVEENRTEAPEGTESEVVHLALRQAGDDFSRRYRGDFAEMSSQLHLTPFTAR 89 (169)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCC---------------------CHHHHHHHHHHHHHHHTHHHHHHHHHHCCCCTTTHH
T ss_pred CChHHHHHHHHHHHHHHcCCCcCccc--ccccccCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCcHH
Confidence 36777888888999999998643211 110011111111234456778888888777778777766432 1
Q ss_pred -hHHHHHHhhcCC-ceeCcHHHHHHHHHHh
Q 031421 72 -KYKRYYKNMAKV-GEWGDHVTLQAAADKF 99 (160)
Q Consensus 72 -~~~~yl~~m~~~-g~wg~~~ei~A~a~~~ 99 (160)
.+.+-.+.+-.+ -.||-=+.+.++|-.+
T Consensus 90 ~~F~~Va~elF~dGiNWGRIVaLfaF~g~L 119 (169)
T 4aq3_A 90 GRFATVVEELFRDGVNWGRIVAFFEFGGVM 119 (169)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 222333344333 4899888888776444
No 13
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=49.68 E-value=31 Score=23.32 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHhhCCcEEeeeCCCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhcccccccccc------c----
Q 031421 2 SDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVP------M---- 71 (160)
Q Consensus 2 ~~~~~~~~~l~~~l~~~gl~~~~v~gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~~f~~~i~------~---- 71 (160)
+++.+..+=|.-+|+..|+.....+ .....+..||+..-+..++++..|..+.. +
T Consensus 2 ~~~~L~~dyi~~~l~~~g~~~~~~~---------------~p~~~~~~Lr~~gdele~~~~~~f~~~~~~l~i~~~~~~~ 66 (144)
T 2w3l_A 2 DNREIVMKYIHYKLSQRGYEWDAGA---------------DSEVVHKTLREAGDDFSRRYRRDFAEMSSGLHLTPFTARG 66 (144)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCC------------------CHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCCCTTTHHH
T ss_pred cHHHHHHHHHHHHhCCCCCCCcCCC---------------cccHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCccHHH
Confidence 4566777778888888887433222 11123456666666666666666544321 1
Q ss_pred hHHHHHHhhcC-CceeCcHHHHHHHHHHh
Q 031421 72 KYKRYYKNMAK-VGEWGDHVTLQAAADKF 99 (160)
Q Consensus 72 ~~~~yl~~m~~-~g~wg~~~ei~A~a~~~ 99 (160)
.+..-.+.+-. .=+||--+.+.++|-.+
T Consensus 67 ~f~~Va~elF~dGinWGRIValf~F~g~l 95 (144)
T 2w3l_A 67 RFATVVEELFRDGVNWGRIVAFFEFGGVM 95 (144)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 22222233333 34899988888777654
No 14
>3sp7_A BCL-2-like protein 1; apoptosis regulator-inhibitor complex; HET: 03B; 1.40A {Homo sapiens} PDB: 2lp8_A* 2lpc_A 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 4ehr_A* 3spf_A* 2pon_B 3r85_A 2p1l_A 4a1u_A* 2yj1_A 2yq7_A 2yq6_A 3fdm_A ...
Probab=47.85 E-value=22 Score=25.09 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=53.4
Q ss_pred ChHHHHHHHHHHHHhhCCcEEeeeCCCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhcccccccccc-------c---
Q 031421 2 SDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVP-------M--- 71 (160)
Q Consensus 2 ~~~~~~~~~l~~~l~~~gl~~~~v~gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~~f~~~i~-------~--- 71 (160)
|++.+-.+=+.-+|...|+.......... .++....-.+...-+..||...-+..++++..|..+.. .
T Consensus 7 ~~r~lv~dyI~yrL~~~g~~~~~~~~~~~--~~~~~~~~~~~~~v~~~Lr~~gdelE~~~~~~f~~~~~qL~it~~~a~~ 84 (172)
T 3sp7_A 7 SNRELVVDFLSYKLSQKGYSWSQFSDVEE--NRTEAPEGTESEAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQ 84 (172)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGTCC--------------CHHHHHHHHHHHHHHHHHHHGGGCSCHHHHTTCCTTCCHH
T ss_pred hhhHHHHHHHHHHHhhCCCCCcccccccc--ccCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcchHHH
Confidence 46677777788888888875332211100 11111111122234577888888888888888877543 1
Q ss_pred hHHHHHHhhcCC-ceeCcHHHHHHHHHHh
Q 031421 72 KYKRYYKNMAKV-GEWGDHVTLQAAADKF 99 (160)
Q Consensus 72 ~~~~yl~~m~~~-g~wg~~~ei~A~a~~~ 99 (160)
.+..-.+.+-.+ -.||-=+.+.+++-.+
T Consensus 85 ~F~~Va~elF~dGinWGRIVaLfaF~g~l 113 (172)
T 3sp7_A 85 SFEQVVNELFRDGVNWGRIVAFFSFGGAL 113 (172)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 233333344333 4899888888777544
No 15
>3b21_A ORF169B, OSPI; bacterial protein, effector, type 3 secretion SYST unknown function; 2.01A {Shigella flexneri}
Probab=32.17 E-value=1.1e+02 Score=20.95 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=11.4
Q ss_pred HHHHhCCeEEEEecCCCceeE
Q 031421 95 AADKFAAKICLLTSFRDTCFI 115 (160)
Q Consensus 95 ~a~~~~v~I~V~~~~~~~~~~ 115 (160)
+-+.-+-.++.++..+.+.++
T Consensus 135 lqntskgsvvmisieqathwi 155 (220)
T 3b21_A 135 LQNTSKGSVVMISIEQATHWI 155 (220)
T ss_dssp HHHSCTTCEEEEEETTTTEEE
T ss_pred HhccCCCcEEEEEhhhhhhhh
Confidence 444455566667665544433
No 16
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=30.55 E-value=35 Score=23.47 Aligned_cols=53 Identities=15% Similarity=0.287 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhcccccccccc-------c----hHHHHHHhhcCCc--eeCcHHHHHHHHHHh
Q 031421 47 HKHVRKEVVKQLKDCRSMYEGYVP-------M----KYKRYYKNMAKVG--EWGDHVTLQAAADKF 99 (160)
Q Consensus 47 ~~~lR~~~v~~i~~n~~~f~~~i~-------~----~~~~yl~~m~~~g--~wg~~~ei~A~a~~~ 99 (160)
...||....+..+++++.|..++. + .+..-.+.+-.+| +||--+.+.++|-.+
T Consensus 39 ~~~Lr~~~~ele~~~~~~f~~~~~~l~i~~~~~a~~~f~~Va~elF~dg~inWGRIVal~~F~g~l 104 (157)
T 2vof_A 39 CRVLQRVAFSVQKEVEKNLKSYLDDFHVESIDTARIIFNQVMEKEFEDGIINWGRIVTIFAFGGVL 104 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHTTCCCCSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 455666665555566655554332 1 1333334566677 899988888777554
No 17
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=29.25 E-value=1e+02 Score=22.49 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=15.9
Q ss_pred CCCCchHHHHHHHHHhcCc
Q 031421 26 SGDGNCQFRALSDQMYKSP 44 (160)
Q Consensus 26 ~gDGnClF~ais~~l~~~~ 44 (160)
-.|+||.-.|.-.+|....
T Consensus 18 q~dNNCwVNaa~l~LQ~~~ 36 (211)
T 3mp2_A 18 QGDNNCWINACCYQLQAFD 36 (211)
T ss_dssp CCTTCHHHHHHHHHHTTCT
T ss_pred ccCCCcHHHHHHHHHHhcC
Confidence 3799999999999987654
No 18
>2nl9_A Fusion protein consisting of induced myeloid LEUK differentiation protein MCL-1 homolog...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 1wsx_A 2jm6_B 2roc_A 2rod_A 2kbw_A 3mk8_B
Probab=29.22 E-value=33 Score=23.56 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHhhcccccccccc-------c---hHHHHHHhhcCCc--eeCcHHHHHHHHHHh
Q 031421 46 YHKHVRKEVVKQLKDCRSMYEGYVP-------M---KYKRYYKNMAKVG--EWGDHVTLQAAADKF 99 (160)
Q Consensus 46 ~~~~lR~~~v~~i~~n~~~f~~~i~-------~---~~~~yl~~m~~~g--~wg~~~ei~A~a~~~ 99 (160)
.+..||+..-+..++++..|..+.. . .+..-.+.+-.+| .||-=+.+.++|-.+
T Consensus 39 ~~~~Lr~i~dele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elF~dGi~nWGRIValf~F~~~l 104 (157)
T 2nl9_A 39 ALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFV 104 (157)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHCCCSTTCCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 3456677666666677766655432 1 2344445666777 599999888877544
No 19
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=28.51 E-value=10 Score=17.10 Aligned_cols=11 Identities=45% Similarity=1.096 Sum_probs=8.8
Q ss_pred CCCchHHHHHH
Q 031421 27 GDGNCQFRALS 37 (160)
Q Consensus 27 gDGnClF~ais 37 (160)
.||.|-||.+.
T Consensus 4 adgacswrgle 14 (23)
T 3ox7_P 4 ADGACSWRGLE 14 (26)
T ss_pred cCcccccccch
Confidence 68999998663
No 20
>1o0l_A Apoptosis regulator BCL-W; helical bundle, binding groove, BH3; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=27.49 E-value=95 Score=21.92 Aligned_cols=54 Identities=11% Similarity=0.201 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHhhcccccccccc------c----hHHHHHHhhc-CCceeCcHHHHHHHHHHh
Q 031421 46 YHKHVRKEVVKQLKDCRSMYEGYVP------M----KYKRYYKNMA-KVGEWGDHVTLQAAADKF 99 (160)
Q Consensus 46 ~~~~lR~~~v~~i~~n~~~f~~~i~------~----~~~~yl~~m~-~~g~wg~~~ei~A~a~~~ 99 (160)
-+..||+..-+..++|++.|..+.. + .+..-.+.+- ..-+||--+.+.++|-.+
T Consensus 47 v~~~Lr~~gdele~~~~~~f~~~~~~l~i~~~~~~~~F~~Va~elF~dGinWGRIValfaF~g~L 111 (188)
T 1o0l_A 47 LHQAMRAAGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAAL 111 (188)
T ss_dssp THHHHHHHHHHHHHHCSCSHHHHHHHTTTCSSTTHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3577887777777778888765542 1 2333333444 334899888887766544
No 21
>3fz2_A Minor tail protein U; mixed alpha-beta fold, viral protein; 2.70A {Enterobacteria phage lambda} SCOP: d.323.1.1 PDB: 3fzb_A 1z1z_A
Probab=27.00 E-value=36 Score=23.10 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=16.4
Q ss_pred CcchHHHHHHHHHHHHhhcc
Q 031421 43 SPEYHKHVRKEVVKQLKDCR 62 (160)
Q Consensus 43 ~~~~~~~lR~~~v~~i~~n~ 62 (160)
+...|.+||+++++.++++-
T Consensus 2 ~~~iHt~IR~aVld~L~~~~ 21 (134)
T 3fz2_A 2 SHMKHTELRAAVLDALEKHD 21 (134)
T ss_dssp -CCHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHHhcC
Confidence 44578999999999999874
No 22
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=25.43 E-value=19 Score=24.72 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=28.3
Q ss_pred CCCeEEEEeCCCCcceeeecCCCCCCCCCccccccc
Q 031421 124 PKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWL 159 (160)
Q Consensus 124 ~~~~I~L~~~~~~HY~~l~~~~~~~~~~~~~~~~~~ 159 (160)
..+++.|.|...+ ..|....++|.-.|-+++-|+
T Consensus 39 n~ptLvlIYDe~G--~lLW~qr~vP~le~~I~~eWL 72 (148)
T 3bqa_A 39 QSPTMTLIYDENG--QLLWAQRDVPWLMKMIQPDWL 72 (148)
T ss_dssp TCSCEEEEECTTS--CEEEESSCCHHHHHHSCGGGS
T ss_pred CCCeEEEEEcCCC--cEEEecCcchHHHhhcCHHHh
Confidence 3578999996545 469999999999999999997
No 23
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=24.99 E-value=47 Score=22.94 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHhhcccccccccc-------c---hHHHHHHhhcCCc--eeCcHHHHHHHHHHh
Q 031421 46 YHKHVRKEVVKQLKDCRSMYEGYVP-------M---KYKRYYKNMAKVG--EWGDHVTLQAAADKF 99 (160)
Q Consensus 46 ~~~~lR~~~v~~i~~n~~~f~~~i~-------~---~~~~yl~~m~~~g--~wg~~~ei~A~a~~~ 99 (160)
....||...-+..++++..|..+.. . .+..-.+.+-.+| .||-=+.+.+++-.+
T Consensus 39 ~~~~Lr~vgdele~~~~~~f~~m~~~L~it~~~a~~~F~~Va~elF~dGi~NWGRIVaLfaFgg~l 104 (157)
T 4hw4_A 39 ALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFV 104 (157)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHCCCSHHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 3456777666666677776665442 1 2333334555666 899888888766444
No 24
>2v27_A Phenylalanine hydroxylase; cold adaptation, tetrahydrobiopterin, stability, flexibility, alkaptonuria, oxidoreductase; 1.50A {Colwellia psychrerythraea 34H} PDB: 2v28_A
Probab=21.94 E-value=26 Score=26.76 Aligned_cols=81 Identities=16% Similarity=0.153 Sum_probs=48.8
Q ss_pred HHHHHHHHhh-CCcEEeeeCC--CCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhccc-ccc-------------ccc-
Q 031421 8 HQRLLQRLNV-YGLYEVKVSG--DGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRS-MYE-------------GYV- 69 (160)
Q Consensus 8 ~~~l~~~l~~-~gl~~~~v~g--DGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~-~f~-------------~~i- 69 (160)
.+.+++.|++ -|..++.|+| ...=||..+|.-.+-.. +||+...+ .|. +++
T Consensus 64 l~dvn~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~R~Fp~t-----------~yIR~~~~~~YtpEPDifHEl~GHvPlLa 132 (275)
T 2v27_A 64 LDEVSKVLKVSTGWECYPVPALIGFGEFFRLLSEKKFPVA-----------TFIRSREEMDYLQEPDIFHEIFGHCPLLT 132 (275)
T ss_dssp HHHHHHHHHHHHSCEEEEECSCCCHHHHHHHHHTTEEEEE-----------CCCCCSTTTTCCSSCCHHHHHHHTGGGGG
T ss_pred HHHHHHHHHhccCCEEeeccccCCHHHHHHHHhcCcccee-----------eeecCcccccCCCcchhHHHHhcchHhhc
Confidence 4567778877 8999999987 55567777776655433 23333222 111 111
Q ss_pred cchHHHHHHhhcCCceeCcHHHHHHHHHHh
Q 031421 70 PMKYKRYYKNMAKVGEWGDHVTLQAAADKF 99 (160)
Q Consensus 70 ~~~~~~yl~~m~~~g~wg~~~ei~A~a~~~ 99 (160)
+..+.+|...+..-+.=+.+.++..+|++|
T Consensus 133 dP~FA~f~q~~G~~~l~A~~~~~~~LarlY 162 (275)
T 2v27_A 133 NSSFANYTEAYGKMGLNATKEQRVFLARLY 162 (275)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHhhhh
Confidence 236777777665444445666777777765
No 25
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=21.42 E-value=1.3e+02 Score=23.33 Aligned_cols=43 Identities=7% Similarity=0.070 Sum_probs=32.2
Q ss_pred CCCCchHHHHHHHHHhcCcc--hHHHHHHHHHHHHhhcccccccc
Q 031421 26 SGDGNCQFRALSDQMYKSPE--YHKHVRKEVVKQLKDCRSMYEGY 68 (160)
Q Consensus 26 ~gDGnClF~ais~~l~~~~~--~~~~lR~~~v~~i~~n~~~f~~~ 68 (160)
..|+||.-.|.-.+|....- ....+.++.-+|..-++..|..+
T Consensus 107 q~dNNCwVNaa~l~LQ~~~~~F~~~~l~~aw~~f~~Gd~~~FVa~ 151 (315)
T 2fe8_A 107 WADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCAL 151 (315)
T ss_dssp CCTTTHHHHHHHHHHHTSCCCBSSHHHHHHHHHHHHTCCHHHHHH
T ss_pred ecCCccHHHHHHHHHHhcCCccCCHHHHHHHHHHhCCChHHHHHH
Confidence 47999999999888876543 34577777788887777776554
No 26
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=21.19 E-value=15 Score=22.92 Aligned_cols=8 Identities=63% Similarity=1.057 Sum_probs=5.9
Q ss_pred CCCch-HHH
Q 031421 27 GDGNC-QFR 34 (160)
Q Consensus 27 gDGnC-lF~ 34 (160)
||||| ||+
T Consensus 63 GdGd~tLFh 71 (85)
T 1v54_G 63 GDGNHTFFH 71 (85)
T ss_dssp TTSSSCTTC
T ss_pred CCCCcCccc
Confidence 89987 553
No 27
>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A {Caenorhabditis elegans} SCOP: f.1.4.1 PDB: 1ty4_A
Probab=20.92 E-value=1.1e+02 Score=21.35 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHhhCCcEE
Q 031421 3 DASLDHQRLLQRLNVYGLYE 22 (160)
Q Consensus 3 ~~~~~~~~l~~~l~~~gl~~ 22 (160)
-+.+..+=|.-+|+..|+.-
T Consensus 13 ~~~Lv~DYI~yrL~~~g~~~ 32 (175)
T 1ohu_A 13 IEGFVVDYFTHRIRQNGMEW 32 (175)
T ss_dssp HHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHccCCCCc
Confidence 35566666777888888754
No 28
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=20.40 E-value=1.3e+02 Score=19.49 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhCCcEEeeeCCCCchHHHHHHHHHhc
Q 031421 6 LDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYK 42 (160)
Q Consensus 6 ~~~~~l~~~l~~~gl~~~~v~gDGnClF~ais~~l~~ 42 (160)
.+...|.+.|+++|+.++-|.|..+-..++.+...+.
T Consensus 61 ~dl~~L~~~l~~~gl~~vGV~g~~~~~~~~~a~~~GL 97 (120)
T 3ghf_A 61 VNWPELHKIVTSTGLRIIGVSGCKDASLKVEIDRMGL 97 (120)
T ss_dssp CCHHHHHHHHHTTTCEEEEEESCCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHCCC
Confidence 4577889999999999999988776667777776653
No 29
>3ilc_A BCL-2-like protein 1; apoptosis, BH3 domain, alternative splicing, cytoplasm, membrane, mitochondrion, transmembrane; 1.64A {Mus musculus} PDB: 3ihd_A 2bzw_A 1pq1_A 1pq0_A 3ihc_A 3iih_A 1af3_A 3ihf_A 3ilb_A 3iig_A 3ihe_A
Probab=20.36 E-value=95 Score=22.39 Aligned_cols=55 Identities=9% Similarity=0.197 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHHHhhcccccccccc-------c---hHHHHHHhhcC-CceeCcHHHHHHHHHHh
Q 031421 45 EYHKHVRKEVVKQLKDCRSMYEGYVP-------M---KYKRYYKNMAK-VGEWGDHVTLQAAADKF 99 (160)
Q Consensus 45 ~~~~~lR~~~v~~i~~n~~~f~~~i~-------~---~~~~yl~~m~~-~g~wg~~~ei~A~a~~~ 99 (160)
.-+..||...-+..++++..|..... . .|.+-.+.+-. .-.||--+.+.+++-.+
T Consensus 86 ~V~~~Lr~lGdElE~~~~~~F~~m~~qL~it~~~a~~~F~~Va~elF~DGiNWGRIVaLfaFgg~L 151 (197)
T 3ilc_A 86 AVKQALREAGDEFELRARRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGAL 151 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCTTCCHHHHHHHHGGGGTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCcchHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 35678888888888888988876542 1 23333334433 34899888888777544
No 30
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=20.14 E-value=17 Score=23.33 Aligned_cols=8 Identities=63% Similarity=1.057 Sum_probs=5.9
Q ss_pred CCCch-HHH
Q 031421 27 GDGNC-QFR 34 (160)
Q Consensus 27 gDGnC-lF~ 34 (160)
||||| ||+
T Consensus 75 GDG~~tLFh 83 (97)
T 2y69_G 75 GDGNHTFFH 83 (97)
T ss_dssp TTSSSCTTC
T ss_pred CCCCcCccc
Confidence 89987 553
Done!