BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031422
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|B Chain B, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|C Chain C, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|D Chain D, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
Length = 262
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 8/136 (5%)
Query: 21 DVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKM 79
++ N + AE+L++ A +GA ++++ ELF+ GY F RE+ F A+ + T +
Sbjct: 15 ELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNF--ESREEVFDVAQQIPEGETTTFL 72
Query: 80 QELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPG 139
ELA+ELG+ + E++ N YNS ++ G +G YRK H+ Y+EK +F PG
Sbjct: 73 XELARELGLYIVAGTAEKSGNYLYNSAVVVGPRGY-IGKYRKIHL----FYREKVFFEPG 127
Query: 140 DTGFKVFQTKFAKIGV 155
D GFKVF FAK+GV
Sbjct: 128 DLGFKVFDIGFAKVGV 143
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IVZ|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
Length = 262
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 25 NLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83
N + AE+L++ A +GA ++++ ELF+ GY F RE+ F+ A+ + T + ++A
Sbjct: 19 NYSKAEKLIKEASKQGAQLVVLPELFDTGYNF--ETREEVFEIAQKIPEGETTTFLMDVA 76
Query: 84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF 143
++ GV + E+ + YNS ++ G +G YRK H+ Y+EKF+F PGD GF
Sbjct: 77 RDTGVYIVAGTAEKDGDVLYNSAVVVGPRGF-IGKYRKIHL----FYREKFFFEPGDLGF 131
Query: 144 KVFQTKFAKIGV 155
+VF F K+GV
Sbjct: 132 RVFDLGFMKVGV 143
>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|E Chain E, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|F Chain F, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|G Chain G, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|H Chain H, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
Length = 405
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 12/163 (7%)
Query: 5 KRREVVVSALQFACTDDVSTNLAT--------AERLVRAAHGKGANIILIQELFE-GYYF 55
KRR V V A+Q + + + + +++AA G NI+ QE + + F
Sbjct: 69 KRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAF 128
Query: 56 CQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE---EANNAHYNSIAIIDAD 112
C ++ + + A+ ++ PT + ELAK +V+ S E E +N+ +I
Sbjct: 129 CTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNS 188
Query: 113 GSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 155
G LG +RK+HIP + E Y+ G+TG VF+T+F K+ V
Sbjct: 189 GRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETEFGKLAV 231
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
pdb|2W1V|B Chain B, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
Length = 276
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 12/152 (7%)
Query: 11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
++ +Q + S NL A LVR A +GANI+ + E F Y +F
Sbjct: 6 LALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPY-----GTTYFPDYAEK 60
Query: 71 KDHPTILKMQELAKELGV-VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHI--PDG 127
+ K+ E+AKE + ++ S EE YN+ ++ DGS L +RK H+ D
Sbjct: 61 IPGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDV 120
Query: 128 PG---YQEKFYFNPGDTGFKVFQTKFAKIGVG 156
PG +QE +PGD+ F F T + K+G+G
Sbjct: 121 PGKITFQESKTLSPGDS-FSTFDTPYCKVGLG 151
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF4|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF5|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF5|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF7|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF7|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF8|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
pdb|1UF8|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
Length = 303
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 21/142 (14%)
Query: 32 LVRAAHGKGANIILIQEL-----FEGYYFC-QAQREDFFQRAKPYKDHPTILKMQELAKE 85
++ A +GAN I+ EL F ++F +A+ + F++ P P + + E A E
Sbjct: 30 MLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMP---GPVVRPLFEKAAE 86
Query: 86 LGVVMPVSF----FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ--------EK 133
LG+ + + E +N+ ++D G +G YRK H+P Y+ EK
Sbjct: 87 LGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEK 146
Query: 134 FYFNPGDTGFKVFQTKFAKIGV 155
YF PGD GF V+ AK+G+
Sbjct: 147 RYFEPGDLGFPVYDVDAAKMGM 168
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 21/142 (14%)
Query: 32 LVRAAHGKGANIILIQEL-----FEGYYFC-QAQREDFFQRAKPYKDHPTILKMQELAKE 85
++ A +GAN I+ EL F ++F +A+ + F++ P P + + E A E
Sbjct: 30 MLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMP---GPVVRPLFEKAAE 86
Query: 86 LGVVMPVSF----FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ--------EK 133
LG+ + + E +N+ ++D G +G YRK H+P Y+ EK
Sbjct: 87 LGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEK 146
Query: 134 FYFNPGDTGFKVFQTKFAKIGV 155
YF PGD GF V+ AK+G+
Sbjct: 147 RYFEPGDLGFPVYDVDAAKMGM 168
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
Length = 304
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 36/173 (20%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-----FEGYYF 55
+ + + RE VV L D+ TN A+ +G N I+ EL F ++F
Sbjct: 15 IARAETREQVVGRLL-----DMLTNAAS----------RGVNFIVFPELALTTFFPRWHF 59
Query: 56 C-QAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF----FEEANNAHYNSIAIID 110
+A+ + F++ P P + + E A ELG+ + + E +N+ ++D
Sbjct: 60 TDEAELDSFYETEMP---GPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVD 116
Query: 111 ADGSDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKVFQTKFAKIGV 155
G +G YRK H+P Y+ EK YF PGD GF V+ AK+G+
Sbjct: 117 KSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGM 169
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|B Chain B, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|C Chain C, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|D Chain D, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
Length = 304
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 36/173 (20%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-----FEGYYF 55
+ + + RE VV L D+ TN A+ +G N I+ EL F ++F
Sbjct: 15 IARAETREQVVGRLL-----DMLTNAAS----------RGVNFIVFPELALTTFFPRWHF 59
Query: 56 C-QAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF----FEEANNAHYNSIAIID 110
+A+ + F++ P P + + E A ELG+ + + E +N+ ++D
Sbjct: 60 TDEAELDSFYETEMP---GPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVD 116
Query: 111 ADGSDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKVFQTKFAKIGV 155
G +G YRK H+P Y+ EK YF PGD GF V+ AK+G+
Sbjct: 117 KSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGM 169
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|B Chain B, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|C Chain C, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|D Chain D, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
Length = 304
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 36/173 (20%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-----FEGYYF 55
+ + + RE VV L D+ TN A+ +G N I+ EL F ++F
Sbjct: 15 IARAETREQVVGRLL-----DMLTNAAS----------RGVNFIVFPELALTTFFPRWHF 59
Query: 56 C-QAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF----FEEANNAHYNSIAIID 110
+A+ + F++ P P + + E A ELG+ + + E +N+ ++D
Sbjct: 60 TDEAELDSFYETEMP---GPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVD 116
Query: 111 ADGSDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKVFQTKFAKIGV 155
G +G YRK H+P Y+ EK YF PGD GF V+ AK+G+
Sbjct: 117 KSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGM 169
>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
pdb|1F89|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
Length = 291
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 72/161 (44%), Gaps = 13/161 (8%)
Query: 7 REVVVSALQFA-CTDDVSTNLATAERLVRAAHGKGAN--IILIQELFEGYYFCQAQREDF 63
+++ V+ +Q + + D NL A + A + + ++++ E F Y R+ +
Sbjct: 9 QKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRK-Y 67
Query: 64 FQRAKPYKDHPTILKMQELAKELGVVM---PVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
+ P + ++ + LA + +++ + + + YN+ I + DG + +R
Sbjct: 68 SEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHR 127
Query: 121 KSH-----IPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVG 156
K H IP+G + E +PG+ + TK+ K GVG
Sbjct: 128 KVHLFDVDIPNGISFHESETLSPGEKSTTI-DTKYGKFGVG 167
>pdb|2E2K|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
Length = 334
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 20/149 (13%)
Query: 10 VVSALQFACT-----DDVSTNLATAERLVRAAHGKGAN------IILIQELFEGYYFCQA 58
+V+A+QF D+ N+ E ++R H A II + +G +
Sbjct: 15 LVAAIQFPVPIVNSRKDIDHNI---ESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKW 71
Query: 59 QREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGL 118
E+F P K+ K + AK GV + ++N YN+ IID G +
Sbjct: 72 LSEEFLLDV-PGKETELYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILK 130
Query: 119 YRKSHIPDGPGYQEKFYFNPGDTGFKVFQ 147
YRK P P E +Y PGD G V +
Sbjct: 131 YRKL-FPWNP--IEPWY--PGDLGMPVCE 154
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
++ Q +D+ N A+ ++ A K ++ + E F+ + ++ D
Sbjct: 17 IAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMAT--- 73
Query: 71 KDHPTILKMQELAKELGVVMPVSFF---EEANNAH-YNSIAIIDADGSDLGLYRKSHIPD 126
D + K +ELA++ + + + + ++ AH +N+ IID+DG Y K H+ D
Sbjct: 74 -DCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFD 132
>pdb|2DYU|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
Cysteine- Glutamate-lysine Catalytic Triad
pdb|2DYU|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
Cysteine- Glutamate-lysine Catalytic Triad
pdb|2DYV|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2DYV|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
Length = 334
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 20/149 (13%)
Query: 10 VVSALQFACT-----DDVSTNLATAERLVRAAHGKGAN------IILIQELFEGYYFCQA 58
+V+A+QF D+ N+ E ++R H A II + +G +
Sbjct: 15 LVAAIQFPVPIVNSRKDIDHNI---ESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKW 71
Query: 59 QREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGL 118
E+F P K+ K + AK GV + ++N YN+ IID G +
Sbjct: 72 LSEEFLLDV-PGKETELYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILK 130
Query: 119 YRKSHIPDGPGYQEKFYFNPGDTGFKVFQ 147
YRK P P E +Y PGD G V +
Sbjct: 131 YRKL-FPWNP--IEPWY--PGDLGMPVCE 154
>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|B Chain B, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|C Chain C, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|D Chain D, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3SYT|A Chain A, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|B Chain B, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|C Chain C, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|D Chain D, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
Length = 680
Score = 30.8 bits (68), Expect = 0.39, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 11/130 (8%)
Query: 17 ACTD-----DVSTNLATAERLVRAAHGKGANIILIQEL-FEGYYFCQAQREDFFQRAKPY 70
ACT D + N A+ + RA H GA + + EL GY +D A
Sbjct: 17 ACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAV-- 74
Query: 71 KDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGY 130
+L + + +L V+ V + YN+ A++ G+ LG+ KS++P +
Sbjct: 75 --EDALLDLVTESADLLPVLVVGAPLRHRHRIYNT-AVVIHRGAVLGVVPKSYLPTYREF 131
Query: 131 QEKFYFNPGD 140
E+ PGD
Sbjct: 132 YERRQMAPGD 141
>pdb|3SDB|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Apo Form
pdb|3SEQ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEZ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SZG|A Chain A, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|B Chain B, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|C Chain C, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|D Chain D, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
Length = 680
Score = 30.4 bits (67), Expect = 0.41, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 11/130 (8%)
Query: 17 ACTD-----DVSTNLATAERLVRAAHGKGANIILIQEL-FEGYYFCQAQREDFFQRAKPY 70
ACT D + N A+ + RA H GA + + EL GY +D A
Sbjct: 17 ACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAV-- 74
Query: 71 KDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGY 130
+L + + +L V+ V + YN+ A++ G+ LG+ KS++P +
Sbjct: 75 --EDALLDLVTESADLLPVLVVGAPLRHRHRIYNT-AVVIHRGAVLGVVPKSYLPTYREF 131
Query: 131 QEKFYFNPGD 140
E+ PGD
Sbjct: 132 YERRQMAPGD 141
>pdb|1SLM|A Chain A, Crystal Structure Of Fibroblast Stromelysin-1: The
C-Truncated Human Proenzyme
Length = 255
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDH-PTILKMQELAKELGV 88
AA G+ ++ L+Q+ E YY + + F +R KD P + K++E+ K LG+
Sbjct: 6 AARGEDTSMNLVQKYLENYYDLKKDVKQFVRR----KDSGPVVKKIREMQKFLGL 56
>pdb|3O76|A Chain A, 1.8 Angstroms Molecular Structure Of Mouse Liver
Glutathione S- Transferase Mutant C47a Complexed With
S-(P-Nitrobenzyl)glutathione
pdb|3O76|B Chain B, 1.8 Angstroms Molecular Structure Of Mouse Liver
Glutathione S- Transferase Mutant C47a Complexed With
S-(P-Nitrobenzyl)glutathione
Length = 209
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 56 CQAQREDFFQRAKPYKDHPTILK--MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADG 113
C+A R + + +K+ + MQ L K + + FE+ + Y S AI+ G
Sbjct: 14 CEAMRMLLADQGQSWKEEVVTIDTWMQGLLKPTALYGQLPKFEDGDLTLYQSNAILRHLG 73
Query: 114 SDLGLYRKSH 123
LGLY K+
Sbjct: 74 RSLGLYGKNQ 83
>pdb|2ETS|A Chain A, Crystal Structure Of A Bacterial Domain Of Unknown
Function From Duf1798 Family (Mw1337) From
Staphylococcus Aureus Subsp. Aureus At 2.25 A
Resolution
Length = 128
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 56 CQAQREDFFQRAKPYKDH-PTILKMQELAKELGVVMP 91
Q Q DF+Q KPY +H +IL +L +E + +P
Sbjct: 36 SQQQDHDFYQTVKPYTEHIDSILNEIKLHREFIIEVP 72
>pdb|1GTI|A Chain A, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|B Chain B, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|C Chain C, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|D Chain D, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|E Chain E, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
pdb|1GTI|F Chain F, Modified Glutathione S-Transferase (Pi) Complexed With S
(P- Nitrobenzyl)glutathione
Length = 209
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 56 CQAQREDFFQRAKPYKDHPTILK--MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADG 113
C+A R + + +K+ + MQ L K + + FE+ + Y S AI+ G
Sbjct: 14 CEAMRMLLADQGQSWKEEVVTIDTWMQGLLKPTXLYGQLPKFEDGDLTLYQSNAILRHLG 73
Query: 114 SDLGLYRKSH 123
LGLY K+
Sbjct: 74 RSLGLYGKNQ 83
>pdb|2OAD|A Chain A, Structure Of Glutathione-S-Transferase C169a Mutant
pdb|2OAD|B Chain B, Structure Of Glutathione-S-Transferase C169a Mutant
Length = 209
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 56 CQAQREDFFQRAKPYKDHPTILK--MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADG 113
C+A R + + +K+ + MQ L K + + FE+ + Y S AI+ G
Sbjct: 14 CEAMRMLLADQGQSWKEEVVTIDTWMQGLLKPTCLYGQLPKFEDGDLTLYQSNAILRHLG 73
Query: 114 SDLGLYRKSH 123
LGLY K+
Sbjct: 74 RSLGLYGKNQ 83
>pdb|1GLP|A Chain A, 1.8 Angstroms Molecular Structure Of Mouse Liver Class Pi
Glutathione S-Transferase Complexed With
S-(P-Nitrobenzyl) Glutathione And Other Inhibitors
pdb|1GLP|B Chain B, 1.8 Angstroms Molecular Structure Of Mouse Liver Class Pi
Glutathione S-Transferase Complexed With
S-(P-Nitrobenzyl) Glutathione And Other Inhibitors
pdb|1GLQ|A Chain A, 1.8 Angstroms Molecular Structure Of Mouse Liver Class Pi
Glutathione S-Transferase Complexed With
S-(P-Nitrobenzyl) Glutathione And Other Inhibitors
pdb|1GLQ|B Chain B, 1.8 Angstroms Molecular Structure Of Mouse Liver Class Pi
Glutathione S-Transferase Complexed With
S-(P-Nitrobenzyl) Glutathione And Other Inhibitors
pdb|2GLR|A Chain A, Molecular Structure At 1.8 Angstroms Of Mouse Liver Class
Pi Glutathione S-Transferase Complexed With S-(P-
Nitrobenzyl)glutathione And Other Inhibitors
pdb|2GLR|B Chain B, Molecular Structure At 1.8 Angstroms Of Mouse Liver Class
Pi Glutathione S-Transferase Complexed With S-(P-
Nitrobenzyl)glutathione And Other Inhibitors
pdb|1GSY|A Chain A, Glutathione S-Transferase Yfyf, Class Pi, Complexed With
Glutathione
pdb|1GSY|B Chain B, Glutathione S-Transferase Yfyf, Class Pi, Complexed With
Glutathione
pdb|1BAY|A Chain A, Glutathione S-Transferase Yfyf Cys 47-Carboxymethylated
Class Pi, Free Enzyme
pdb|1BAY|B Chain B, Glutathione S-Transferase Yfyf Cys 47-Carboxymethylated
Class Pi, Free Enzyme
Length = 209
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 56 CQAQREDFFQRAKPYKDHPTILK--MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADG 113
C+A R + + +K+ + MQ L K + + FE+ + Y S AI+ G
Sbjct: 14 CEAMRMLLADQGQSWKEEVVTIDTWMQGLLKPTCLYGQLPKFEDGDLTLYQSNAILRHLG 73
Query: 114 SDLGLYRKSH 123
LGLY K+
Sbjct: 74 RSLGLYGKNQ 83
>pdb|4F4H|A Chain A, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
pdb|4F4H|B Chain B, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
From Burkholderia Thailandensis
Length = 565
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 103 YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 155
YN+ ++I G G YRK +P+ + EK YF D VF+ K GV
Sbjct: 116 YNAASLI-VGGEVAGTYRKQDLPNTEVFDEKRYFAT-DAAPYVFELNGVKFGV 166
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GID|B Chain B, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GLK|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2)
Length = 540
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAER-----LVRAAHGKGANIILIQELFEGY-- 53
+++GKR V C DV L AER +++A+ G G I E E +
Sbjct: 196 LQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPI 255
Query: 54 YFCQAQRE-----DFFQRAKPYKDHPTILKMQELAKELG 87
F Q Q E F + + H L++Q LA + G
Sbjct: 256 LFRQVQSEIPGSPIFLMKLAQHARH---LEVQILADQYG 291
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAER-----LVRAAHGKGANIILIQELFEGY-- 53
+++GKR V C DV L AER +++A+ G G I E E +
Sbjct: 212 LQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPI 271
Query: 54 YFCQAQRE-----DFFQRAKPYKDHPTILKMQELAKELG 87
F Q Q E F + + H L++Q LA + G
Sbjct: 272 LFRQVQSEIPGSPIFLMKLAQHARH---LEVQILADQYG 307
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAER-----LVRAAHGKGANIILIQELFEGY-- 53
+++GKR V C DV L AER +++A+ G G I E E +
Sbjct: 212 LQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPI 271
Query: 54 YFCQAQRE-----DFFQRAKPYKDHPTILKMQELAKELG 87
F Q Q E F + + H L++Q LA + G
Sbjct: 272 LFRQVQSEIPGSPIFLMKLAQHARH---LEVQILADQYG 307
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 44 ILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE 81
I++Q+LF+ Y + Q+ KPYKD+ L+ Q+
Sbjct: 157 IVVQDLFKVYNALREQKPYSLPPVKPYKDYIKWLEKQD 194
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 1 MEKGKRREVVVSALQFACTDDVSTNLATAER-----LVRAAHGKGANIILIQELFEGY-- 53
+++GKR V C DV L AER +++A+ G G I E E +
Sbjct: 206 LQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPI 265
Query: 54 YFCQAQRE-----DFFQRAKPYKDHPTILKMQELAKELG 87
F Q Q E F + + H L++Q LA + G
Sbjct: 266 LFRQVQSEIPGSPIFLMKLAQHARH---LEVQILADQYG 301
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 16 FACTDDVSTNLATAERLVRAAHGKGANIILIQELFEG 52
F+ +DVS +A A+ L+ A+ + A I+L++ + G
Sbjct: 258 FSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAG 294
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 40 GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88
G N + LF+ + ED+FQ + D T+ K+ +L E G+
Sbjct: 185 GVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGI 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,249,593
Number of Sequences: 62578
Number of extensions: 226578
Number of successful extensions: 592
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 31
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)