Query 031422
Match_columns 160
No_of_seqs 119 out of 1144
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 13:53:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03381 agmatine_aguB N-carb 100.0 4.5E-36 9.8E-41 223.2 18.0 152 9-160 1-152 (279)
2 PLN02747 N-carbamolyputrescine 100.0 3.4E-35 7.5E-40 220.3 17.8 157 4-160 2-158 (296)
3 cd07568 ML_beta-AS_like mammal 100.0 1.1E-34 2.4E-39 216.6 17.6 154 7-160 2-164 (287)
4 cd07587 ML_beta-AS mammalian-l 100.0 1.4E-34 3.1E-39 221.4 18.0 156 5-160 60-227 (363)
5 cd07573 CPA N-carbamoylputresc 100.0 3.6E-33 7.8E-38 208.1 17.8 152 9-160 1-153 (284)
6 PLN00202 beta-ureidopropionase 100.0 5.2E-33 1.1E-37 215.0 17.9 154 6-160 84-248 (405)
7 PF00795 CN_hydrolase: Carbon- 100.0 3.4E-33 7.4E-38 196.3 14.2 150 10-160 1-163 (186)
8 PLN02504 nitrilase 100.0 1.6E-32 3.5E-37 209.2 18.1 149 7-160 23-188 (346)
9 cd07576 R-amidase_like Pseudom 100.0 1.2E-32 2.7E-37 202.2 16.8 143 10-160 1-144 (254)
10 cd07579 nitrilase_1_R2 Second 100.0 2.1E-32 4.5E-37 203.6 16.4 138 10-160 1-138 (279)
11 PRK10438 C-N hydrolase family 100.0 2.2E-32 4.8E-37 201.2 16.4 141 7-160 2-143 (256)
12 cd07584 nitrilase_6 Uncharacte 100.0 2.8E-32 6.2E-37 200.8 16.5 145 10-160 1-148 (258)
13 cd07564 nitrilases_CHs Nitrila 100.0 2.9E-32 6.3E-37 204.5 16.6 147 9-160 1-159 (297)
14 cd07583 nitrilase_5 Uncharacte 100.0 3.3E-32 7.2E-37 199.9 16.5 143 10-160 1-145 (253)
15 PLN02798 nitrilase 100.0 5.2E-32 1.1E-36 202.2 17.7 151 4-160 6-165 (286)
16 cd07569 DCase N-carbamyl-D-ami 100.0 4.1E-32 8.9E-37 204.1 17.1 154 7-160 2-173 (302)
17 cd07570 GAT_Gln-NAD-synth Glut 100.0 2E-32 4.4E-37 201.9 14.3 144 10-160 1-147 (261)
18 cd07572 nit Nit1, Nit 2, and r 100.0 5.9E-32 1.3E-36 199.7 16.2 147 10-160 1-155 (265)
19 cd07581 nitrilase_3 Uncharacte 100.0 1E-31 2.3E-36 197.4 16.5 147 11-160 1-149 (255)
20 cd07580 nitrilase_2 Uncharacte 100.0 2E-31 4.3E-36 197.3 16.7 145 10-160 1-146 (268)
21 cd07578 nitrilase_1_R1 First n 100.0 3.9E-31 8.5E-36 194.8 16.9 145 9-160 1-148 (258)
22 cd07575 Xc-1258_like Xanthomon 100.0 6.1E-31 1.3E-35 193.2 17.2 141 9-160 1-142 (252)
23 cd07585 nitrilase_7 Uncharacte 100.0 3.8E-31 8.3E-36 195.1 16.0 141 10-160 1-142 (261)
24 cd07577 Ph0642_like Pyrococcus 100.0 4.3E-31 9.4E-36 194.6 16.0 142 10-160 1-143 (259)
25 cd07567 biotinidase_like bioti 100.0 2.9E-31 6.3E-36 198.4 15.1 147 9-160 1-182 (299)
26 COG0388 Predicted amidohydrola 100.0 7E-31 1.5E-35 195.0 16.7 149 8-160 2-151 (274)
27 cd07586 nitrilase_8 Uncharacte 100.0 7.4E-31 1.6E-35 194.3 15.0 143 10-160 1-145 (269)
28 cd07197 nitrilase Nitrilase su 100.0 1.9E-30 4.1E-35 190.1 16.6 144 11-160 1-145 (253)
29 cd07566 ScNTA1_like Saccharomy 100.0 1.5E-30 3.3E-35 194.5 15.8 150 10-160 1-169 (295)
30 PRK02628 nadE NAD synthetase; 100.0 1.8E-30 3.9E-35 212.4 16.4 150 7-160 11-180 (679)
31 PRK13981 NAD synthetase; Provi 100.0 2.3E-30 4.9E-35 207.8 15.3 144 9-160 1-147 (540)
32 cd07565 aliphatic_amidase alip 100.0 7.9E-30 1.7E-34 190.7 17.0 144 9-160 1-155 (291)
33 PLN02339 NAD+ synthase (glutam 100.0 1.6E-30 3.4E-35 212.6 14.1 150 7-160 2-176 (700)
34 cd07571 ALP_N-acyl_transferase 100.0 2.7E-30 5.8E-35 191.5 13.6 137 9-160 1-162 (270)
35 cd07574 nitrilase_Rim1_like Un 100.0 9.8E-30 2.1E-34 189.3 14.1 147 9-160 1-155 (280)
36 cd07582 nitrilase_4 Uncharacte 100.0 3.3E-29 7.2E-34 187.7 16.2 150 10-160 2-175 (294)
37 PRK13287 amiF formamidase; Pro 100.0 2.3E-28 4.9E-33 185.5 17.3 147 6-160 11-167 (333)
38 PRK13286 amiE acylamide amidoh 100.0 1.6E-27 3.5E-32 181.3 16.9 145 7-160 11-168 (345)
39 TIGR00546 lnt apolipoprotein N 99.9 6.6E-27 1.4E-31 181.5 12.8 139 7-160 158-322 (391)
40 KOG0807 Carbon-nitrogen hydrol 99.9 8.6E-27 1.9E-31 164.0 8.9 148 9-160 16-172 (295)
41 KOG0806 Carbon-nitrogen hydrol 99.9 8.1E-26 1.8E-30 165.2 10.6 154 6-160 11-173 (298)
42 PRK00302 lnt apolipoprotein N- 99.9 8.8E-25 1.9E-29 174.5 13.3 139 7-160 218-382 (505)
43 PRK12291 apolipoprotein N-acyl 99.9 5.4E-24 1.2E-28 165.8 14.0 133 9-160 195-350 (418)
44 KOG0808 Carbon-nitrogen hydrol 99.9 2.5E-23 5.3E-28 148.5 13.9 153 7-159 72-236 (387)
45 KOG0805 Carbon-nitrogen hydrol 99.9 1.7E-23 3.7E-28 148.1 12.9 149 7-160 16-181 (337)
46 PRK13825 conjugal transfer pro 99.9 9.3E-21 2E-25 146.1 14.6 135 8-160 185-331 (388)
47 COG0815 Lnt Apolipoprotein N-a 99.8 1.5E-17 3.3E-22 132.4 12.6 139 7-160 226-393 (518)
48 KOG2303 Predicted NAD synthase 99.5 1.3E-14 2.9E-19 112.1 4.8 130 5-141 1-134 (706)
49 cd07565 aliphatic_amidase alip 92.6 1.8 3.9E-05 32.6 9.3 70 32-118 161-232 (291)
50 cd07567 biotinidase_like bioti 90.8 2.1 4.5E-05 32.5 7.9 71 32-119 188-260 (299)
51 cd07576 R-amidase_like Pseudom 90.8 3.5 7.6E-05 30.0 9.0 68 33-117 151-220 (254)
52 cd07584 nitrilase_6 Uncharacte 90.1 4.2 9.1E-05 29.7 8.9 69 32-117 154-224 (258)
53 cd07572 nit Nit1, Nit 2, and r 88.7 2.8 6E-05 30.8 7.1 69 32-116 161-232 (265)
54 PRK13286 amiE acylamide amidoh 88.3 6.1 0.00013 30.7 8.9 70 32-118 174-245 (345)
55 cd07585 nitrilase_7 Uncharacte 88.2 5.5 0.00012 29.1 8.4 73 32-117 148-222 (261)
56 cd07587 ML_beta-AS mammalian-l 88.2 3.6 7.7E-05 32.2 7.6 67 34-116 235-319 (363)
57 KOG0807 Carbon-nitrogen hydrol 88.1 1.1 2.4E-05 32.9 4.4 71 37-123 183-256 (295)
58 cd07568 ML_beta-AS_like mammal 87.3 6.9 0.00015 29.1 8.6 71 32-118 170-245 (287)
59 PRK15018 1-acyl-sn-glycerol-3- 87.2 3.5 7.5E-05 30.4 6.7 57 21-92 120-176 (245)
60 cd07580 nitrilase_2 Uncharacte 85.9 10 0.00022 27.9 8.7 73 34-117 154-228 (268)
61 PLN00202 beta-ureidopropionase 85.1 7.2 0.00016 31.0 7.9 68 33-116 255-340 (405)
62 cd07583 nitrilase_5 Uncharacte 85.1 7.5 0.00016 28.3 7.6 70 32-118 151-222 (253)
63 TIGR03381 agmatine_aguB N-carb 85.0 12 0.00027 27.5 8.9 75 33-117 159-239 (279)
64 cd07197 nitrilase Nitrilase su 85.0 9.3 0.0002 27.6 8.1 68 33-117 152-221 (253)
65 cd07586 nitrilase_8 Uncharacte 85.0 9.3 0.0002 28.1 8.2 75 34-118 153-229 (269)
66 cd07582 nitrilase_4 Uncharacte 84.8 13 0.00027 28.0 8.9 70 32-117 181-256 (294)
67 cd07570 GAT_Gln-NAD-synth Glut 84.6 10 0.00022 27.7 8.2 69 34-117 156-226 (261)
68 cd07581 nitrilase_3 Uncharacte 82.7 12 0.00026 27.2 7.9 69 32-117 155-223 (255)
69 COG0388 Predicted amidohydrola 82.6 13 0.00027 27.5 8.0 65 37-117 163-230 (274)
70 PLN02798 nitrilase 82.1 13 0.00029 27.7 8.0 70 32-117 171-244 (286)
71 cd07577 Ph0642_like Pyrococcus 81.9 17 0.00036 26.6 8.4 65 33-117 150-220 (259)
72 PLN02504 nitrilase 80.9 13 0.00027 28.9 7.7 66 32-117 194-281 (346)
73 cd07579 nitrilase_1_R2 Second 80.6 12 0.00025 28.0 7.2 84 32-116 144-230 (279)
74 cd07573 CPA N-carbamoylputresc 80.6 21 0.00045 26.4 8.9 78 32-117 159-242 (284)
75 PLN02747 N-carbamolyputrescine 79.7 23 0.00051 26.5 8.8 77 32-118 164-250 (296)
76 TIGR00542 hxl6Piso_put hexulos 78.3 17 0.00038 26.9 7.6 62 23-92 90-151 (279)
77 TIGR00530 AGP_acyltrn 1-acyl-s 78.1 12 0.00027 23.8 6.1 50 28-92 77-126 (130)
78 cd07990 LPLAT_LCLAT1-like Lyso 78.1 7 0.00015 27.4 5.1 28 24-51 86-115 (193)
79 PRK09856 fructoselysine 3-epim 77.7 19 0.00041 26.5 7.6 63 22-92 85-147 (275)
80 PRK10438 C-N hydrolase family 76.5 20 0.00043 26.4 7.3 63 39-118 154-219 (256)
81 PRK13287 amiF formamidase; Pro 74.5 37 0.00081 26.2 8.8 70 32-118 173-244 (333)
82 PRK13210 putative L-xylulose 5 74.4 27 0.00058 25.8 7.7 62 23-92 90-151 (284)
83 PRK13981 NAD synthetase; Provi 71.6 33 0.00072 28.3 8.2 71 32-117 153-225 (540)
84 cd07988 LPLAT_ABO13168-like Ly 71.6 15 0.00032 25.1 5.3 35 40-92 95-129 (163)
85 PRK13209 L-xylulose 5-phosphat 69.2 37 0.00079 25.1 7.4 62 23-92 95-156 (283)
86 cd07564 nitrilases_CHs Nitrila 68.9 39 0.00084 25.4 7.5 71 32-116 165-252 (297)
87 COG1066 Sms Predicted ATP-depe 67.4 28 0.00061 28.0 6.5 37 74-110 197-242 (456)
88 cd00019 AP2Ec AP endonuclease 66.8 31 0.00067 25.5 6.6 62 22-92 80-141 (279)
89 COG1941 FrhG Coenzyme F420-red 66.1 36 0.00078 25.1 6.4 85 6-98 1-89 (247)
90 cd07578 nitrilase_1_R1 First n 66.0 49 0.0011 24.1 7.7 67 32-117 154-222 (258)
91 PF14488 DUF4434: Domain of un 65.7 42 0.0009 23.2 6.9 69 26-96 19-87 (166)
92 PF02630 SCO1-SenC: SCO1/SenC; 63.3 20 0.00044 24.7 4.7 98 19-120 65-172 (174)
93 cd07574 nitrilase_Rim1_like Un 62.8 60 0.0013 24.0 7.6 64 33-112 162-231 (280)
94 cd07993 LPLAT_DHAPAT-like Lyso 62.7 44 0.00096 23.6 6.5 26 27-52 88-113 (205)
95 PF13342 Toprim_Crpt: C-termin 62.6 27 0.00058 19.9 4.3 40 76-116 18-57 (62)
96 PF01261 AP_endonuc_2: Xylose 61.3 51 0.0011 22.7 7.1 64 23-92 67-130 (213)
97 cd07986 LPLAT_ACT14924-like Ly 60.8 29 0.00063 24.6 5.3 59 24-92 83-141 (210)
98 COG1225 Bcp Peroxiredoxin [Pos 60.3 22 0.00049 24.4 4.3 85 40-124 32-141 (157)
99 cd07571 ALP_N-acyl_transferase 59.9 68 0.0015 23.7 7.5 67 32-118 168-234 (270)
100 smart00563 PlsC Phosphate acyl 59.6 19 0.00042 22.2 3.8 28 24-52 60-87 (118)
101 PF01553 Acyltransferase: Acyl 58.5 18 0.00039 23.0 3.6 25 27-51 78-102 (132)
102 PF08821 CGGC: CGGC domain; I 57.6 47 0.001 21.1 5.7 54 27-94 52-106 (107)
103 cd01822 Lysophospholipase_L1_l 56.2 57 0.0012 21.8 6.0 58 21-91 82-139 (177)
104 KOG0806 Carbon-nitrogen hydrol 56.1 14 0.0003 28.2 2.9 42 84-126 110-151 (298)
105 COG1120 FepC ABC-type cobalami 54.8 33 0.00072 25.6 4.7 74 28-116 144-218 (258)
106 PLN02901 1-acyl-sn-glycerol-3- 53.5 69 0.0015 22.8 6.2 53 24-92 107-159 (214)
107 TIGR03569 NeuB_NnaB N-acetylne 53.3 70 0.0015 24.8 6.5 75 20-96 9-98 (329)
108 smart00481 POLIIIAc DNA polyme 52.8 40 0.00087 18.9 5.5 47 28-95 16-62 (67)
109 COG1134 TagH ABC-type polysacc 52.5 19 0.00041 26.7 3.1 65 37-116 162-226 (249)
110 PF05621 TniB: Bacterial TniB 52.0 1E+02 0.0022 23.7 7.0 98 8-127 95-213 (302)
111 COG1135 AbcC ABC-type metal io 51.9 28 0.00061 26.9 4.0 71 32-117 151-222 (339)
112 cd00950 DHDPS Dihydrodipicolin 51.5 42 0.00092 25.0 5.0 52 24-92 79-131 (284)
113 cd07992 LPLAT_AAK14816-like Ly 51.0 24 0.00052 24.8 3.5 25 28-52 98-122 (203)
114 COG1131 CcmA ABC-type multidru 49.8 63 0.0014 24.4 5.7 67 36-117 150-217 (293)
115 cd01821 Rhamnogalacturan_acety 49.7 84 0.0018 21.7 6.8 63 21-91 88-150 (198)
116 PRK07534 methionine synthase I 49.5 1.2E+02 0.0027 23.5 7.5 27 22-48 126-152 (336)
117 COG2100 Predicted Fe-S oxidore 49.3 52 0.0011 25.7 5.1 32 23-55 238-269 (414)
118 cd00465 URO-D_CIMS_like The UR 49.2 1.1E+02 0.0024 22.9 7.2 27 28-54 145-171 (306)
119 PTZ00261 acyltransferase; Prov 49.1 30 0.00064 27.1 3.9 52 26-91 201-252 (355)
120 PF09391 DUF2000: Protein of u 48.8 20 0.00043 23.8 2.6 41 11-52 49-89 (133)
121 cd03465 URO-D_like The URO-D _ 48.8 1.2E+02 0.0025 23.0 7.2 52 30-88 171-222 (330)
122 PF13788 DUF4180: Domain of un 48.3 73 0.0016 20.6 6.7 44 7-52 4-47 (113)
123 CHL00200 trpA tryptophan synth 48.1 64 0.0014 24.1 5.4 42 29-92 108-149 (263)
124 COG0708 XthA Exonuclease III [ 48.1 24 0.00053 26.3 3.2 23 27-49 13-35 (261)
125 PF10566 Glyco_hydro_97: Glyco 48.1 99 0.0021 23.3 6.4 63 24-92 29-91 (273)
126 PRK09997 hydroxypyruvate isome 47.6 1.1E+02 0.0024 22.3 7.9 62 22-92 80-142 (258)
127 TIGR03234 OH-pyruv-isom hydrox 47.2 1.1E+02 0.0023 22.2 7.7 60 24-92 81-141 (254)
128 PF10042 DUF2278: Uncharacteri 46.8 32 0.0007 24.7 3.5 32 22-53 117-148 (206)
129 cd02968 SCO SCO (an acronym fo 46.5 22 0.00048 23.0 2.6 41 79-120 98-141 (142)
130 TIGR00674 dapA dihydrodipicoli 46.5 60 0.0013 24.3 5.2 55 24-95 77-133 (285)
131 KOG2792 Putative cytochrome C 46.2 44 0.00094 25.1 4.1 100 22-123 155-262 (280)
132 COG2089 SpsE Sialic acid synth 46.0 1.3E+02 0.0028 23.4 6.7 73 21-95 24-111 (347)
133 cd07945 DRE_TIM_CMS Leptospira 45.0 1.2E+02 0.0026 22.9 6.5 35 20-54 108-142 (280)
134 cd06168 LSm9 The eukaryotic Sm 45.0 20 0.00043 21.2 1.9 16 145-160 14-31 (75)
135 cd07254 Glo_EDI_BRP_like_20 Th 45.0 74 0.0016 19.7 5.7 48 74-121 70-117 (120)
136 PF10087 DUF2325: Uncharacteri 44.9 56 0.0012 20.0 4.1 21 73-93 61-81 (97)
137 cd07388 MPP_Tt1561 Thermus the 44.7 32 0.0007 25.0 3.3 27 20-46 11-37 (224)
138 cd07569 DCase N-carbamyl-D-ami 44.2 1.4E+02 0.0029 22.5 8.1 39 79-117 219-259 (302)
139 COG1365 Predicted ATPase (PP-l 43.7 24 0.00053 25.7 2.5 64 32-95 146-211 (255)
140 cd00952 CHBPH_aldolase Trans-o 43.2 75 0.0016 24.2 5.3 52 24-92 87-140 (309)
141 PF00701 DHDPS: Dihydrodipicol 42.2 88 0.0019 23.4 5.5 54 25-95 81-136 (289)
142 COG0566 SpoU rRNA methylases [ 42.1 96 0.0021 23.1 5.6 86 28-114 122-215 (260)
143 PLN02591 tryptophan synthase 42.1 1.1E+02 0.0024 22.7 5.9 19 74-92 118-136 (250)
144 PRK03892 ribonuclease P protei 41.8 93 0.002 22.6 5.1 43 32-93 94-136 (216)
145 cd07991 LPLAT_LPCAT1-like Lyso 41.7 40 0.00086 23.9 3.4 14 39-52 96-109 (211)
146 PRK14014 putative acyltransfer 41.7 39 0.00084 25.7 3.5 26 26-51 160-185 (301)
147 COG4175 ProV ABC-type proline/ 41.6 85 0.0018 24.6 5.2 67 36-117 178-245 (386)
148 PLN02833 glycerol acyltransfer 41.6 59 0.0013 25.7 4.6 26 27-52 222-249 (376)
149 PF01081 Aldolase: KDPG and KH 41.3 71 0.0015 22.8 4.6 21 77-97 91-111 (196)
150 cd06556 ICL_KPHMT Members of t 40.7 61 0.0013 23.9 4.3 56 26-106 155-211 (240)
151 cd07266 HPCD_N_class_II N-term 40.4 89 0.0019 19.3 4.8 46 74-120 72-117 (121)
152 TIGR00262 trpA tryptophan synt 39.2 1.2E+02 0.0026 22.5 5.7 16 75-90 128-143 (256)
153 PRK13111 trpA tryptophan synth 39.2 1.2E+02 0.0026 22.6 5.7 19 74-92 129-147 (258)
154 PRK03170 dihydrodipicolinate s 39.2 94 0.002 23.3 5.3 52 24-92 80-132 (292)
155 KOG3446 NADH:ubiquinone oxidor 39.1 55 0.0012 20.0 3.1 42 6-50 15-58 (97)
156 cd04501 SGNH_hydrolase_like_4 39.0 1.2E+02 0.0026 20.5 6.9 77 10-91 61-142 (183)
157 COG1121 ZnuC ABC-type Mn/Zn tr 39.0 1.1E+02 0.0023 22.9 5.3 64 32-110 149-213 (254)
158 cd06551 LPLAT Lysophospholipid 38.1 1.1E+02 0.0023 20.8 5.1 55 27-96 88-143 (187)
159 smart00642 Aamy Alpha-amylase 38.1 1.3E+02 0.0028 20.6 6.9 68 26-97 18-93 (166)
160 PRK08633 2-acyl-glycerophospho 37.5 1E+02 0.0023 27.6 6.0 48 30-92 501-548 (1146)
161 PF02569 Pantoate_ligase: Pant 37.4 19 0.00042 27.2 1.3 35 14-48 60-94 (280)
162 PRK11629 lolD lipoprotein tran 37.2 1.4E+02 0.0031 21.3 5.8 44 74-119 183-227 (233)
163 cd00717 URO-D Uroporphyrinogen 37.0 1.9E+02 0.0041 22.1 6.8 48 30-86 180-227 (335)
164 cd01832 SGNH_hydrolase_like_1 36.9 1.3E+02 0.0029 20.2 7.2 64 21-91 86-149 (185)
165 PRK12677 xylose isomerase; Pro 36.7 2.1E+02 0.0046 22.6 8.9 25 23-47 110-135 (384)
166 PF02844 GARS_N: Phosphoribosy 36.6 30 0.00066 21.8 1.9 27 25-51 47-74 (100)
167 PF03481 SUA5: Putative GTP-bi 36.4 1.1E+02 0.0023 19.8 4.6 30 19-48 77-106 (125)
168 cd00984 DnaB_C DnaB helicase C 36.1 1.5E+02 0.0033 21.1 5.8 62 26-94 108-170 (242)
169 cd03293 ABC_NrtD_SsuB_transpor 36.0 1.6E+02 0.0034 20.8 6.2 45 74-118 169-215 (220)
170 KOG2848 1-acyl-sn-glycerol-3-p 35.6 72 0.0016 23.9 3.9 31 21-51 144-174 (276)
171 PF01208 URO-D: Uroporphyrinog 35.6 1.6E+02 0.0036 22.4 6.2 53 27-88 182-234 (343)
172 KOG0923 mRNA splicing factor A 35.1 1.5E+02 0.0032 25.8 5.9 31 22-52 486-516 (902)
173 PRK09453 phosphodiesterase; Pr 35.0 63 0.0014 22.2 3.5 26 21-46 8-33 (182)
174 KOG1505 Lysophosphatidic acid 35.0 59 0.0013 25.4 3.6 26 24-50 136-161 (346)
175 TIGR00256 D-tyrosyl-tRNA(Tyr) 34.8 48 0.001 22.4 2.7 60 36-95 66-125 (145)
176 cd08362 BphC5-RrK37_N_like N-t 34.8 1.1E+02 0.0024 18.7 5.6 45 74-119 70-115 (120)
177 PLN02380 1-acyl-sn-glycerol-3- 34.5 98 0.0021 24.5 4.8 25 27-51 149-175 (376)
178 COG0159 TrpA Tryptophan syntha 34.5 1.5E+02 0.0032 22.4 5.4 19 74-92 134-152 (265)
179 PLN02510 probable 1-acyl-sn-gl 34.3 82 0.0018 24.9 4.3 12 40-51 172-183 (374)
180 COG4586 ABC-type uncharacteriz 34.3 1.7E+02 0.0037 22.5 5.7 74 28-116 162-236 (325)
181 COG0204 PlsC 1-acyl-sn-glycero 34.2 55 0.0012 23.5 3.3 26 27-52 125-150 (255)
182 cd00954 NAL N-Acetylneuraminic 33.4 1.4E+02 0.0031 22.3 5.4 52 24-92 80-133 (288)
183 KOG3406 40S ribosomal protein 33.3 1.5E+02 0.0031 19.7 4.9 34 39-92 49-82 (134)
184 TIGR00633 xth exodeoxyribonucl 32.8 31 0.00068 24.8 1.8 20 33-52 20-39 (255)
185 PF02126 PTE: Phosphotriestera 32.6 1.8E+02 0.0039 22.3 5.8 52 22-93 33-84 (308)
186 PF06838 Met_gamma_lyase: Meth 32.6 73 0.0016 25.3 3.7 41 8-48 154-196 (403)
187 PRK09437 bcp thioredoxin-depen 32.5 76 0.0016 21.0 3.5 26 22-47 46-71 (154)
188 cd04724 Tryptophan_synthase_al 32.5 1.8E+02 0.0039 21.2 5.7 17 75-91 117-133 (242)
189 cd07983 LPLAT_DUF374-like Lyso 32.4 1.3E+02 0.0029 20.6 4.8 40 38-95 95-134 (189)
190 PRK10528 multifunctional acyl- 32.1 1.6E+02 0.0036 20.3 5.3 58 21-91 89-146 (191)
191 TIGR02314 ABC_MetN D-methionin 32.1 1E+02 0.0022 23.9 4.5 64 38-116 156-220 (343)
192 PRK06015 keto-hydroxyglutarate 31.9 95 0.0021 22.2 4.0 40 32-97 68-107 (201)
193 cd03297 ABC_ModC_molybdenum_tr 31.6 1.5E+02 0.0034 20.7 5.2 42 74-116 169-211 (214)
194 cd00408 DHDPS-like Dihydrodipi 31.5 1.3E+02 0.0028 22.3 4.9 51 25-92 77-128 (281)
195 PRK07695 transcriptional regul 31.4 1.8E+02 0.004 20.3 5.8 20 33-52 108-127 (201)
196 TIGR01182 eda Entner-Doudoroff 31.3 1E+02 0.0022 22.1 4.1 40 32-97 72-111 (204)
197 COG1929 Glycerate kinase [Carb 31.1 1.3E+02 0.0029 23.7 4.9 54 27-95 270-326 (378)
198 TIGR01825 gly_Cac_T_rel pyrido 31.0 1.5E+02 0.0033 22.8 5.4 17 76-92 182-198 (385)
199 cd01828 sialate_O-acetylestera 31.0 1.6E+02 0.0035 19.5 5.7 61 21-91 66-128 (169)
200 cd07491 Peptidases_S8_7 Peptid 30.9 2.1E+02 0.0046 20.9 6.4 57 25-94 87-143 (247)
201 COG5225 RRS1 Uncharacterized p 30.9 1.7E+02 0.0037 19.7 5.3 54 24-88 46-102 (172)
202 TIGR03586 PseI pseudaminic aci 30.8 1.6E+02 0.0035 22.8 5.3 74 21-96 11-99 (327)
203 PRK00115 hemE uroporphyrinogen 30.8 2.5E+02 0.0054 21.6 6.7 48 30-86 189-236 (346)
204 cd00340 GSH_Peroxidase Glutath 30.7 59 0.0013 21.6 2.7 16 105-120 125-140 (152)
205 PTZ00253 tryparedoxin peroxida 30.3 1.4E+02 0.003 21.0 4.7 32 80-117 110-141 (199)
206 PRK11756 exonuclease III; Prov 30.2 61 0.0013 23.8 2.9 26 23-51 12-37 (268)
207 PF02283 CobU: Cobinamide kina 30.1 1.6E+02 0.0035 20.2 4.8 31 25-55 99-130 (167)
208 cd02072 Glm_B12_BD B12 binding 30.0 1.7E+02 0.0036 19.3 6.1 23 29-51 39-61 (128)
209 COG1712 Predicted dinucleotide 29.9 2.3E+02 0.0051 21.0 5.7 47 26-91 70-116 (255)
210 COG1603 RPP1 RNase P/RNase MRP 29.8 1.7E+02 0.0038 21.5 5.0 21 31-51 88-109 (229)
211 PRK05273 D-tyrosyl-tRNA(Tyr) d 29.8 73 0.0016 21.6 2.9 60 36-95 66-125 (147)
212 cd05562 Peptidases_S53_like Pe 29.5 2.4E+02 0.0052 21.0 6.9 54 26-93 76-129 (275)
213 PF00290 Trp_syntA: Tryptophan 29.3 1.4E+02 0.0031 22.3 4.7 41 30-92 105-145 (259)
214 cd07409 MPP_CD73_N CD73 ecto-5 29.3 74 0.0016 23.8 3.3 21 26-46 168-188 (281)
215 cd06557 KPHMT-like Ketopantoat 29.3 1.6E+02 0.0035 21.9 5.0 56 26-106 157-213 (254)
216 PRK10342 glycerate kinase I; P 29.2 1.1E+02 0.0023 24.4 4.2 44 39-97 283-328 (381)
217 COG2514 Predicted ring-cleavag 28.9 97 0.0021 23.3 3.7 53 65-122 74-127 (265)
218 PRK09982 universal stress prot 28.8 63 0.0014 21.1 2.6 17 32-48 95-111 (142)
219 PRK13634 cbiO cobalt transport 28.7 1.5E+02 0.0033 22.2 4.9 42 74-116 183-225 (290)
220 PRK01372 ddl D-alanine--D-alan 28.6 1.2E+02 0.0025 22.7 4.3 16 6-21 2-17 (304)
221 COG4598 HisP ABC-type histidin 28.5 1.4E+02 0.003 21.6 4.2 69 32-115 162-230 (256)
222 TIGR02211 LolD_lipo_ex lipopro 28.1 2E+02 0.0043 20.2 5.3 40 74-115 179-219 (221)
223 TIGR00045 glycerate kinase. Th 28.1 1.5E+02 0.0032 23.5 4.8 45 39-98 282-328 (375)
224 KOG0898 40S ribosomal protein 28.0 54 0.0012 21.9 2.0 8 42-49 89-96 (152)
225 TIGR02540 gpx7 putative glutat 27.8 68 0.0015 21.3 2.6 29 20-48 35-63 (153)
226 PRK09485 mmuM homocysteine met 27.8 2.7E+02 0.006 21.1 7.1 27 22-48 135-161 (304)
227 PF12791 RsgI_N: Anti-sigma fa 27.6 75 0.0016 17.2 2.4 19 104-122 6-24 (56)
228 PF08423 Rad51: Rad51; InterP 27.5 1.2E+02 0.0025 22.5 4.0 69 22-93 115-184 (256)
229 TIGR01184 ntrCD nitrate transp 27.5 2.2E+02 0.0047 20.4 5.4 63 39-116 131-194 (230)
230 COG1126 GlnQ ABC-type polar am 27.4 84 0.0018 23.1 3.1 79 32-125 146-224 (240)
231 PRK07114 keto-hydroxyglutarate 27.4 1.3E+02 0.0028 22.0 4.1 21 77-97 102-122 (222)
232 COG1435 Tdk Thymidine kinase [ 27.3 1.9E+02 0.0041 20.8 4.8 59 26-103 67-127 (201)
233 cd07261 Glo_EDI_BRP_like_11 Th 27.2 1.5E+02 0.0033 17.9 5.6 43 74-119 71-113 (114)
234 COG2048 HdrB Heterodisulfide r 27.0 1.2E+02 0.0025 23.3 3.9 29 20-48 202-230 (293)
235 cd02646 R3H_G-patch R3H domain 27.0 1.2E+02 0.0026 16.7 4.7 41 27-89 2-42 (58)
236 PF10649 DUF2478: Protein of u 26.9 2.1E+02 0.0045 19.7 4.8 56 25-97 78-133 (159)
237 PRK10247 putative ABC transpor 26.8 2E+02 0.0044 20.4 5.1 41 74-114 175-215 (225)
238 PLN02361 alpha-amylase 26.7 3.4E+02 0.0073 21.8 7.1 68 24-95 26-97 (401)
239 cd02971 PRX_family Peroxiredox 26.6 1.8E+02 0.0038 18.5 4.6 21 101-121 108-128 (140)
240 COG3638 ABC-type phosphate/pho 26.6 1.4E+02 0.003 22.3 4.1 70 32-116 157-227 (258)
241 PRK06552 keto-hydroxyglutarate 26.4 1.3E+02 0.0028 21.7 4.0 21 77-97 99-119 (213)
242 cd03216 ABC_Carb_Monos_I This 26.3 1.7E+02 0.0036 19.7 4.4 66 35-116 95-161 (163)
243 PF12340 DUF3638: Protein of u 26.2 1.6E+02 0.0034 21.6 4.4 43 10-52 100-143 (229)
244 PF00586 AIRS: AIR synthase re 26.1 93 0.002 18.8 2.8 21 74-94 75-95 (96)
245 PRK11340 phosphodiesterase Yae 26.0 1.6E+02 0.0034 21.9 4.5 24 26-49 66-89 (271)
246 TIGR03128 RuMP_HxlA 3-hexulose 25.9 2.3E+02 0.0051 19.7 5.4 41 33-94 69-109 (206)
247 PRK08043 bifunctional acyl-[ac 25.9 1.5E+02 0.0032 25.3 4.8 47 29-91 87-133 (718)
248 PF12681 Glyoxalase_2: Glyoxal 25.7 1.5E+02 0.0034 17.6 6.0 43 74-118 65-107 (108)
249 PRK13640 cbiO cobalt transport 25.4 2.5E+02 0.0053 20.9 5.5 63 39-116 160-222 (282)
250 COG2805 PilT Tfp pilus assembl 25.3 95 0.0021 24.1 3.2 23 27-49 185-207 (353)
251 PF11305 DUF3107: Protein of u 25.2 1.2E+02 0.0027 17.9 3.0 32 9-40 3-36 (74)
252 cd03298 ABC_ThiQ_thiamine_tran 24.9 2.5E+02 0.0054 19.6 5.5 42 74-116 166-208 (211)
253 PF01784 NIF3: NIF3 (NGG1p int 24.8 1.8E+02 0.0039 21.2 4.6 22 30-51 43-64 (241)
254 COG4100 Cystathionine beta-lya 24.7 1.3E+02 0.0029 23.3 3.8 46 5-50 162-209 (416)
255 PF03372 Exo_endo_phos: Endonu 24.6 65 0.0014 22.3 2.2 21 31-51 20-40 (249)
256 cd03257 ABC_NikE_OppD_transpor 24.5 2.5E+02 0.0054 19.8 5.2 42 74-116 183-225 (228)
257 PRK09932 glycerate kinase II; 24.5 2.3E+02 0.005 22.6 5.3 44 39-97 283-328 (381)
258 cd00840 MPP_Mre11_N Mre11 nucl 24.4 1.3E+02 0.0028 21.0 3.7 26 22-47 23-48 (223)
259 cd07241 Glo_EDI_BRP_like_3 Thi 24.3 1.8E+02 0.0038 17.8 5.7 42 74-117 82-123 (125)
260 PRK13477 bifunctional pantoate 24.3 48 0.001 27.4 1.6 35 14-48 58-92 (512)
261 TIGR01464 hemE uroporphyrinoge 24.3 3.3E+02 0.0071 20.8 6.8 48 30-86 183-230 (338)
262 PF09895 DUF2122: RecB-family 24.2 86 0.0019 20.0 2.4 19 31-49 10-28 (106)
263 COG2144 Selenophosphate synthe 24.1 1.2E+02 0.0025 23.4 3.4 30 74-105 111-140 (324)
264 TIGR02631 xylA_Arthro xylose i 23.9 3.7E+02 0.008 21.3 7.6 64 23-92 111-178 (382)
265 PRK14072 6-phosphofructokinase 23.8 1.7E+02 0.0037 23.5 4.6 12 39-50 208-219 (416)
266 PRK13911 exodeoxyribonuclease 23.8 47 0.001 24.5 1.3 21 32-52 19-39 (250)
267 cd03258 ABC_MetN_methionine_tr 23.7 2.6E+02 0.0057 19.8 5.3 42 74-116 178-220 (233)
268 PRK09894 diguanylate cyclase; 23.6 3E+02 0.0065 20.1 5.7 37 9-45 249-285 (296)
269 PRK10785 maltodextrin glucosid 23.5 3.4E+02 0.0075 22.9 6.4 64 25-92 177-244 (598)
270 cd07476 Peptidases_S8_thiazoli 23.4 3.1E+02 0.0068 20.3 7.3 53 26-93 92-144 (267)
271 PRK15118 universal stress glob 23.4 87 0.0019 20.3 2.5 17 32-48 95-111 (144)
272 PF07611 DUF1574: Protein of u 23.3 3.7E+02 0.0081 21.1 6.1 59 24-91 249-308 (345)
273 cd03256 ABC_PhnC_transporter A 23.2 2.8E+02 0.0062 19.7 5.5 42 74-116 182-224 (241)
274 PRK13633 cobalt transporter AT 23.2 3E+02 0.0066 20.4 5.6 42 74-116 182-223 (280)
275 PF02449 Glyco_hydro_42: Beta- 23.2 1.8E+02 0.0039 22.7 4.5 60 27-96 10-69 (374)
276 PRK06830 diphosphate--fructose 23.2 3.1E+02 0.0068 22.3 5.9 12 40-51 272-283 (443)
277 TIGR00195 exoDNase_III exodeox 23.1 81 0.0017 22.9 2.5 20 32-51 18-37 (254)
278 COG0800 Eda 2-keto-3-deoxy-6-p 23.1 82 0.0018 22.8 2.4 39 32-96 77-115 (211)
279 TIGR03864 PQQ_ABC_ATP ABC tran 23.0 2.9E+02 0.0062 19.7 6.4 63 39-116 149-211 (236)
280 COG0001 HemL Glutamate-1-semia 23.0 1.8E+02 0.004 23.6 4.5 53 26-92 187-239 (432)
281 COG0414 PanC Panthothenate syn 23.0 64 0.0014 24.4 1.9 84 13-96 59-177 (285)
282 PRK10851 sulfate/thiosulfate t 22.9 3.7E+02 0.008 20.9 6.8 65 37-116 151-216 (353)
283 TIGR02982 heterocyst_DevA ABC 22.9 2.7E+02 0.0058 19.7 5.1 62 37-114 156-218 (220)
284 PF07302 AroM: AroM protein; 22.8 1.2E+02 0.0025 22.2 3.1 23 26-48 164-186 (221)
285 TIGR01822 2am3keto_CoA 2-amino 22.8 2.8E+02 0.006 21.4 5.6 17 76-92 189-205 (393)
286 PRK10584 putative ABC transpor 22.8 2.8E+02 0.0062 19.6 5.4 41 74-116 184-225 (228)
287 PRK00311 panB 3-methyl-2-oxobu 22.8 2.9E+02 0.0064 20.7 5.3 59 26-109 160-219 (264)
288 PF13167 GTP-bdg_N: GTP-bindin 22.7 1.2E+02 0.0026 18.9 2.8 23 27-49 44-66 (95)
289 TIGR00640 acid_CoA_mut_C methy 22.7 2.4E+02 0.0051 18.6 5.0 20 30-49 43-62 (132)
290 cd03255 ABC_MJ0796_Lo1CDE_FtsE 22.6 2.8E+02 0.0061 19.4 5.4 39 74-114 178-217 (218)
291 TIGR01463 mtaA_cmuA methyltran 22.6 3.6E+02 0.0077 20.6 7.5 23 29-51 182-204 (340)
292 PRK04147 N-acetylneuraminate l 22.4 2.7E+02 0.0058 20.9 5.2 53 24-92 83-135 (293)
293 cd03012 TlpA_like_DipZ_like Tl 22.3 2.2E+02 0.0047 18.0 7.0 79 21-118 37-121 (126)
294 cd00613 GDC-P Glycine cleavage 22.3 2.5E+02 0.0053 21.8 5.2 19 74-92 176-194 (398)
295 PF09818 ABC_ATPase: Predicted 22.2 3.9E+02 0.0084 21.9 6.1 58 32-91 332-392 (448)
296 cd01409 SIRT4 SIRT4: Eukaryoti 22.2 1.6E+02 0.0034 21.9 3.8 22 75-96 194-215 (260)
297 PF02595 Gly_kinase: Glycerate 22.1 54 0.0012 25.9 1.4 50 39-103 283-334 (377)
298 cd07265 2_3_CTD_N N-terminal d 22.0 2.1E+02 0.0045 17.7 5.6 46 74-120 73-118 (122)
299 PLN00125 Succinyl-CoA ligase [ 22.0 3.7E+02 0.008 20.6 6.1 47 27-93 80-127 (300)
300 PLN02489 homocysteine S-methyl 22.0 3.8E+02 0.0083 20.8 7.4 27 22-48 162-188 (335)
301 PRK13650 cbiO cobalt transport 21.9 2.9E+02 0.0062 20.5 5.3 63 39-116 157-219 (279)
302 cd00563 Dtyr_deacylase D-Tyros 21.8 1.1E+02 0.0024 20.7 2.7 58 36-93 66-123 (145)
303 cd03266 ABC_NatA_sodium_export 21.7 2.7E+02 0.0059 19.5 5.0 62 39-116 153-215 (218)
304 COG2129 Predicted phosphoester 21.7 1.8E+02 0.0039 21.3 3.9 27 21-47 11-37 (226)
305 cd07412 MPP_YhcR_N Bacillus su 21.5 1.3E+02 0.0027 22.6 3.3 23 24-46 175-197 (288)
306 PF14582 Metallophos_3: Metall 21.5 74 0.0016 23.6 1.9 28 21-48 13-40 (255)
307 cd03265 ABC_DrrA DrrA is the A 21.5 3E+02 0.0065 19.4 5.3 42 74-116 169-211 (220)
308 PRK10933 trehalose-6-phosphate 21.4 4.9E+02 0.011 21.8 6.9 67 24-94 30-101 (551)
309 PF04898 Glu_syn_central: Glut 21.2 2E+02 0.0044 21.9 4.2 31 20-50 135-165 (287)
310 TIGR00111 pelota probable tran 21.2 1.2E+02 0.0027 23.6 3.2 27 27-53 308-334 (351)
311 KOG0342 ATP-dependent RNA heli 21.1 49 0.0011 27.2 1.0 38 12-49 401-438 (543)
312 PRK13635 cbiO cobalt transport 21.0 3.4E+02 0.0073 20.2 5.5 62 39-116 157-219 (279)
313 TIGR03395 sphingomy sphingomye 21.0 1.8E+02 0.0038 21.9 4.0 15 37-51 33-47 (283)
314 KOG2178 Predicted sugar kinase 21.0 4.5E+02 0.0097 21.2 6.4 78 23-116 105-182 (409)
315 TIGR00067 glut_race glutamate 21.0 2.1E+02 0.0045 21.1 4.3 33 20-52 40-73 (251)
316 COG1082 IolE Sugar phosphate i 20.9 3.3E+02 0.0072 19.7 7.4 65 23-93 80-145 (274)
317 PRK00062 glutamate-1-semialdeh 20.9 2.3E+02 0.0049 22.6 4.8 20 73-92 217-236 (426)
318 cd03226 ABC_cobalt_CbiO_domain 20.9 2E+02 0.0044 20.0 4.1 40 74-115 164-204 (205)
319 cd02966 TlpA_like_family TlpA- 20.9 1.2E+02 0.0025 18.1 2.6 18 102-119 97-114 (116)
320 smart00518 AP2Ec AP endonuclea 20.8 3.4E+02 0.0074 19.8 7.4 24 23-46 80-103 (273)
321 cd07941 DRE_TIM_LeuA3 Desulfob 20.8 3.6E+02 0.0079 20.1 6.4 31 20-50 112-142 (273)
322 COG3845 ABC-type uncharacteriz 20.7 1.4E+02 0.003 24.6 3.4 68 39-121 157-224 (501)
323 PRK11701 phnK phosphonate C-P 20.7 3.2E+02 0.0069 19.8 5.2 42 74-116 189-231 (258)
324 TIGR00713 hemL glutamate-1-sem 20.6 2.4E+02 0.0052 22.2 4.9 20 73-92 215-234 (423)
325 PLN02412 probable glutathione 20.6 1.1E+02 0.0024 20.8 2.6 27 22-48 44-70 (167)
326 TIGR00068 glyox_I lactoylgluta 20.6 2.6E+02 0.0056 18.2 5.6 44 76-120 97-140 (150)
327 cd03260 ABC_PstB_phosphate_tra 20.5 2.9E+02 0.0063 19.5 4.9 41 74-116 179-219 (227)
328 TIGR02483 PFK_mixed phosphofru 20.5 2.3E+02 0.005 21.9 4.5 11 39-49 185-195 (324)
329 cd03219 ABC_Mj1267_LivG_branch 20.4 2.7E+02 0.0059 19.8 4.8 41 74-116 181-222 (236)
330 COG0622 Predicted phosphoester 20.4 2E+02 0.0043 20.0 3.8 41 74-115 96-137 (172)
331 cd08344 MhqB_like_N N-terminal 20.4 2.2E+02 0.0047 17.3 5.4 42 74-119 66-107 (112)
332 TIGR00222 panB 3-methyl-2-oxob 20.3 3.5E+02 0.0077 20.3 5.3 60 25-109 158-218 (263)
333 PTZ00256 glutathione peroxidas 20.3 1.2E+02 0.0026 21.0 2.7 28 20-47 54-81 (183)
334 KOG0062 ATPase component of AB 20.3 3.6E+02 0.0077 22.7 5.6 42 32-91 208-249 (582)
335 PF03437 BtpA: BtpA family; I 20.2 3.8E+02 0.0082 20.0 6.1 48 8-55 3-57 (254)
336 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 20.2 2.5E+02 0.0054 20.0 4.5 62 39-116 159-221 (224)
337 PF07282 OrfB_Zn_ribbon: Putat 20.2 1.6E+02 0.0035 16.5 2.9 24 28-51 3-27 (69)
338 PRK10908 cell division protein 20.1 2.6E+02 0.0055 19.8 4.5 41 74-116 175-216 (222)
339 PTZ00409 Sir2 (Silent Informat 20.1 1.9E+02 0.004 21.8 3.9 23 74-96 188-210 (271)
340 cd01717 Sm_B The eukaryotic Sm 20.0 99 0.0021 18.3 2.0 15 146-160 15-31 (79)
No 1
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=4.5e-36 Score=223.20 Aligned_cols=152 Identities=68% Similarity=1.138 Sum_probs=134.3
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (160)
Q Consensus 9 ~~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (160)
||||++|+++..|++.|++++.+++++|+++++|||||||++++||.+.+....+.+.+++...+..++.++++|+++++
T Consensus 1 ~~ia~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i 80 (279)
T TIGR03381 1 VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGV 80 (279)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCc
Confidence 68999999988899999999999999999999999999999999997655433445555554446789999999999999
Q ss_pred EEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 89 ~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
+|++|+++++++++||++++++++|+++..|+|+||+..+.+.|..+|++|+..+.+|+++++|+|++||||
T Consensus 81 ~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~~G~~~~~~f~~~~~~ig~~IC~D 152 (279)
T TIGR03381 81 VIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTGFKVWDTRYGRIGVGICWD 152 (279)
T ss_pred EEEEeeeecCCCceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEccCCCCCceEecCCceEEEEEEcC
Confidence 999999988888999999999999999999999999876566788899999854789999999999999998
No 2
>PLN02747 N-carbamolyputrescine amidase
Probab=100.00 E-value=3.4e-35 Score=220.26 Aligned_cols=157 Identities=83% Similarity=1.321 Sum_probs=136.6
Q ss_pred CCCcccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHH
Q 031422 4 GKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83 (160)
Q Consensus 4 ~~~~~~~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 83 (160)
+|.+++|||++|+++..|++.|++++.+++++|++.|+|||||||++++||.+.....++.+.++....+..++.++++|
T Consensus 2 ~~~~~~~va~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 81 (296)
T PLN02747 2 GMGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLA 81 (296)
T ss_pred CCCcceEEEEEEecCCCCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHH
Confidence 46678999999999878999999999999999999999999999999999876533334555555443357889999999
Q ss_pred HHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 84 ~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
++++++|++|.+++.++++||++++++++|+++.+|+|.||+..+.+.|..+|.+|+..+++|+++++|+|++||||
T Consensus 82 ~~~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~~~~G~~~~~~~~~~~~rig~~IC~D 158 (296)
T PLN02747 82 KELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFDTKFAKIGVAICWD 158 (296)
T ss_pred HHcCeEEEeeeeecCCCceEEEEEEECCCCCCcceEEEEecCCCCCccceeeecCCCCCCeeEEcCCccEEEEEEcc
Confidence 99999999999888888999999999999999999999999876566788889999744689999999999999998
No 3
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=1.1e-34 Score=216.60 Aligned_cols=154 Identities=38% Similarity=0.666 Sum_probs=132.8
Q ss_pred cccEEEEEeCCCC--------CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHH
Q 031422 7 REVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK 78 (160)
Q Consensus 7 ~~~~va~~Q~~~~--------~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (160)
+++|||++|+++. .+.+.|++++.+++++|+++|+|||||||++++||.+.+....+.+.++...+++.++.
T Consensus 2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (287)
T cd07568 2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKR 81 (287)
T ss_pred ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHH
Confidence 5799999999974 78899999999999999999999999999999998654322234444554334678999
Q ss_pred HHHHHHHcCcEEEecccccc-CCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEe
Q 031422 79 MQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGK 157 (160)
Q Consensus 79 l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~I 157 (160)
|+++|+++++++++|+.++. ++++||++++|+++|+++.+|+|+||++.+.+.|..+|.+|+..+.+|+++++|+|++|
T Consensus 82 l~~~a~~~~i~ii~g~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~f~~G~~~~~~f~~~~~~iG~~I 161 (287)
T cd07568 82 FAALAKEYNMVLILPIYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGNLGYPVFDTAFGKIGVYI 161 (287)
T ss_pred HHHHHHHCCEEEEEEeEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCCccceeeeecCCCCCCceEEcCCceEEEEE
Confidence 99999999999999988764 57899999999999999999999999988778888899999844689999999999999
Q ss_pred ccC
Q 031422 158 GFY 160 (160)
Q Consensus 158 Cy~ 160 (160)
|||
T Consensus 162 CyD 164 (287)
T cd07568 162 CYD 164 (287)
T ss_pred Eec
Confidence 998
No 4
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=1.4e-34 Score=221.43 Aligned_cols=156 Identities=29% Similarity=0.407 Sum_probs=132.6
Q ss_pred CCcccEEEEEeCCCC--------CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccc-hhhHhhhcccCCCChH
Q 031422 5 KRREVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-REDFFQRAKPYKDHPT 75 (160)
Q Consensus 5 ~~~~~~va~~Q~~~~--------~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~-~~~~~~~~~~~~~~~~ 75 (160)
..+.+|||++|+++. .|.+.|++++.+++++|+++|+|||||||++++||..... ...+.+.+++..+++.
T Consensus 60 ~~~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~ 139 (363)
T cd07587 60 PPRIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPT 139 (363)
T ss_pred CCceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChH
Confidence 345799999999862 4899999999999999999999999999999999853221 1124445554334688
Q ss_pred HHHHHHHHHHcCcEEEecccccc---CCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCee
Q 031422 76 ILKMQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAK 152 (160)
Q Consensus 76 ~~~l~~~a~~~~i~i~~g~~~~~---~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~r 152 (160)
++.|+++|++++++|++|+.+++ ++++||++++|+++|++++.|+|+||+..+.+.|+.+|.+|+..+++|+++++|
T Consensus 140 ~~~l~~lAk~~~i~Iv~gi~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G~~~~~vf~t~~gr 219 (363)
T cd07587 140 TKFCQELAKKYNMVIVSPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGHPVFETQFGK 219 (363)
T ss_pred HHHHHHHHHHcCcEEEEeeeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecCCCCCceEEcCCce
Confidence 99999999999999999988875 368999999999999999999999999877788999999998546899999999
Q ss_pred EEEEeccC
Q 031422 153 IGVGKGFY 160 (160)
Q Consensus 153 ig~~ICy~ 160 (160)
||++||||
T Consensus 220 iG~~ICyD 227 (363)
T cd07587 220 IAVNICYG 227 (363)
T ss_pred EEEEEecc
Confidence 99999998
No 5
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=100.00 E-value=3.6e-33 Score=208.13 Aligned_cols=152 Identities=58% Similarity=0.954 Sum_probs=132.5
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (160)
Q Consensus 9 ~~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (160)
||||++|+++..|++.|++++.+.+++|+++++|||||||++++||.+.+....+.+.+++...+..++.++++|+++++
T Consensus 1 ~~ia~~Q~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i 80 (284)
T cd07573 1 VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGV 80 (284)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCCE
Confidence 68999999998899999999999999999999999999999999997665433445555522346788999999999999
Q ss_pred EEEecccccc-CCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 89 VMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 89 ~i~~g~~~~~-~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
++++|+.++. ++++||++++++++|+++.+|+|.||+..+.+.|..+|.+|+..+.+|+++++|+|++||||
T Consensus 81 ~iv~g~~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D 153 (284)
T cd07573 81 VIPVSLFEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPDDPGYYEKFYFTPGDTGFKVFDTRYGRIGVLICWD 153 (284)
T ss_pred EEEecceeeCCCCcEEEEEEEECCCCCEEeEEeeeccCCCCcccccceecCCCCCCceEecCCceEEEEEecc
Confidence 9999998774 46899999999999999999999999876667788899999833799999999999999998
No 6
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=5.2e-33 Score=215.00 Aligned_cols=154 Identities=27% Similarity=0.434 Sum_probs=131.7
Q ss_pred CcccEEEEEeCCCC--------CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHH
Q 031422 6 RREVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTIL 77 (160)
Q Consensus 6 ~~~~~va~~Q~~~~--------~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 77 (160)
.+++|||++|+++. .+.+.|++++.+++++|+++|+|||||||++++||........+.+.+++. .+...+
T Consensus 84 ~~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~-~g~~~~ 162 (405)
T PLN00202 84 PRVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPV-DGESTK 162 (405)
T ss_pred CCeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhC-CCHHHH
Confidence 56799999999972 479999999999999999999999999999999985321111244555554 368899
Q ss_pred HHHHHHHHcCcEEEecccccc---CCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEE
Q 031422 78 KMQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIG 154 (160)
Q Consensus 78 ~l~~~a~~~~i~i~~g~~~~~---~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig 154 (160)
.++++|++++++|++|+.+++ ++++|||+++++++|+++++|+|+||++.+.+.|+.+|.+|+...++|+++++|+|
T Consensus 163 ~l~~lA~~~~i~Iv~G~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g~~~E~~~f~~G~~g~~vf~t~~gkiG 242 (405)
T PLN00202 163 FLQELARKYNMVIVSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIA 242 (405)
T ss_pred HHHHHHHHCCeEEEEEeeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCCCccccceeecCCCCceEEEeCCCeEE
Confidence 999999999999999987753 35799999999999999999999999988888899999999864689999999999
Q ss_pred EEeccC
Q 031422 155 VGKGFY 160 (160)
Q Consensus 155 ~~ICy~ 160 (160)
++||||
T Consensus 243 v~ICYD 248 (405)
T PLN00202 243 VNICYG 248 (405)
T ss_pred EEEccc
Confidence 999998
No 7
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=100.00 E-value=3.4e-33 Score=196.31 Aligned_cols=150 Identities=33% Similarity=0.459 Sum_probs=127.8
Q ss_pred EEEEEeCCC---CCCHHHHHHHHHHHHHHHHhCCCcEEEecccccccccc----ccchhhHhhhcccCCCChHHHHHHHH
Q 031422 10 VVSALQFAC---TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFC----QAQREDFFQRAKPYKDHPTILKMQEL 82 (160)
Q Consensus 10 ~va~~Q~~~---~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (160)
|||++|+++ ..+.+.|++++.+++++|+++++|||||||++++||.. .....++...+... .+..++.+.++
T Consensus 1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 79 (186)
T PF00795_consen 1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPL-DGPYLERLAEL 79 (186)
T ss_dssp EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHS-TSHHHHHHHHH
T ss_pred CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhcccc-ccHHHHHHHHH
Confidence 799999995 57899999999999999999999999999999999832 33334455555543 26899999999
Q ss_pred HHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcc-cceeecCCCCCceeEEe-----CCeeEEEE
Q 031422 83 AKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ-EKFYFNPGDTGFKVFQT-----KFAKIGVG 156 (160)
Q Consensus 83 a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~-e~~~~~~g~~~~~v~~~-----~~~rig~~ 156 (160)
++++++.+++|+++++++++||++++++++|+++.+|+|+||+|.+.+. |..+|.+|....+++++ +|+|+|++
T Consensus 80 a~~~~~~i~~G~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~~~~P~~~~~~~g~~~~~~~~~~~~~~~g~~ig~~ 159 (186)
T PF00795_consen 80 AKENGITIVAGIPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFGEYIPERRYFSPGGDPFPVFETPVFDFGGGRIGVL 159 (186)
T ss_dssp HHHHTSEEEEEEEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTTTTTTHHHHSBEESSESEEEEETETEETTEEEEEE
T ss_pred HHhcCCcccccccccccccccceeEEEEeeecccccccceeeeccccccccceeeeeccceeeeeecceeeeccceEEEE
Confidence 9999999999999999999999999999999999999999999988888 88889988544566665 47999999
Q ss_pred eccC
Q 031422 157 KGFY 160 (160)
Q Consensus 157 ICy~ 160 (160)
||||
T Consensus 160 ICyd 163 (186)
T PF00795_consen 160 ICYD 163 (186)
T ss_dssp EGGG
T ss_pred EEcc
Confidence 9998
No 8
>PLN02504 nitrilase
Probab=100.00 E-value=1.6e-32 Score=209.16 Aligned_cols=149 Identities=23% Similarity=0.330 Sum_probs=126.6
Q ss_pred cccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccch------------h---hHhhhcccC
Q 031422 7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR------------E---DFFQRAKPY 70 (160)
Q Consensus 7 ~~~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~------------~---~~~~~~~~~ 70 (160)
.+||||++|+++ ..|.+.|++++.+++++|+++|+|||||||++++||+..... . .+...+...
T Consensus 23 ~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 102 (346)
T PLN02504 23 STVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASAIDV 102 (346)
T ss_pred CceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhcccC
Confidence 568999999998 578999999999999999999999999999999999752111 0 122334333
Q ss_pred CCChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCC-CceeEEeC
Q 031422 71 KDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT-GFKVFQTK 149 (160)
Q Consensus 71 ~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~-~~~v~~~~ 149 (160)
.++.++.|+++|++++++|++|++++.++++||++++|+++|+++.+|+|.|+.. .|..+|.+|.. .+++|+++
T Consensus 103 -~g~~i~~l~~~A~~~~i~iv~G~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~~----~E~~~f~~G~g~~~~vf~~~ 177 (346)
T PLN02504 103 -PGPEVDRLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTA----LERLIWGFGDGSTIPVYDTP 177 (346)
T ss_pred -CCHHHHHHHHHHHHcCCEEEEeeeecCCCceEEEEEEECCCCCEEeEEeeccCCc----ccceeeecCCCCCCceEEcC
Confidence 3678999999999999999999988888899999999999999999999998754 58888988862 36899999
Q ss_pred CeeEEEEeccC
Q 031422 150 FAKIGVGKGFY 160 (160)
Q Consensus 150 ~~rig~~ICy~ 160 (160)
++|+|++||||
T Consensus 178 ~griG~lICyD 188 (346)
T PLN02504 178 IGKIGAVICWE 188 (346)
T ss_pred CceEEEEEecc
Confidence 99999999998
No 9
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=1.2e-32 Score=202.17 Aligned_cols=143 Identities=29% Similarity=0.467 Sum_probs=126.0
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (160)
Q Consensus 10 ~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (160)
|||++|+++ ..+++.|++++.+++++|+++|+|||||||++++||...+... +.+... .+...+.++++++++++
T Consensus 1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~---~~~~~~-~~~~~~~l~~~a~~~~~ 76 (254)
T cd07576 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVA---RLAEPA-DGPALQALRAIARRHGI 76 (254)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcchhh---hhhccc-CChHHHHHHHHHHHcCC
Confidence 699999999 6899999999999999999999999999999999997654321 122222 35789999999999999
Q ss_pred EEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 89 ~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
++++|++++.++++||++++++++|+++.+|+|.||++. .|..+|.+|+. +.+|+++++|+|++||||
T Consensus 77 ~ii~G~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~---~E~~~~~~G~~-~~v~~~~~~kig~~IC~D 144 (254)
T cd07576 77 AIVVGYPERAGGAVYNAAVLIDEDGTVLANYRKTHLFGD---SERAAFTPGDR-FPVVELRGLRVGLLICYD 144 (254)
T ss_pred EEEEeccccCCCceEEEEEEECCCCCEeeEEEeeccCCc---chhhhccCCCC-ceEEEECCeEEEEEEeec
Confidence 999999988888999999999999999999999999862 57778999997 799999999999999998
No 10
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.1e-32 Score=203.56 Aligned_cols=138 Identities=29% Similarity=0.481 Sum_probs=121.9
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcE
Q 031422 10 VVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (160)
Q Consensus 10 ~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ 89 (160)
|||++|+++..|++.|++++.+++++|+++++|||||||++++||... ...++.. .+..++.|+++|++++++
T Consensus 1 ria~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~------~~~~~~~-~~~~~~~l~~lA~~~~i~ 73 (279)
T cd07579 1 RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDP------ASEAESD-TGPAVSALRRLARRLRLY 73 (279)
T ss_pred CEEEEeccCccCHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCCh------HHhcccC-CCHHHHHHHHHHHHcCeE
Confidence 699999999669999999999999999999999999999999998632 1122322 357899999999999999
Q ss_pred EEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 90 MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 90 i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
+++|++++.++++||++++++++| ++..|+|.||++ .|..+|.+|+. +++|+++++|+|++||||
T Consensus 74 iv~G~~~~~~~~~yNs~~vi~~~G-~i~~Y~K~hL~~----~E~~~f~~G~~-~~v~~~~~~kiG~~ICyD 138 (279)
T cd07579 74 LVAGFAEADGDGLYNSAVLVGPEG-LVGTYRKTHLIE----PERSWATPGDT-WPVYDLPLGRVGLLIGHD 138 (279)
T ss_pred EEEeceEccCCcEEEEEEEEeCCe-eEEEEecccCCC----cchhhccCCCC-CeeEEcCceeEEEEEecc
Confidence 999999888889999999999888 679999999986 47789999987 799999999999999998
No 11
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=100.00 E-value=2.2e-32 Score=201.20 Aligned_cols=141 Identities=16% Similarity=0.215 Sum_probs=116.1
Q ss_pred cccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHH
Q 031422 7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE 85 (160)
Q Consensus 7 ~~~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 85 (160)
.+||||++|+++ ..|++.|++++.++++++ +++|||||||++++||...+. . +....++..+.|+++|++
T Consensus 2 ~~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~~----~---~~~~~~~~~~~l~~~A~~ 72 (256)
T PRK10438 2 SGLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEAA----A---SSLPQDDVVAWMTAKAQQ 72 (256)
T ss_pred CCCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccch----h---hccccchHHHHHHHHHHH
Confidence 358999999998 579999999999999976 699999999999999975421 1 111124678899999999
Q ss_pred cCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 86 LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 86 ~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
+++.++++..+..++++|||+++++++|. +..|+|+||++. +.|..+|.+|+. +++|+++++|+|++||||
T Consensus 73 ~~~~i~g~~~~~~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~~--~~E~~~f~~G~~-~~v~~~~~~~iG~~ICyD 143 (256)
T PRK10438 73 TNALIAGSVALQTESGAVNRFLLVEPGGT-VHFYDKRHLFRM--ADEHLHYKAGNA-RVIVEWRGWRILPLVCYD 143 (256)
T ss_pred cCeEEEEEEEEecCCCeEEEEEEEcCCCC-EEEEeeeecCCC--CCccceecCCCC-ceEEEECCEEEEEEEEee
Confidence 99865444445556778999999999997 579999999753 368889999997 799999999999999998
No 12
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.8e-32 Score=200.77 Aligned_cols=145 Identities=37% Similarity=0.578 Sum_probs=125.7
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (160)
Q Consensus 10 ~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (160)
|||++|+++ ..|++.|++++++++++|+++++|||||||++++||.+........+.+... .+...+.++++|+++++
T Consensus 1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~i 79 (258)
T cd07584 1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPI-DGPTVRLFSELAKELGV 79 (258)
T ss_pred CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhccCC-CCcHHHHHHHHHHHcCe
Confidence 699999998 5899999999999999999999999999999999997654433333344433 35788999999999999
Q ss_pred EEEeccccccC--CeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 89 VMPVSFFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 89 ~i~~g~~~~~~--~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
++++|++++.+ +++||++++++++|+++..|+|.||++ .|..+|.+|+. +++|+++++|+|++||||
T Consensus 80 ~i~~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~----~e~~~~~~G~~-~~~~~~~~~~~g~~IC~D 148 (258)
T cd07584 80 YIVCGFVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG----LEKQYFREGEQ-YPVFDTPFGKIGVMICYD 148 (258)
T ss_pred EEEEeehcccCCCCceEEEEEEECCCCCEEeEEEeecCCc----hhhhhccCCCC-CeeEEcCCceEEEEEEcC
Confidence 99999987643 689999999999999999999999975 47778999987 799999999999999998
No 13
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=100.00 E-value=2.9e-32 Score=204.51 Aligned_cols=147 Identities=27% Similarity=0.391 Sum_probs=125.3
Q ss_pred cEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccch-------hh---HhhhcccCCCChHHH
Q 031422 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR-------ED---FFQRAKPYKDHPTIL 77 (160)
Q Consensus 9 ~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~-------~~---~~~~~~~~~~~~~~~ 77 (160)
||||++|+++ +.|++.|++++.+++++|+++++|+|||||++++||+..++. .. +.+.+.+. .+.+++
T Consensus 1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 79 (297)
T cd07564 1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEV-DGPELE 79 (297)
T ss_pred CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCC-CCHHHH
Confidence 6899999987 589999999999999999999999999999999999754321 11 22333332 367899
Q ss_pred HHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCC-CceeEEeCCeeEEEE
Q 031422 78 KMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT-GFKVFQTKFAKIGVG 156 (160)
Q Consensus 78 ~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~-~~~v~~~~~~rig~~ 156 (160)
.|+++|++++++|++|++++.++++||++++++++|+++..|+|+||.. .|..+|.+|+. .+++|+++++|+|++
T Consensus 80 ~l~~~a~~~~i~iv~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~----~E~~~~~~g~~~~~~v~~~~~~kig~~ 155 (297)
T cd07564 80 RLAEAARENGIYVVLGVSERDGGTLYNTQLLIDPDGELLGKHRKLKPTH----AERLVWGQGDGSGLRVVDTPIGRLGAL 155 (297)
T ss_pred HHHHHHHHcCcEEEEeeEeccCCceEEEEEEEcCCCCEeeeeeccCCCc----hhhhhcccCCCCCceEEecCCceEEEE
Confidence 9999999999999999988878899999999999999999999999754 57778888763 368999999999999
Q ss_pred eccC
Q 031422 157 KGFY 160 (160)
Q Consensus 157 ICy~ 160 (160)
||||
T Consensus 156 ICyD 159 (297)
T cd07564 156 ICWE 159 (297)
T ss_pred EEhh
Confidence 9998
No 14
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3.3e-32 Score=199.91 Aligned_cols=143 Identities=27% Similarity=0.429 Sum_probs=124.6
Q ss_pred EEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422 10 VVSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (160)
Q Consensus 10 ~va~~Q~~~~-~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (160)
|||++|+++. .|++.|++++.+++++|+++|+|||||||++++||.+.+. ...+.+. .+...+.++++++++++
T Consensus 1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~----~~~~~~~-~~~~~~~l~~~a~~~~~ 75 (253)
T cd07583 1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDL----YELADED-GGETVSFLSELAKKHGV 75 (253)
T ss_pred CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhH----Hhhhccc-CchHHHHHHHHHHHcCc
Confidence 6999999994 8999999999999999999999999999999999975432 1122322 46889999999999999
Q ss_pred EEEeccc-cccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 89 VMPVSFF-EEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 89 ~i~~g~~-~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
++++|+. ++.++++||++++++++|+++..|+|+||++. +.|..+|.+|+. +++|+++++|+|++||||
T Consensus 76 ~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~--~~e~~~~~~G~~-~~v~~~~~~rig~~IC~D 145 (253)
T cd07583 76 NIVAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGL--MGEDKYLTAGDE-LEVFELDGGKVGLFICYD 145 (253)
T ss_pred EEEeceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC--cCchhhccCCCC-ceEEEeCCeEEEEEEEec
Confidence 9999965 55678999999999999999999999999874 357788999997 799999999999999998
No 15
>PLN02798 nitrilase
Probab=100.00 E-value=5.2e-32 Score=202.16 Aligned_cols=151 Identities=27% Similarity=0.415 Sum_probs=126.1
Q ss_pred CCCcccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccc-ccccccccchhhHhhhcccCCCChHHHHHHHH
Q 031422 4 GKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELF-EGYYFCQAQREDFFQRAKPYKDHPTILKMQEL 82 (160)
Q Consensus 4 ~~~~~~~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (160)
+|..+||||++|+++..|++.|++++++++++|+++++|||||||++ ++|+.... ..+.++.. .+...+.|+++
T Consensus 6 ~~~~~~ria~~Q~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~----~~~~~~~~-~~~~~~~l~~~ 80 (286)
T PLN02798 6 TAGSSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGE----SLAIAEPL-DGPIMQRYRSL 80 (286)
T ss_pred cccCccEEEEEEccCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchh----hhhhcccC-CCHHHHHHHHH
Confidence 36678999999999888999999999999999999999999999984 56765332 23334433 35789999999
Q ss_pred HHHcCcEEEec-cccc--cCCeeeEEEEEEcCCCCEeEEeeeccCCCC-----CCcccceeecCCCCCceeEEeCCeeEE
Q 031422 83 AKELGVVMPVS-FFEE--ANNAHYNSIAIIDADGSDLGLYRKSHIPDG-----PGYQEKFYFNPGDTGFKVFQTKFAKIG 154 (160)
Q Consensus 83 a~~~~i~i~~g-~~~~--~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~-----~~~~e~~~~~~g~~~~~v~~~~~~rig 154 (160)
|+++++++++| .+++ .++++||++++++++|+++..|+|+||++. ..+.|..+|.+|+. +.+|+++++|+|
T Consensus 81 A~~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~-~~v~~~~~~k~g 159 (286)
T PLN02798 81 ARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKT-IVAVDSPVGRLG 159 (286)
T ss_pred HHHcCeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCe-eeEEecCCceEE
Confidence 99999999887 4454 457899999999999999999999999532 23457788999987 799999999999
Q ss_pred EEeccC
Q 031422 155 VGKGFY 160 (160)
Q Consensus 155 ~~ICy~ 160 (160)
++||||
T Consensus 160 ~~IC~D 165 (286)
T PLN02798 160 LTVCYD 165 (286)
T ss_pred EEEEEc
Confidence 999998
No 16
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=100.00 E-value=4.1e-32 Score=204.13 Aligned_cols=154 Identities=26% Similarity=0.390 Sum_probs=124.5
Q ss_pred cccEEEEEeCCC-CC--CHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccc---hhhHhhhcccCCCChHHHHHH
Q 031422 7 REVVVSALQFAC-TD--DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ---REDFFQRAKPYKDHPTILKMQ 80 (160)
Q Consensus 7 ~~~~va~~Q~~~-~~--~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~l~ 80 (160)
+++|||++|+++ .. +.+.|++++.+.+++|+++|+|||||||++++||..... ..+.....+....++..+.++
T Consensus 2 ~~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (302)
T cd07569 2 RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLF 81 (302)
T ss_pred ceEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHH
Confidence 468999999987 33 789999999999999999999999999999999854211 111221112112357888999
Q ss_pred HHHHHcCcEEEecccccc-CC---eeeEEEEEEcCCCCEeEEeeeccCCCCCCc--------ccceeecCCCCCceeEEe
Q 031422 81 ELAKELGVVMPVSFFEEA-NN---AHYNSIAIIDADGSDLGLYRKSHIPDGPGY--------QEKFYFNPGDTGFKVFQT 148 (160)
Q Consensus 81 ~~a~~~~i~i~~g~~~~~-~~---~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~--------~e~~~~~~g~~~~~v~~~ 148 (160)
++|+++++++++|++++. ++ ++||++++|+++|+++.+|+|+||++.+++ .|..+|.+|+..+++|++
T Consensus 82 ~~a~~~~i~iv~G~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~~v~~~ 161 (302)
T cd07569 82 DRAKELGIGFYLGYAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGFPVFRV 161 (302)
T ss_pred HHHHHhCeEEEEeceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCCceEec
Confidence 999999999999998753 34 899999999999999999999999875432 367789999933799999
Q ss_pred CCeeEEEEeccC
Q 031422 149 KFAKIGVGKGFY 160 (160)
Q Consensus 149 ~~~rig~~ICy~ 160 (160)
+++|+|++||||
T Consensus 162 ~~~rig~~IC~D 173 (302)
T cd07569 162 PGGIMGMCICND 173 (302)
T ss_pred CCceEEEEEeec
Confidence 999999999998
No 17
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=100.00 E-value=2e-32 Score=201.89 Aligned_cols=144 Identities=24% Similarity=0.327 Sum_probs=121.5
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchh--hHhhhcccCCCChHHHHHHHHHHHc
Q 031422 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQRE--DFFQRAKPYKDHPTILKMQELAKEL 86 (160)
Q Consensus 10 ~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~a~~~ 86 (160)
|||++|+++ ..|++.|++++.+.+++|+++|+|||||||++++||...+... .+.+. ....++.|.+.++++
T Consensus 1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~ 75 (261)
T cd07570 1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDFLEA-----AEEALEELAAATADL 75 (261)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHHHhhCHHHHHH-----HHHHHHHHHHhcccC
Confidence 699999998 5899999999999999999999999999999999997543211 11110 123445555555667
Q ss_pred CcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 87 ~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
++++++|++++.++++||+++++ ++|+++.+|+|+||++++.+.|..+|.+|+. +.+|+++++|+|++||||
T Consensus 76 ~i~ii~G~~~~~~~~~yNs~~~i-~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D 147 (261)
T cd07570 76 DIAVVVGLPLRHDGKLYNAAAVL-QNGKILGVVPKQLLPNYGVFDEKRYFTPGDK-PDVLFFKGLRIGVEICED 147 (261)
T ss_pred CcEEEEeceEecCCCEEEEEEEE-eCCEEEEEEECccCcCCccccccccCccCCC-CCeEEECCEEEEEEeecc
Confidence 99999999988888999999999 6899999999999998877889999999997 689999999999999998
No 18
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=100.00 E-value=5.9e-32 Score=199.69 Aligned_cols=147 Identities=32% Similarity=0.438 Sum_probs=124.1
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcE
Q 031422 10 VVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (160)
Q Consensus 10 ~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ 89 (160)
|||++|+++..+++.|++++.+++++|+++++|||||||++++||.+...... ..+. ...+...+.++++|++++++
T Consensus 1 kia~~Q~~~~~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~--~~~~-~~~~~~~~~l~~~a~~~~i~ 77 (265)
T cd07572 1 RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLA--LAEE-EGDGPTLQALSELAKEHGIW 77 (265)
T ss_pred CEEEEEeeCCCCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchhhhhh--hhcc-ccCChHHHHHHHHHHHCCeE
Confidence 69999999888999999999999999999999999999999999875432111 0112 12357889999999999999
Q ss_pred EEec-cccccC--CeeeEEEEEEcCCCCEeEEeeeccCCCC-----CCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 90 MPVS-FFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDG-----PGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 90 i~~g-~~~~~~--~~~~Ns~~~i~~~G~i~~~y~K~~l~~~-----~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
+++| ++++.+ +++||++++++++|+++..|+|+||++. ..+.|..+|.+|+. +.+|+++++|+|++||||
T Consensus 78 i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D 155 (265)
T cd07572 78 LVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDE-VVVVDTPFGKIGLGICYD 155 (265)
T ss_pred EEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCc-ceEEecCCceEEEEEEec
Confidence 9987 556655 8999999999999999999999999532 23678889999997 799999999999999998
No 19
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1e-31 Score=197.42 Aligned_cols=147 Identities=30% Similarity=0.490 Sum_probs=126.7
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEE
Q 031422 11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90 (160)
Q Consensus 11 va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i 90 (160)
||++|+++.+|++.|++++.+++++|+++|+|+|||||++++||...+. .+.+.+.+. .+..++.++++|+++++++
T Consensus 1 ia~~Q~~~~~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~--~~~~~~~~~-~~~~~~~l~~~a~~~~i~i 77 (255)
T cd07581 1 VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLD--DYARVAEPL-DGPFVSALARLARELGITV 77 (255)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchh--hHHhhhccC-CCHHHHHHHHHHHHcCeEE
Confidence 6899999989999999999999999999999999999999999975432 123334433 3578899999999999999
Q ss_pred EeccccccC-CeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCC-ceeEEeCCeeEEEEeccC
Q 031422 91 PVSFFEEAN-NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG-FKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 91 ~~g~~~~~~-~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~-~~v~~~~~~rig~~ICy~ 160 (160)
++|++++.+ +++||++++|+++|+++.+|+|.||++...+.|..+|.+|+.. ..+++++++|+|++||||
T Consensus 78 v~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~~~~e~~~~~~G~~~~~~~~~~~~~kig~~IC~D 149 (255)
T cd07581 78 VAGMFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAFGFRESDTVAPGDELPPVVFVVGGVKVGLATCYD 149 (255)
T ss_pred EEEeeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCCCCcCcccccCCCCCCCceEEecCCceEEEEEEec
Confidence 999998865 4899999999999999999999999876667788899999862 367888899999999998
No 20
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.98 E-value=2e-31 Score=197.32 Aligned_cols=145 Identities=35% Similarity=0.594 Sum_probs=123.8
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (160)
Q Consensus 10 ~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (160)
|||++|+++ ..+++.|++++.+++++|+++++|||||||++++||...+.. +....+.....+...+.++++|+++++
T Consensus 1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (268)
T cd07580 1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRD-EAFALAEEVPDGASTRAWAELAAELGL 79 (268)
T ss_pred CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCCHH-HHHHhhccCCCCchHHHHHHHHHHcCc
Confidence 699999999 489999999999999999999999999999999998755422 122222222235688999999999999
Q ss_pred EEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 89 ~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
++++|++++.++++||++++++++|. +..|+|.||++ .|..+|.+|+..+++|+++++|+|++||||
T Consensus 80 ~i~~G~~~~~~~~~yNs~~vi~~~g~-~~~y~K~~l~~----~e~~~f~~G~~~~~v~~~~~~~ig~~IC~D 146 (268)
T cd07580 80 YIVAGFAERDGDRLYNSAVLVGPDGV-IGTYRKAHLWN----EEKLLFEPGDLGLPVFDTPFGRIGVAICYD 146 (268)
T ss_pred EEEeecccccCCceEEEEEEECCCCc-EEEEEEecCCc----hhcceecCCCCCCceEEcCCCcEEEEEECc
Confidence 99999998888899999999998885 78999999986 477899999865689999999999999998
No 21
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.98 E-value=3.9e-31 Score=194.80 Aligned_cols=145 Identities=26% Similarity=0.324 Sum_probs=122.2
Q ss_pred cEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcC
Q 031422 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG 87 (160)
Q Consensus 9 ~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 87 (160)
+|||++|+++ .+|++.|++++.+.+++|+++|+|||||||++++||...+.. +.....+.. .+...+.+++++++++
T Consensus 1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~~-~~~~~~~~~-~~~~~~~l~~~a~~~~ 78 (258)
T cd07578 1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDRA-EIAPFVEPI-PGPTTARFAELAREHD 78 (258)
T ss_pred CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCHH-HhhhhcccC-CCHHHHHHHHHHHHcC
Confidence 5899999998 589999999999999999999999999999999999754431 122233322 3578899999999999
Q ss_pred cEEEecccccc--CCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 88 VVMPVSFFEEA--NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 88 i~i~~g~~~~~--~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
+.+++|++++. ++++||++++|+++| ++.+|+|.||+. .|..+|.+|+..+.+|+++++|+|++||||
T Consensus 79 i~ii~G~~~~~~~~~~~yNs~~vi~~~g-~~~~y~K~h~~~----~e~~~~~~g~~~~~v~~~~~~rig~~IC~D 148 (258)
T cd07578 79 CYIVVGLPEVDSRSGIYYNSAVLIGPSG-VIGRHRKTHPYI----SEPKWAADGDLGHQVFDTEIGRIALLICMD 148 (258)
T ss_pred cEEEEecceecCCCCCeeEEEEEECCCC-cEEeEeeecCCc----ccccccCCCCCCceEEECCCccEEEEEeeC
Confidence 99999998764 478999999999888 789999999864 467789999854689999999999999998
No 22
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=99.98 E-value=6.1e-31 Score=193.18 Aligned_cols=141 Identities=22% Similarity=0.271 Sum_probs=122.1
Q ss_pred cEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcC
Q 031422 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG 87 (160)
Q Consensus 9 ~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 87 (160)
||||++|+++ ..|++.|++++.+.+++|++ |+|||||||++++||.+.. .+.++.. .+..+++++++|++++
T Consensus 1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~-----~~~~~~~-~~~~~~~l~~la~~~~ 73 (252)
T cd07575 1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNA-----EALAEPM-NGPTLQWMKAQAKKKG 73 (252)
T ss_pred CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccH-----HHhhccc-CChHHHHHHHHHHHCC
Confidence 6899999999 58999999999999999997 9999999999999997532 1233332 3578999999999999
Q ss_pred cEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 88 VVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 88 i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
+.+++|++++.++++||++++++++|.+ ..|+|+||++.+ .|..+|.+|+. ..+|+++++|+|++||||
T Consensus 74 i~i~~~~~~~~~~~~yNs~~~i~~~G~i-~~y~K~~l~~~~--~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D 142 (252)
T cd07575 74 AAITGSLIIKEGGKYYNRLYFVTPDGEV-YHYDKRHLFRMA--GEHKVYTAGNE-RVIVEYKGWKILLQVCYD 142 (252)
T ss_pred eEEEEEEEEccCCceEEEEEEECCCCCE-EEEeeeecCCCC--CccceecCCCC-ceEEEECCEEEEEEEEec
Confidence 9999888888888999999999999986 499999997542 57788999986 799999999999999998
No 23
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.98 E-value=3.8e-31 Score=195.06 Aligned_cols=141 Identities=26% Similarity=0.410 Sum_probs=122.9
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (160)
Q Consensus 10 ~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (160)
|||++|+++ .+|++.|++++.+++++|+++|+|||||||++++||.+.+.. ...+. ...+..++.++++|+++++
T Consensus 1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~~---~~~~~-~~~~~~~~~l~~~a~~~~~ 76 (261)
T cd07585 1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRAL---SREAE-VPDGPSTQALSDLARRYGL 76 (261)
T ss_pred CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCccc---chhcc-cCCChHHHHHHHHHHHcCc
Confidence 699999998 589999999999999999999999999999999999764321 11111 1236788999999999999
Q ss_pred EEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 89 ~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
++++|++++.++++||++++++++|. +..|+|.||++ .|..+|.+|+. +++|+++++|+|++||||
T Consensus 77 ~i~~G~~~~~~~~~yNs~~vi~~~g~-i~~y~K~~l~~----~E~~~~~~G~~-~~v~~~~~~rig~~IC~D 142 (261)
T cd07585 77 TILAGLIEKAGDRPYNTYLVCLPDGL-VHRYRKLHLFR----REHPYIAAGDE-YPVFATPGVRFGILICYD 142 (261)
T ss_pred EEEEeccccCCCceeEEEEEECCCCc-EeEEeeecCCc----cccceEcCCCC-CceEEcCCceEEEEEEcC
Confidence 99999998888899999999999887 58999999987 47789999987 799999999999999998
No 24
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.98 E-value=4.3e-31 Score=194.65 Aligned_cols=142 Identities=35% Similarity=0.582 Sum_probs=122.1
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (160)
Q Consensus 10 ~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (160)
|||++|+++ ..|++.|++++.+++++|+ +|||||||++++||..... ..+.+.+++..++..++.|+++|+++++
T Consensus 1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~~~-~~~~~~~~~~~~~~~~~~l~~~a~~~~i 76 (259)
T cd07577 1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTSK-EEVASLAESIPDGPTTRFLQELARETGA 76 (259)
T ss_pred CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcCCH-HHHHHhhcccCCChHHHHHHHHHHHhCc
Confidence 699999998 5899999999999999884 9999999999999975432 2334444433246889999999999999
Q ss_pred EEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 89 ~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
++++|++++.++++||++++++++| ++.+|+|+||++ .|..+|++|+..+.+|+++++|+|++||||
T Consensus 77 ~ii~G~~~~~~~~~yNs~~vi~~~G-i~~~y~K~~l~~----~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D 143 (259)
T cd07577 77 YIVAGLPERDGDKFYNSAVVVGPEG-YIGIYRKTHLFY----EEKLFFEPGDTGFRVFDIGDIRIGVMICFD 143 (259)
T ss_pred EEEecceeccCCceEEEEEEECCCc-cEeeEeeccCCh----hhhccccCCCCCCceEEeCCcEEEEEEEcC
Confidence 9999999888889999999999888 899999999976 477889999833799999999999999998
No 25
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=99.97 E-value=2.9e-31 Score=198.37 Aligned_cols=147 Identities=19% Similarity=0.253 Sum_probs=118.8
Q ss_pred cEEEEEeCCC-CCCH-------HHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHh-h-----------hc-
Q 031422 9 VVVSALQFAC-TDDV-------STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFF-Q-----------RA- 67 (160)
Q Consensus 9 ~~va~~Q~~~-~~~~-------~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~-~-----------~~- 67 (160)
.++|+||..+ +.+. +.|++++.+++++|+++++|||||||++++||...++..... + .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (299)
T cd07567 1 YIAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLD 80 (299)
T ss_pred CEEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhccccccccccccccc
Confidence 3789999987 4444 899999999999999999999999999999997654321110 0 00
Q ss_pred -ccCCCChHHHHHHHHHHHcCcEEEecccccc-----------C-CeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccce
Q 031422 68 -KPYKDHPTILKMQELAKELGVVMPVSFFEEA-----------N-NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKF 134 (160)
Q Consensus 68 -~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-----------~-~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~ 134 (160)
.....+..++.|+++|++++++|++|+.++. + +++||++++|+++|+++.+|+|+||+ .|..
T Consensus 81 ~~~~~~~~~~~~l~~lAr~~~i~Iv~G~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf-----~E~~ 155 (299)
T cd07567 81 PDRFDYTEVLQRLSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF-----GEPG 155 (299)
T ss_pred ccccCchHHHHHHHHHHHHhCeEEEeccccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc-----cccc
Confidence 0112357889999999999999999988763 2 36999999999999999999999997 3777
Q ss_pred eecCCCCCceeEEeCCe-eEEEEeccC
Q 031422 135 YFNPGDTGFKVFQTKFA-KIGVGKGFY 160 (160)
Q Consensus 135 ~~~~g~~~~~v~~~~~~-rig~~ICy~ 160 (160)
+|.+|+..+.+|+++++ |+|++||||
T Consensus 156 ~~~~G~~~~~vf~t~~g~kiGvlICyD 182 (299)
T cd07567 156 FDVPPEPEIVTFDTDFGVTFGIFTCFD 182 (299)
T ss_pred ccCCCCCCceEEECCCCCEEEEEEEee
Confidence 88899644789999975 999999998
No 26
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=99.97 E-value=7e-31 Score=195.00 Aligned_cols=149 Identities=37% Similarity=0.537 Sum_probs=124.9
Q ss_pred ccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHc
Q 031422 8 EVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (160)
Q Consensus 8 ~~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 86 (160)
.+|||++|+++ ..|.+.|++++.+++++|+++++|||||||++++||.+.+ ..+.+.+.....+...+.++++++++
T Consensus 2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~--~~~~~~~~~~~~~~~~~~l~~~a~~~ 79 (274)
T COG0388 2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCED--DLFLEEAAAEAGEETLEFLAALAEEG 79 (274)
T ss_pred ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCccc--HHHHHhhhhccCChHHHHHHHHHHhC
Confidence 58999999998 7899999999999999999999999999999999998775 22333333334568999999999966
Q ss_pred CcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 87 ~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
.+.+++|...... ..||++++++++|+++.+|+|.||++. .+.|+.+|.+|+....+|+++++|+|++||||
T Consensus 80 ~~~ivg~~~~~~~-~~~~~~~~i~~~G~ii~~y~K~hl~~~-~~~e~~~~~~G~~~~~v~~~~~~kig~~IC~D 151 (274)
T COG0388 80 GVIIVGGPLPERE-KLYNNAALIDPDGEILGKYRKLHLFDA-FYEERRFFTPGDEGVVVFETDGGKIGLLICYD 151 (274)
T ss_pred CeEEEEeeeeccc-cceeeEEEEcCCCcEEeEEeeecCCCC-ccchhhhccCCCccceeEEeCCceEEEEEEee
Confidence 6666665443333 788888888899999999999999986 66799999999973359999999999999998
No 27
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.97 E-value=7.4e-31 Score=194.32 Aligned_cols=143 Identities=27% Similarity=0.413 Sum_probs=120.3
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422 10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (160)
Q Consensus 10 ~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (160)
|||++|+++ ..+++.|++++.+.+++|+++|+|+|||||++++||.+.+. ..+.+... ..+.++.|++.++ ++
T Consensus 1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~~---~~~~~~~~-~~~~~~~l~~~a~--~~ 74 (269)
T cd07586 1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGDL---VYEVAMHA-DDPRLQALAEASG--GI 74 (269)
T ss_pred CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchhh---hhhhhccc-chHHHHHHHHHcC--CC
Confidence 699999998 58999999999999999999999999999999999986532 12222221 2355666666652 89
Q ss_pred EEEecccccc-CCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 89 VMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 89 ~i~~g~~~~~-~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
.+++|++++. ++++||+++++ ++|+++.+|+|+|||+++.+.|..+|++|+. +.+|+++++|+|++||||
T Consensus 75 ~ii~G~~~~~~~~~~yNt~~vi-~~G~i~~~y~K~~lp~~~~~~e~~~~~~G~~-~~vf~~~~~~ig~~IC~D 145 (269)
T cd07586 75 CVVFGFVEEGRDGRFYNSAAYL-EDGRVVHVHRKVYLPTYGLFEEGRYFAPGSH-LRAFDTRFGRAGVLICED 145 (269)
T ss_pred EEEEeCeEEcCCCcEEEEEEEe-cCCEEEEEEEeEeCCCCCccceeeeecCCCc-ceEEEeCCeEEEEEEEec
Confidence 9999998876 48999999999 8999999999999987766778889999997 799999999999999998
No 28
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=99.97 E-value=1.9e-30 Score=190.14 Aligned_cols=144 Identities=40% Similarity=0.638 Sum_probs=124.8
Q ss_pred EEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcE
Q 031422 11 VSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (160)
Q Consensus 11 va~~Q~~~~-~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ 89 (160)
||++|+++. .+.++|++++.+.+++|+++++|+|||||++++||...+..... ..... ......++++++++++++.
T Consensus 1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~-~~~~~-~~~~~~~~l~~~a~~~~i~ 78 (253)
T cd07197 1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDL-DLAEE-LDGPTLEALAELAKELGIY 78 (253)
T ss_pred CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchhhh-hhccc-CCchHHHHHHHHHHHhCeE
Confidence 689999995 89999999999999999999999999999999998765432111 11121 1357899999999999999
Q ss_pred EEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 90 MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 90 i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
+++|++++.++++||++++++++|+++.+|+|.||++ +.|..+|.+|+. ..+|+++++|+|++||||
T Consensus 79 ii~G~~~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~---~~E~~~~~~g~~-~~~f~~~~~~ig~~IC~d 145 (253)
T cd07197 79 IVAGIAEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFD---FGERRYFSPGDE-FPVFDTPGGKIGLLICYD 145 (253)
T ss_pred EEeeeEEccCCceEEEEEEECCCCeEEEEEEEeecCC---CcccceecCCCC-CceEEcCCceEEEEEEec
Confidence 9999998888899999999999999999999999987 367788999987 799999999999999998
No 29
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=99.97 E-value=1.5e-30 Score=194.54 Aligned_cols=150 Identities=23% Similarity=0.265 Sum_probs=115.5
Q ss_pred EEEEEeCCCC-CCHHHHHHHHHHHHHHHHh----CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHH
Q 031422 10 VVSALQFACT-DDVSTNLATAERLVRAAHG----KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAK 84 (160)
Q Consensus 10 ~va~~Q~~~~-~~~~~n~~~~~~~i~~a~~----~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 84 (160)
|||++|+++. .|++.|++++.+++++|++ +++|||||||++++||...+. .+....++....+...+.++++|+
T Consensus 1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~-~~~~~~ae~~~~g~~~~~l~~lAk 79 (295)
T cd07566 1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSL-EHIKPYLEPTTSGPSFEWAREVAK 79 (295)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccH-HHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6999999984 8999999999999999988 899999999999999975432 112223332224678899999999
Q ss_pred HcCcEEEeccccccC---CeeeEEEEEEcCCCCEeEEeeeccCCCCCC---cccc-eeec------CCCCCce-eEEeCC
Q 031422 85 ELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPG---YQEK-FYFN------PGDTGFK-VFQTKF 150 (160)
Q Consensus 85 ~~~i~i~~g~~~~~~---~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~---~~e~-~~~~------~g~~~~~-v~~~~~ 150 (160)
+++++|++|++++.+ +++|||+++|+++|+++++|+|+||++... +.|. .++. +|+.... ++...+
T Consensus 80 ~~~i~Iv~G~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~~~~~~~~e~~~~~~~~~~~~~G~~~~~~~~~~~~ 159 (295)
T cd07566 80 KFNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYTDEEWGCEENPGGFQTFPLPFAKDDDFDGGSVDVT 159 (295)
T ss_pred hcCCEEEEeeeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCCCcccccCCCCCccccccccccccccccccccCCc
Confidence 999999999887753 489999999999999999999999986421 1122 1222 7765222 233358
Q ss_pred eeEEEEeccC
Q 031422 151 AKIGVGKGFY 160 (160)
Q Consensus 151 ~rig~~ICy~ 160 (160)
+|+|++||||
T Consensus 160 ~kiG~~ICyD 169 (295)
T cd07566 160 LKTSIGICMD 169 (295)
T ss_pred ceeEEEEEec
Confidence 9999999998
No 30
>PRK02628 nadE NAD synthetase; Reviewed
Probab=99.97 E-value=1.8e-30 Score=212.40 Aligned_cols=150 Identities=23% Similarity=0.223 Sum_probs=126.9
Q ss_pred cccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHH
Q 031422 7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE 85 (160)
Q Consensus 7 ~~~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 85 (160)
+.||||++|+++ .+|++.|++++.+.+++|+++++|||||||++++||.+.+...... ..+. ....++.|++++++
T Consensus 11 ~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl~~~~~-~~~~--~~~~l~~L~~~a~~ 87 (679)
T PRK02628 11 GFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDT-LLDA--VEDALATLVEASAD 87 (679)
T ss_pred CcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchhhccHH-HHHh--hHHHHHHHHHHHhh
Confidence 568999999999 5899999999999999999999999999999999998776421111 1111 13677889999999
Q ss_pred cCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCc----------------eeEEe-
Q 031422 86 LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF----------------KVFQT- 148 (160)
Q Consensus 86 ~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~----------------~v~~~- 148 (160)
+++.+++|++++.++++||++++++ +|++++.|+|+|||++..|.|.++|.+|+... .+|++
T Consensus 88 ~~i~ivvG~p~~~~~~lyNsa~vi~-~G~il~~y~K~hLp~~~~f~E~r~F~~G~~~~~~~~~~~g~~vpfG~~~vf~~~ 166 (679)
T PRK02628 88 LDPLLVVGAPLRVRHRLYNCAVVIH-RGRILGVVPKSYLPNYREFYEKRWFAPGDGARGETIRLCGQEVPFGTDLLFEAE 166 (679)
T ss_pred cCEEEEEeeEEEECCEEEEEEEEEc-CCEEEEEeccccCCCCCcccccccccCCCCCCCceEeecCeeeccCCceeEEec
Confidence 9999999998877889999999996 79999999999999988899999999998511 24655
Q ss_pred --CCeeEEEEeccC
Q 031422 149 --KFAKIGVGKGFY 160 (160)
Q Consensus 149 --~~~rig~~ICy~ 160 (160)
+++|+|+.||||
T Consensus 167 ~~~g~kiGv~IC~D 180 (679)
T PRK02628 167 DLPGFVFGVEICED 180 (679)
T ss_pred ccCCcEEEEEEecc
Confidence 689999999998
No 31
>PRK13981 NAD synthetase; Provisional
Probab=99.97 E-value=2.3e-30 Score=207.85 Aligned_cols=144 Identities=26% Similarity=0.265 Sum_probs=123.4
Q ss_pred cEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHH--
Q 031422 9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE-- 85 (160)
Q Consensus 9 ~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~-- 85 (160)
||||++|+++ .+|++.|++++.+.+++|+++|+|||||||++++||.+.++..... . .....+.+.+++++
T Consensus 1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d~~~~~~-~-----~~~~~~~l~~La~~~~ 74 (540)
T PRK13981 1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPA-F-----LAACEAALERLAAATA 74 (540)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhhhhcCHH-H-----HHHHHHHHHHHHHhcC
Confidence 6899999998 6899999999999999999999999999999999998654311100 0 01234556677766
Q ss_pred cCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 86 LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 86 ~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
+++.+++|++++.++++||++++++ +|+++..|+|+||++++.|.|..+|++|+. ..+|+++++|+|++||||
T Consensus 75 ~~i~ii~G~~~~~~~~~yNsa~vi~-~G~i~~~y~K~~L~~~~~~~E~~~f~~G~~-~~~~~~~g~rigv~IC~D 147 (540)
T PRK13981 75 GGPAVLVGHPWREGGKLYNAAALLD-GGEVLATYRKQDLPNYGVFDEKRYFAPGPE-PGVVELKGVRIGVPICED 147 (540)
T ss_pred CCCEEEEeCcEeeCCcEEEEEEEEE-CCeEEEEEeeeeCCCCCCcCccccccCCCC-ceEEEECCEEEEEEEehh
Confidence 7999999999888889999999997 799999999999999888899999999987 689999999999999998
No 32
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=99.97 E-value=7.9e-30 Score=190.68 Aligned_cols=144 Identities=24% Similarity=0.209 Sum_probs=118.8
Q ss_pred cEEEEEeCCC-----CCCHHHHHHHHHHHHHHHHh--CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHH
Q 031422 9 VVVSALQFAC-----TDDVSTNLATAERLVRAAHG--KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE 81 (160)
Q Consensus 9 ~~va~~Q~~~-----~~~~~~n~~~~~~~i~~a~~--~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (160)
++||++|+++ ..+++.|++++.+++++|++ +|+|||||||++++||..... +..+.++.. .++.++.|++
T Consensus 1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~~--~~~~~a~~~-~~~~~~~l~~ 77 (291)
T cd07565 1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDKW--TMDETACTV-PGPETDIFAE 77 (291)
T ss_pred CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCcc--hhhhhccCC-CChhHHHHHH
Confidence 4799999997 47899999999999999986 599999999999999874321 234444443 3678999999
Q ss_pred HHHHcCcEEEeccccccC---CeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeC-CeeEEEEe
Q 031422 82 LAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAKIGVGK 157 (160)
Q Consensus 82 ~a~~~~i~i~~g~~~~~~---~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~-~~rig~~I 157 (160)
+|+++++++++|+.++.+ +++||++++|+++|+++.+|+|+||+.. ...|.+|+..++++++. |+|+|++|
T Consensus 78 lA~~~~i~i~~g~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~~-----~e~~~~G~~~~~v~~~~~g~riG~~I 152 (291)
T cd07565 78 ACKEAKVWGVFSIMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWVP-----IEPWYPGDLGTPVCEGPKGSKIALII 152 (291)
T ss_pred HHHHCCeEEEEEeeeecCCCCCceEEEEEEECCCCcEEEEEEecccCCC-----cccccCCCCCceeeECCCCCEEEEEE
Confidence 999999999999887653 6899999999999999999999998542 23478998546889985 67999999
Q ss_pred ccC
Q 031422 158 GFY 160 (160)
Q Consensus 158 Cy~ 160 (160)
|||
T Consensus 153 CyD 155 (291)
T cd07565 153 CHD 155 (291)
T ss_pred EcC
Confidence 998
No 33
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=99.97 E-value=1.6e-30 Score=212.63 Aligned_cols=150 Identities=14% Similarity=0.056 Sum_probs=120.3
Q ss_pred cccEEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHH
Q 031422 7 REVVVSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE 85 (160)
Q Consensus 7 ~~~~va~~Q~~~~-~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 85 (160)
+.||||++|++++ +|++.|++++.+.+++|+++|+|||||||++++||.+.+... +.+........+..|.+.+++
T Consensus 2 ~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl~~---~~~~~~~~~~~L~~La~~a~~ 78 (700)
T PLN02339 2 RLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDHFL---ELDTVTHSWECLAEILVGDLT 78 (700)
T ss_pred ceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHHhh---ChhHHHHHHHHHHHHHhhccc
Confidence 4689999999995 799999999999999999999999999999999998765321 111100001344444444457
Q ss_pred cCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCC-----------------------
Q 031422 86 LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG----------------------- 142 (160)
Q Consensus 86 ~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~----------------------- 142 (160)
+++.+++|+++..++++||+++++ .+|++++.|+|.|||+++.|.|.++|.||+..
T Consensus 79 ~~i~vvvG~p~~~~~~lYN~a~vi-~~GkIlg~y~K~hLpny~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g~~~vpf 157 (700)
T PLN02339 79 DGILCDIGMPVIHGGVRYNCRVFC-LNRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPF 157 (700)
T ss_pred CCeEEEEeeeEEECCeEEEEEEEE-eCCEEEEEEecccCCCCCccccccccccCccCCcceeeccccchhhccCCceecc
Confidence 799999999987778899999999 57999999999999998889999999998521
Q ss_pred -ceeEEeCCeeEEEEeccC
Q 031422 143 -FKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 143 -~~v~~~~~~rig~~ICy~ 160 (160)
..+|++++.|+|+.||||
T Consensus 158 g~~~~~~~g~~iGv~ICeD 176 (700)
T PLN02339 158 GDGYLQFLDTAVAAETCEE 176 (700)
T ss_pred CcceeecCCeEEEEEEecc
Confidence 124566788999999998
No 34
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=99.97 E-value=2.7e-30 Score=191.52 Aligned_cols=137 Identities=18% Similarity=0.214 Sum_probs=120.6
Q ss_pred cEEEEEeCCCC-C------CHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHH
Q 031422 9 VVVSALQFACT-D------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE 81 (160)
Q Consensus 9 ~~va~~Q~~~~-~------~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (160)
+|||++|+++. . +.++|++++.+++++|+++++|+|||||++++||.. ..+..++.+++
T Consensus 1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~--------------~~~~~~~~l~~ 66 (270)
T cd07571 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQ--------------RDPDALARLAR 66 (270)
T ss_pred CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCcccc--------------cCHHHHHHHHH
Confidence 48999999983 3 789999999999999999999999999999998751 13578899999
Q ss_pred HHHHcCcEEEeccccccC--CeeeEEEEEEcCCCCEeEEeeeccCCCCCCc---------------ccceeecCCCCCce
Q 031422 82 LAKELGVVMPVSFFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDGPGY---------------QEKFYFNPGDTGFK 144 (160)
Q Consensus 82 ~a~~~~i~i~~g~~~~~~--~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~---------------~e~~~~~~g~~~~~ 144 (160)
+|+++++++++|++++.+ +++||++++++++|+++.+|+|+||++..++ .|..+|.+|+. +.
T Consensus 67 ~ak~~~i~ii~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~-~~ 145 (270)
T cd07571 67 AARAVGAPLLTGAPRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTG-PQ 145 (270)
T ss_pred HHHhcCCeEEEeeeeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCC-CC
Confidence 999999999999987755 4899999999999999999999999876543 35678999987 79
Q ss_pred eEEeCC-eeEEEEeccC
Q 031422 145 VFQTKF-AKIGVGKGFY 160 (160)
Q Consensus 145 v~~~~~-~rig~~ICy~ 160 (160)
+|++++ +|+|++||||
T Consensus 146 vf~~~~~~r~g~~IC~D 162 (270)
T cd07571 146 PLLLGGGVRVGPLICYE 162 (270)
T ss_pred ccccCCCceEEEEEEee
Confidence 999999 9999999998
No 35
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.97 E-value=9.8e-30 Score=189.33 Aligned_cols=147 Identities=24% Similarity=0.321 Sum_probs=118.3
Q ss_pred cEEEEEeCCCC--CCHHHHHHHHHHHHHHHHhCCCcEEEecccccccccc---ccch--hhHhhhcccCCCChHHHHHHH
Q 031422 9 VVVSALQFACT--DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFC---QAQR--EDFFQRAKPYKDHPTILKMQE 81 (160)
Q Consensus 9 ~~va~~Q~~~~--~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~---~~~~--~~~~~~~~~~~~~~~~~~l~~ 81 (160)
||||++|+++. .+.+.|++++++++++|+++|+|||||||++++||.. .+.. .+....... ..+...+.+++
T Consensus 1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 79 (280)
T cd07574 1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALAA-LTPDYVALFSE 79 (280)
T ss_pred CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHHH-HHHHHHHHHHH
Confidence 68999999983 7999999999999999999999999999999988521 1110 111111111 12578899999
Q ss_pred HHHHcCcEEEecc-ccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEEEEeccC
Q 031422 82 LAKELGVVMPVSF-FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 82 ~a~~~~i~i~~g~-~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy~ 160 (160)
+|++++++|++|. +++.++++||++++++++|.+ .+|+|.||++.. .+..++.+|+. +.+|+++++|+|++||||
T Consensus 80 ~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e--~~~~~~~~G~~-~~v~~~~~~~ig~~IC~D 155 (280)
T cd07574 80 LARKYGINIIAGSMPVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFE--REEWGISGGDK-LKVFDTDLGKIGILICYD 155 (280)
T ss_pred HHHHhCCEEEecceEEcCCCCeEEEEEEECCCCCE-EEEeeeccCchh--hhcccccCCCC-ceEEecCCccEEEEEecc
Confidence 9999999999985 456778999999999999987 999999998742 23345789987 789999999999999998
No 36
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.97 E-value=3.3e-29 Score=187.72 Aligned_cols=150 Identities=25% Similarity=0.296 Sum_probs=119.8
Q ss_pred EEEEEeCCC-----CCCHHHHHHHHHHHHHHHHh-----CCCcEEEeccccccccccccchhh--HhhhcccCCCChHHH
Q 031422 10 VVSALQFAC-----TDDVSTNLATAERLVRAAHG-----KGANIILIQELFEGYYFCQAQRED--FFQRAKPYKDHPTIL 77 (160)
Q Consensus 10 ~va~~Q~~~-----~~~~~~n~~~~~~~i~~a~~-----~~~dlvv~PE~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~ 77 (160)
+++.+|... .+|++.|++++.+++++|++ +++|||||||++++||...+.... +.+.+++. +++.++
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~-~~~~~~ 80 (294)
T cd07582 2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDI-PGPETE 80 (294)
T ss_pred eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccC-CCHHHH
Confidence 578889876 37899999999999999986 479999999999999986543222 34555554 478999
Q ss_pred HHHHHHHHcCcEEEeccccccC---CeeeEEEEEEcCCCCEeEEeeeccCCCCCC-------ccc-ceeecCC-CCCcee
Q 031422 78 KMQELAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPG-------YQE-KFYFNPG-DTGFKV 145 (160)
Q Consensus 78 ~l~~~a~~~~i~i~~g~~~~~~---~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~-------~~e-~~~~~~g-~~~~~v 145 (160)
.|+++|++++++|++|..++.+ +++||++++++++|+++..|+|+||+.... +.+ ...+.+| +..+++
T Consensus 81 ~l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~~~~~~~~~~g~g~~~~~~v 160 (294)
T cd07582 81 ALGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHDVWDEYIEVYGYGLDALFPV 160 (294)
T ss_pred HHHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccchhhhhcccCCCccccccee
Confidence 9999999999999999887643 689999999999999999999999975321 112 1234455 333689
Q ss_pred EEeCCeeEEEEeccC
Q 031422 146 FQTKFAKIGVGKGFY 160 (160)
Q Consensus 146 ~~~~~~rig~~ICy~ 160 (160)
++++++|+|++||||
T Consensus 161 ~~~~~~~iG~~ICyD 175 (294)
T cd07582 161 ADTEIGNLGCLACEE 175 (294)
T ss_pred ecCCCceEEEEEeec
Confidence 999999999999998
No 37
>PRK13287 amiF formamidase; Provisional
Probab=99.96 E-value=2.3e-28 Score=185.55 Aligned_cols=147 Identities=22% Similarity=0.214 Sum_probs=119.3
Q ss_pred CcccEEEEEeCCC-----CCCHHHHHHHHHHHHHHHHhC--CCcEEEeccccccccccccchhhHhhhcccCCCChHHHH
Q 031422 6 RREVVVSALQFAC-----TDDVSTNLATAERLVRAAHGK--GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK 78 (160)
Q Consensus 6 ~~~~~va~~Q~~~-----~~~~~~n~~~~~~~i~~a~~~--~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (160)
..+++||++|+++ ..+++.|++++.+.+++|++. ++|||||||++++||....|. ..+.+... +++.++.
T Consensus 11 ~~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~--~~~~a~~~-~g~~~~~ 87 (333)
T PRK13287 11 IEGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKKWT--TEEFLCTV-DGPEVDA 87 (333)
T ss_pred CCceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCccccc--hhhhcccC-CCHHHHH
Confidence 4679999999996 368999999999999999864 899999999999999765431 12333333 3578999
Q ss_pred HHHHHHHcCcEEEeccccccC-C-eeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeC-CeeEEE
Q 031422 79 MQELAKELGVVMPVSFFEEAN-N-AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAKIGV 155 (160)
Q Consensus 79 l~~~a~~~~i~i~~g~~~~~~-~-~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~-~~rig~ 155 (160)
++++|+++++++++|..++.+ + ++|||+++++++|+++.+|+|+||+. +...|.+|+..+++|+++ |.|+|+
T Consensus 88 l~~~a~~~~i~~~~g~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~~-----p~~~~~pG~~~~~v~~~~~g~kiG~ 162 (333)
T PRK13287 88 FAQACKENKVWGVFSIMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPWV-----PVEPWEPGDLGIPVCDGPGGSKLAV 162 (333)
T ss_pred HHHHHHHcCeEEEEeeEEEcCCCCceEEEEEEECCCCcEEEEEeecccCC-----ccccccCCCCCCceEECCCCceEEE
Confidence 999999999999998876543 3 49999999999999999999999743 223578998436899986 569999
Q ss_pred EeccC
Q 031422 156 GKGFY 160 (160)
Q Consensus 156 ~ICy~ 160 (160)
+||||
T Consensus 163 ~ICyD 167 (333)
T PRK13287 163 CICHD 167 (333)
T ss_pred EEEec
Confidence 99998
No 38
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=99.96 E-value=1.6e-27 Score=181.29 Aligned_cols=145 Identities=17% Similarity=0.157 Sum_probs=116.8
Q ss_pred cccEEEEEeCCC-----CCCHHHHHHHHHHHHHHHH--hCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHH
Q 031422 7 REVVVSALQFAC-----TDDVSTNLATAERLVRAAH--GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM 79 (160)
Q Consensus 7 ~~~~va~~Q~~~-----~~~~~~n~~~~~~~i~~a~--~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (160)
..++||++|++. ..++..|++++.+.+++|+ ..++|||||||++++||.... .++.+.+... .+...+.|
T Consensus 11 ~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~--~~~~~~a~~i-~g~~~~~l 87 (345)
T PRK13286 11 DTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDR--QEMYETASTI-PGEETAIF 87 (345)
T ss_pred CceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcCh--HHHHHhcccC-CCHHHHHH
Confidence 569999999984 3578999999999999886 458999999999999965332 2344555554 36788999
Q ss_pred HHHHHHcCcEEEeccc-cc----cCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeC-CeeE
Q 031422 80 QELAKELGVVMPVSFF-EE----ANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAKI 153 (160)
Q Consensus 80 ~~~a~~~~i~i~~g~~-~~----~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~-~~ri 153 (160)
+++|++++++++.|.. ++ .++++||++++|+++|+++.+|+|+|++. +...|.||+. ..+++++ |.|+
T Consensus 88 ~~~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~~-----~~e~~~pG~~-~~v~~~~~G~ki 161 (345)
T PRK13286 88 AEACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPWC-----PIEGWYPGDC-TYVSEGPKGLKI 161 (345)
T ss_pred HHHHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCCc-----hhhceecCCC-CEEEeCCCCcEE
Confidence 9999999999887765 33 13569999999999999999999999754 3346789987 6899986 5699
Q ss_pred EEEeccC
Q 031422 154 GVGKGFY 160 (160)
Q Consensus 154 g~~ICy~ 160 (160)
|++||||
T Consensus 162 G~lIC~D 168 (345)
T PRK13286 162 SLIICDD 168 (345)
T ss_pred EEEEEec
Confidence 9999998
No 39
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=99.95 E-value=6.6e-27 Score=181.49 Aligned_cols=139 Identities=15% Similarity=0.133 Sum_probs=115.0
Q ss_pred cccEEEEEeCCCCC-------CHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHH
Q 031422 7 REVVVSALQFACTD-------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM 79 (160)
Q Consensus 7 ~~~~va~~Q~~~~~-------~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (160)
.++||+++|.++.. +.++|++++.+.+++|++ ++|+|||||++++++.... .....+.+
T Consensus 158 ~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~~~-------------~~~~~~~l 223 (391)
T TIGR00546 158 PTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLENS-------------PQKLADRL 223 (391)
T ss_pred CcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchhhC-------------cHHHHHHH
Confidence 56999999999843 367899999999998876 8999999999998764210 12367889
Q ss_pred HHHHHHcCcEEEeccccccCC---eeeEEEEEEcCCCCEeEEeeeccCCCCCCccc----------------ceeecCCC
Q 031422 80 QELAKELGVVMPVSFFEEANN---AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE----------------KFYFNPGD 140 (160)
Q Consensus 80 ~~~a~~~~i~i~~g~~~~~~~---~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e----------------~~~~~~g~ 140 (160)
+++++++++.+++|..+.+++ ++|||+++++++|+++.+|+|+||.|.+++.+ ..+|.+|+
T Consensus 224 ~~~a~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G~ 303 (391)
T TIGR00546 224 KLLVLSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGP 303 (391)
T ss_pred HHHHHhCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCCC
Confidence 999999999999998866433 79999999999999999999999988765422 24688998
Q ss_pred CCceeEEeCCeeEEEEeccC
Q 031422 141 TGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 141 ~~~~v~~~~~~rig~~ICy~ 160 (160)
. +++++++++|+|++||||
T Consensus 304 ~-~~~~~~~~~~~g~~ICyE 322 (391)
T TIGR00546 304 G-PQVLKLPGGKIAPLICYE 322 (391)
T ss_pred C-CCCCcCCCceeeeeEEee
Confidence 7 789999999999999998
No 40
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.94 E-value=8.6e-27 Score=164.03 Aligned_cols=148 Identities=26% Similarity=0.402 Sum_probs=125.4
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (160)
Q Consensus 9 ~~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (160)
.+||++|+....|..+|++.+.+++++|+.+||++|.|||.+- |.... ..+-.++++++ ++.+++..+++|++++|
T Consensus 16 ~~vAv~Qm~S~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~d--Fi~~n-~~esi~Lae~l-~~k~m~~y~elar~~nI 91 (295)
T KOG0807|consen 16 KRVAVAQMTSSNDLTKNLATCKELISEAAQKGAKLIFLPEAFD--FIGQN-PLESIELAEPL-DGKFMEQYRELARSHNI 91 (295)
T ss_pred ceeEEEeeccchHHHHHHHHHHHHHHHHHHcCCCEEEcchhhh--hhcCC-cccceeccccc-ChHHHHHHHHHHHhcCe
Confidence 6899999999999999999999999999999999999999843 21111 22345567764 68999999999999999
Q ss_pred EEEec-cccccC---CeeeEEEEEEcCCCCEeEEeeeccCC-----CCCCcccceeecCCCCCceeEEeCCeeEEEEecc
Q 031422 89 VMPVS-FFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIP-----DGPGYQEKFYFNPGDTGFKVFQTKFAKIGVGKGF 159 (160)
Q Consensus 89 ~i~~g-~~~~~~---~~~~Ns~~~i~~~G~i~~~y~K~~l~-----~~~~~~e~~~~~~g~~~~~v~~~~~~rig~~ICy 159 (160)
|+.+| ..++.+ .+++|+.++++.+|+++..|+|.||+ +.+.+.|+....||..-.+.++++-||+|..|||
T Consensus 92 wlSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~~pv~tP~GklGlaICY 171 (295)
T KOG0807|consen 92 WLSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIESPVDTPLGKLGLAICY 171 (295)
T ss_pred eEEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccCCccCCcccccceeeee
Confidence 99986 445543 69999999999999999999999995 3456789999999998667799999999999999
Q ss_pred C
Q 031422 160 Y 160 (160)
Q Consensus 160 ~ 160 (160)
|
T Consensus 172 D 172 (295)
T KOG0807|consen 172 D 172 (295)
T ss_pred e
Confidence 8
No 41
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.93 E-value=8.1e-26 Score=165.18 Aligned_cols=154 Identities=26% Similarity=0.316 Sum_probs=129.4
Q ss_pred CcccEEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccc-cchhhHhhhcccCCCChHHHHHHHHH
Q 031422 6 RREVVVSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQ-AQREDFFQRAKPYKDHPTILKMQELA 83 (160)
Q Consensus 6 ~~~~~va~~Q~~~~-~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~a 83 (160)
..++++|++|.... .+...|++.....+++|+++++++|||||.+++||... .+..-..+...+-..++.++.+++++
T Consensus 11 ~~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~sf~py~E~i~~~~~~~ps~~~ls~va 90 (298)
T KOG0806|consen 11 LPNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTESFYPYLEDIPDPGCRDPSRQGLSEVA 90 (298)
T ss_pred ccccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhccccccccccccchhhhCCCcccCChhHHHhHHHH
Confidence 35679999999994 68999999999999999999999999999999999873 32221122222111368999999999
Q ss_pred HHcCcEEEecccccc--CCeeeEEEEEEcCCCCEeEEeeeccCCCCC--C---cccceeecCCCCCceeEEeCCeeEEEE
Q 031422 84 KELGVVMPVSFFEEA--NNAHYNSIAIIDADGSDLGLYRKSHIPDGP--G---YQEKFYFNPGDTGFKVFQTKFAKIGVG 156 (160)
Q Consensus 84 ~~~~i~i~~g~~~~~--~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~--~---~~e~~~~~~g~~~~~v~~~~~~rig~~ 156 (160)
+++++++++|.++.. .++.||+..+++++|..+..|||.||++.. . |.|...|.+|.. +.+++...+|+|+.
T Consensus 91 ~~~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~-f~~~~~~~gkfGi~ 169 (298)
T KOG0806|consen 91 ERLSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQ-FTVVDTSYGKFGIF 169 (298)
T ss_pred hhceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcC-CCcccCCCCceEEE
Confidence 999999999988764 489999999999999999999999998642 2 678889999998 79999999999999
Q ss_pred eccC
Q 031422 157 KGFY 160 (160)
Q Consensus 157 ICy~ 160 (160)
||||
T Consensus 170 IC~D 173 (298)
T KOG0806|consen 170 ICFD 173 (298)
T ss_pred EEec
Confidence 9998
No 42
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=99.92 E-value=8.8e-25 Score=174.50 Aligned_cols=139 Identities=19% Similarity=0.147 Sum_probs=110.6
Q ss_pred cccEEEEEeCCCCC-------CHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHH
Q 031422 7 REVVVSALQFACTD-------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM 79 (160)
Q Consensus 7 ~~~~va~~Q~~~~~-------~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (160)
.++||+++|.++.. +.++|++++.+.++++ ++++|+|||||++++++. .+ ..+...+.+
T Consensus 218 ~~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~~-~~~~dlvV~PE~a~p~~~-~~------------~~~~~~~~l 283 (505)
T PRK00302 218 PALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPA-LGPADLIIWPETAIPFLL-ED------------LPQAFLKAL 283 (505)
T ss_pred CCcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhcc-cCCCCEEEeCCccccccc-cc------------ccHHHHHHH
Confidence 46999999999843 4567888888888844 578999999999886542 10 123567789
Q ss_pred HHHHHHcCcEEEeccccccC---C-eeeEEEEEEcCCCCEeEEeeeccCCCCCCccc---------------ceeecCCC
Q 031422 80 QELAKELGVVMPVSFFEEAN---N-AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE---------------KFYFNPGD 140 (160)
Q Consensus 80 ~~~a~~~~i~i~~g~~~~~~---~-~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e---------------~~~~~~g~ 140 (160)
+++++++++.+++|..+..+ + ++||+++++++ |+++.+|+|+||+|.+++.+ ..+|.+|+
T Consensus 284 ~~~a~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~ 362 (505)
T PRK00302 284 DDLAREKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGP 362 (505)
T ss_pred HHHHHhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCC
Confidence 99999999999999886542 3 69999999988 88899999999988765421 12688998
Q ss_pred CCceeEEeCCeeEEEEeccC
Q 031422 141 TGFKVFQTKFAKIGVGKGFY 160 (160)
Q Consensus 141 ~~~~v~~~~~~rig~~ICy~ 160 (160)
...++++++++|+|++||||
T Consensus 363 ~~~~v~~~~~~~ig~~ICyE 382 (505)
T PRK00302 363 YVQPPLLAKGLKLAPLICYE 382 (505)
T ss_pred CCCCCcccCCceEEEEEeeh
Confidence 43689999999999999998
No 43
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.92 E-value=5.4e-24 Score=165.82 Aligned_cols=133 Identities=14% Similarity=0.117 Sum_probs=106.1
Q ss_pred cEEEEEeCCCCCC-------HHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHH
Q 031422 9 VVVSALQFACTDD-------VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE 81 (160)
Q Consensus 9 ~~va~~Q~~~~~~-------~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (160)
.+|+++|+|+.++ .+.+.++..+.+++|.+.++|+|||||++++.+... .+...+.+++
T Consensus 195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~~--------------~~~~~~~l~~ 260 (418)
T PRK12291 195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALNN--------------SPILLDKLKE 260 (418)
T ss_pred CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchhh--------------CHHHHHHHHH
Confidence 4999999998433 357788888999888888999999999988644210 1245666777
Q ss_pred HHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCc----------------ccceeecCCCCCcee
Q 031422 82 LAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGY----------------QEKFYFNPGDTGFKV 145 (160)
Q Consensus 82 ~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~----------------~e~~~~~~g~~~~~v 145 (160)
.+ .++.+++|.+..+++++|||++++++ |+ ..+|+|+||+|.+++ .+..+|++|+. .++
T Consensus 261 ~~--~~~~ii~G~~~~~~~~~yNS~~vi~~-G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~-~~~ 335 (418)
T PRK12291 261 LS--HKITIITGALRVEDGHIYNSTYIFSK-GN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASK-FSD 335 (418)
T ss_pred hc--cCCcEEEeeeeccCCceEEEEEEECC-CC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCC-Ccc
Confidence 64 57899999887766789999999974 77 689999999877542 34557899986 689
Q ss_pred EEeCCeeEEEEeccC
Q 031422 146 FQTKFAKIGVGKGFY 160 (160)
Q Consensus 146 ~~~~~~rig~~ICy~ 160 (160)
+++++.|+|++||||
T Consensus 336 ~~~~g~~ig~lICYE 350 (418)
T PRK12291 336 FTLDGVKFRNAICYE 350 (418)
T ss_pred eeeCCeEEEEEEeee
Confidence 999999999999998
No 44
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.91 E-value=2.5e-23 Score=148.46 Aligned_cols=153 Identities=28% Similarity=0.431 Sum_probs=133.8
Q ss_pred cccEEEEEeCCC--C--CC----HHHHHHHHHHHHHHHHhCCCcEEEeccccccccc-cccchhhHhhhcccCCCChHHH
Q 031422 7 REVVVSALQFAC--T--DD----VSTNLATAERLVRAAHGKGANIILIQELFEGYYF-CQAQREDFFQRAKPYKDHPTIL 77 (160)
Q Consensus 7 ~~~~va~~Q~~~--~--~~----~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~ 77 (160)
+-++|+++|-.+ + .. .+..-+++...++.|+..|+.+|+|.|.|..+|. |...+-.|-+++++..+++..+
T Consensus 72 r~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~~gptt~ 151 (387)
T KOG0808|consen 72 RVVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVDTGPTTK 151 (387)
T ss_pred cEEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccccCchHH
Confidence 347899999987 2 22 3445567778888888899999999999999874 5555666889999988899999
Q ss_pred HHHHHHHHcCcEEEecccccc---CCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCCCceeEEeCCeeEE
Q 031422 78 KMQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIG 154 (160)
Q Consensus 78 ~l~~~a~~~~i~i~~g~~~~~---~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~~~~v~~~~~~rig 154 (160)
.++++|+++++.|+....+++ ++.++|++++|+.+|.++++.+|.|+|.-+.|.|+.++..|+.+-|||++.++|||
T Consensus 152 flqklakkhdmvivspilerd~ehgdvlwntavvisn~g~vigk~rknhiprvgdfnestyymeg~lghpvfet~fgria 231 (387)
T KOG0808|consen 152 FLQKLAKKHDMVIVSPILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHIPRVGDFNESTYYMEGDLGHPVFETVFGRIA 231 (387)
T ss_pred HHHHHHhhCCeEEEehhhhcccccCceeeeeeEEEccCCceecccccccCCcccccCcceeEeecCCCCceeeeecceEE
Confidence 999999999999999988874 46799999999999999999999999999999999999999988899999999999
Q ss_pred EEecc
Q 031422 155 VGKGF 159 (160)
Q Consensus 155 ~~ICy 159 (160)
+.|||
T Consensus 232 vnicy 236 (387)
T KOG0808|consen 232 VNICY 236 (387)
T ss_pred EEeec
Confidence 99999
No 45
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.91 E-value=1.7e-23 Score=148.09 Aligned_cols=149 Identities=26% Similarity=0.374 Sum_probs=126.8
Q ss_pred cccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccc------------hhh---HhhhcccC
Q 031422 7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ------------RED---FFQRAKPY 70 (160)
Q Consensus 7 ~~~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~------------~~~---~~~~~~~~ 70 (160)
...||+++|... ..|....++++++.+.+|+++|+.||||||.++.||+.+.. +++ +...+...
T Consensus 16 s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AIev 95 (337)
T KOG0805|consen 16 SIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHASAIEV 95 (337)
T ss_pred cceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHHHhhcC
Confidence 457999999987 57888899999999999999999999999999999986531 333 34444444
Q ss_pred CCChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCC-CceeEEeC
Q 031422 71 KDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT-GFKVFQTK 149 (160)
Q Consensus 71 ~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~-~~~v~~~~ 149 (160)
.++..++|..+|+++++.+++|..++++..+|.++++++|+|..++.+||..+.. .|+-.|..|+. .+|||+++
T Consensus 96 -~gpEv~~l~~la~~~~v~lv~G~iEreg~TLYCt~~f~~p~g~~lGKHRKlmPTa----lERciWGqGDGSTiPV~dT~ 170 (337)
T KOG0805|consen 96 -PGPEVERLAELAKKNNVYLVMGAIEREGYTLYCTVLFFSPQGQFLGKHRKLMPTA----LERCIWGQGDGSTIPVYDTP 170 (337)
T ss_pred -CChHHHHHHHHhhcCCeEEEEEEEeccccEEEEEEEEECCCccccccccccccch----hhheeeccCCCcccceeecc
Confidence 4688999999999999999999999999999999999999999999999996554 57766666542 38999999
Q ss_pred CeeEEEEeccC
Q 031422 150 FAKIGVGKGFY 160 (160)
Q Consensus 150 ~~rig~~ICy~ 160 (160)
-+|||.+|||+
T Consensus 171 iGKIG~AICWE 181 (337)
T KOG0805|consen 171 IGKIGAAICWE 181 (337)
T ss_pred cchhceeeecc
Confidence 99999999995
No 46
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.86 E-value=9.3e-21 Score=146.07 Aligned_cols=135 Identities=14% Similarity=0.007 Sum_probs=100.1
Q ss_pred ccEEEEEeCCCCCC--H---HHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHH
Q 031422 8 EVVVSALQFACTDD--V---STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQEL 82 (160)
Q Consensus 8 ~~~va~~Q~~~~~~--~---~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (160)
+.++-.+++++.++ . ..+..++.+.+++|.+.++|+|||||+++++|.... . +.+++.
T Consensus 185 p~~w~~v~t~~~~~~~~~~~~~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~~--------------~---~~~~~~ 247 (388)
T PRK13825 185 PAGWVGVDTQLGRSLGRDASLERRRELIATVRAAAAAGARVVVLPESALGFWTPTT--------------E---RLWRES 247 (388)
T ss_pred CCCeEEEECCcccccCchhhHHHHHHHHHHHHhhcccCCCEEEccCcccccccccc--------------c---HHHHHH
Confidence 34677788877322 1 233446666777788889999999999998764210 1 123555
Q ss_pred HHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcc-------cceeecCCCCCceeEEeCCeeEEE
Q 031422 83 AKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ-------EKFYFNPGDTGFKVFQTKFAKIGV 155 (160)
Q Consensus 83 a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~-------e~~~~~~g~~~~~v~~~~~~rig~ 155 (160)
++++++.+++|..+++++++||++++++++|.. ..|+|+||.+.+++. |..++.+|....+++++++.|+|+
T Consensus 248 l~~~~i~II~G~~~~~~~~~yNsa~v~~~~G~~-~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~~~~vf~l~g~rvg~ 326 (388)
T PRK13825 248 LRGSDVTVIAGAAVVDPGGYDNVLVAISAGGGR-ILYRERMPVPVSMWQPWRPWTGQGGGARAHFFANPVVEIDGRRAAP 326 (388)
T ss_pred HHhCCCeEEEEeeecCCCCceEEEEEEeCCCCe-eeEeeeeCcCccccCchHHhhccccCCCCCCCCCCceeeCCeEEEE
Confidence 688999999998887788899999999988864 499999998765432 556677774223689999999999
Q ss_pred EeccC
Q 031422 156 GKGFY 160 (160)
Q Consensus 156 ~ICy~ 160 (160)
+||||
T Consensus 327 lICYE 331 (388)
T PRK13825 327 LICYE 331 (388)
T ss_pred EEeee
Confidence 99998
No 47
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=1.5e-17 Score=132.36 Aligned_cols=139 Identities=16% Similarity=0.160 Sum_probs=97.0
Q ss_pred cccEEEEEeCCCCC----CHHHHHHHHHHHHH---HHH--hCCCcEEEeccccccccccccchhhHhhhcccCCCChHHH
Q 031422 7 REVVVSALQFACTD----DVSTNLATAERLVR---AAH--GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTIL 77 (160)
Q Consensus 7 ~~~~va~~Q~~~~~----~~~~n~~~~~~~i~---~a~--~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 77 (160)
..++|+++|.|+++ |.+.....+...+. .+. ..++|+|||||.+++-.. .+ ......
T Consensus 226 ~~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p~~~--------~~------~~~~~~ 291 (518)
T COG0815 226 PTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALPFDL--------TR------HPDALA 291 (518)
T ss_pred CceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccccch--------hh------cchHHH
Confidence 45899999999953 33333333333232 222 379999999999885211 11 123356
Q ss_pred HHHHHHHHcCcEEEeccccc--cCC--eeeEEEEEEcCCCCEeEEeeeccCCCCCCccc---------------ceeecC
Q 031422 78 KMQELAKELGVVMPVSFFEE--ANN--AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE---------------KFYFNP 138 (160)
Q Consensus 78 ~l~~~a~~~~i~i~~g~~~~--~~~--~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e---------------~~~~~~ 138 (160)
++.+.+++.+..+++|.... .++ ++|||+++++++|++..+|+|+||.|.++|.. ...|.+
T Consensus 292 ~~~~~~~~~~~~~iiG~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~~~~~~~~~f~~ 371 (518)
T COG0815 292 RLAEALQRVGAPLLIGTDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFFLNLPMSDFSR 371 (518)
T ss_pred HHHHHHHhcCCcEEEeccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhhhhccccccccC
Confidence 78888889999999994332 233 48999999999989999999999998877642 235566
Q ss_pred CCCCceeEEeCC-eeEEEEeccC
Q 031422 139 GDTGFKVFQTKF-AKIGVGKGFY 160 (160)
Q Consensus 139 g~~~~~v~~~~~-~rig~~ICy~ 160 (160)
|+. ..++.+++ .|+++.||||
T Consensus 372 G~~-~~v~~~~~~~~~~~~ICYE 393 (518)
T COG0815 372 GPG-PQVLLLAGGPKIAPLICYE 393 (518)
T ss_pred CCC-CcceecCCCceeeceeeeh
Confidence 876 46666665 6699999997
No 48
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=99.51 E-value=1.3e-14 Score=112.06 Aligned_cols=130 Identities=19% Similarity=0.234 Sum_probs=109.1
Q ss_pred CCcccEEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHH
Q 031422 5 KRREVVVSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83 (160)
Q Consensus 5 ~~~~~~va~~Q~~~~-~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 83 (160)
|++.++||.++.|-+ .|.+.|.++|.+.+++|++.||.+-+-||+-++||.|.+- +++....+ ...+.|.++.
T Consensus 1 m~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~DH---f~E~Dt~~---HswE~l~~l~ 74 (706)
T KOG2303|consen 1 MGRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCEDH---FLESDTLL---HSWEMLAELV 74 (706)
T ss_pred CCceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHHh---hccchHHH---HHHHHHHHHH
Confidence 678899999999997 6999999999999999999999999999999999998752 23322221 3344455544
Q ss_pred ---HHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCCCCcccceeecCCCC
Q 031422 84 ---KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT 141 (160)
Q Consensus 84 ---~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~e~~~~~~g~~ 141 (160)
...++.+.+|+|....+..||+.+++ -+|+|+.+..|+.|.+.+.|.|.+||.|+..
T Consensus 75 ~~~~~~~il~diGmPv~hr~~ryNCrv~~-~n~kil~IRpKm~lanDgnyRE~RwFt~W~~ 134 (706)
T KOG2303|consen 75 ESPVTQDILCDIGMPVMHRNVRYNCRVLF-LNRKILLIRPKMWLANDGNYRESRWFTPWTR 134 (706)
T ss_pred cCCCCCCeeEecCCchhhhhhhhccceee-cCCeEEEEcccceeccCCCchhhcccccccc
Confidence 44578888999999999999999999 6899999999999999999999999998764
No 49
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=92.61 E-value=1.8 Score=32.62 Aligned_cols=70 Identities=17% Similarity=0.112 Sum_probs=44.2
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cC-CeeeEEEEEE
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-AN-NAHYNSIAII 109 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~-~~~~Ns~~~i 109 (160)
..+..+.+|+|+++.|-.+.... .......++..|.+++++++...... ++ ..++=.+.++
T Consensus 161 ~~r~la~~GAdill~ps~~~~~~-----------------~~~w~~~~~aRA~En~~~vv~aN~~G~~~~~~~~G~S~iv 223 (291)
T cd07565 161 IARECAYKGAELIIRIQGYMYPA-----------------KDQWIITNKANAWCNLMYTASVNLAGFDGVFSYFGESMIV 223 (291)
T ss_pred HHHHHHHCCCeEEEECCcCCCCc-----------------chHHHHHHHHHHHhcCcEEEEecccccCCCceeeeeeEEE
Confidence 44555568999999997543110 01333456778889999988532222 22 2455667888
Q ss_pred cCCCCEeEE
Q 031422 110 DADGSDLGL 118 (160)
Q Consensus 110 ~~~G~i~~~ 118 (160)
+|+|+++..
T Consensus 224 dP~G~ila~ 232 (291)
T cd07565 224 NFDGRTLGE 232 (291)
T ss_pred CCCCCEEEe
Confidence 999998643
No 50
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=90.80 E-value=2.1 Score=32.53 Aligned_cols=71 Identities=15% Similarity=0.077 Sum_probs=44.6
Q ss_pred HHHHHHhC-CCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEc
Q 031422 32 LVRAAHGK-GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIID 110 (160)
Q Consensus 32 ~i~~a~~~-~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~ 110 (160)
..+..+.+ |+|+++.|=.|..... .......++..|.+++++++....... ...+-.+.+++
T Consensus 188 ~~r~la~~~GAdlil~paaw~~~~~----------------~~~w~~l~~arA~eN~~~vi~~N~~g~-~~~~G~S~iv~ 250 (299)
T cd07567 188 PALELVKKLGVDDIVFPTAWFSELP----------------FLTAVQIQQAWAYANGVNLLAANYNNP-SAGMTGSGIYA 250 (299)
T ss_pred HHHHHHHhCCCCEEEECCccCCCCC----------------chhHHHHHHHHHHHcCceEEEecCCCC-cCccccceEEc
Confidence 34444556 9999999965432111 012334567889999999987433322 22346678888
Q ss_pred CC-CCEeEEe
Q 031422 111 AD-GSDLGLY 119 (160)
Q Consensus 111 ~~-G~i~~~y 119 (160)
|. |+++...
T Consensus 251 P~~G~v~a~~ 260 (299)
T cd07567 251 GRSGALVYHY 260 (299)
T ss_pred CCCCcEEEEe
Confidence 99 9988654
No 51
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=90.80 E-value=3.5 Score=30.00 Aligned_cols=68 Identities=19% Similarity=0.131 Sum_probs=40.9
Q ss_pred HHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cCC-eeeEEEEEEc
Q 031422 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANN-AHYNSIAIID 110 (160)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~~-~~~Ns~~~i~ 110 (160)
.+..+.+|+|+|+.|=.+...+. ......++..|.+++++++...... .++ .+.=.+.+++
T Consensus 151 ~~~~~~~gadii~~p~~~~~~~~-----------------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~i~~ 213 (254)
T cd07576 151 VRALALAGADLVLVPTALMEPYG-----------------FVARTLVPARAFENQIFVAYANRCGAEDGLTYVGLSSIAG 213 (254)
T ss_pred HHHHHHCCCCEEEECCccCCCcc-----------------hhhhhhhHHHHHhCCCEEEEEcccCCCCCceeeeeeEEEC
Confidence 44455679999999854332111 1122345667889999987643322 222 3344568888
Q ss_pred CCCCEeE
Q 031422 111 ADGSDLG 117 (160)
Q Consensus 111 ~~G~i~~ 117 (160)
|+|+++.
T Consensus 214 p~G~il~ 220 (254)
T cd07576 214 PDGTVLA 220 (254)
T ss_pred CCCCEeE
Confidence 9998763
No 52
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=90.09 E-value=4.2 Score=29.72 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=40.8
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEec-cccccCCeee-EEEEEE
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS-FFEEANNAHY-NSIAII 109 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g-~~~~~~~~~~-Ns~~~i 109 (160)
..+.++.+|+|+++.|=.+... . ........+..|.+++++++.. ..-..++..+ =.+.++
T Consensus 154 ~~r~~~~~gadll~~ps~~~~~--------------~---~~~~~~~~~~rA~En~~~vv~~n~~g~~~~~~~~G~S~ii 216 (258)
T cd07584 154 VARILTLKGAEVIFCPSAWREQ--------------D---ADIWDINLPARALENTVFVAAVNRVGNEGDLVLFGKSKIL 216 (258)
T ss_pred HHHHHHHCCCcEEEECCccCCC--------------C---chHHHHHHHHHHHhCCcEEEEECccccCCCceecceeEEE
Confidence 4556667899999999532210 0 0122223456678899998852 2222233333 357788
Q ss_pred cCCCCEeE
Q 031422 110 DADGSDLG 117 (160)
Q Consensus 110 ~~~G~i~~ 117 (160)
+++|+++.
T Consensus 217 ~p~G~il~ 224 (258)
T cd07584 217 NPRGQVLA 224 (258)
T ss_pred CCCCceee
Confidence 89999763
No 53
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=88.67 E-value=2.8 Score=30.76 Aligned_cols=69 Identities=22% Similarity=0.155 Sum_probs=40.4
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cC-Ce-eeEEEEE
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-AN-NA-HYNSIAI 108 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~-~~-~~Ns~~~ 108 (160)
..+.++.+|+|+|+.|=.+..... ...+...++..|.+++++++...... .+ +. .+=.+.+
T Consensus 161 ~~r~~~~~gadli~~p~~~~~~~~----------------~~~~~~~~~~rA~e~~~~vv~~n~~G~~~~~~~~~G~S~i 224 (265)
T cd07572 161 LARALARQGADILTVPAAFTMTTG----------------PAHWELLLRARAIENQCYVVAAAQAGDHEAGRETYGHSMI 224 (265)
T ss_pred HHHHHHHCCCCEEEECCCCCCCcc----------------hHHHHHHHHHHHHhcCCEEEEEcccccCCCCCeecceeEE
Confidence 455666789999999953321100 01222334666888999987743322 22 22 2335777
Q ss_pred EcCCCCEe
Q 031422 109 IDADGSDL 116 (160)
Q Consensus 109 i~~~G~i~ 116 (160)
++|+|+++
T Consensus 225 ~~p~G~il 232 (265)
T cd07572 225 VDPWGEVL 232 (265)
T ss_pred ECCCcHHH
Confidence 88999865
No 54
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=88.35 E-value=6.1 Score=30.69 Aligned_cols=70 Identities=21% Similarity=0.202 Sum_probs=44.1
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cC-CeeeEEEEEE
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-AN-NAHYNSIAII 109 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~-~~~~Ns~~~i 109 (160)
..+..+.+|+|+|+-|-.+..+. .......++..|.+++++++...... ++ -.++=.+.++
T Consensus 174 ~~R~la~~GAelii~psa~~~~~-----------------~~~~~~~~rarA~eN~~yVv~aN~~G~~~~~~~~G~S~Iv 236 (345)
T PRK13286 174 IWRDCAMKGAELIVRCQGYMYPA-----------------KEQQVLVAKAMAWANNCYVAVANAAGFDGVYSYFGHSAII 236 (345)
T ss_pred HHHHHHHcCCeEEEEccccCCCc-----------------hHHHHHHHHHHHHHCCCEEEEEecccccCCceeeeeEEEE
Confidence 45556678999999885432110 01233456777889999987743322 22 2345668889
Q ss_pred cCCCCEeEE
Q 031422 110 DADGSDLGL 118 (160)
Q Consensus 110 ~~~G~i~~~ 118 (160)
+++|+++..
T Consensus 237 dp~G~vla~ 245 (345)
T PRK13286 237 GFDGRTLGE 245 (345)
T ss_pred CCCCcEEEe
Confidence 999998644
No 55
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=88.19 E-value=5.5 Score=29.14 Aligned_cols=73 Identities=19% Similarity=0.075 Sum_probs=42.0
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cCC-eeeEEEEEE
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANN-AHYNSIAII 109 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~~-~~~Ns~~~i 109 (160)
..+..+.+|+|+|+.|=.+....... ....+...++..|.+++++++...... .++ .+.=.++++
T Consensus 148 ~~r~l~~~gadlil~p~~~~~~~~~~-------------~~~~~~~~~~~rA~e~~~~vv~~n~~g~~~~~~~~G~S~i~ 214 (261)
T cd07585 148 NVRATALLGAEILFAPHATPGTTSPK-------------GREWWMRWLPARAYDNGVFVAACNGVGRDGGEVFPGGAMIL 214 (261)
T ss_pred HHHHHHHCCCCEEEECCccCCCCCcc-------------hHHHHHHHhHHHHhhcCeEEEEecccccCCCceecceEEEE
Confidence 34556678999999995433211000 001233345677888999987632222 222 233456888
Q ss_pred cCCCCEeE
Q 031422 110 DADGSDLG 117 (160)
Q Consensus 110 ~~~G~i~~ 117 (160)
+|+|+++.
T Consensus 215 ~p~G~v~~ 222 (261)
T cd07585 215 DPYGRVLA 222 (261)
T ss_pred CCCCCEEe
Confidence 89998764
No 56
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=88.17 E-value=3.6 Score=32.18 Aligned_cols=67 Identities=15% Similarity=-0.011 Sum_probs=40.6
Q ss_pred HHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-c--------------
Q 031422 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A-------------- 98 (160)
Q Consensus 34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~-------------- 98 (160)
+..+.+|+|+|+.|=.+..... ...+...++..|.+++++++...... +
T Consensus 235 r~la~~GAdiil~Psa~~~~~~----------------~~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~ 298 (363)
T cd07587 235 LMYGLNGAEIVFNPSATVGALS----------------EPMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPA 298 (363)
T ss_pred HHHHHcCCcEEEECCCcCCCCc----------------hHHHHHHHHHHHHhcCcEEEEecccccccccccccccccccc
Confidence 3445679999999965421100 01223446677888999987532211 1
Q ss_pred ---CCeeeEEEEEEcCCCCEe
Q 031422 99 ---NNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 99 ---~~~~~Ns~~~i~~~G~i~ 116 (160)
...++-.+++++|+|+++
T Consensus 299 ~~~~~~f~G~S~Ii~P~G~il 319 (363)
T cd07587 299 HKDFGHFYGSSYVAAPDGSRT 319 (363)
T ss_pred ccccccccceeEEECCCCCCc
Confidence 023566789999999864
No 57
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=88.11 E-value=1.1 Score=32.87 Aligned_cols=71 Identities=14% Similarity=0.070 Sum_probs=50.0
Q ss_pred HhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc---cCCeeeEEEEEEcCCC
Q 031422 37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE---ANNAHYNSIAIIDADG 113 (160)
Q Consensus 37 ~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~---~~~~~~Ns~~~i~~~G 113 (160)
.+.||+++.+|-.|..--. ...+--.|+..|-+.+++++...-.. ..+.-|--+++++|.|
T Consensus 183 R~~gA~iLtyPSAFT~~TG----------------~AHWEiLlRARAietQCYVvaaaQ~G~HneKR~SyGhSMiVDPWG 246 (295)
T KOG0807|consen 183 RKMGAQILTYPSAFTIKTG----------------EAHWEILLRARAIETQCYVVAAAQVGKHNEKRESYGHSMIVDPWG 246 (295)
T ss_pred HHcCCcEEeccchhhhccc----------------HHHHHHHHHHHHhhcceEEEehhhcccccchhhccCcceEEcchh
Confidence 3679999999987652110 01222346777889999998854432 3456788899999999
Q ss_pred CEeEEeeecc
Q 031422 114 SDLGLYRKSH 123 (160)
Q Consensus 114 ~i~~~y~K~~ 123 (160)
.+++.+....
T Consensus 247 tVva~~se~~ 256 (295)
T KOG0807|consen 247 TVVARCSERT 256 (295)
T ss_pred hhheecCCCC
Confidence 9999888764
No 58
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=87.31 E-value=6.9 Score=29.14 Aligned_cols=71 Identities=17% Similarity=0.010 Sum_probs=40.7
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-c----CCeeeEEE
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A----NNAHYNSI 106 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~----~~~~~Ns~ 106 (160)
..+..+.+|+|+++.|=.+..++. .......++..|.+++++++...... . ...++-.+
T Consensus 170 ~~r~la~~Ga~li~~ps~~~~~~~----------------~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~~~~G~S 233 (287)
T cd07568 170 GWRALGLNGAEIVFNPSATVAGLS----------------EYLWKLEQPAAAVANGYFVGAINRVGTEAPWNIGEFYGSS 233 (287)
T ss_pred HHHHHHHCCCeEEEECCcCCCCCc----------------hhhhHHHHHHHHHHCCcEEEEeccccccCCCccceEecee
Confidence 345556789999999854332111 01111234556778888887422111 1 12445667
Q ss_pred EEEcCCCCEeEE
Q 031422 107 AIIDADGSDLGL 118 (160)
Q Consensus 107 ~~i~~~G~i~~~ 118 (160)
.+++|+|+++..
T Consensus 234 ~ii~p~G~il~~ 245 (287)
T cd07568 234 YFVDPRGQFVAS 245 (287)
T ss_pred EEECCCceEEEe
Confidence 888999998643
No 59
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=87.19 E-value=3.5 Score=30.36 Aligned_cols=57 Identities=14% Similarity=-0.023 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 21 DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 21 ~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
+.....+.+.+..+...+++..+++|||..-+... . -.++..-.-.+|.+.++.|+-
T Consensus 120 ~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs~~g------------~---l~~Fk~Ga~~lA~~~~~PIvP 176 (245)
T PRK15018 120 NRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGR------------G---LLPFKTGAFHAAIAAGVPIIP 176 (245)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCC------------C---CCCccHHHHHHHHHcCCCEEE
Confidence 44555666777777777778899999997554211 0 124556667778888888753
No 60
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=85.91 E-value=10 Score=27.91 Aligned_cols=73 Identities=14% Similarity=0.090 Sum_probs=41.2
Q ss_pred HHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe-ccccccCCe-eeEEEEEEcC
Q 031422 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFFEEANNA-HYNSIAIIDA 111 (160)
Q Consensus 34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~-g~~~~~~~~-~~Ns~~~i~~ 111 (160)
+..+.+|+|+|+.|=.+....... .. ........++..|.+++++++. +..-.+++. ++=.+.+++|
T Consensus 154 r~~~~~ga~li~~ps~~~~~~~~~---------~~--~~~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p 222 (268)
T cd07580 154 RLLALQGADIVCVPTNWVPMPRPP---------EG--GPPMANILAMAAAHSNGLFIACADRVGTERGQPFIGQSLIVGP 222 (268)
T ss_pred HHHHHcCCCEEEEcCcccccCCcc---------cc--cCcHHHHhhHHHHhhCCcEEEEEeeeeeccCceEeeeeEEECC
Confidence 445667999999997554221100 00 0011222345567789999876 332223333 3345689999
Q ss_pred CCCEeE
Q 031422 112 DGSDLG 117 (160)
Q Consensus 112 ~G~i~~ 117 (160)
+|+++.
T Consensus 223 ~G~~~~ 228 (268)
T cd07580 223 DGWPLA 228 (268)
T ss_pred CCCeee
Confidence 999763
No 61
>PLN00202 beta-ureidopropionase
Probab=85.15 E-value=7.2 Score=31.01 Aligned_cols=68 Identities=15% Similarity=-0.024 Sum_probs=41.3
Q ss_pred HHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-c----------C--
Q 031422 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A----------N-- 99 (160)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~----------~-- 99 (160)
.+..+.+|+|+|+.|=.+..... ...+...++..|.+++++++...... + +
T Consensus 255 ~r~la~~GAdiIl~Psa~~~~~~----------------~~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~~ 318 (405)
T PLN00202 255 WLAFGLNGAEIVFNPSATVGDLS----------------EPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKP 318 (405)
T ss_pred HHHHHHCCCcEEEECCCCCCccC----------------HHHHHHHHHHHHHhcCCEEEEeccccccccccccccccccc
Confidence 33345679999999965431100 01233456777888999987632211 1 1
Q ss_pred -----CeeeEEEEEEcCCCCEe
Q 031422 100 -----NAHYNSIAIIDADGSDL 116 (160)
Q Consensus 100 -----~~~~Ns~~~i~~~G~i~ 116 (160)
..++=.+++++|+|+++
T Consensus 319 ~~~~~~~f~G~S~Iv~P~G~vl 340 (405)
T PLN00202 319 QHKDFGHFYGSSHFSAPDASCT 340 (405)
T ss_pred cccccccccceeEEEcCCCCEe
Confidence 23567788999999875
No 62
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=85.10 E-value=7.5 Score=28.29 Aligned_cols=70 Identities=17% Similarity=0.072 Sum_probs=41.0
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEec-cccccC-CeeeEEEEEE
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS-FFEEAN-NAHYNSIAII 109 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g-~~~~~~-~~~~Ns~~~i 109 (160)
..+..+.+|+|+|+.|=.+... . ...+...++..|.+++++++.. ..-..+ ..++=.+.++
T Consensus 151 ~~r~~~~~ga~ll~~ps~~~~~-~----------------~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~G~S~ii 213 (253)
T cd07583 151 LFRKLALEGAEILFVPAEWPAA-R----------------IEHWRTLLRARAIENQAFVVACNRVGTDGGNEFGGHSMVI 213 (253)
T ss_pred HHHHHHHcCCcEEEECCCCCCC-c----------------hHHHHHHHHHHHHHhCCEEEEEcCcccCCCceecceeEEE
Confidence 4566667899999999543210 0 0122223456788889988753 222222 2334456778
Q ss_pred cCCCCEeEE
Q 031422 110 DADGSDLGL 118 (160)
Q Consensus 110 ~~~G~i~~~ 118 (160)
+|+|+++..
T Consensus 214 ~p~G~il~~ 222 (253)
T cd07583 214 DPWGEVLAE 222 (253)
T ss_pred CCCchhhee
Confidence 899987643
No 63
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=85.05 E-value=12 Score=27.54 Aligned_cols=75 Identities=17% Similarity=0.054 Sum_probs=42.8
Q ss_pred HHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccc-c-----cCCeeeEEE
Q 031422 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-E-----ANNAHYNSI 106 (160)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~-----~~~~~~Ns~ 106 (160)
.+..+.+|+|+|+.|=.+..... .. ... ....+...++..|.+++++++..... . .+..++=.+
T Consensus 159 ~r~~a~~ga~lil~ps~~~~~~~-~~--------~~~-~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~G~S 228 (279)
T TIGR03381 159 ARAMALMGAEVLFYPTAIGSEPH-DP--------DLD-SRDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSS 228 (279)
T ss_pred HHHHHHcCCCEEEecCccCCCCc-cc--------ccc-cHHHHHHHHHHHHHhCCCeEEEEecccccCCCCCcceEeeeE
Confidence 45556789999999865432110 00 000 00123344556688899998763222 1 123455667
Q ss_pred EEEcCCCCEeE
Q 031422 107 AIIDADGSDLG 117 (160)
Q Consensus 107 ~~i~~~G~i~~ 117 (160)
.+++|+|+++.
T Consensus 229 ~i~~p~G~il~ 239 (279)
T TIGR03381 229 FIADHTGELVA 239 (279)
T ss_pred EEECCCCcEee
Confidence 89999999874
No 64
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=85.04 E-value=9.3 Score=27.56 Aligned_cols=68 Identities=26% Similarity=0.228 Sum_probs=43.6
Q ss_pred HHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccc-cc-CCeeeEEEEEEc
Q 031422 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA-NNAHYNSIAIID 110 (160)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~-~~~~~Ns~~~i~ 110 (160)
.+.+..+|+|+|+.|=...... ........+..|.+++++++..... .. +...+-.+.+++
T Consensus 152 ~~~~~~~g~dli~~ps~~~~~~-----------------~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~G~S~i~~ 214 (253)
T cd07197 152 ARELALKGADIILVPAAWPTAR-----------------REHWELLLRARAIENGVYVVAANRVGEEGGLEFAGGSMIVD 214 (253)
T ss_pred HHHHHHCCCcEEEECCcCCCcc-----------------hHHHHHHHHHHHHHhCCeEEEecCCCCCCCccccceeEEEC
Confidence 3445677999999998644210 0244456777889999998774332 22 234445678888
Q ss_pred CCCCEeE
Q 031422 111 ADGSDLG 117 (160)
Q Consensus 111 ~~G~i~~ 117 (160)
|.|+++.
T Consensus 215 p~G~~~~ 221 (253)
T cd07197 215 PDGEVLA 221 (253)
T ss_pred CCCceee
Confidence 9998763
No 65
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=85.00 E-value=9.3 Score=28.07 Aligned_cols=75 Identities=13% Similarity=0.042 Sum_probs=43.2
Q ss_pred HHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cC-CeeeEEEEEEcC
Q 031422 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-AN-NAHYNSIAIIDA 111 (160)
Q Consensus 34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~-~~~~Ns~~~i~~ 111 (160)
+..+.+|+|+|+.|=.+..... . ............++..|.+++++++...... .+ ..++-.+.+++|
T Consensus 153 ~~~~~~ga~lil~ps~~~~~~~--~--------~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~G~S~ii~p 222 (269)
T cd07586 153 YLLALDGADVIFIPANSPARGV--G--------GDFDNEENWETLLKFYAMMNGVYVVFANRVGVEDGVYFWGGSRVVDP 222 (269)
T ss_pred HHHHHCCCCEEEEeCCCccccC--c--------cccchhHHHHHHHHHHHHHhCCeEEEEeeecCcCCceEeCCcEEECC
Confidence 3445689999999965432110 0 0000001234456777899999987743322 22 344455788889
Q ss_pred CCCEeEE
Q 031422 112 DGSDLGL 118 (160)
Q Consensus 112 ~G~i~~~ 118 (160)
+|+++..
T Consensus 223 ~G~il~~ 229 (269)
T cd07586 223 DGEVVAE 229 (269)
T ss_pred CCCEEEe
Confidence 9998743
No 66
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=84.82 E-value=13 Score=27.97 Aligned_cols=70 Identities=16% Similarity=0.047 Sum_probs=41.2
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccccc-C----Ceee-EE
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-N----NAHY-NS 105 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-~----~~~~-Ns 105 (160)
..+..+.+|+|+|+.|=.+..... .......++..|.+++++++....... + ...| -.
T Consensus 181 ~~r~la~~Gadlil~psa~~~~~~----------------~~~~~~~~~arA~en~~~vv~aN~~G~~~~~~~~~~~~G~ 244 (294)
T cd07582 181 VARGLAMNGAEVLLRSSSEVPSVE----------------LDPWEIANRARALENLAYVVSANSGGIYGSPYPADSFGGG 244 (294)
T ss_pred HHHHHHHCCCcEEEEcCCCCCCcc----------------hhhHHHHHHHHHHhcCCEEEEecccccCcccccCceecce
Confidence 345556679999999875432110 012223456778889999885322221 1 1223 45
Q ss_pred EEEEcCCCCEeE
Q 031422 106 IAIIDADGSDLG 117 (160)
Q Consensus 106 ~~~i~~~G~i~~ 117 (160)
+.+++|+|+++.
T Consensus 245 S~ivdp~G~vla 256 (294)
T cd07582 245 SMIVDYKGRVLA 256 (294)
T ss_pred eEEECCCCCEEE
Confidence 677789999864
No 67
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=84.57 E-value=10 Score=27.73 Aligned_cols=69 Identities=16% Similarity=0.062 Sum_probs=41.3
Q ss_pred HHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cCCe-eeEEEEEEcC
Q 031422 34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANNA-HYNSIAIIDA 111 (160)
Q Consensus 34 ~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~~~-~~Ns~~~i~~ 111 (160)
+..+..|+|+++.|=.+. +... . .......++..|.+++++++...... .++. +.=.+.+++|
T Consensus 156 r~~~~~ga~ll~~ps~~~--~~~~----------~---~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~G~S~ii~p 220 (261)
T cd07570 156 AELALAGADLILNLSASP--FHLG----------K---QDYRRELVSSRSARTGLPYVYVNQVGGQDDLVFDGGSFIADN 220 (261)
T ss_pred HHHHHcCCcEEEEeCCCc--cccC----------c---HHHHHHHHHHHHHHhCCcEEEEeCCCCCceEEEECceEEEcC
Confidence 445567999999996432 1100 0 01223457788899999987743322 2222 2344688899
Q ss_pred CCCEeE
Q 031422 112 DGSDLG 117 (160)
Q Consensus 112 ~G~i~~ 117 (160)
+|+++.
T Consensus 221 ~G~vl~ 226 (261)
T cd07570 221 DGELLA 226 (261)
T ss_pred CCCEEE
Confidence 999874
No 68
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=82.73 E-value=12 Score=27.22 Aligned_cols=69 Identities=19% Similarity=0.094 Sum_probs=40.4
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcC
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDA 111 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~ 111 (160)
..+..+.+|+|+++.|=.+..+.. .........+..|.+++++++...... ....=.+.++++
T Consensus 155 ~~~~~~~~ga~lil~ps~~~~~~~---------------~~~~~~~~~~~rA~en~~~vv~~n~~g--~~~~G~S~i~~p 217 (255)
T cd07581 155 LARALALAGADVIVVPAAWVAGPG---------------KEEHWETLLRARALENTVYVAAAGQAG--PRGIGRSMVVDP 217 (255)
T ss_pred HHHHHHHCCCcEEEECCcccCCCC---------------chHHHHHHHHHHHHHhCCEEEEEcCcC--CCcccceEEECC
Confidence 445556789999999854321110 001333455667788999987642221 122334678889
Q ss_pred CCCEeE
Q 031422 112 DGSDLG 117 (160)
Q Consensus 112 ~G~i~~ 117 (160)
+|.++.
T Consensus 218 ~G~i~~ 223 (255)
T cd07581 218 LGVVLA 223 (255)
T ss_pred Ccceee
Confidence 998764
No 69
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=82.59 E-value=13 Score=27.55 Aligned_cols=65 Identities=20% Similarity=0.097 Sum_probs=43.9
Q ss_pred HhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccccC---CeeeEEEEEEcCCC
Q 031422 37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN---NAHYNSIAIIDADG 113 (160)
Q Consensus 37 ~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~---~~~~Ns~~~i~~~G 113 (160)
+..|+++++.|-.+..... .......++..|.+++++++.......+ ...+-.+++++|+|
T Consensus 163 a~~Gaeii~~p~a~~~~~~----------------~~~w~~l~~arA~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G 226 (274)
T COG0388 163 ALGGAELLLVPAAWPAERG----------------LDHWEVLLRARAIENQVYVLAANRAGFDGAGLEFCGHSAIIDPDG 226 (274)
T ss_pred HhcCCeEEEEcCCCCCccc----------------HHHHHHHHHHHhhhcCceEEEecccCCCCCccEEecceEEECCCc
Confidence 4458999999997664321 0123334677788899999875433322 46778889999999
Q ss_pred CEeE
Q 031422 114 SDLG 117 (160)
Q Consensus 114 ~i~~ 117 (160)
+++.
T Consensus 227 ~v~~ 230 (274)
T COG0388 227 EVLA 230 (274)
T ss_pred cEEe
Confidence 8653
No 70
>PLN02798 nitrilase
Probab=82.14 E-value=13 Score=27.73 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=42.1
Q ss_pred HHHHHH-hCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc---cCCeeeEEEE
Q 031422 32 LVRAAH-GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE---ANNAHYNSIA 107 (160)
Q Consensus 32 ~i~~a~-~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~---~~~~~~Ns~~ 107 (160)
..+.++ .+|+|+|+.|-.+..... .......++..|.+++++++...-.. .+...+=.+.
T Consensus 171 ~~r~~a~~~Gadlil~ps~~~~~~~----------------~~~~~~~~~~rAien~~~vv~an~~G~~~~~~~~~G~S~ 234 (286)
T PLN02798 171 LYQQLRFEHGAQVLLVPSAFTKPTG----------------EAHWEVLLRARAIETQCYVIAAAQAGKHNEKRESYGHAL 234 (286)
T ss_pred HHHHHHHhCCCcEEEECCcCCCCCc----------------HHHHHHHHHHHHHHhCCEEEEecccCcCCCCceeeeeeE
Confidence 345555 789999999964321100 01222345677888999987632221 1233445678
Q ss_pred EEcCCCCEeE
Q 031422 108 IIDADGSDLG 117 (160)
Q Consensus 108 ~i~~~G~i~~ 117 (160)
+++|+|+++.
T Consensus 235 ii~p~G~il~ 244 (286)
T PLN02798 235 IIDPWGTVVA 244 (286)
T ss_pred EECCCccchh
Confidence 8899998863
No 71
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=81.88 E-value=17 Score=26.61 Aligned_cols=65 Identities=20% Similarity=0.008 Sum_probs=39.1
Q ss_pred HHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-c----CC-eeeEEE
Q 031422 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A----NN-AHYNSI 106 (160)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~----~~-~~~Ns~ 106 (160)
.+..+.+|+|+|+.|-.+... .....++..|.+++++++...... . .+ ...-.+
T Consensus 150 ~r~~~~~Gadli~~ps~~~~~--------------------~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~S 209 (259)
T cd07577 150 ARTLALKGADIIAHPANLVLP--------------------YCPKAMPIRALENRVFTITANRIGTEERGGETLRFIGKS 209 (259)
T ss_pred HHHHHHcCCCEEEECCccCCc--------------------hhhhhhhHhhhhcCceEEEEecCcccCCCCCCceEeeee
Confidence 455556899999999643211 111234667788899987532211 1 12 234557
Q ss_pred EEEcCCCCEeE
Q 031422 107 AIIDADGSDLG 117 (160)
Q Consensus 107 ~~i~~~G~i~~ 117 (160)
.+++|+|+++.
T Consensus 210 ~i~~p~G~i~~ 220 (259)
T cd07577 210 QITSPKGEVLA 220 (259)
T ss_pred EEECCCCCEEe
Confidence 88999999864
No 72
>PLN02504 nitrilase
Probab=80.93 E-value=13 Score=28.92 Aligned_cols=66 Identities=20% Similarity=0.086 Sum_probs=41.0
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccc---------------
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE--------------- 96 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~--------------- 96 (160)
..+..+.+|+|+++.|=.+ + ...+...++..|.+++++++.....
T Consensus 194 ~~r~la~~Gadii~~p~~~----~----------------~~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~~ 253 (346)
T PLN02504 194 LRTAMYAKGIEIYCAPTAD----S----------------RETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLFS 253 (346)
T ss_pred HHHHHHHCCCeEEEECCCC----C----------------chhHHHHHHHHHHccCcEEEEecccccccccCcccccccc
Confidence 3445557899999998432 1 0133345677899999998763221
Q ss_pred -cc-----C-CeeeEEEEEEcCCCCEeE
Q 031422 97 -EA-----N-NAHYNSIAIIDADGSDLG 117 (160)
Q Consensus 97 -~~-----~-~~~~Ns~~~i~~~G~i~~ 117 (160)
.. + ..++=.+++++|+|+++.
T Consensus 254 G~~~~~~~~~~~~~G~S~IvdP~G~vla 281 (346)
T PLN02504 254 GTEEDLTPDSIVCAGGSVIISPSGTVLA 281 (346)
T ss_pred cccccccccccccCcceEEECCCCCEec
Confidence 00 1 123456889999998863
No 73
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=80.64 E-value=12 Score=28.04 Aligned_cols=84 Identities=10% Similarity=0.008 Sum_probs=44.0
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhh--hcccCCC-ChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEE
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQ--RAKPYKD-HPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAI 108 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~--~~~~~~~-~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~ 108 (160)
..+..+.+|+|+|+.|-.+...+. ..|...... ...+... ....+.++..|.+++++++..........+.-.+.+
T Consensus 144 ~~r~~a~~Ga~ii~~psa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~aRA~EN~~~vv~aN~~g~~~~~~G~S~i 222 (279)
T cd07579 144 AGRVLALRGCDLLACPAAIAIPFV-GAHAGTSVPQPYPIPTGADPTHWHLARVRAGENNVYFAFANVPDPARGYTGWSGV 222 (279)
T ss_pred HHHHHHHCCCCEEEECCCcCCccc-cccccccccCCCCCcCccchhHHHHhHhHHhhCCeEEEEeeccCCccccccccEE
Confidence 345556789999999987543211 000000000 0000000 012335677889999999875333222233344678
Q ss_pred EcCCCCEe
Q 031422 109 IDADGSDL 116 (160)
Q Consensus 109 i~~~G~i~ 116 (160)
++|.|.++
T Consensus 223 i~P~G~v~ 230 (279)
T cd07579 223 FGPDTFAF 230 (279)
T ss_pred ECCCeEEc
Confidence 88998764
No 74
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=80.56 E-value=21 Score=26.45 Aligned_cols=78 Identities=18% Similarity=0.021 Sum_probs=42.5
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-c-----CCeeeEE
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A-----NNAHYNS 105 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~-----~~~~~Ns 105 (160)
..+....+|+|+++.|=.+- +...+ ...... ........++..|.+++++++...... . +-.+.=.
T Consensus 159 ~~r~~~~~gadlil~ps~~~--~~~~~----~~~~~~--~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~~~~~G~ 230 (284)
T cd07573 159 AARLMALQGAEILFYPTAIG--SEPQE----PPEGLD--QRDAWQRVQRGHAIANGVPVAAVNRVGVEGDPGSGITFYGS 230 (284)
T ss_pred HHHHHHHCCCCEEEecCccc--CCCCC----ccccCC--chHHHHHHHHHHHHHcCceEEEeccccccCCCCCCceeece
Confidence 34556678999999985432 11000 000000 011333445667888999988632221 1 2234456
Q ss_pred EEEEcCCCCEeE
Q 031422 106 IAIIDADGSDLG 117 (160)
Q Consensus 106 ~~~i~~~G~i~~ 117 (160)
+.+++|+|+++.
T Consensus 231 S~i~~p~G~i~~ 242 (284)
T cd07573 231 SFIADPFGEILA 242 (284)
T ss_pred eEEECCCCCeee
Confidence 788889998763
No 75
>PLN02747 N-carbamolyputrescine amidase
Probab=79.67 E-value=23 Score=26.49 Aligned_cols=77 Identities=17% Similarity=0.019 Sum_probs=43.1
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEec-cccc------c---CCe
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS-FFEE------A---NNA 101 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g-~~~~------~---~~~ 101 (160)
..+..+.+|+|+|+.|=.+.+.. ... + ... ...+...++..|.+++++++.. ..-. . +..
T Consensus 164 ~~r~~~~~Ga~lil~ps~~~~~~-~~~----~---~~~--~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~g~~~~~ 233 (296)
T PLN02747 164 AARAMVLQGAEVLLYPTAIGSEP-QDP----G---LDS--RDHWKRVMQGHAGANLVPLVASNRIGTEILETEHGPSKIT 233 (296)
T ss_pred HHHHHHHCCCCEEEEeCccCCCC-ccc----c---cch--HHHHHHHHHHHHHHcCCeEEEEecccccccccccCCcCce
Confidence 34556678999999987653210 000 0 000 0123344567788889988763 2211 1 123
Q ss_pred eeEEEEEEcCCCCEeEE
Q 031422 102 HYNSIAIIDADGSDLGL 118 (160)
Q Consensus 102 ~~Ns~~~i~~~G~i~~~ 118 (160)
++=.+.+++|+|+++..
T Consensus 234 ~~G~S~i~~p~G~vl~~ 250 (296)
T PLN02747 234 FYGGSFIAGPTGEIVAE 250 (296)
T ss_pred EeeeeEEECCCCCEeec
Confidence 44557888899998753
No 76
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=78.28 E-value=17 Score=26.89 Aligned_cols=62 Identities=19% Similarity=0.169 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
+..++.+.+.++.|+.-|++.|+++..... + .....+.+... ...++.+.+.|+++|+.+.+
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~-~-~~~~~~~~~~~------~~~l~~l~~~A~~~Gv~l~l 151 (279)
T TIGR00542 90 QQGLEIMEKAIQLARDLGIRTIQLAGYDVY-Y-EEHDEETRRRF------REGLKEAVELAARAQVTLAV 151 (279)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEecCcccc-c-CcCCHHHHHHH------HHHHHHHHHHHHHcCCEEEE
Confidence 356778899999999999999998742110 1 01111111111 25667788889999998877
No 77
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=78.14 E-value=12 Score=23.76 Aligned_cols=50 Identities=18% Similarity=0.030 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 28 ~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
...+.+.++.++|..+++|||...... . . ..++..-...+|++.++.|+.
T Consensus 77 ~~~~~~~~~l~~g~~v~ifPeG~~~~~--~----------~---~~~f~~g~~~la~~~~~pvvp 126 (130)
T TIGR00530 77 TALKAAIEVLKQGRSIGVFPEGTRSRG--R----------D---ILPFKKGAFHIAIKAGVPILP 126 (130)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCC--C----------C---CCCcchhHHHHHHHcCCCEEe
Confidence 334445555667889999999864311 0 0 013345566778888887763
No 78
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=78.09 E-value=7 Score=27.35 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhC--CCcEEEeccccc
Q 031422 24 TNLATAERLVRAAHGK--GANIILIQELFE 51 (160)
Q Consensus 24 ~n~~~~~~~i~~a~~~--~~dlvv~PE~~~ 51 (160)
...+.+.+.++...+. +..+++|||..-
T Consensus 86 ~d~~~i~~~~~~l~~~~~~~~lviFPEGTr 115 (193)
T cd07990 86 KDEKTIKRQLKRLKDSPEPFWLLIFPEGTR 115 (193)
T ss_pred HhHHHHHHHHHHHhcCCCCcEEEEeCcccC
Confidence 3445666666666553 788999999744
No 79
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=77.68 E-value=19 Score=26.50 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
.+..++.+.+.++.|+.-|++.|+++-... ++.. . ..+..+.. .+.++.+.+.|+++|+.+.+
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~-~~~~-~-~~~~~~~~-----~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAHA-GYLT-P-PNVIWGRL-----AENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCCC-CCCC-C-HHHHHHHH-----HHHHHHHHHHHHHcCCEEEE
Confidence 345788999999999999999988865422 2211 1 11111111 25778889999999998876
No 80
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=76.49 E-value=20 Score=26.35 Aligned_cols=63 Identities=10% Similarity=-0.052 Sum_probs=39.1
Q ss_pred CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cC--CeeeEEEEEEcCCCCE
Q 031422 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-AN--NAHYNSIAIIDADGSD 115 (160)
Q Consensus 39 ~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~--~~~~Ns~~~i~~~G~i 115 (160)
+++|+++.|=.|.... ...+...++..|.+++++++...... .+ ..++=.+.+++|+|++
T Consensus 154 ~gad~i~~~s~~~~~~-----------------~~~~~~~~~aRA~En~~~vv~~n~~G~~~~~~~~~G~S~ivdP~G~v 216 (256)
T PRK10438 154 NDYDLALYVANWPAPR-----------------SLHWQTLLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINPQGEI 216 (256)
T ss_pred cCCCEEEEecCCCCCc-----------------hHHHHHHHHHHHHhcCcEEEEecccccCCCCCEEcCceEEECCCCcE
Confidence 4789999986543110 01223345778899999987743322 21 2344567889999998
Q ss_pred eEE
Q 031422 116 LGL 118 (160)
Q Consensus 116 ~~~ 118 (160)
+..
T Consensus 217 l~~ 219 (256)
T PRK10438 217 IAT 219 (256)
T ss_pred EEE
Confidence 643
No 81
>PRK13287 amiF formamidase; Provisional
Probab=74.47 E-value=37 Score=26.17 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=39.2
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccccCC--eeeEEEEEE
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANN--AHYNSIAII 109 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~--~~~Ns~~~i 109 (160)
..+..+.+|+|+++-|=.+.... .....-..+..|.+++++++.......++ .++=.++++
T Consensus 173 ~~R~~a~~GAeill~~s~~~~~~-----------------~~~w~~~~~arA~en~~~vv~an~~G~~~~~~~~G~S~Ii 235 (333)
T PRK13287 173 MAREAAYKGANVMIRISGYSTQV-----------------REQWILTNRSNAWQNLMYTASVNLAGYDGVFYYFGEGQVC 235 (333)
T ss_pred HHHHHHHCCCeEEEECCccCCcc-----------------hhHHHHHHHHHHHhCCcEEEEEeccccCCCeeeeeeeEEE
Confidence 44555668999999884322100 01111223455777888876532222222 234557888
Q ss_pred cCCCCEeEE
Q 031422 110 DADGSDLGL 118 (160)
Q Consensus 110 ~~~G~i~~~ 118 (160)
+|+|+++..
T Consensus 236 dp~G~vl~~ 244 (333)
T PRK13287 236 NFDGTTLVQ 244 (333)
T ss_pred CCCCcEEEe
Confidence 999988643
No 82
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=74.36 E-value=27 Score=25.81 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
+...+.+.+.++.|+.-|++.|++|-. ..+........+... ...++.+.+.++++|+.+.+
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~------~~~l~~l~~~a~~~gv~l~l 151 (284)
T PRK13210 90 ERALEIMKKAIRLAQDLGIRTIQLAGY--DVYYEEKSEETRQRF------IEGLAWAVEQAAAAQVMLAV 151 (284)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECCc--ccccccccHHHHHHH------HHHHHHHHHHHHHhCCEEEE
Confidence 456788899999999999999998621 111001101111111 25567788889999998877
No 83
>PRK13981 NAD synthetase; Provisional
Probab=71.64 E-value=33 Score=28.32 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=42.8
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccc-ccCCe-eeEEEEEE
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANNA-HYNSIAII 109 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~~~~-~~Ns~~~i 109 (160)
..+..+.+|+|+|+.|=.+ ++... . .......++..|.+++++++..... ..++. +.-.++++
T Consensus 153 ~~r~la~~Gadlil~psa~--~~~~~----------~---~~~~~~~~~~rA~En~~~vv~aN~vG~~~~~~f~G~S~i~ 217 (540)
T PRK13981 153 PAETLAEAGAELLLVPNAS--PYHRG----------K---PDLREAVLRARVRETGLPLVYLNQVGGQDELVFDGASFVL 217 (540)
T ss_pred HHHHHHHCCCcEEEEcCCC--cccCC----------c---HHHHHHHHHHHHHHhCCeEEEEecccCCCceEEeCceEEE
Confidence 4455567899999999432 22111 0 0122346788899999998764322 22333 33557888
Q ss_pred cCCCCEeE
Q 031422 110 DADGSDLG 117 (160)
Q Consensus 110 ~~~G~i~~ 117 (160)
+++|+++.
T Consensus 218 dp~G~il~ 225 (540)
T PRK13981 218 NADGELAA 225 (540)
T ss_pred CCCCCEee
Confidence 89998763
No 84
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=71.59 E-value=15 Score=25.11 Aligned_cols=35 Identities=11% Similarity=-0.002 Sum_probs=23.8
Q ss_pred CCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 40 GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 40 ~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
+..+++|||..-+. ...+..-...+|.+.++.|+-
T Consensus 95 ~~~l~IFPEGtR~~------------------~~~fk~G~~~lA~~~~~PIvP 129 (163)
T cd07988 95 EFVLAIAPEGTRSK------------------VDKWKTGFYHIARGAGVPILL 129 (163)
T ss_pred CcEEEEeCCCCCCC------------------CcChhhHHHHHHHHcCCCEEE
Confidence 45799999986542 023445667778888888763
No 85
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=69.23 E-value=37 Score=25.14 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
+...+.+++.++.|+.-|+..|+++-. ..++ .....+..+.. -..++.+.+.|+++|+.+.+
T Consensus 95 ~~~~~~~~~~i~~a~~lG~~~i~~~~~-~~~~--~~~~~~~~~~~-----~~~l~~l~~~A~~~GV~i~i 156 (283)
T PRK13209 95 AQALEIMRKAIQLAQDLGIRVIQLAGY-DVYY--EQANNETRRRF-----IDGLKESVELASRASVTLAF 156 (283)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCc-cccc--cccHHHHHHHH-----HHHHHHHHHHHHHhCCEEEE
Confidence 456778899999999999999998521 1001 00011111111 14567788888999998876
No 86
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=68.88 E-value=39 Score=25.39 Aligned_cols=71 Identities=14% Similarity=-0.016 Sum_probs=40.5
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc--------------
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-------------- 97 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-------------- 97 (160)
..+.++.+|+|+++-|=. .+.+ . ... .......++..|.+++++++......
T Consensus 165 ~~r~~a~~ga~ii~~~~~--~~~~-~--------~~~---~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~~~~~~ 230 (297)
T cd07564 165 ARYALYAQGEQIHVAPWP--DFSP-Y--------YLS---REAWLAASRHYALEGRCFVLSACQVVTEEDIPADCEDDEE 230 (297)
T ss_pred HHHHHHHCCCeEEEECCC--Cccc-c--------ccc---HHHHHHHHHHHHHhcCCEEEEcccccChhHcccccccccc
Confidence 455566789999886421 1111 0 000 11333456778899999998632211
Q ss_pred ---cCCeeeEEEEEEcCCCCEe
Q 031422 98 ---ANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 98 ---~~~~~~Ns~~~i~~~G~i~ 116 (160)
.....+=.+.+++|+|+++
T Consensus 231 ~~~~~~~~~G~S~iv~P~G~il 252 (297)
T cd07564 231 ADPLEVLGGGGSAIVGPDGEVL 252 (297)
T ss_pred cccccccCCCceEEECCCCCee
Confidence 1122345678999999886
No 87
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=67.38 E-value=28 Score=27.97 Aligned_cols=37 Identities=8% Similarity=0.199 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHcCcEEEe-ccccccC--------CeeeEEEEEEc
Q 031422 74 PTILKMQELAKELGVVMPV-SFFEEAN--------NAHYNSIAIID 110 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~-g~~~~~~--------~~~~Ns~~~i~ 110 (160)
+....|.++|+..++++++ |...+++ .++..+.+.|.
T Consensus 197 e~t~~L~~~AK~~~i~~fiVGHVTKeG~IAGPrvLEHmVDtVlyFE 242 (456)
T COG1066 197 EVAAELMRLAKTKNIAIFIVGHVTKEGAIAGPRVLEHMVDTVLYFE 242 (456)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEEcccccccCchheeeeeeEEEEEe
Confidence 4556799999999999876 9888865 26789999995
No 88
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=66.75 E-value=31 Score=25.52 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
.+..++.+.+.++.|+.-|++.+++.-....+ ...++..+.. ...++.+.+.++++++.+.+
T Consensus 80 r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~----~~~~~~~~~~-----~~~l~~l~~~a~~~gi~l~l 141 (279)
T cd00019 80 REKSIERLKDEIERCEELGIRLLVFHPGSYLG----QSKEEGLKRV-----IEALNELIDKAETKGVVIAL 141 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCCCC----CCHHHHHHHH-----HHHHHHHHHhccCCCCEEEE
Confidence 55678899999999999999998874332211 1111111111 14455666666788888876
No 89
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=66.05 E-value=36 Score=25.10 Aligned_cols=85 Identities=12% Similarity=0.114 Sum_probs=46.3
Q ss_pred CcccEEEEEeCCC-CC---CHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHH
Q 031422 6 RREVVVSALQFAC-TD---DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE 81 (160)
Q Consensus 6 ~~~~~va~~Q~~~-~~---~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (160)
|..+|||.+|+.- .+ ++....+++.+++..+ |++..|=+.-..-.++ -+..-.--...+.+.++.+.+
T Consensus 1 ~~~ikva~~~L~gC~GC~~slldl~E~L~dll~~~-----div~~~~l~D~keiPE---vDValVEGsV~~ee~lE~v~E 72 (247)
T COG1941 1 MEKIKVATVWLTGCSGCHMSLLDLYEKLLDLLEDA-----DIVYCPTLVDEKEIPE---VDVALVEGSVCDEEELELVKE 72 (247)
T ss_pred CcceEEEEEEeccccchHHHHHhHHHHHHHhhhhh-----cEEEeecccccccCCc---ccEEEEecccCcHHHHHHHHH
Confidence 3568999999987 33 3444555555555533 6666554433220000 000000011113567777788
Q ss_pred HHHHcCcEEEecccccc
Q 031422 82 LAKELGVVMPVSFFEEA 98 (160)
Q Consensus 82 ~a~~~~i~i~~g~~~~~ 98 (160)
+-.+..+.|.+|.-...
T Consensus 73 lRekakivVA~GsCA~~ 89 (247)
T COG1941 73 LREKAKIVVALGSCAVT 89 (247)
T ss_pred HHHhCcEEEEEecchhc
Confidence 77788888888865443
No 90
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=66.02 E-value=49 Score=24.12 Aligned_cols=67 Identities=19% Similarity=0.040 Sum_probs=38.8
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cC-CeeeEEEEEE
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-AN-NAHYNSIAII 109 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~-~~~~Ns~~~i 109 (160)
..+..+.+|+|+++.|=.|..+.. .. ..+...|.+++++++...... .+ ...+=.+.++
T Consensus 154 ~~r~~~~~ga~ll~~ps~~~~~~~------------------~~-~~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~ii 214 (258)
T cd07578 154 TARLLALGGADVICHISNWLAERT------------------PA-PYWINRAFENGCYLIESNRWGLERGVQFSGGSCII 214 (258)
T ss_pred HHHHHHHcCCCEEEEcCCCCCCCC------------------cc-hHHHHhhhcCCeEEEEecceeccCCcceeeEEEEE
Confidence 344555689999999865332110 00 112356778888887643221 22 2334557889
Q ss_pred cCCCCEeE
Q 031422 110 DADGSDLG 117 (160)
Q Consensus 110 ~~~G~i~~ 117 (160)
+|+|+++.
T Consensus 215 ~p~G~il~ 222 (258)
T cd07578 215 EPDGTIQA 222 (258)
T ss_pred CCCCcEee
Confidence 99998763
No 91
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=65.67 E-value=42 Score=23.15 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccc
Q 031422 26 LATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (160)
Q Consensus 26 ~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~ 96 (160)
.++..+.++..++.|.|-||+--....+..... .++............++.+-++|.+.|+-+.+|...
T Consensus 19 ~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yp--s~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~ 87 (166)
T PF14488_consen 19 PAQWREEFRAMKAIGIDTLILQWTGYGGFAFYP--SKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF 87 (166)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeecCCcccCC--ccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC
Confidence 456777777777889999999976554432111 111000111123578899999999999999999664
No 92
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=63.29 E-value=20 Score=24.72 Aligned_cols=98 Identities=21% Similarity=0.244 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccc-cchhhHhhhcccCCC-----ChHHHHHHHHHHHcCcEEEe
Q 031422 19 TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQ-AQREDFFQRAKPYKD-----HPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 19 ~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~-~~~~~~~~~~~~~~~-----~~~~~~l~~~a~~~~i~i~~ 92 (160)
+.-+...+.++.++.++..+.+.++-++- ++ ..+. +..+.+.+.+..... ......++++++.+++...-
T Consensus 65 pdvCp~~l~~l~~~~~~l~~~~~~v~~v~---IS-vDP~~DTp~~L~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~ 140 (174)
T PF02630_consen 65 PDVCPTTLANLSQLQKQLGEEGKDVQFVF---IS-VDPERDTPEVLKKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEK 140 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTTTEEEEE---EE-SSTTTC-HHHHHHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEE
T ss_pred CccCHHHHHHHHHHHHHhhhccCceEEEE---EE-eCCCCCCHHHHHHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcc
Confidence 33356666667777766665544442221 11 1222 222222222221110 12345678888888877654
Q ss_pred cccccc-CCeee---EEEEEEcCCCCEeEEee
Q 031422 93 SFFEEA-NNAHY---NSIAIIDADGSDLGLYR 120 (160)
Q Consensus 93 g~~~~~-~~~~~---Ns~~~i~~~G~i~~~y~ 120 (160)
...... ++..+ +..++++|+|++...|.
T Consensus 141 ~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 141 VPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp EESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred cccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 322222 22222 45688999999988875
No 93
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=62.77 E-value=60 Score=23.96 Aligned_cols=64 Identities=19% Similarity=0.073 Sum_probs=35.4
Q ss_pred HHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-c-----CCeeeEEE
Q 031422 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A-----NNAHYNSI 106 (160)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~-----~~~~~Ns~ 106 (160)
.+..+.+|+|+|+.|-.+..... .......++..|.+++++++...... . ....+-.+
T Consensus 162 ~r~l~~~ga~ii~~ps~~~~~~~----------------~~~~~~~~~arA~en~~~vv~an~~G~~~~~~~~~~~~G~S 225 (280)
T cd07574 162 ARALAEAGADLLLVPSCTDTRAG----------------YWRVRIGAQARALENQCYVVQSGTVGNAPWSPAVDVNYGQA 225 (280)
T ss_pred HHHHHHcCCCEEEECCcCCcccc----------------HHHHHHHHHHHHHhhCceEEEeCCCCCCCCccccccccccc
Confidence 45556789999999864321100 01222235666778899987643222 1 12344456
Q ss_pred EEEcCC
Q 031422 107 AIIDAD 112 (160)
Q Consensus 107 ~~i~~~ 112 (160)
.+++|.
T Consensus 226 ~i~~P~ 231 (280)
T cd07574 226 AVYTPC 231 (280)
T ss_pred eeecCC
Confidence 777775
No 94
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=62.73 E-value=44 Score=23.58 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhCCCcEEEecccccc
Q 031422 27 ATAERLVRAAHGKGANIILIQELFEG 52 (160)
Q Consensus 27 ~~~~~~i~~a~~~~~dlvv~PE~~~~ 52 (160)
+.+.+.+.++.++|..+++|||..-+
T Consensus 88 ~~~~~~~~~~l~~g~~l~iFPEGtrs 113 (205)
T cd07993 88 AVLQEYVQELLKNGQPLEFFIEGTRS 113 (205)
T ss_pred HHHHHHHHHHHhCCceEEEEcCCCCC
Confidence 34555666667779999999998654
No 95
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=62.58 E-value=27 Score=19.89 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEe
Q 031422 76 ILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 76 ~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~ 116 (160)
-..+..+..+..+.++-|+-- ..++.|++.++++.++.+.
T Consensus 18 ~~~~~~Ll~~gkT~~ikGF~S-K~Gk~F~A~L~l~~~~~v~ 57 (62)
T PF13342_consen 18 DEEVKELLEKGKTGLIKGFKS-KKGKPFDAYLVLDDDKKVK 57 (62)
T ss_pred HHHHHHHHHcCCccCccCccc-CCCCEEeEEEEEcCCCeEE
Confidence 356777877777887778766 5688999999998766543
No 96
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=61.26 E-value=51 Score=22.68 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
+...+.+.+.++.|+.-|++.++++=.........+....+... .+.++.+.+.++++++.+.+
T Consensus 67 ~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~------~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 67 EEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERL------AENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHH------HHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHH------HHHHHHHHhhhhhhcceEEE
Confidence 34478889999999999999999883210001111111112222 25667888889999998876
No 97
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=60.84 E-value=29 Score=24.61 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 24 TNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
.+.+.+.+..+.. ++|-.++||||...+..... + .+. ....+..-...+|.+.++.|+-
T Consensus 83 ~~~~~~~~~~~~L-~~G~~l~IFPEGtrs~~~~~-----~---g~~-~~~~fk~G~~~lA~~~~~pIvP 141 (210)
T cd07986 83 KNRESLREALRHL-KNGGALIIFPAGRVSTASPP-----F---GRV-SDRPWNPFVARLARKAKAPVVP 141 (210)
T ss_pred hhHHHHHHHHHHH-hCCCEEEEECCccccccccc-----C---Ccc-ccCCccHHHHHHHHHHCCCEEE
Confidence 3444444444444 46789999999865432110 0 000 0124455667788888888764
No 98
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=60.26 E-value=22 Score=24.36 Aligned_cols=85 Identities=18% Similarity=0.143 Sum_probs=44.7
Q ss_pred CCcEEEecccccccccccc--chhhHhhhccc----C-CCChHHHHHHHHHHHcCcEEEe-ccccc------------c-
Q 031422 40 GANIILIQELFEGYYFCQA--QREDFFQRAKP----Y-KDHPTILKMQELAKELGVVMPV-SFFEE------------A- 98 (160)
Q Consensus 40 ~~dlvv~PE~~~~g~~~~~--~~~~~~~~~~~----~-~~~~~~~~l~~~a~~~~i~i~~-g~~~~------------~- 98 (160)
.+=|..+|-.+.+|+..+. +++.+.+.... + -+.......++++.++++.+-+ +-+.. .
T Consensus 32 ~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~ 111 (157)
T COG1225 32 PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKM 111 (157)
T ss_pred cEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccccccc
Confidence 4556667887777753221 12222111110 0 0234555667777777666432 21111 0
Q ss_pred CC----eeeEEEEEEcCCCCEeEEeeeccC
Q 031422 99 NN----AHYNSIAIIDADGSDLGLYRKSHI 124 (160)
Q Consensus 99 ~~----~~~Ns~~~i~~~G~i~~~y~K~~l 124 (160)
-+ ..--+.++|+++|.|...+++...
T Consensus 112 ~gk~~~~~~R~TfvId~dG~I~~~~~~v~~ 141 (157)
T COG1225 112 YGKEYMGIERSTFVIDPDGKIRYVWRKVKV 141 (157)
T ss_pred CccccccccceEEEECCCCeEEEEecCCCC
Confidence 01 244678999999999888866644
No 99
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=59.94 E-value=68 Score=23.71 Aligned_cols=67 Identities=22% Similarity=0.122 Sum_probs=39.5
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcC
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDA 111 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~ 111 (160)
..+.++.+|+|+|+.|=.... +.. ... ........+..|.+++++++..... =.+.+++|
T Consensus 168 ~~r~~~~~ga~iil~ps~~~~-~~~---------~~~---~~~~~~~~~arA~en~~~vv~~n~~-------G~S~ivdp 227 (270)
T cd07571 168 LVRDAVRQGADLLVNITNDAW-FGD---------SAG---PYQHLAMARLRAIETGRPLVRAANT-------GISAVIDP 227 (270)
T ss_pred HHHhhcccCCCEEEEcCcccc-cCC---------Ccc---hHHHHHHHHHHHHHhCCCEEEEcCC-------eeeEEECC
Confidence 445666789999998863210 000 000 0123344567788999988764211 13678899
Q ss_pred CCCEeEE
Q 031422 112 DGSDLGL 118 (160)
Q Consensus 112 ~G~i~~~ 118 (160)
.|+++..
T Consensus 228 ~G~ii~~ 234 (270)
T cd07571 228 DGRIVAR 234 (270)
T ss_pred CCcEEee
Confidence 9998744
No 100
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=59.64 E-value=19 Score=22.17 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEecccccc
Q 031422 24 TNLATAERLVRAAHGKGANIILIQELFEG 52 (160)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dlvv~PE~~~~ 52 (160)
.+.+.+.+.++ +.+.+..+++|||....
T Consensus 60 ~~~~~~~~~~~-~l~~~~~~~ifPeG~~~ 87 (118)
T smart00563 60 LARAALREAVR-LLRDGGWLLIFPEGTRS 87 (118)
T ss_pred HHHHHHHHHHH-HHhCCCEEEEeCCcccC
Confidence 44555555554 44568999999998653
No 101
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=58.47 E-value=18 Score=23.04 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhCCCcEEEeccccc
Q 031422 27 ATAERLVRAAHGKGANIILIQELFE 51 (160)
Q Consensus 27 ~~~~~~i~~a~~~~~dlvv~PE~~~ 51 (160)
....+.+.+..+++.-+++|||...
T Consensus 78 ~~~~~~~~~~l~~~~~i~ifPEG~~ 102 (132)
T PF01553_consen 78 RKALKDIKEILRKGGSIVIFPEGTR 102 (132)
T ss_dssp HHHHHHHHHHHHC---EEE-TT-S-
T ss_pred chhHHHHHHHhhhcceeeecCCccC
Confidence 3344444444455555999999744
No 102
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=57.59 E-value=47 Score=21.15 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHc-CcEEEecc
Q 031422 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL-GVVMPVSF 94 (160)
Q Consensus 27 ~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-~i~i~~g~ 94 (160)
+++...+++..+.++|.|.|.=....+.+.. .. +..+.+.+..++. ++.++.|.
T Consensus 52 ~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~---------~C-----P~~~~~~~~I~~~~gi~VV~GT 106 (107)
T PF08821_consen 52 RKLVRRIKKLKKNGADVIHLSSCMVKGNPHG---------PC-----PHIDEIKKIIEEKFGIEVVEGT 106 (107)
T ss_pred hHHHHHHHHHHHCCCCEEEEcCCEecCCCCC---------CC-----CCHHHHHHHHHHHhCCCEeeec
Confidence 4566666667788999999998766543100 11 2345555555444 88888764
No 103
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=56.18 E-value=57 Score=21.82 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 031422 21 DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (160)
Q Consensus 21 ~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~ 91 (160)
+.+...+.+.++++.+.+.++++++..=. .+... ...+ ...+.+.++++|+++++.++
T Consensus 82 ~~~~~~~~l~~li~~~~~~~~~vil~~~~-~~~~~----~~~~--------~~~~~~~~~~~a~~~~~~~~ 139 (177)
T cd01822 82 PPDQTRANLRQMIETAQARGAPVLLVGMQ-APPNY----GPRY--------TRRFAAIYPELAEEYGVPLV 139 (177)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEecC-CCCcc----chHH--------HHHHHHHHHHHHHHcCCcEe
Confidence 35556666677777776668888875200 01000 0001 12566778888999887665
No 104
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=56.08 E-value=14 Score=28.16 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=30.8
Q ss_pred HHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeeeccCCC
Q 031422 84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPD 126 (160)
Q Consensus 84 ~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~ 126 (160)
+.++...+.+ +..+....||...+|+-+|....+|+|.++..
T Consensus 110 k~yns~~~~~-~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~ 151 (298)
T KOG0806|consen 110 KLYNSCADSS-CPGDGLAKYRKNHLFDTDGPGVIRYRESHLLS 151 (298)
T ss_pred cccCcccccC-CCcchhheeeeeEEeccCCccceeeeeeeccC
Confidence 4444444433 22345678999999999999889999999875
No 105
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=54.76 E-value=33 Score=25.59 Aligned_cols=74 Identities=15% Similarity=0.248 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cCCeeeEEE
Q 031422 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANNAHYNSI 106 (160)
Q Consensus 28 ~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~~~~~Ns~ 106 (160)
+-+-.+..|-.++++++++=|-... .+..- .-+.++.+++++++.++.++.-.... ..-++-...
T Consensus 144 rQrv~iArALaQ~~~iLLLDEPTs~-----------LDi~~---Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~ 209 (258)
T COG1120 144 RQRVLIARALAQETPILLLDEPTSH-----------LDIAH---QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHL 209 (258)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCccc-----------cCHHH---HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 4444666677789999999995331 11111 23778889999999999887765543 234555666
Q ss_pred EEEcCCCCEe
Q 031422 107 AIIDADGSDL 116 (160)
Q Consensus 107 ~~i~~~G~i~ 116 (160)
+++ .+|++.
T Consensus 210 i~l-k~G~i~ 218 (258)
T COG1120 210 ILL-KDGKIV 218 (258)
T ss_pred EEE-ECCeEE
Confidence 666 568764
No 106
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=53.53 E-value=69 Score=22.82 Aligned_cols=53 Identities=19% Similarity=0.111 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 24 TNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
...+.+++..+.. ++|-.+++|||..-+.. . . -..+..-...+|.+.++.|+.
T Consensus 107 ~~~~~~~~~~~~l-~~g~~v~IfPEGtr~~~--~----------~---~~~f~~G~~~lA~~~~~pIvP 159 (214)
T PLN02901 107 SQLECLKRCMELL-KKGASVFFFPEGTRSKD--G----------K---LAAFKKGAFSVAAKTGVPVVP 159 (214)
T ss_pred HHHHHHHHHHHHH-hCCCEEEEeCCCCCCCC--C----------c---ccCchhhHHHHHHHcCCCEEE
Confidence 3334444444443 46889999999853211 0 0 013344455678888888764
No 107
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=53.28 E-value=70 Score=24.79 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEeccc----cccc------cccc-cc----hhhHhhhcccCCCChHHHHHHHHHH
Q 031422 20 DDVSTNLATAERLVRAAHGKGANIILIQEL----FEGY------YFCQ-AQ----REDFFQRAKPYKDHPTILKMQELAK 84 (160)
Q Consensus 20 ~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~----~~~g------~~~~-~~----~~~~~~~~~~~~~~~~~~~l~~~a~ 84 (160)
.+-...++..++.++.|++.|||.|=|.=. .... |... .| ..++.+..+ ...+.+.+|.+.++
T Consensus 9 ~NH~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~e~~~~L~~~~~ 86 (329)
T TIGR03569 9 VNHNGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLE--LSEEDHRELKEYCE 86 (329)
T ss_pred CCccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 345667889999999999999998877532 1111 1000 11 112222222 23578899999999
Q ss_pred HcCcEEEecccc
Q 031422 85 ELGVVMPVSFFE 96 (160)
Q Consensus 85 ~~~i~i~~g~~~ 96 (160)
+.|+.++...+.
T Consensus 87 ~~Gi~~~stpfd 98 (329)
T TIGR03569 87 SKGIEFLSTPFD 98 (329)
T ss_pred HhCCcEEEEeCC
Confidence 999999876443
No 108
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=52.79 E-value=40 Score=18.89 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccc
Q 031422 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (160)
Q Consensus 28 ~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~ 95 (160)
...++++.|+++|.+.+.+-+-... .....+.+.+++.++.++.|..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~---------------------~~~~~~~~~~~~~gi~~i~G~E 62 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNL---------------------FGAVEFYKAAKKAGIKPIIGLE 62 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCcc---------------------cCHHHHHHHHHHcCCeEEEEEE
Confidence 4678889999999999999885421 1112355666678898888853
No 109
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=52.50 E-value=19 Score=26.66 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=44.1
Q ss_pred HhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEe
Q 031422 37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 37 ~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~ 116 (160)
..-++|++++=|..-.|.. .+.+ ...+++.++.++..+.++++.....=.++.|.++++ .+|++.
T Consensus 162 ~~~~pdILllDEvlavGD~------~F~~--------K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l-~~G~i~ 226 (249)
T COG1134 162 THVEPDILLLDEVLAVGDA------AFQE--------KCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWL-EHGQIR 226 (249)
T ss_pred hhcCCCEEEEehhhhcCCH------HHHH--------HHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEE-eCCEEE
Confidence 3457999999997555432 1222 445677888777777787776654446788999999 478763
No 110
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=51.96 E-value=1e+02 Score=23.70 Aligned_cols=98 Identities=16% Similarity=0.199 Sum_probs=59.5
Q ss_pred ccEEEEEeCCCCCCHHHHHH-----------------HHHHH-HHHHHhCCCcEEEeccccc--cccccccchhhHhhhc
Q 031422 8 EVVVSALQFACTDDVSTNLA-----------------TAERL-VRAAHGKGANIILIQELFE--GYYFCQAQREDFFQRA 67 (160)
Q Consensus 8 ~~~va~~Q~~~~~~~~~n~~-----------------~~~~~-i~~a~~~~~dlvv~PE~~~--~g~~~~~~~~~~~~~~ 67 (160)
.+.|-.+|.++..+....+. +.... ++.....++.++|+=|.-. .|-. .
T Consensus 95 ~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~--------~--- 163 (302)
T PF05621_consen 95 RIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY--------R--- 163 (302)
T ss_pred cccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH--------H---
Confidence 35688999887544332222 22222 2334566999999999832 3321 1
Q ss_pred ccCCCChHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcCCCCEeEEeeeccCCCC
Q 031422 68 KPYKDHPTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDG 127 (160)
Q Consensus 68 ~~~~~~~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~ 127 (160)
....+++.|+.++.+.++.+++ |..+- ++ .+..+-++..+|....|+.+
T Consensus 164 ---~qr~~Ln~LK~L~NeL~ipiV~vGt~~A-----~~---al~~D~QLa~RF~~~~Lp~W 213 (302)
T PF05621_consen 164 ---KQREFLNALKFLGNELQIPIVGVGTREA-----YR---ALRTDPQLASRFEPFELPRW 213 (302)
T ss_pred ---HHHHHHHHHHHHhhccCCCeEEeccHHH-----HH---HhccCHHHHhccCCccCCCC
Confidence 1257889999999999999987 75542 11 12233455566777777654
No 111
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=51.86 E-value=28 Score=26.87 Aligned_cols=71 Identities=17% Similarity=0.311 Sum_probs=47.3
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cCCeeeEEEEEEc
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANNAHYNSIAIID 110 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~~~~~Ns~~~i~ 110 (160)
.|..|-..++++++.=|.... . +|.+....++.|+++-++.++.|+.=..+- -=.++.|.+++++
T Consensus 151 aIARALa~~P~iLL~DEaTSA-L-------------DP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~ 216 (339)
T COG1135 151 AIARALANNPKILLCDEATSA-L-------------DPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLD 216 (339)
T ss_pred HHHHHHhcCCCEEEecCcccc-C-------------ChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEee
Confidence 444555678999999996442 1 111235788899999999999987632322 1246778888884
Q ss_pred CCCCEeE
Q 031422 111 ADGSDLG 117 (160)
Q Consensus 111 ~~G~i~~ 117 (160)
+|+++.
T Consensus 217 -~G~lvE 222 (339)
T COG1135 217 -QGRLVE 222 (339)
T ss_pred -CCEEEE
Confidence 687653
No 112
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=51.53 E-value=42 Score=25.00 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhCCCc-EEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 24 TNLATAERLVRAAHGKGAN-IILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~d-lvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
.+.+...+..+.|.+.|+| +++.|-.+... . .....+.+++++...++.+++
T Consensus 79 ~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~---~--------------~~~l~~~~~~ia~~~~~pi~l 131 (284)
T cd00950 79 NNTAEAIELTKRAEKAGADAALVVTPYYNKP---S--------------QEGLYAHFKAIAEATDLPVIL 131 (284)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcccccCCC---C--------------HHHHHHHHHHHHhcCCCCEEE
Confidence 3567778888889999999 55555433210 0 124556666666666666654
No 113
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=50.98 E-value=24 Score=24.81 Aligned_cols=25 Identities=20% Similarity=-0.005 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhCCCcEEEecccccc
Q 031422 28 TAERLVRAAHGKGANIILIQELFEG 52 (160)
Q Consensus 28 ~~~~~i~~a~~~~~dlvv~PE~~~~ 52 (160)
...+.+.++.++|-.++||||...+
T Consensus 98 ~~~~~~~~~l~~G~~l~IFPEGtr~ 122 (203)
T cd07992 98 AVFDAVGEALKAGGAIGIFPEGGSH 122 (203)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 3444555555678999999998653
No 114
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=49.82 E-value=63 Score=24.42 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=41.6
Q ss_pred HHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cCCeeeEEEEEEcCCCC
Q 031422 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANNAHYNSIAIIDADGS 114 (160)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~~~~~Ns~~~i~~~G~ 114 (160)
|--.++++++|=|-+. |..+. + ...+.+.|++++++.+..|+++.... +-..+.+..+++ .+|+
T Consensus 150 aL~~~P~lliLDEPt~-GLDp~---------~----~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il-~~G~ 214 (293)
T COG1131 150 ALLHDPELLILDEPTS-GLDPE---------S----RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIIL-NDGK 214 (293)
T ss_pred HHhcCCCEEEECCCCc-CCCHH---------H----HHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEE-eCCE
Confidence 3335789999999654 33211 1 13677889999988876666654332 223446667777 5687
Q ss_pred EeE
Q 031422 115 DLG 117 (160)
Q Consensus 115 i~~ 117 (160)
++.
T Consensus 215 ~~~ 217 (293)
T COG1131 215 IIA 217 (293)
T ss_pred EEE
Confidence 653
No 115
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=49.66 E-value=84 Score=21.68 Aligned_cols=63 Identities=25% Similarity=0.160 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 031422 21 DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (160)
Q Consensus 21 ~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~ 91 (160)
+.+...+.+.+.++.+.+.++.+|++-= + +...+.... .... ....+.+.++++|+++++.++
T Consensus 88 ~~~~~~~nl~~ii~~~~~~~~~~il~tp---~--~~~~~~~~~-~~~~--~~~~~~~~~~~~a~~~~~~~v 150 (198)
T cd01821 88 PYTTYKEYLRRYIAEARAKGATPILVTP---V--TRRTFDEGG-KVED--TLGDYPAAMRELAAEEGVPLI 150 (198)
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEECC---c--cccccCCCC-cccc--cchhHHHHHHHHHHHhCCCEE
Confidence 3455556666666666667888877521 1 111110000 0111 124677899999999998874
No 116
>PRK07534 methionine synthase I; Validated
Probab=49.53 E-value=1.2e+02 Score=23.50 Aligned_cols=27 Identities=7% Similarity=0.220 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecc
Q 031422 22 VSTNLATAERLVRAAHGKGANIILIQE 48 (160)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE 48 (160)
.++-.+.....++...+.++|+++|-=
T Consensus 126 ~~e~~~~~~~qi~~l~~~gvD~l~~ET 152 (336)
T PRK07534 126 HALAVEAFHEQAEGLKAGGADVLWVET 152 (336)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 455566666677776778999999854
No 117
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=49.26 E-value=52 Score=25.68 Aligned_cols=32 Identities=3% Similarity=0.037 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeccccccccc
Q 031422 23 STNLATAERLVRAAHGKGANIILIQELFEGYYF 55 (160)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~ 55 (160)
..+.+++++.++.++..+.|+++-|= +++|+.
T Consensus 238 dYdv~kvle~aE~i~~a~idvlIaPv-~lPG~N 269 (414)
T COG2100 238 DYDVKKVLEVAEYIANAGIDVLIAPV-WLPGVN 269 (414)
T ss_pred ccCHHHHHHHHHHHHhCCCCEEEeee-ecCCcC
Confidence 45677888888888889999999995 666764
No 118
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=49.21 E-value=1.1e+02 Score=22.87 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCcEEEecccccccc
Q 031422 28 TAERLVRAAHGKGANIILIQELFEGYY 54 (160)
Q Consensus 28 ~~~~~i~~a~~~~~dlvv~PE~~~~g~ 54 (160)
.+.+.++...+.|+|.|...|.+.+..
T Consensus 145 ~~~~~~~~~~eaG~d~i~i~dp~~~~~ 171 (306)
T cd00465 145 FILEYAKTLIEAGAKALQIHEPAFSQI 171 (306)
T ss_pred HHHHHHHHHHHhCCCEEEEeccccccc
Confidence 344455555667999999999877543
No 119
>PTZ00261 acyltransferase; Provisional
Probab=49.12 E-value=30 Score=27.12 Aligned_cols=52 Identities=8% Similarity=-0.087 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 031422 26 LATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (160)
Q Consensus 26 ~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~ 91 (160)
.+.+.+.+++..++|-.+++|||..-+--. ... .++..-.-.+|.+.++.|+
T Consensus 201 ~~~v~~~~~e~Lk~G~sLvIFPEGTRS~~g------------g~L--~pFK~GaF~LAieagvPIV 252 (355)
T PTZ00261 201 QAQVQQAIDAHLRLGGSLAFFPEGAINKHP------------QVL--QTFRYGTFATIIKHRMEVY 252 (355)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCcCCcCCC------------CcC--CCCcHHHHHHHHHcCCCEE
Confidence 334555555556678899999998653110 000 1344455566777777763
No 120
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=48.84 E-value=20 Score=23.83 Aligned_cols=41 Identities=7% Similarity=0.039 Sum_probs=23.2
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccccc
Q 031422 11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEG 52 (160)
Q Consensus 11 va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~ 52 (160)
-++.+.+++- ...+-+++.++.++|.+.+..++.||+.+.+
T Consensus 49 ~gi~~~PipI-L~a~~~~L~~l~~~a~~~~i~~~~F~~~aq~ 89 (133)
T PF09391_consen 49 PGISHIPIPI-LKANSEQLRELRQKALEREITVVDFTDEAQS 89 (133)
T ss_dssp ---BSS-EEE-EEE-HHHHHHHHHHHHHTT---EEEEGGGGG
T ss_pred CCCCCcCeEE-EEcCHHHHHHHHHHHHHCCCeEEeChHHHhh
Confidence 3444444411 1235678888888888889999999998775
No 121
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=48.82 E-value=1.2e+02 Score=23.03 Aligned_cols=52 Identities=27% Similarity=0.278 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (160)
Q Consensus 30 ~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (160)
.+.++...+.|+|+|.+.|.+.++.... .+.+.+... ++.+++.+..++.+.
T Consensus 171 ~~~~~~~~~~G~d~i~i~d~~~~~~~is--p~~f~e~~~-----p~~k~i~~~i~~~g~ 222 (330)
T cd03465 171 IRYADALIEAGADGIYISDPWASSSILS--PEDFKEFSL-----PYLKKVFDAIKALGG 222 (330)
T ss_pred HHHHHHHHHhCCCEEEEeCCccccCCCC--HHHHHHHhh-----HHHHHHHHHHHHcCC
Confidence 3444445556999999999765433100 223444443 445555555555444
No 122
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=48.31 E-value=73 Score=20.59 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=31.2
Q ss_pred cccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecccccc
Q 031422 7 REVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEG 52 (160)
Q Consensus 7 ~~~~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~ 52 (160)
...+|+.+...- .+-...+...+++..+-.++++.|++|+..++
T Consensus 4 ~~~~v~~~~s~~--~~i~~~qdalDLi~~~~~~~~~~i~l~~~~l~ 47 (113)
T PF13788_consen 4 NGIRVAEVSSDE--PLISDEQDALDLIGTAYEHGADRIILPKEALS 47 (113)
T ss_pred CCeEEEEEeCCC--CeecchhHHHHHHHHHHHcCCCEEEEEhHHCC
Confidence 345677666542 12233466777888888899999999998885
No 123
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=48.15 E-value=64 Score=24.10 Aligned_cols=42 Identities=7% Similarity=0.136 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 29 AERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 29 ~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
+.++++.+++.|+|-|++|-+.. +....+.+.++++++..+.
T Consensus 108 ~e~F~~~~~~aGvdgviipDLP~----------------------ee~~~~~~~~~~~gi~~I~ 149 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDLPY----------------------EESDYLISVCNLYNIELIL 149 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCCCH----------------------HHHHHHHHHHHHcCCCEEE
Confidence 34455555555666666665421 3344566667777766543
No 124
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=48.10 E-value=24 Score=26.34 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhCCCcEEEeccc
Q 031422 27 ATAERLVRAAHGKGANIILIQEL 49 (160)
Q Consensus 27 ~~~~~~i~~a~~~~~dlvv~PE~ 49 (160)
.++.++++...+.++|+|++.|+
T Consensus 13 ar~~~~~~~l~~~~pDVlclQEt 35 (261)
T COG0708 13 ARLKKLLDWLEEEQPDVLCLQET 35 (261)
T ss_pred HHHHHHHHHHHHhCCCEEEEEec
Confidence 34444555555667899999997
No 125
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=48.07 E-value=99 Score=23.34 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 24 TNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
.|.+..++.++-|++.|-+-+++=|.+-.... . .-.+...+. ...-+..|.+.|++.|+.|++
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~-~----~~~d~~~~~-~~~dl~elv~Ya~~KgVgi~l 91 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEK-D----DDFDFTKPI-PDFDLPELVDYAKEKGVGIWL 91 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS---T----TT--TT-B--TT--HHHHHHHHHHTT-EEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccccc-c----ccccccccC-CccCHHHHHHHHHHcCCCEEE
Confidence 47899999999999999999999887653100 0 011112221 246778899999999965544
No 126
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=47.57 E-value=1.1e+02 Score=22.34 Aligned_cols=62 Identities=8% Similarity=-0.041 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccc-hhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-REDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
.+...+.+.+.++.|..-|+..|+.+= |....+. ..+..+.. ...+..+.+.++++|+.+.+
T Consensus 80 ~~~~~~~~~~~i~~a~~lga~~i~~~~----g~~~~~~~~~~~~~~~-----~~~l~~l~~~a~~~Gv~l~l 142 (258)
T PRK09997 80 EEEFRDGVAAAIRYARALGNKKINCLV----GKTPAGFSSEQIHATL-----VENLRYAANMLMKEDILLLI 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECC----CCCCCCCCHHHHHHHH-----HHHHHHHHHHHHHcCCEEEE
Confidence 345567788899999999999887642 2221111 11111111 14556778888889998876
No 127
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=47.20 E-value=1.1e+02 Score=22.21 Aligned_cols=60 Identities=7% Similarity=-0.053 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeccccccccccccc-hhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 24 TNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-REDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
...+.+++.++.|++-|+..|.++= |...... .++..+.. .+.++.+.+.|++.|+.+.+
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~----g~~~~~~~~~~~~~~~-----~~~l~~l~~~A~~~gi~l~l 141 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLA----GKRPAGVSPEEARATL-----VENLRYAADALDRIGLTLLI 141 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECc----CCCCCCCCHHHHHHHH-----HHHHHHHHHHHHhcCCEEEE
Confidence 3456777888889988999886542 2221111 11111111 15567778889999998876
No 128
>PF10042 DUF2278: Uncharacterized conserved protein (DUF2278); InterPro: IPR019268 This entry consists of hypothetical proteins with no known function.
Probab=46.80 E-value=32 Score=24.75 Aligned_cols=32 Identities=19% Similarity=0.088 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeccccccc
Q 031422 22 VSTNLATAERLVRAAHGKGANIILIQELFEGY 53 (160)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g 53 (160)
-....+.+..++..|.++++++.+|.|.+.+|
T Consensus 117 ~ndl~d~Le~~l~~A~~~~~~iyvFG~~F~~g 148 (206)
T PF10042_consen 117 DNDLNDDLEPYLQRAISDDATIYVFGEPFRPG 148 (206)
T ss_pred cchHHHHHHHHHHHHHhCCCEEEEECceecCC
Confidence 34456778888999989999999999998766
No 129
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=46.50 E-value=22 Score=23.04 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=23.5
Q ss_pred HHHHHHHcCcEEEeccccccCCee---eEEEEEEcCCCCEeEEee
Q 031422 79 MQELAKELGVVMPVSFFEEANNAH---YNSIAIIDADGSDLGLYR 120 (160)
Q Consensus 79 l~~~a~~~~i~i~~g~~~~~~~~~---~Ns~~~i~~~G~i~~~y~ 120 (160)
...+++.+++...-.... ..+.. -.+.++++++|+++..|+
T Consensus 98 ~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 98 IEALAKAFGVYYEKVPED-DGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred HHHHHHHhcEEEEecCCC-CCceeEeccceEEEECCCCCEEEeec
Confidence 455666666554432110 01111 236899999999988775
No 130
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=46.48 E-value=60 Score=24.30 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhCCCcE-EEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe-ccc
Q 031422 24 TNLATAERLVRAAHGKGANI-ILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFF 95 (160)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dl-vv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~-g~~ 95 (160)
.+.+...+..+.|.+.|+|- ++.|=.+... . +....+.+++++...++.+++ ..|
T Consensus 77 ~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~-~----------------~~~i~~~~~~i~~~~~~pi~lYn~P 133 (285)
T TIGR00674 77 NATEEAISLTKFAEDVGADGFLVVTPYYNKP-T----------------QEGLYQHFKAIAEEVDLPIILYNVP 133 (285)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCcCCCC-C----------------HHHHHHHHHHHHhcCCCCEEEEECc
Confidence 35677888888898999995 5555433211 0 125556666666666666654 444
No 131
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=46.24 E-value=44 Score=25.06 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhc-cc----CCCChHHHHHHHHHHHcCcEEEecccc
Q 031422 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRA-KP----YKDHPTILKMQELAKELGVVMPVSFFE 96 (160)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~-~~----~~~~~~~~~l~~~a~~~~i~i~~g~~~ 96 (160)
+-..++++.+.+++..+. ..+-+.|=+ ++=-+.-+..+.+.+.. +. +.-....+++++.|+++.++...|-..
T Consensus 155 CPdELeKm~~~Vd~i~~~-~~~~~~PlF-IsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d 232 (280)
T KOG2792|consen 155 CPDELEKMSAVVDEIEAK-PGLPPVPLF-ISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKD 232 (280)
T ss_pred ChHHHHHHHHHHHHHhcc-CCCCccceE-EEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCC
Confidence 456678888888876443 233222432 22111111111111110 00 001246688999999999999887433
Q ss_pred ccCCeee---EEEEEEcCCCCEeEEeeecc
Q 031422 97 EANNAHY---NSIAIIDADGSDLGLYRKSH 123 (160)
Q Consensus 97 ~~~~~~~---Ns~~~i~~~G~i~~~y~K~~ 123 (160)
.+++=+. --.++++|+|+.+..|-+.+
T Consensus 233 ~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~ 262 (280)
T KOG2792|consen 233 EDQDYLVDHSIFMYLIDPEGEFVDYYGRNY 262 (280)
T ss_pred CCCCeeeeeeEEEEEECCCcceehhhcccC
Confidence 3222222 22578899999887666553
No 132
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=46.00 E-value=1.3e+02 Score=23.45 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEeccc----ccc------cccc-ccc----hhhHhhhcccCCCChHHHHHHHHHHH
Q 031422 21 DVSTNLATAERLVRAAHGKGANIILIQEL----FEG------YYFC-QAQ----REDFFQRAKPYKDHPTILKMQELAKE 85 (160)
Q Consensus 21 ~~~~n~~~~~~~i~~a~~~~~dlvv~PE~----~~~------g~~~-~~~----~~~~~~~~~~~~~~~~~~~l~~~a~~ 85 (160)
+-..-+++..+.++.|++.|||+|=|.=. .++ .|.. ..| ..++.+.++. +.++...|.+.|++
T Consensus 24 NHnG~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~--p~e~~~~Lke~a~~ 101 (347)
T COG2089 24 NHNGDLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAET--PLEWHAQLKEYARK 101 (347)
T ss_pred cccCcHHHHHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcC--CHHHHHHHHHHHHH
Confidence 45555788899999999999999976542 222 1110 001 1233333332 35788899999999
Q ss_pred cCcEEEeccc
Q 031422 86 LGVVMPVSFF 95 (160)
Q Consensus 86 ~~i~i~~g~~ 95 (160)
.|+.+..+-+
T Consensus 102 ~Gi~~~SSPf 111 (347)
T COG2089 102 RGIIFFSSPF 111 (347)
T ss_pred cCeEEEecCC
Confidence 9998876533
No 133
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=45.05 E-value=1.2e+02 Score=22.85 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEecccccccc
Q 031422 20 DDVSTNLATAERLVRAAHGKGANIILIQELFEGYY 54 (160)
Q Consensus 20 ~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~ 54 (160)
.+.++.++++.+.++.|++.|..+.+-.|.+.++|
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~ 142 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM 142 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC
Confidence 45788889999999999999999999999855444
No 134
>cd06168 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm9 proteins have a single Sm-like domain structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=45.03 E-value=20 Score=21.23 Aligned_cols=16 Identities=13% Similarity=-0.056 Sum_probs=11.6
Q ss_pred eEEeCCee--EEEEeccC
Q 031422 145 VFQTKFAK--IGVGKGFY 160 (160)
Q Consensus 145 v~~~~~~r--ig~~ICy~ 160 (160)
.+.+.++| +|.+.|||
T Consensus 14 ~V~l~dgR~~~G~l~~~D 31 (75)
T cd06168 14 RIHMTDGRTLVGVFLCTD 31 (75)
T ss_pred EEEEcCCeEEEEEEEEEc
Confidence 44556665 79999998
No 135
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=45.00 E-value=74 Score=19.68 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEeee
Q 031422 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRK 121 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~K 121 (160)
.-+..+.+.+.+.++.+...-.........++..+.+|+|..+..+.+
T Consensus 70 ~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 70 EEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred HHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 335666777777888876431111112234678899999998876554
No 136
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.95 E-value=56 Score=20.03 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=17.4
Q ss_pred ChHHHHHHHHHHHcCcEEEec
Q 031422 73 HPTILKMQELAKELGVVMPVS 93 (160)
Q Consensus 73 ~~~~~~l~~~a~~~~i~i~~g 93 (160)
......+++.|++++++++..
T Consensus 61 H~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 61 HNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred hHHHHHHHHHHHHcCCcEEEE
Confidence 466788999999999998764
No 137
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=44.75 E-value=32 Score=24.99 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEe
Q 031422 20 DDVSTNLATAERLVRAAHGKGANIILI 46 (160)
Q Consensus 20 ~~~~~n~~~~~~~i~~a~~~~~dlvv~ 46 (160)
+|+-.|...+.++++.+.+.++|+||.
T Consensus 11 SDiHgn~~~le~l~~~~~~~~~D~vv~ 37 (224)
T cd07388 11 SNPKGDLEALEKLVGLAPETGADAIVL 37 (224)
T ss_pred EecCCCHHHHHHHHHHHhhcCCCEEEE
Confidence 377778888988888887789998764
No 138
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=44.17 E-value=1.4e+02 Score=22.49 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=25.6
Q ss_pred HHHHHHHcCcEEEeccccc--cCCeeeEEEEEEcCCCCEeE
Q 031422 79 MQELAKELGVVMPVSFFEE--ANNAHYNSIAIIDADGSDLG 117 (160)
Q Consensus 79 l~~~a~~~~i~i~~g~~~~--~~~~~~Ns~~~i~~~G~i~~ 117 (160)
++..|.+++++++...... .+..++=.+.+++|+|+++.
T Consensus 219 ~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p~G~vla 259 (302)
T cd07569 219 MQAGAYQNGTWVVAAAKAGMEDGCDLIGGSCIVAPTGEIVA 259 (302)
T ss_pred HhhhhhcccceEEEeeccccCCCceEecceEEECCCCCEEE
Confidence 3445778889987643322 23455666788889999863
No 139
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=43.71 E-value=24 Score=25.65 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=36.1
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc--EEEeccc
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV--VMPVSFF 95 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i--~i~~g~~ 95 (160)
.+++|.+.++|+|.|.-+..+||.+-...+..+....|..-...-..+++++..++. -+-.|.|
T Consensus 146 V~~k~re~di~~vafGDlLs~G~~svy~eD~i~rlnlPAflAltK~Elr~il~~~~~e~~~kygCP 211 (255)
T COG1365 146 VMDKARELDIDVVAFGDLLSTGYGSVYREDGIFRLNLPAFLALTKDELRSILKWNGYELEMKYGCP 211 (255)
T ss_pred HHHHHHhcCCeEEEEcccccccccceeccCCEEEEccHHHHhhCcHHHHHHHHhcCccchhccCCc
Confidence 344566779999999999999986543322232222221112233556777766655 3333444
No 140
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=43.18 E-value=75 Score=24.21 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhCCCc-EEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHc-CcEEEe
Q 031422 24 TNLATAERLVRAAHGKGAN-IILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL-GVVMPV 92 (160)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~d-lvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-~i~i~~ 92 (160)
.+++...+..+.|.+.|+| ++|+|=.+... . +....+.+++++... ++++++
T Consensus 87 ~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~---~--------------~~~l~~yf~~va~a~~~lPv~i 140 (309)
T cd00952 87 LNTRDTIARTRALLDLGADGTMLGRPMWLPL---D--------------VDTAVQFYRDVAEAVPEMAIAI 140 (309)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCCcCCCC---C--------------HHHHHHHHHHHHHhCCCCcEEE
Confidence 4567788888888889999 45555443221 0 125556666666666 466654
No 141
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=42.23 E-value=88 Score=23.39 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhCCCcEE-EeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe-ccc
Q 031422 25 NLATAERLVRAAHGKGANII-LIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFF 95 (160)
Q Consensus 25 n~~~~~~~i~~a~~~~~dlv-v~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~-g~~ 95 (160)
+.++..+.++.|.+.|+|-+ +.|=++.. . ......+.+++++...++.+++ -.|
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~P~~~~-~----------------s~~~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIPPYYFK-P----------------SQEELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEESTSSS-C----------------CHHHHHHHHHHHHHHSSSEEEEEEBH
T ss_pred hHHHHHHHHHHHhhcCceEEEEecccccc-c----------------hhhHHHHHHHHHHhhcCCCEEEEECC
Confidence 35677777888888899965 34332221 0 0135677788888888888876 444
No 142
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=42.13 E-value=96 Score=23.08 Aligned_cols=86 Identities=13% Similarity=0.164 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhCCCcEEEeccccccccccccchh---hHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccccC---Ce
Q 031422 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQRE---DFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN---NA 101 (160)
Q Consensus 28 ~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~---~~ 101 (160)
.+-..+|.|...|++-|++|.-...++...-++. ..+.... .........+.++.++.|.++++....... ..
T Consensus 122 NlGaIiRtA~a~Gv~~Vi~~~~~~~~~~~~v~r~s~Ga~~~vp~-~~~~n~~~~~~~~~~~~G~~v~~t~~~~~~~~~~~ 200 (260)
T COG0566 122 NLGAIIRTADAFGVDGVILPKRRADPLNPKVIRASAGAAFHVPV-IRVTNLARTLLELLKEAGFWVVATSLDGEVDLYET 200 (260)
T ss_pred chhhHHhhHHHhCCCEEEECCCccCCccceeEEecCChheecee-EEEeccHHHHHHHHHHcCeEEEEECCCCCcchhhc
Confidence 3445667777779999999997655554332211 1111110 000124567788888899999887665511 11
Q ss_pred e--eEEEEEEcCCCC
Q 031422 102 H--YNSIAIIDADGS 114 (160)
Q Consensus 102 ~--~Ns~~~i~~~G~ 114 (160)
. -..+++++.+|+
T Consensus 201 ~~~~~~aLvlG~Eg~ 215 (260)
T COG0566 201 DLPKKTALVLGNEGE 215 (260)
T ss_pred cccCCEEEEECCCCC
Confidence 1 255788887774
No 143
>PLN02591 tryptophan synthase
Probab=42.08 E-value=1.1e+02 Score=22.66 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHcCcEEEe
Q 031422 74 PTILKMQELAKELGVVMPV 92 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~ 92 (160)
+..+.+.+.++++++..+.
T Consensus 118 ee~~~~~~~~~~~gl~~I~ 136 (250)
T PLN02591 118 EETEALRAEAAKNGIELVL 136 (250)
T ss_pred HHHHHHHHHHHHcCCeEEE
Confidence 4455677778888876544
No 144
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=41.84 E-value=93 Score=22.56 Aligned_cols=43 Identities=21% Similarity=0.179 Sum_probs=26.5
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g 93 (160)
..+.|.++++|++.-|+.--- ++.+-..+.++|.++++.|-+.
T Consensus 94 vNR~AvE~~VDVL~~P~~~Rk-------------------d~g~dHVLAKlAa~n~VAIe~~ 136 (216)
T PRK03892 94 VNRYAIERGVDAIISPWVGRK-------------------DPGIDHVLARMAAKRGVAIGFS 136 (216)
T ss_pred HHHHHHhcccceeecccccCc-------------------CCCccHHHHHHHHHcCeEEEEe
Confidence 445566678999999985310 1233345667777777776554
No 145
>cd07991 LPLAT_LPCAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lysophosphatidylcholine acyltransferase 1 (LPCAT-1), glycerol-3-phosphate acyltransferase 3 (GPAT3), and similar sequences.
Probab=41.73 E-value=40 Score=23.93 Aligned_cols=14 Identities=14% Similarity=0.059 Sum_probs=11.5
Q ss_pred CCCcEEEecccccc
Q 031422 39 KGANIILIQELFEG 52 (160)
Q Consensus 39 ~~~dlvv~PE~~~~ 52 (160)
.+-.+++|||...+
T Consensus 96 ~g~~v~iFPEGtrs 109 (211)
T cd07991 96 NWPPILIFPEGTTT 109 (211)
T ss_pred CCCeEEEecCcccc
Confidence 46889999998664
No 146
>PRK14014 putative acyltransferase; Provisional
Probab=41.66 E-value=39 Score=25.74 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEeccccc
Q 031422 26 LATAERLVRAAHGKGANIILIQELFE 51 (160)
Q Consensus 26 ~~~~~~~i~~a~~~~~dlvv~PE~~~ 51 (160)
.+.+.+..+...+.+..+++|||..-
T Consensus 160 ~~~~~~a~~~~~~~~~~l~IFPEGTR 185 (301)
T PRK14014 160 LETTRRACEKFKRMPTTIVNFVEGTR 185 (301)
T ss_pred HHHHHHHHHHHhcCCcEEEEecccee
Confidence 34444555555556778999999744
No 147
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=41.58 E-value=85 Score=24.60 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=39.2
Q ss_pred HHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcCCCC
Q 031422 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGS 114 (160)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~~G~ 114 (160)
|-.+++|++++-|.|..- +|+...+.-++|.++-++.+-.|++ +.-..+.=++=+..++. .+|+
T Consensus 178 Ala~~~~IlLMDEaFSAL--------------DPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaim-kdG~ 242 (386)
T COG4175 178 ALANDPDILLMDEAFSAL--------------DPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIM-KDGE 242 (386)
T ss_pred HHccCCCEEEecCchhhc--------------ChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEe-cCCe
Confidence 445799999999975521 1111134455667776666555544 54433334555666666 6788
Q ss_pred EeE
Q 031422 115 DLG 117 (160)
Q Consensus 115 i~~ 117 (160)
++.
T Consensus 243 ivQ 245 (386)
T COG4175 243 IVQ 245 (386)
T ss_pred EEE
Confidence 764
No 148
>PLN02833 glycerol acyltransferase family protein
Probab=41.58 E-value=59 Score=25.70 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHh--CCCcEEEecccccc
Q 031422 27 ATAERLVRAAHG--KGANIILIQELFEG 52 (160)
Q Consensus 27 ~~~~~~i~~a~~--~~~dlvv~PE~~~~ 52 (160)
+.+.+.+++... .|..+++|||..-+
T Consensus 222 ~~~~~~l~~~l~~~~G~~llIFPEGTrs 249 (376)
T PLN02833 222 EVVAKKLRDHVQDPDRNPLLIFPEGTCV 249 (376)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCcccc
Confidence 344444444333 57889999998554
No 149
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=41.30 E-value=71 Score=22.76 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCcEEEeccccc
Q 031422 77 LKMQELAKELGVVMPVSFFEE 97 (160)
Q Consensus 77 ~~l~~~a~~~~i~i~~g~~~~ 97 (160)
..+.+.++++++..+-|....
T Consensus 91 ~~v~~~~~~~~i~~iPG~~Tp 111 (196)
T PF01081_consen 91 PEVIEYAREYGIPYIPGVMTP 111 (196)
T ss_dssp HHHHHHHHHHTSEEEEEESSH
T ss_pred HHHHHHHHHcCCcccCCcCCH
Confidence 457888889999999886643
No 150
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=40.75 E-value=61 Score=23.85 Aligned_cols=56 Identities=9% Similarity=0.030 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe-ccccccCCeeeE
Q 031422 26 LATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFFEEANNAHYN 104 (160)
Q Consensus 26 ~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~N 104 (160)
.+++.+..+...+.|+|.|++|-. + .+..++++++..+++++ |.....++++..
T Consensus 155 ~~~ai~Ra~ay~~AGAd~i~~e~~--~-----------------------~e~~~~i~~~~~~P~~~~gag~~~dgq~lv 209 (240)
T cd06556 155 GEQLIADALAYAPAGADLIVMECV--P-----------------------VELAKQITEALAIPLAGIGAGSGTDGQFLV 209 (240)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCC--C-----------------------HHHHHHHHHhCCCCEEEEecCcCCCceEEe
Confidence 444444455556679999998731 1 13355666667777765 555545555444
Q ss_pred EE
Q 031422 105 SI 106 (160)
Q Consensus 105 s~ 106 (160)
..
T Consensus 210 ~~ 211 (240)
T cd06556 210 LA 211 (240)
T ss_pred HH
Confidence 33
No 151
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=40.38 E-value=89 Score=19.29 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEee
Q 031422 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~ 120 (160)
.-++.+.+.+++.|+.+.-+ +.........+.++.+|+|..+..+.
T Consensus 72 ~dv~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~DPdG~~ve~~~ 117 (121)
T cd07266 72 EDLDKAEAFFQELGLPTEWV-EAGEEPGQGRALRVEDPLGFPIEFYA 117 (121)
T ss_pred HHHHHHHHHHHHcCCCcccc-cCCcCCCCccEEEEECCCCCEEEEEe
Confidence 45666777777778776433 22222122246889999998876553
No 152
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=39.23 E-value=1.2e+02 Score=22.51 Aligned_cols=16 Identities=31% Similarity=0.183 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHcCcEE
Q 031422 75 TILKMQELAKELGVVM 90 (160)
Q Consensus 75 ~~~~l~~~a~~~~i~i 90 (160)
....+.+.++++++..
T Consensus 128 e~~~~~~~~~~~gl~~ 143 (256)
T TIGR00262 128 ESGDLVEAAKKHGVKP 143 (256)
T ss_pred HHHHHHHHHHHCCCcE
Confidence 3455666777777553
No 153
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.23 E-value=1.2e+02 Score=22.61 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHcCcEEEe
Q 031422 74 PTILKMQELAKELGVVMPV 92 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~ 92 (160)
+..+.+.+.++++++..+.
T Consensus 129 ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 129 EEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred HHHHHHHHHHHHcCCcEEE
Confidence 4455677777888876654
No 154
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=39.22 E-value=94 Score=23.30 Aligned_cols=52 Identities=15% Similarity=0.175 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEe-ccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 24 TNLATAERLVRAAHGKGANIILI-QELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dlvv~-PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
.+++...+.++.|.+.|+|-|+. |=.+... . +....+.+++++...++.+++
T Consensus 80 ~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~-~----------------~~~i~~~~~~ia~~~~~pv~l 132 (292)
T PRK03170 80 NSTAEAIELTKFAEKAGADGALVVTPYYNKP-T----------------QEGLYQHFKAIAEATDLPIIL 132 (292)
T ss_pred chHHHHHHHHHHHHHcCCCEEEECCCcCCCC-C----------------HHHHHHHHHHHHhcCCCCEEE
Confidence 45678888888888889996554 4332210 0 125556666776666666654
No 155
>KOG3446 consensus NADH:ubiquinone oxidoreductase NDUFA2/B8 subunit [Energy production and conversion]
Probab=39.14 E-value=55 Score=20.02 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=28.4
Q ss_pred CcccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcE-EEecccc
Q 031422 6 RREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANI-ILIQELF 50 (160)
Q Consensus 6 ~~~~~va~~Q~~~-~~~~~~n~~~~~~~i~~a~~~~~dl-vv~PE~~ 50 (160)
.+.+||-++|-.+ ++.....+++.-.-+++ .++|| |+.-|++
T Consensus 15 lkElRI~lcqkspaSagvR~fvEk~Y~~lKk---aNP~lPILIREcS 58 (97)
T KOG3446|consen 15 LKELRIHLCQKSPASAGVREFVEKFYVNLKK---ANPDLPILIRECS 58 (97)
T ss_pred hhhheeeecCCCCcchhHHHHHHHhhhhhhh---cCCCCcEeehhhc
Confidence 3568999999988 55566666655554544 47888 6666763
No 156
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=39.03 E-value=1.2e+02 Score=20.45 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=39.0
Q ss_pred EEEEEeCCC---C--CCHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHH
Q 031422 10 VVSALQFAC---T--DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAK 84 (160)
Q Consensus 10 ~va~~Q~~~---~--~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 84 (160)
.+.++++.. . .+.++..+.+.++++.+.+.++.+|+.-- ++.....+.......... ...+-+.++++++
T Consensus 61 d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~---~p~~~~~~~~~~~~~~~~--~~~~n~~~~~~a~ 135 (183)
T cd04501 61 AVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASP---LPVDDYPWKPQWLRPANK--LKSLNRWLKDYAR 135 (183)
T ss_pred CEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeC---CCcCccccchhhcchHHH--HHHHHHHHHHHHH
Confidence 455666543 1 23555566666677766677888777531 111100000000000011 1356667888898
Q ss_pred HcCcEEE
Q 031422 85 ELGVVMP 91 (160)
Q Consensus 85 ~~~i~i~ 91 (160)
+.++.++
T Consensus 136 ~~~v~~v 142 (183)
T cd04501 136 ENGLLFL 142 (183)
T ss_pred HcCCCEE
Confidence 8887664
No 157
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=38.97 E-value=1.1e+02 Score=22.92 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=39.4
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccc-ccCCeeeEEEEEEc
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANNAHYNSIAIID 110 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~~~~~~~Ns~~~i~ 110 (160)
++..|-.+++|++++=|-+.. -+ ... ...+.+.|.++.++ |+.|++-... ..-..+++..+.++
T Consensus 149 ~lARAL~~~p~lllLDEP~~g-vD---------~~~----~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln 213 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTG-VD---------VAG----QKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLN 213 (254)
T ss_pred HHHHHhccCCCEEEecCCccc-CC---------HHH----HHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEc
Confidence 555566679999999996552 11 111 13677778888877 7777653222 22245666666664
No 158
>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p
Probab=38.14 E-value=1.1e+02 Score=20.82 Aligned_cols=55 Identities=15% Similarity=0.082 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhC-CCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccc
Q 031422 27 ATAERLVRAAHGK-GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (160)
Q Consensus 27 ~~~~~~i~~a~~~-~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~ 96 (160)
+.++..++.. ++ +..+++|||....... .. ...+..-...+|++.++.|+.-...
T Consensus 88 ~~~~~~~~~l-~~~g~~v~ifPeG~~~~~~-----------~~---~~~~~~g~~~la~~~~~~IvPv~i~ 143 (187)
T cd06551 88 KSLKYVARLL-SKPGSVVWIFPEGTRTRRD-----------KR---PLQFKPGVAHLAEKAGVPIVPVALR 143 (187)
T ss_pred HHHHHHHHHH-hcCCcEEEEeCCcccCCCC-----------CC---cccccchHHHHHHHcCCcEEEEEEe
Confidence 3344444444 45 8999999997643211 00 1234455677788888888764343
No 159
>smart00642 Aamy Alpha-amylase domain.
Probab=38.10 E-value=1.3e+02 Score=20.58 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEecccccc--------ccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc
Q 031422 26 LATAERLVRAAHGKGANIILIQELFEG--------YYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE 97 (160)
Q Consensus 26 ~~~~~~~i~~a~~~~~dlvv~PE~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~ 97 (160)
++.+.+.+...++.|++.|.++=.+-. ||... ++..........+-++.|.+.+.+.+|.+++=.+..
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~----d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDIS----DYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCcc----ccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 455555556666789999877654322 22222 233333333344667788888899999998754443
No 160
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=37.45 E-value=1e+02 Score=27.60 Aligned_cols=48 Identities=13% Similarity=-0.013 Sum_probs=30.9
Q ss_pred HHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 30 ~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
.+.+.++.++|-.++||||...+.-. + -.++..-...+|.+.++.|+-
T Consensus 501 ~~~~~~~l~~g~~~~ifPeGt~~~~~------------~---~~~~~~g~~~~a~~~~~~i~p 548 (1146)
T PRK08633 501 LEFIRKALDDGEVVCIFPEGAITRNG------------Q---LNEFKRGFELIVKGTDVPIIP 548 (1146)
T ss_pred HHHHHHHHhCCCEEEEECCcCCCCCC------------C---ccchhHHHHHHHHHCCCCEEE
Confidence 33444555677899999998654111 0 124556777888888888754
No 161
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=37.44 E-value=19 Score=27.17 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=20.7
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecc
Q 031422 14 LQFACTDDVSTNLATAERLVRAAHGKGANIILIQE 48 (160)
Q Consensus 14 ~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE 48 (160)
.|++...|.+..-..+.+-++.+.+.|+|+|..|.
T Consensus 60 ~QF~~~eD~~~YPR~~e~D~~ll~~~gvD~vF~Ps 94 (280)
T PF02569_consen 60 TQFGPNEDFDKYPRTLERDLELLEKAGVDAVFAPS 94 (280)
T ss_dssp GGSSTTSHTTTS---HHHHHHHHHHTT-SEEE---
T ss_pred ccCCCcchhhhCCCChHHHHHHHhccCCCEEEcCC
Confidence 46666556665566677777777788999999996
No 162
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=37.21 E-value=1.4e+02 Score=21.29 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcCCCCEeEEe
Q 031422 74 PTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSDLGLY 119 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~~G~i~~~y 119 (160)
...+.|.++.++.+..+++ +.....-.. .+..+++ .+|+++..+
T Consensus 183 ~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l-~~G~i~~~~ 227 (233)
T PRK11629 183 SIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEM-RDGRLTAEL 227 (233)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEE-ECCEEEEEe
Confidence 4455666666555555544 433221122 2345566 468776444
No 163
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=37.01 E-value=1.9e+02 Score=22.11 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHc
Q 031422 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (160)
Q Consensus 30 ~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 86 (160)
.++++...+.|+|+|...+.+-+ +.. .+.|.++.. ++..++.+..++.
T Consensus 180 ~~~~~~~ieaGad~i~i~d~~~~-~ls---p~~f~ef~~-----P~~k~i~~~i~~~ 227 (335)
T cd00717 180 IEYLKAQIEAGAQAVQIFDSWAG-ALS---PEDFEEFVL-----PYLKRIIEEVKKR 227 (335)
T ss_pred HHHHHHHHHhCCCEEEEeCcccc-cCC---HHHHHHHHH-----HHHHHHHHHHHHh
Confidence 34444445679999988886332 211 223445544 4445555555554
No 164
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=36.87 E-value=1.3e+02 Score=20.24 Aligned_cols=64 Identities=20% Similarity=0.128 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 031422 21 DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (160)
Q Consensus 21 ~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~ 91 (160)
+.++..+.+.+.++++...+++++++.-.-..+.. ......... -..+-+.+++++++.++.++
T Consensus 86 ~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~~~~~--~~~~~~~~~-----~~~~n~~l~~~a~~~~v~~v 149 (185)
T cd01832 86 DPDTYRADLEEAVRRLRAAGARVVVFTIPDPAVLE--PFRRRVRAR-----LAAYNAVIRAVAARYGAVHV 149 (185)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEecCCCccccc--hhHHHHHHH-----HHHHHHHHHHHHHHcCCEEE
Confidence 34455566666666666678888887432110110 000001111 12556778899998887765
No 165
>PRK12677 xylose isomerase; Provisional
Probab=36.74 E-value=2.1e+02 Score=22.64 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhCCCcE-EEec
Q 031422 23 STNLATAERLVRAAHGKGANI-ILIQ 47 (160)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dl-vv~P 47 (160)
+..++.+++.|+.|++-|++. ++||
T Consensus 110 ~~Ai~~~~r~IdlA~eLGa~~Vvv~~ 135 (384)
T PRK12677 110 RYALRKVLRNIDLAAELGAKTYVMWG 135 (384)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 345778899999999999985 4554
No 166
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=36.55 E-value=30 Score=21.79 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhCCCcE-EEeccccc
Q 031422 25 NLATAERLVRAAHGKGANI-ILIQELFE 51 (160)
Q Consensus 25 n~~~~~~~i~~a~~~~~dl-vv~PE~~~ 51 (160)
+......+++-|.+++.|+ ||-||..+
T Consensus 47 ~~~d~~~l~~~a~~~~idlvvvGPE~pL 74 (100)
T PF02844_consen 47 DITDPEELADFAKENKIDLVVVGPEAPL 74 (100)
T ss_dssp -TT-HHHHHHHHHHTTESEEEESSHHHH
T ss_pred CCCCHHHHHHHHHHcCCCEEEECChHHH
Confidence 4455666666677778887 55677433
No 167
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=36.38 E-value=1.1e+02 Score=19.81 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCcEEEecc
Q 031422 19 TDDVSTNLATAERLVRAAHGKGANIILIQE 48 (160)
Q Consensus 19 ~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE 48 (160)
..|..+-..++-..++++-+.++|.|+...
T Consensus 77 ~~d~~~~A~~Lf~~LR~~D~~~~~~I~ie~ 106 (125)
T PF03481_consen 77 PGDPEEAARNLFAALRELDELGVDLILIEG 106 (125)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCCEEEEee
Confidence 468888899999999999888999999875
No 168
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=36.13 E-value=1.5e+02 Score=21.15 Aligned_cols=62 Identities=18% Similarity=0.041 Sum_probs=34.4
Q ss_pred HHHHHHHHHHH-HhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecc
Q 031422 26 LATAERLVRAA-HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (160)
Q Consensus 26 ~~~~~~~i~~a-~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~ 94 (160)
++.+...++.+ ...++++||+==+...-... ....+... -..+...|+++|+++++++++-.
T Consensus 108 ~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~-~~~~~~~~------~~~~~~~L~~la~~~~~~ii~~~ 170 (242)
T cd00984 108 VSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK-KKGNRQQE------VAEISRSLKLLAKELNVPVIALS 170 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC-CCCCHHHH------HHHHHHHHHHHHHHhCCeEEEec
Confidence 34455555543 23489999886543321110 00000001 12567889999999999998843
No 169
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.01 E-value=1.6e+02 Score=20.84 Aligned_cols=45 Identities=9% Similarity=0.095 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcC-CCCEeEE
Q 031422 74 PTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDA-DGSDLGL 118 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~-~G~i~~~ 118 (160)
.+.+.++++.++.+..+++ +.....-..+.+..+++.. +|++...
T Consensus 169 ~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~ 215 (220)
T cd03293 169 QLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215 (220)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEE
Confidence 4556667766665555544 4222212345566677754 6876543
No 170
>KOG2848 consensus 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid transport and metabolism]
Probab=35.62 E-value=72 Score=23.92 Aligned_cols=31 Identities=6% Similarity=0.080 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEeccccc
Q 031422 21 DVSTNLATAERLVRAAHGKGANIILIQELFE 51 (160)
Q Consensus 21 ~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~ 51 (160)
+.+..++.+.+..+..+.++..+-||||..=
T Consensus 144 r~~~Ai~~l~~~~~~mkk~~~kvWvFPEGTR 174 (276)
T KOG2848|consen 144 RREKAIDTLDKCAERMKKENRKVWVFPEGTR 174 (276)
T ss_pred CHHHHHHHHHHHHHHHHhCCeeEEEccCCcc
Confidence 4677788888888888889999999999744
No 171
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=35.60 E-value=1.6e+02 Score=22.41 Aligned_cols=53 Identities=25% Similarity=0.227 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (160)
Q Consensus 27 ~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (160)
+.+.++++...+.|+|+|.+.+ +..++.. .+.+.+... ++..++.+..++.+.
T Consensus 182 ~~~~~~~~~~~~~G~d~i~~~d-~~~~~is---p~~f~e~~~-----P~~k~i~~~i~~~g~ 234 (343)
T PF01208_consen 182 DFIIEYAKAQIEAGADGIFIFD-SSGSLIS---PEMFEEFIL-----PYLKKIIDAIKEAGK 234 (343)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEE-TTGGGS----HHHHHHHTH-----HHHHHHHHHHHHHET
T ss_pred HHHHHHHHHHHHhCCCcccccc-cccCCCC---HHHHHHHHH-----HHHHHHHHHHHHhCC
Confidence 3444455556778999999999 3322221 223445544 566777777777665
No 172
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=35.09 E-value=1.5e+02 Score=25.81 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecccccc
Q 031422 22 VSTNLATAERLVRAAHGKGANIILIQELFEG 52 (160)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~ 52 (160)
++.-.+.+.+.++..-...-+++|+|=++.-
T Consensus 486 IEt~~e~l~~~~~~LGski~eliv~PiYaNL 516 (902)
T KOG0923|consen 486 IETVKENLKERCRRLGSKIRELIVLPIYANL 516 (902)
T ss_pred HHHHHHHHHHHHHHhccccceEEEeeccccC
Confidence 4455556666666677778999999988764
No 173
>PRK09453 phosphodiesterase; Provisional
Probab=35.00 E-value=63 Score=22.22 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEe
Q 031422 21 DVSTNLATAERLVRAAHGKGANIILI 46 (160)
Q Consensus 21 ~~~~n~~~~~~~i~~a~~~~~dlvv~ 46 (160)
|.-.|...+.++++.+.+.++|.|++
T Consensus 8 D~Hg~~~~~~~~l~~~~~~~~d~ii~ 33 (182)
T PRK09453 8 DTHGSLPATEKALELFAQSGADWLVH 33 (182)
T ss_pred eccCCHHHHHHHHHHHHhcCCCEEEE
Confidence 44444555666666666678887765
No 174
>KOG1505 consensus Lysophosphatidic acid acyltransferase LPAAT and related acyltransferases [Lipid transport and metabolism]
Probab=34.97 E-value=59 Score=25.40 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEecccc
Q 031422 24 TNLATAERLVRAAHGKGANIILIQELF 50 (160)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dlvv~PE~~ 50 (160)
+.+.+..+.++.. +..-.|++|||.+
T Consensus 136 ~~l~~~~k~l~~~-~~~~wLlLFPEGT 161 (346)
T KOG1505|consen 136 KTLISLLKHLKDS-PDPYWLLLFPEGT 161 (346)
T ss_pred HHHHHHHHHhccC-CCceEEEEecCCC
Confidence 3344444444444 3457899999975
No 175
>TIGR00256 D-tyrosyl-tRNA(Tyr) deacylase. This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterization with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader.
Probab=34.79 E-value=48 Score=22.44 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=38.6
Q ss_pred HHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccc
Q 031422 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (160)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~ 95 (160)
..+-+.++++-|-..+.|-....-+.++...+.+....+..+.+.+..++.+..+-.|.+
T Consensus 66 v~d~~geiL~VSQFTL~a~~~KG~rPsF~~a~~~~~A~~ly~~fv~~l~~~~~~V~~G~F 125 (145)
T TIGR00256 66 VQQAGGEILSVSQFTLAADTKKGMRPSFSKGASPDRAEELYEYFVELCREKGMKVQTGRF 125 (145)
T ss_pred HHHCCCCEEEEECCcccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCCCceECcc
Confidence 445578999999999977553444555665555543445666777777776655545543
No 176
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=34.75 E-value=1.1e+02 Score=18.73 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHcCcEEEeccccc-cCCeeeEEEEEEcCCCCEeEEe
Q 031422 74 PTILKMQELAKELGVVMPVSFFEE-ANNAHYNSIAIIDADGSDLGLY 119 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~-~~~~~~Ns~~~i~~~G~i~~~y 119 (160)
.-++.+.+.+++.++.+..+-... .+.. ...+.+.+|+|..+..+
T Consensus 70 ~~l~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~~~DP~G~~iel~ 115 (120)
T cd08362 70 ADVDALARQVAARGGTVLSEPGATDDPGG-GYGFRFFDPDGRLIEFS 115 (120)
T ss_pred HHHHHHHHHHHHcCCceecCCcccCCCCC-ceEEEEECCCCCEEEEE
Confidence 456667777778888876442112 2222 33578899999877554
No 177
>PLN02380 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=34.49 E-value=98 Score=24.53 Aligned_cols=25 Identities=12% Similarity=-0.128 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhC--CCcEEEeccccc
Q 031422 27 ATAERLVRAAHGK--GANIILIQELFE 51 (160)
Q Consensus 27 ~~~~~~i~~a~~~--~~dlvv~PE~~~ 51 (160)
+.+.+.++...+. +-.+++|||..-
T Consensus 149 ~~l~~~~~~l~~~~~~~wllIFPEGTR 175 (376)
T PLN02380 149 NTLKSGFQRLKDFPRPFWLALFVEGTR 175 (376)
T ss_pred HHHHHHHHHHhhCCCccEEEEecCcCC
Confidence 4444455444432 456999999754
No 178
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=34.47 E-value=1.5e+02 Score=22.36 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHcCcEEEe
Q 031422 74 PTILKMQELAKELGVVMPV 92 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~ 92 (160)
+..+.+...++++++..+.
T Consensus 134 ee~~~~~~~~~~~gi~~I~ 152 (265)
T COG0159 134 EESDELLKAAEKHGIDPIF 152 (265)
T ss_pred HHHHHHHHHHHHcCCcEEE
Confidence 3445677777788776544
No 179
>PLN02510 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=34.31 E-value=82 Score=24.91 Aligned_cols=12 Identities=17% Similarity=0.005 Sum_probs=9.1
Q ss_pred CCcEEEeccccc
Q 031422 40 GANIILIQELFE 51 (160)
Q Consensus 40 ~~dlvv~PE~~~ 51 (160)
..-+++|||..-
T Consensus 172 ~~~LvIFPEGTR 183 (374)
T PLN02510 172 PLWLALFPEGTD 183 (374)
T ss_pred CcEEEEeCCcCC
Confidence 356999999754
No 180
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=34.25 E-value=1.7e+02 Score=22.45 Aligned_cols=74 Identities=12% Similarity=0.055 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccccC-CeeeEEE
Q 031422 28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEAN-NAHYNSI 106 (160)
Q Consensus 28 ~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~-~~~~Ns~ 106 (160)
+++..+..+-=..++++++=|-.+ |.. -.+. ....+.+++..++++..|+.......+ -.+.+..
T Consensus 162 RmraeLaaaLLh~p~VLfLDEpTv-gLD---------V~aq----~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv 227 (325)
T COG4586 162 RMRAELAAALLHPPKVLFLDEPTV-GLD---------VNAQ----ANIREFLKEYNEERQATVLLTTHIFDDIATLCDRV 227 (325)
T ss_pred HHHHHHHHHhcCCCcEEEecCCcc-Ccc---------hhHH----HHHHHHHHHHHHhhCceEEEEecchhhHHHhhhhe
Confidence 444444444446899999999766 221 1121 366777888888899998886444333 4667778
Q ss_pred EEEcCCCCEe
Q 031422 107 AIIDADGSDL 116 (160)
Q Consensus 107 ~~i~~~G~i~ 116 (160)
+.++ .|+++
T Consensus 228 ~~I~-~Gqlv 236 (325)
T COG4586 228 LLID-QGQLV 236 (325)
T ss_pred EEee-CCcEe
Confidence 8884 68765
No 181
>COG0204 PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
Probab=34.23 E-value=55 Score=23.45 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhCCCcEEEecccccc
Q 031422 27 ATAERLVRAAHGKGANIILIQELFEG 52 (160)
Q Consensus 27 ~~~~~~i~~a~~~~~dlvv~PE~~~~ 52 (160)
+.+.+.++.+.+.+-.+++|||..-+
T Consensus 125 ~~~~~~~~~~~~~g~~l~iFPEGtr~ 150 (255)
T COG0204 125 ETLRAAVARLKAGGRSLVIFPEGTRS 150 (255)
T ss_pred HHHHHHHHHHHhCCcEEEECCCcCcC
Confidence 45566666666668999999998664
No 182
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=33.44 E-value=1.4e+02 Score=22.33 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhCCCcEEE-eccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHc-CcEEEe
Q 031422 24 TNLATAERLVRAAHGKGANIIL-IQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL-GVVMPV 92 (160)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dlvv-~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-~i~i~~ 92 (160)
.+++...+..+.|.+.|+|-++ .|-.+.. . .+....+.+++++... ++.+++
T Consensus 80 ~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~-~----------------~~~~i~~~~~~v~~a~~~lpi~i 133 (288)
T cd00954 80 LNLKESQELAKHAEELGYDAISAITPFYYK-F----------------SFEEIKDYYREIIAAAASLPMII 133 (288)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCC-C----------------CHHHHHHHHHHHHHhcCCCCEEE
Confidence 4567778888888999999876 3544332 0 0135666677777666 666655
No 183
>KOG3406 consensus 40S ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
Probab=33.33 E-value=1.5e+02 Score=19.67 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=26.8
Q ss_pred CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 39 ~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
.++.|+|+-|.+- .+.+......++++++|.++-
T Consensus 49 rqA~lcvLaencd--------------------ep~yvKLVeALcaeh~iplik 82 (134)
T KOG3406|consen 49 RQAHLCVLAENCD--------------------EPMYVKLVEALCAEHQIPLIK 82 (134)
T ss_pred CceeEEEEeccCC--------------------chHHHHHHHHHHhhcCCCeEE
Confidence 4899999988432 247788888899999999875
No 184
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.82 E-value=31 Score=24.85 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=15.4
Q ss_pred HHHHHhCCCcEEEecccccc
Q 031422 33 VRAAHGKGANIILIQELFEG 52 (160)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~ 52 (160)
++...+.++|+|++.|+-..
T Consensus 20 ~~~l~~~~~DIv~LQE~~~~ 39 (255)
T TIGR00633 20 LDWLKEEQPDVLCLQETKVA 39 (255)
T ss_pred HHHHHhcCCCEEEEEeccCc
Confidence 45556679999999998653
No 185
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=32.65 E-value=1.8e+02 Score=22.31 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 031422 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (160)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g 93 (160)
.+...+...+.++..++.|..-|| |++..|+ ++-...|++++++.++.|+.+
T Consensus 33 ~~~~~~~~~~El~~~k~~Gg~tiV--d~T~~g~------------------GRd~~~l~~is~~tGv~II~~ 84 (308)
T PF02126_consen 33 RDEDVEAAVAELKEFKAAGGRTIV--DATPIGL------------------GRDVEALREISRRTGVNIIAS 84 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEE--E--SGGG------------------TB-HHHHHHHHHHHT-EEEEE
T ss_pred hhhhHHHHHHHHHHHHHcCCCEEE--ecCCccc------------------CcCHHHHHHHHHHhCCeEEEe
Confidence 345677788888888888888877 4444332 355678999999999999874
No 186
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=32.64 E-value=73 Score=25.31 Aligned_cols=41 Identities=7% Similarity=0.148 Sum_probs=27.1
Q ss_pred ccEEEEEeCCC--CCCHHHHHHHHHHHHHHHHhCCCcEEEecc
Q 031422 8 EVVVSALQFAC--TDDVSTNLATAERLVRAAHGKGANIILIQE 48 (160)
Q Consensus 8 ~~~va~~Q~~~--~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE 48 (160)
+.|+..+|=.. .+...-.+++|.+.++..++.++|++||=-
T Consensus 154 ~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVD 196 (403)
T PF06838_consen 154 NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVD 196 (403)
T ss_dssp TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE
T ss_pred CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEe
Confidence 46899999876 455666788888888888888899998854
No 187
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=32.53 E-value=76 Score=20.96 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEec
Q 031422 22 VSTNLATAERLVRAAHGKGANIILIQ 47 (160)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~P 47 (160)
+......+.+..++..+.++.+|-..
T Consensus 46 C~~~~~~l~~~~~~~~~~~v~vi~Is 71 (154)
T PRK09437 46 CTVQACGLRDNMDELKKAGVVVLGIS 71 (154)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 55566677777777777788877764
No 188
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=32.48 E-value=1.8e+02 Score=21.24 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHcCcEEE
Q 031422 75 TILKMQELAKELGVVMP 91 (160)
Q Consensus 75 ~~~~l~~~a~~~~i~i~ 91 (160)
....+.+.++++++..+
T Consensus 117 e~~~~~~~~~~~g~~~i 133 (242)
T cd04724 117 EAEEFREAAKEYGLDLI 133 (242)
T ss_pred HHHHHHHHHHHcCCcEE
Confidence 34456666777776443
No 189
>cd07983 LPLAT_DUF374-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.
Probab=32.37 E-value=1.3e+02 Score=20.61 Aligned_cols=40 Identities=18% Similarity=0.073 Sum_probs=26.0
Q ss_pred hCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccc
Q 031422 38 GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (160)
Q Consensus 38 ~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~ 95 (160)
++|--+++|||..-. . ...+..-...+|.+.++.|+--..
T Consensus 95 k~g~~v~ifpeG~r~--~----------------~~~~~~G~~~lA~~~~~pIvPv~i 134 (189)
T cd07983 95 KDGYNIAITPDGPRG--P----------------RYKVKPGVILLARKSGAPIVPVAI 134 (189)
T ss_pred hCCCEEEEcCCCCCC--c----------------ceecchHHHHHHHHhCCCEEEEEE
Confidence 458899999996421 0 013344567788888988875433
No 190
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=32.10 E-value=1.6e+02 Score=20.29 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 031422 21 DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (160)
Q Consensus 21 ~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~ 91 (160)
+.+...+.+.+.++.+.+.+++++++.-. ++. . +...+ ...+.+.++++|+++++.++
T Consensus 89 ~~~~~~~~l~~li~~~~~~~~~~ill~~~-~P~---~-~~~~~--------~~~~~~~~~~~a~~~~v~~i 146 (191)
T PRK10528 89 PPQQTEQTLRQIIQDVKAANAQPLLMQIR-LPA---N-YGRRY--------NEAFSAIYPKLAKEFDIPLL 146 (191)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEEee-cCC---c-ccHHH--------HHHHHHHHHHHHHHhCCCcc
Confidence 35555566666666666667888776310 111 0 00001 01344567888999887764
No 191
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=32.08 E-value=1e+02 Score=23.94 Aligned_cols=64 Identities=14% Similarity=0.250 Sum_probs=36.3
Q ss_pred hCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccccc-CCeeeEEEEEEcCCCCEe
Q 031422 38 GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 38 ~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i~~~G~i~ 116 (160)
..+++++++=|.+.. .++ . .....++.|+++.++.++.+++-..+.+ -.++.+..+++ .+|+++
T Consensus 156 ~~~P~iLLlDEPts~-LD~---------~----t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl-~~G~iv 220 (343)
T TIGR02314 156 ASNPKVLLCDEATSA-LDP---------A----TTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVI-SNGELI 220 (343)
T ss_pred HhCCCEEEEeCCccc-CCH---------H----HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 357888888885432 110 0 0135667778887777777766433322 13455666677 357664
No 192
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.95 E-value=95 Score=22.23 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=27.5
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE 97 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~ 97 (160)
..+.|.+.|++++|-|=+ ...+.+.++++++..+-|....
T Consensus 68 ~a~~ai~aGA~FivSP~~--------------------------~~~vi~~a~~~~i~~iPG~~Tp 107 (201)
T PRK06015 68 QFEDAAKAGSRFIVSPGT--------------------------TQELLAAANDSDVPLLPGAATP 107 (201)
T ss_pred HHHHHHHcCCCEEECCCC--------------------------CHHHHHHHHHcCCCEeCCCCCH
Confidence 445566667777777642 2447778888999998886654
No 193
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.56 E-value=1.5e+02 Score=20.75 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHcCcEEEeccccc-cCCeeeEEEEEEcCCCCEe
Q 031422 74 PTILKMQELAKELGVVMPVSFFEE-ANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~-~~~~~~Ns~~~i~~~G~i~ 116 (160)
.+.+.+.+++++.+..+++-.... .-..+.+..++++ +|++.
T Consensus 169 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~ 211 (214)
T cd03297 169 QLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVME-DGRLQ 211 (214)
T ss_pred HHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEE-CCEEE
Confidence 455667777766565554432222 1123455566673 57653
No 194
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=31.53 E-value=1.3e+02 Score=22.27 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEe-ccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 25 NLATAERLVRAAHGKGANIILI-QELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 25 n~~~~~~~i~~a~~~~~dlvv~-PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
+.+...++.+.|.+.|+|-|+. |=.+.. . .+....+.+++++...++.+++
T Consensus 77 ~~~~~i~~a~~a~~~Gad~v~v~pP~y~~----~-------------~~~~~~~~~~~ia~~~~~pi~i 128 (281)
T cd00408 77 STREAIELARHAEEAGADGVLVVPPYYNK----P-------------SQEGIVAHFKAVADASDLPVIL 128 (281)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCcCCC----C-------------CHHHHHHHHHHHHhcCCCCEEE
Confidence 4556778888888889996544 332221 0 0135666677777666676654
No 195
>PRK07695 transcriptional regulator TenI; Provisional
Probab=31.44 E-value=1.8e+02 Score=20.31 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=14.6
Q ss_pred HHHHHhCCCcEEEecccccc
Q 031422 33 VRAAHGKGANIILIQELFEG 52 (160)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~ 52 (160)
+.+|.+.|+|.|+++..+.+
T Consensus 108 a~~a~~~Gadyi~~g~v~~t 127 (201)
T PRK07695 108 AIQAEKNGADYVVYGHVFPT 127 (201)
T ss_pred HHHHHHcCCCEEEECCCCCC
Confidence 45566789999998876543
No 196
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=31.31 E-value=1e+02 Score=22.11 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=27.4
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE 97 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~ 97 (160)
..+.|.+.|++++|-|=+ ...+.+.++++++..+-|....
T Consensus 72 ~a~~a~~aGA~FivsP~~--------------------------~~~v~~~~~~~~i~~iPG~~Tp 111 (204)
T TIGR01182 72 QLRQAVDAGAQFIVSPGL--------------------------TPELAKHAQDHGIPIIPGVATP 111 (204)
T ss_pred HHHHHHHcCCCEEECCCC--------------------------CHHHHHHHHHcCCcEECCCCCH
Confidence 344566667777776642 1347778888999998886653
No 197
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=31.14 E-value=1.3e+02 Score=23.72 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=32.2
Q ss_pred HHHHHHHHHH-HhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe--ccc
Q 031422 27 ATAERLVRAA-HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV--SFF 95 (160)
Q Consensus 27 ~~~~~~i~~a-~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~--g~~ 95 (160)
+.+.+++.-. .=.++|||++.|.-+= . .+. .+..--.+.++|++++++++. |..
T Consensus 270 ~iV~~~~~le~~v~daDLVITGEGr~D---~-----------Qs~-~GK~pigVA~~Akk~~vPvIaiaGs~ 326 (378)
T COG1929 270 EIVLEATNLEDAVKDADLVITGEGRID---S-----------QSL-HGKTPIGVAKLAKKYGVPVIAIAGSL 326 (378)
T ss_pred HHHHHHhCHHHhhccCCEEEeCCCccc---c-----------ccc-CCccchHHHHhhhhhCCCEEEEeccc
Confidence 3444444422 2258999999996441 1 111 134445688999999988765 644
No 198
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=31.05 E-value=1.5e+02 Score=22.81 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcCcEEEe
Q 031422 76 ILKMQELAKELGVVMPV 92 (160)
Q Consensus 76 ~~~l~~~a~~~~i~i~~ 92 (160)
++.+.+++++++++++.
T Consensus 182 ~~~i~~l~~~~~~~li~ 198 (385)
T TIGR01825 182 LPEIVELAERYGAVTYV 198 (385)
T ss_pred HHHHHHHHHHhCCEEEE
Confidence 46789999999999876
No 199
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=31.00 E-value=1.6e+02 Score=19.52 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHHh--CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 031422 21 DVSTNLATAERLVRAAHG--KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (160)
Q Consensus 21 ~~~~n~~~~~~~i~~a~~--~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~ 91 (160)
+.+...+.+.++++.+.+ .++.+++..=.-..+.. .. .. .. ...+.+.+++++++.++.++
T Consensus 66 ~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~~~-~~----~~---~~--~~~~n~~l~~~a~~~~~~~i 128 (169)
T cd01828 66 SDEDIVANYRTILEKLRKHFPNIKIVVQSILPVGELK-SI----PN---EQ--IEELNRQLAQLAQQEGVTFL 128 (169)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCccC-cC----CH---HH--HHHHHHHHHHHHHHCCCEEE
Confidence 355555566666665555 68888886321111000 00 00 00 12566678888888888775
No 200
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=30.93 E-value=2.1e+02 Score=20.89 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecc
Q 031422 25 NLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (160)
Q Consensus 25 n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~ 94 (160)
....+.+.++.|.++++|+|-+.-.+..+.. . . .....++...+.|.+.++.++...
T Consensus 87 ~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~----------~-~--~~~~~l~~ai~~A~~~GilvvaaA 143 (247)
T cd07491 87 TPQSAAKAIEAAVEKKVDIISMSWTIKKPED----------N-D--NDINELENAIKEALDRGILLFCSA 143 (247)
T ss_pred CHHHHHHHHHHHHHCCCcEEEeeeecccccc----------c-c--cchHHHHHHHHHHHhCCeEEEEec
Confidence 4567889999999999999999853221100 0 0 012344444445666888887743
No 201
>COG5225 RRS1 Uncharacterized protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=30.87 E-value=1.7e+02 Score=19.74 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHH-HhCCCcEE--EeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCc
Q 031422 24 TNLATAERLVRAA-HGKGANII--LIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88 (160)
Q Consensus 24 ~n~~~~~~~i~~a-~~~~~dlv--v~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 88 (160)
.|.+.+...+-.. ++...|+| -+||..+. ++ .+.++.....-..+.++|+..||
T Consensus 46 dnVQ~l~nql~slp~~rtsd~VllqLPe~tt~-lP----------R~kplpk~k~eTkWerFAr~KGI 102 (172)
T COG5225 46 DNVQELKNQLCSLPARRTSDLVLLQLPESTTA-LP----------REKPLPKEKIETKWERFARTKGI 102 (172)
T ss_pred HHHHHHHHHHhcCchhcccceeEEeCCCcccc-Cc----------ccccccccchHHHHHHHHHhcCC
Confidence 4445554443332 45567766 57897653 33 22233334555677888888755
No 202
>TIGR03586 PseI pseudaminic acid synthase.
Probab=30.83 E-value=1.6e+02 Score=22.84 Aligned_cols=74 Identities=26% Similarity=0.280 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEeccc----cccc-----cc------cccchhhHhhhcccCCCChHHHHHHHHHHH
Q 031422 21 DVSTNLATAERLVRAAHGKGANIILIQEL----FEGY-----YF------CQAQREDFFQRAKPYKDHPTILKMQELAKE 85 (160)
Q Consensus 21 ~~~~n~~~~~~~i~~a~~~~~dlvv~PE~----~~~g-----~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 85 (160)
+-...++..++.++.|++.|+|.|=|.=. .... |. ......++++..+ ...+....|.+.+++
T Consensus 11 NH~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--l~~e~~~~L~~~~~~ 88 (327)
T TIGR03586 11 NHNGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAH--TPWEWHKELFERAKE 88 (327)
T ss_pred CCCChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhh--CCHHHHHHHHHHHHH
Confidence 45566788899999999999997655421 1100 00 0000111222111 134677788999999
Q ss_pred cCcEEEecccc
Q 031422 86 LGVVMPVSFFE 96 (160)
Q Consensus 86 ~~i~i~~g~~~ 96 (160)
.|+.++...+.
T Consensus 89 ~Gi~~~stpfd 99 (327)
T TIGR03586 89 LGLTIFSSPFD 99 (327)
T ss_pred hCCcEEEccCC
Confidence 99999876443
No 203
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=30.82 E-value=2.5e+02 Score=21.65 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHc
Q 031422 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (160)
Q Consensus 30 ~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 86 (160)
.++++...+.|+|++...+.+-.-.+ .+.+.++.. ++...+.+..++.
T Consensus 189 ~~~~~~~~eaGad~i~i~d~~~~~ls----p~~f~ef~~-----P~~k~i~~~i~~~ 236 (346)
T PRK00115 189 IAYLNAQIEAGAQAVQIFDSWAGALS----PADYREFVL-----PYMKRIVAELKRE 236 (346)
T ss_pred HHHHHHHHHcCCCEEEEecCccccCC----HHHHHHHHH-----HHHHHHHHHHHHh
Confidence 34444455679999988776332111 233445544 4445555555554
No 204
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=30.69 E-value=59 Score=21.60 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.1
Q ss_pred EEEEEcCCCCEeEEee
Q 031422 105 SIAIIDADGSDLGLYR 120 (160)
Q Consensus 105 s~~~i~~~G~i~~~y~ 120 (160)
+.++|+++|+++.+|.
T Consensus 125 ttflId~~G~i~~~~~ 140 (152)
T cd00340 125 TKFLVDRDGEVVKRFA 140 (152)
T ss_pred EEEEECCCCcEEEEEC
Confidence 6899999999876554
No 205
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=30.28 E-value=1.4e+02 Score=20.99 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=20.7
Q ss_pred HHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeE
Q 031422 80 QELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLG 117 (160)
Q Consensus 80 ~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~ 117 (160)
+++++.+++.. ...+..+-+.++|+++|.+..
T Consensus 110 ~~ia~~ygv~~------~~~g~~~r~~fiID~~G~i~~ 141 (199)
T PTZ00253 110 KSIARSYGVLE------EEQGVAYRGLFIIDPKGMLRQ 141 (199)
T ss_pred hHHHHHcCCcc------cCCCceEEEEEEECCCCEEEE
Confidence 45566665521 223445789999999998764
No 206
>PRK11756 exonuclease III; Provisional
Probab=30.21 E-value=61 Score=23.82 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeccccc
Q 031422 23 STNLATAERLVRAAHGKGANIILIQELFE 51 (160)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dlvv~PE~~~ 51 (160)
....+++.+.|+ +.++|+|+|.|...
T Consensus 12 ~~~~~~i~~~i~---~~~pDIi~LQE~~~ 37 (268)
T PRK11756 12 RARPHQLEAIIE---KHQPDVIGLQETKV 37 (268)
T ss_pred HHHHHHHHHHHH---hcCCCEEEEEeccc
Confidence 333444544444 55899999999743
No 207
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=30.06 E-value=1.6e+02 Score=20.22 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhCCCcE-EEeccccccccc
Q 031422 25 NLATAERLVRAAHGKGANI-ILIQELFEGYYF 55 (160)
Q Consensus 25 n~~~~~~~i~~a~~~~~dl-vv~PE~~~~g~~ 55 (160)
-.+.+.+.++.+.+...++ ||-.|.....-+
T Consensus 99 ~~~~i~~~l~~l~~~~~~lViVsnEVG~GiVP 130 (167)
T PF02283_consen 99 ILEEIERLLEALRERNADLVIVSNEVGWGIVP 130 (167)
T ss_dssp HHHHHHHHHHHHHH--SEEEEEEE---SS---
T ss_pred HHHHHHHHHHHHHccCCCEEEEEcCCCCCCCC
Confidence 3456666666665555555 777886554333
No 208
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=30.03 E-value=1.7e+02 Score=19.35 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCcEEEeccccc
Q 031422 29 AERLVRAAHGKGANIILIQELFE 51 (160)
Q Consensus 29 ~~~~i~~a~~~~~dlvv~PE~~~ 51 (160)
..++++.|.+.++|+|.+-=+..
T Consensus 39 ~e~~v~aa~~~~adiVglS~L~t 61 (128)
T cd02072 39 QEEFIDAAIETDADAILVSSLYG 61 (128)
T ss_pred HHHHHHHHHHcCCCEEEEecccc
Confidence 35677788888999999855443
No 209
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=29.93 E-value=2.3e+02 Score=21.01 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 031422 26 LATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (160)
Q Consensus 26 ~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~ 91 (160)
.+.++++.-++-++|.|++|.-=.++. +..+.+++.++++..+..+.
T Consensus 70 ~~Av~e~~~~~L~~g~d~iV~SVGALa-------------------d~~l~erl~~lak~~~~rv~ 116 (255)
T COG1712 70 PEAVREYVPKILKAGIDVIVMSVGALA-------------------DEGLRERLRELAKCGGARVY 116 (255)
T ss_pred HHHHHHHhHHHHhcCCCEEEEechhcc-------------------ChHHHHHHHHHHhcCCcEEE
Confidence 356677777788889999998665553 24777888888888765553
No 210
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=29.80 E-value=1.7e+02 Score=21.46 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=15.7
Q ss_pred HHHHHHHhCC-CcEEEeccccc
Q 031422 31 RLVRAAHGKG-ANIILIQELFE 51 (160)
Q Consensus 31 ~~i~~a~~~~-~dlvv~PE~~~ 51 (160)
+.++.|.+++ +|++..||..-
T Consensus 88 kv~R~Av~~~rVDil~~p~~~r 109 (229)
T COG1603 88 KVNRAAVENKRVDILSHPETGR 109 (229)
T ss_pred HHHHHHHhccCccEEEcccccC
Confidence 4566677765 99999999643
No 211
>PRK05273 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=29.79 E-value=73 Score=21.65 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=37.3
Q ss_pred HHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccc
Q 031422 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (160)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~ 95 (160)
..+.+.++++-|-+.+.|-...+-+.++...+.+.....+.+.+.+..++.+..+-.|.+
T Consensus 66 v~d~~geiL~VsQFTL~a~~~KG~rP~F~~a~~~~~A~~ly~~f~~~l~~~~~~V~~G~F 125 (147)
T PRK05273 66 VQDVGGEILVVSQFTLYADTRKGRRPSFSAAAPPEEAEPLYDYFVEALRAQGVPVETGRF 125 (147)
T ss_pred HHHCCCCEEEEEcccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHcCCceeeccc
Confidence 445588999999998877543334555555555433345666677777766554544533
No 212
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=29.53 E-value=2.4e+02 Score=21.03 Aligned_cols=54 Identities=24% Similarity=0.267 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 031422 26 LATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (160)
Q Consensus 26 ~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g 93 (160)
...+.+.++.|.++++|+|-+.=.+... + . ..++.+.+.+.+++++.++.++..
T Consensus 76 ~~~i~~ai~~a~~~g~~Vin~S~g~~~~-~-------~------~~~~~~~~ai~~a~~~~GvlvVaA 129 (275)
T cd05562 76 ELDFAAAIRALAAAGADIIVDDIGYLNE-P-------F------FQDGPIAQAVDEVVASPGVLYFSS 129 (275)
T ss_pred HHHHHHHHHHHHHcCCCEEEecccccCC-C-------c------ccCCHHHHHHHHHHHcCCcEEEEe
Confidence 4677888888889999999875332110 0 0 012345556666666568888774
No 213
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=29.34 E-value=1.4e+02 Score=22.29 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=23.4
Q ss_pred HHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 30 ~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
.++++.+++.|+|=++.|-+-. +..+.+.+.++++++.++.
T Consensus 105 e~F~~~~~~aGvdGlIipDLP~----------------------ee~~~~~~~~~~~gl~~I~ 145 (259)
T PF00290_consen 105 ERFFKEAKEAGVDGLIIPDLPP----------------------EESEELREAAKKHGLDLIP 145 (259)
T ss_dssp HHHHHHHHHHTEEEEEETTSBG----------------------GGHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHcCCCEEEEcCCCh----------------------HHHHHHHHHHHHcCCeEEE
Confidence 3455555555666666666421 3335677778888776543
No 214
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=29.30 E-value=74 Score=23.77 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEe
Q 031422 26 LATAERLVRAAHGKGANIILI 46 (160)
Q Consensus 26 ~~~~~~~i~~a~~~~~dlvv~ 46 (160)
.+.+.+.+++++++++|+||+
T Consensus 168 ~~~~~~~v~~lr~~~~D~II~ 188 (281)
T cd07409 168 IEAAQKEADKLKAQGVNKIIA 188 (281)
T ss_pred HHHHHHHHHHHHhcCCCEEEE
Confidence 456777777777779999764
No 215
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=29.26 E-value=1.6e+02 Score=21.92 Aligned_cols=56 Identities=9% Similarity=-0.041 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe-ccccccCCeeeE
Q 031422 26 LATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFFEEANNAHYN 104 (160)
Q Consensus 26 ~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~N 104 (160)
.+++.+..+...+.|+|.|++|-. + . +..++++++..+++++ |.=...+++...
T Consensus 157 a~~~i~ra~a~~~AGA~~i~lE~v--~---------------------~--~~~~~i~~~v~iP~igiGaG~~~dgqvlv 211 (254)
T cd06557 157 AERLLEDALALEEAGAFALVLECV--P---------------------A--ELAKEITEALSIPTIGIGAGPDCDGQVLV 211 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCC--C---------------------H--HHHHHHHHhCCCCEEEeccCCCCCceeeh
Confidence 566666666666789999988763 1 1 3467777788888876 655555555544
Q ss_pred EE
Q 031422 105 SI 106 (160)
Q Consensus 105 s~ 106 (160)
..
T Consensus 212 ~~ 213 (254)
T cd06557 212 WH 213 (254)
T ss_pred HH
Confidence 33
No 216
>PRK10342 glycerate kinase I; Provisional
Probab=29.21 E-value=1.1e+02 Score=24.40 Aligned_cols=44 Identities=7% Similarity=0.047 Sum_probs=29.6
Q ss_pred CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe--ccccc
Q 031422 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV--SFFEE 97 (160)
Q Consensus 39 ~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~--g~~~~ 97 (160)
+++|||+.-|..+= ..+. .+.....+.++++++++++++ |....
T Consensus 283 ~~ADLVITGEG~~D--------------~QTl-~GK~p~gVa~~A~~~~vPviai~G~~~~ 328 (381)
T PRK10342 283 HDCTLVITGEGRID--------------SQSI-HGKVPIGVANVAKKYHKPVIGIAGSLTD 328 (381)
T ss_pred ccCCEEEECCCcCc--------------cccc-CCccHHHHHHHHHHhCCCEEEEecccCC
Confidence 47999999997551 1111 256667788899999877654 76543
No 217
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=28.93 E-value=97 Score=23.25 Aligned_cols=53 Identities=11% Similarity=0.196 Sum_probs=34.5
Q ss_pred hhcccCCCChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEE-cCCCCEeEEeeec
Q 031422 65 QRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAII-DADGSDLGLYRKS 122 (160)
Q Consensus 65 ~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i-~~~G~i~~~y~K~ 122 (160)
..|.-.++...+..+-..+.+.++.+.++. ++.+.-++++ ||+|+.+..|...
T Consensus 74 H~AfLlP~r~~L~~~l~hl~~~~~~l~Ga~-----DH~vSEAlYl~DPEGNGIEiYaDr 127 (265)
T COG2514 74 HTAFLLPTREDLARVLNHLAEEGIPLVGAS-----DHLVSEALYLEDPEGNGIEIYADR 127 (265)
T ss_pred eeeeecCCHHHHHHHHHHHHhcCCcccccC-----cchhheeeeecCCCCCeEEEEecC
Confidence 334334445666667777788888887432 3355555444 8999999999875
No 218
>PRK09982 universal stress protein UspD; Provisional
Probab=28.75 E-value=63 Score=21.11 Aligned_cols=17 Identities=6% Similarity=0.264 Sum_probs=12.8
Q ss_pred HHHHHHhCCCcEEEecc
Q 031422 32 LVRAAHGKGANIILIQE 48 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE 48 (160)
.++.|.+.++||||.+-
T Consensus 95 I~~~A~~~~aDLIVmG~ 111 (142)
T PRK09982 95 LLEIMQKEQCDLLVCGH 111 (142)
T ss_pred HHHHHHHcCCCEEEEeC
Confidence 34456678999999984
No 219
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.70 E-value=1.5e+02 Score=22.19 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHcCcEEEecccc-ccCCeeeEEEEEEcCCCCEe
Q 031422 74 PTILKMQELAKELGVVMPVSFFE-EANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~-~~~~~~~Ns~~~i~~~G~i~ 116 (160)
.+.+.|.+++++.+..+++-... ..-.++.+..+++ .+|+++
T Consensus 183 ~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l-~~G~i~ 225 (290)
T PRK13634 183 EMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVM-HKGTVF 225 (290)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 55666777777767665553322 2222445666777 467664
No 220
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=28.58 E-value=1.2e+02 Score=22.74 Aligned_cols=16 Identities=13% Similarity=-0.031 Sum_probs=10.5
Q ss_pred CcccEEEEEeCCCCCC
Q 031422 6 RREVVVSALQFACTDD 21 (160)
Q Consensus 6 ~~~~~va~~Q~~~~~~ 21 (160)
++++||+++-...+.+
T Consensus 2 ~~~~~v~~~~g~~~~~ 17 (304)
T PRK01372 2 KMFGKVAVLMGGTSAE 17 (304)
T ss_pred CCCcEEEEEeCCCCCC
Confidence 3456899888666433
No 221
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=28.51 E-value=1.4e+02 Score=21.56 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=40.1
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcC
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDA 111 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~ 111 (160)
.|..|-...+++.+|-|-... . +|..-++.+..++++|.+-.+.+++...-.-.+..-|-.+++ .
T Consensus 162 aIARaLameP~vmLFDEPTSA-L-------------DPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fL-h 226 (256)
T COG4598 162 AIARALAMEPEVMLFDEPTSA-L-------------DPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFL-H 226 (256)
T ss_pred HHHHHHhcCCceEeecCCccc-C-------------CHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEe-e
Confidence 444455567888888884321 0 110124677889999999888887764433333344444444 4
Q ss_pred CCCE
Q 031422 112 DGSD 115 (160)
Q Consensus 112 ~G~i 115 (160)
+|.|
T Consensus 227 ~G~i 230 (256)
T COG4598 227 QGKI 230 (256)
T ss_pred ccee
Confidence 5643
No 222
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=28.12 E-value=2e+02 Score=20.24 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcCCCCE
Q 031422 74 PTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSD 115 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~~G~i 115 (160)
...+.|.+++++.+..+++ +.....-.. .+..+++. +|++
T Consensus 179 ~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~-~G~i 219 (221)
T TIGR02211 179 IIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMK-DGQL 219 (221)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEe-CCEe
Confidence 4556666666655555444 432222222 36667774 5654
No 223
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=28.09 E-value=1.5e+02 Score=23.55 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=30.1
Q ss_pred CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe--cccccc
Q 031422 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV--SFFEEA 98 (160)
Q Consensus 39 ~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~--g~~~~~ 98 (160)
+++|+|+.-|..+= ..+. .+.....+.++|+++++++++ |.....
T Consensus 282 ~~ADlVITGEG~~D--------------~Qtl-~GK~p~~Va~~A~~~~vPviai~G~v~~~ 328 (375)
T TIGR00045 282 KDADLVITGEGRLD--------------RQSL-MGKAPVGVAKRAKKYGVPVIAIAGSLGDG 328 (375)
T ss_pred cCCCEEEECCCccc--------------cccc-CCchHHHHHHHHHHhCCeEEEEecccCCC
Confidence 47999999996541 1111 256667788899999887644 766443
No 224
>KOG0898 consensus 40S ribosomal protein S15 [Translation, ribosomal structure and biogenesis]
Probab=27.99 E-value=54 Score=21.92 Aligned_cols=8 Identities=38% Similarity=0.933 Sum_probs=7.4
Q ss_pred cEEEeccc
Q 031422 42 NIILIQEL 49 (160)
Q Consensus 42 dlvv~PE~ 49 (160)
|+|++||+
T Consensus 89 ~mII~PEM 96 (152)
T KOG0898|consen 89 NMIIVPEM 96 (152)
T ss_pred cceeeHhh
Confidence 89999998
No 225
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=27.80 E-value=68 Score=21.29 Aligned_cols=29 Identities=14% Similarity=0.071 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEecc
Q 031422 20 DDVSTNLATAERLVRAAHGKGANIILIQE 48 (160)
Q Consensus 20 ~~~~~n~~~~~~~i~~a~~~~~dlvv~PE 48 (160)
......+..+.++.++..+.+..+|-++-
T Consensus 35 ~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 35 GFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 34677788888888888777888888774
No 226
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=27.78 E-value=2.7e+02 Score=21.12 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecc
Q 031422 22 VSTNLATAERLVRAAHGKGANIILIQE 48 (160)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE 48 (160)
.+.-.+...+.++...+.++|+++|-=
T Consensus 135 ~~~~~~~~~~q~~~l~~~gvD~i~~ET 161 (304)
T PRK09485 135 EEELQDFHRPRIEALAEAGADLLACET 161 (304)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEec
Confidence 444455555666666678999999854
No 227
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=27.60 E-value=75 Score=17.21 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=14.3
Q ss_pred EEEEEEcCCCCEeEEeeec
Q 031422 104 NSIAIIDADGSDLGLYRKS 122 (160)
Q Consensus 104 Ns~~~i~~~G~i~~~y~K~ 122 (160)
|.+++++++|+.+...++.
T Consensus 6 ~~aiVlT~dGeF~~ik~~~ 24 (56)
T PF12791_consen 6 KYAIVLTPDGEFIKIKRKP 24 (56)
T ss_pred CEEEEEcCCCcEEEEeCCC
Confidence 6788999999976555554
No 228
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=27.52 E-value=1.2e+02 Score=22.49 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeccccccccccc-cchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 031422 22 VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQ-AQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (160)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g 93 (160)
.+...+-+.+......+.++.|||.--.+.. |..+ ....+..+....+ ......|+.+|.++++++++.
T Consensus 115 ~~~l~~~L~~l~~~l~~~~ikLIVIDSIaal-fr~e~~~~~~~~~R~~~L--~~~~~~L~~lA~~~~iaVvvT 184 (256)
T PF08423_consen 115 LEELLELLEQLPKLLSESKIKLIVIDSIAAL-FRSEFSGRGDLAERQRML--ARLARILKRLARKYNIAVVVT 184 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSHH-HHHHSGSTTTHHHHHHHH--HHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHHHhhccccceEEEEecchHHH-HHHHHccchhhHHHHHHH--HHHHHHHHHHHHhCCceEEee
Confidence 3333333333333344568999998776442 2110 0011111111111 256667999999999998875
No 229
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=27.47 E-value=2.2e+02 Score=20.38 Aligned_cols=63 Identities=10% Similarity=0.107 Sum_probs=33.6
Q ss_pred CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccccc-CCeeeEEEEEEcCCCCEe
Q 031422 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 39 ~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i~~~G~i~ 116 (160)
.+++++++=|-+. |.. ..+ .....+.|.+++++.+..+++...... -..+.+..+++ .+|+++
T Consensus 131 ~~p~lllLDEPt~-gLD---------~~~----~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l-~~G~i~ 194 (230)
T TIGR01184 131 IRPKVLLLDEPFG-ALD---------ALT----RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVML-TNGPAA 194 (230)
T ss_pred cCCCEEEEcCCCc-CCC---------HHH----HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE-eCCcEe
Confidence 4788888888543 111 001 124556677777666665555333222 13345566777 367765
No 230
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=27.45 E-value=84 Score=23.13 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=43.7
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcC
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDA 111 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~ 111 (160)
.|..|-..++++++|=|-... ..+ ++ -++.++.+.++|++--+.+++..--.-....-+..++. .
T Consensus 146 AIARALaM~P~vmLFDEPTSA-LDP-----El--------v~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFm-d 210 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSA-LDP-----EL--------VGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFM-D 210 (240)
T ss_pred HHHHHHcCCCCEEeecCCccc-CCH-----HH--------HHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEe-e
Confidence 444555678999999995331 110 11 13566777888876544444453332233455556666 4
Q ss_pred CCCEeEEeeeccCC
Q 031422 112 DGSDLGLYRKSHIP 125 (160)
Q Consensus 112 ~G~i~~~y~K~~l~ 125 (160)
+|.++.......++
T Consensus 211 ~G~iie~g~p~~~f 224 (240)
T COG1126 211 QGKIIEEGPPEEFF 224 (240)
T ss_pred CCEEEEecCHHHHh
Confidence 68776555444433
No 231
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.38 E-value=1.3e+02 Score=21.95 Aligned_cols=21 Identities=5% Similarity=-0.097 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCcEEEeccccc
Q 031422 77 LKMQELAKELGVVMPVSFFEE 97 (160)
Q Consensus 77 ~~l~~~a~~~~i~i~~g~~~~ 97 (160)
..+.+.++++++.++-|....
T Consensus 102 ~~v~~~~~~~~i~~iPG~~Tp 122 (222)
T PRK07114 102 PDIAKVCNRRKVPYSPGCGSL 122 (222)
T ss_pred HHHHHHHHHcCCCEeCCCCCH
Confidence 457788888999998886653
No 232
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=27.31 E-value=1.9e+02 Score=20.81 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhC-CCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe-ccccccCCeee
Q 031422 26 LATAERLVRAAHGK-GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFFEEANNAHY 103 (160)
Q Consensus 26 ~~~~~~~i~~a~~~-~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~ 103 (160)
-..+.+.+...... ..|.|+.=|.-+- +.+.+..|.+++.+.|+.++. |.-..-.+..|
T Consensus 67 ~~~i~~~i~~~~~~~~~~~v~IDEaQF~-------------------~~~~v~~l~~lad~lgi~Vi~~GL~~DFrgepF 127 (201)
T COG1435 67 DTDIFDEIAALHEKPPVDCVLIDEAQFF-------------------DEELVYVLNELADRLGIPVICYGLDTDFRGEPF 127 (201)
T ss_pred hHHHHHHHHhcccCCCcCEEEEehhHhC-------------------CHHHHHHHHHHHhhcCCEEEEeccccccccCCC
Confidence 34555555554332 2689998886431 247778899999999999887 65543334333
No 233
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=27.20 E-value=1.5e+02 Score=17.95 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEe
Q 031422 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLY 119 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y 119 (160)
.-++.+.+.+.+.++.+..+. ...+.. .+..+.||+|..+..|
T Consensus 71 ~~~~~~~~~~~~~g~~v~~~~-~~~~~g--~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 71 AAVDALYAEWQAKGVKIIQEP-TEMDFG--YTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHHHCCCeEecCc-cccCCc--cEEEEECCCCCEEEee
Confidence 345666666777888876542 222222 1467889999887654
No 234
>COG2048 HdrB Heterodisulfide reductase, subunit B [Energy production and conversion]
Probab=27.02 E-value=1.2e+02 Score=23.26 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEecc
Q 031422 20 DDVSTNLATAERLVRAAHGKGANIILIQE 48 (160)
Q Consensus 20 ~~~~~n~~~~~~~i~~a~~~~~dlvv~PE 48 (160)
.+....++-....++.+.++++|.||.|=
T Consensus 202 ~~~~~sl~~~~~kL~~~ke~gad~ivt~C 230 (293)
T COG2048 202 LNLSVSLKLAKRKLQSAKEAGADCIVTPC 230 (293)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 45666777778888899999999999884
No 235
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=26.95 E-value=1.2e+02 Score=16.70 Aligned_cols=41 Identities=7% Similarity=-0.007 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcE
Q 031422 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89 (160)
Q Consensus 27 ~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ 89 (160)
+++.+.++.-.....+.+-||.|.. .....+-++|..+++.
T Consensus 2 ~~i~~~i~~F~~~~~~~~~fppm~~----------------------~~R~~vH~lA~~~~L~ 42 (58)
T cd02646 2 EDIKDEIEAFLLDSRDSLSFPPMDK----------------------HGRKTIHKLANCYNLK 42 (58)
T ss_pred hHHHHHHHHHHhCCCceEecCCCCH----------------------HHHHHHHHHHHHcCCc
Confidence 4555666655555678888888522 3445677788777654
No 236
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=26.87 E-value=2.1e+02 Score=19.70 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc
Q 031422 25 NLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE 97 (160)
Q Consensus 25 n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~ 97 (160)
-++.....++.|.+.++||+|+.-+-- .|.. ..-+...+.+ +-..+|+++++.+.+
T Consensus 78 ~La~A~~~l~~al~~~~DLlivNkFGk---------------~Ea~-G~Glr~~i~~-A~~~giPVLt~V~~~ 133 (159)
T PF10649_consen 78 ALAEASAALRRALAEGADLLIVNKFGK---------------QEAE-GRGLRDEIAA-ALAAGIPVLTAVPPR 133 (159)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcccHH---------------hhhc-CCCHHHHHHH-HHHCCCCEEEEECHH
Confidence 456667778888889999999987411 1111 1234444443 556788888886653
No 237
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=26.79 E-value=2e+02 Score=20.39 Aligned_cols=41 Identities=5% Similarity=0.098 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCC
Q 031422 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGS 114 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~ 114 (160)
...+.|.++.++.+..+++-....+.-...+..++++++++
T Consensus 175 ~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~ 215 (225)
T PRK10247 175 NVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAG 215 (225)
T ss_pred HHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccc
Confidence 44455666666656555443222211123566777755444
No 238
>PLN02361 alpha-amylase
Probab=26.66 E-value=3.4e+02 Score=21.77 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeccccc----cccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccc
Q 031422 24 TNLATAERLVRAAHGKGANIILIQELFE----GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95 (160)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dlvv~PE~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~ 95 (160)
.-++.+.+.+...++.|.+.|-+|=.+- .||... ++.+......+..-+..|.+.+.+.||.+++=.+
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~----d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V 97 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQ----NLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIV 97 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcc----cccccCcccCCHHHHHHHHHHHHHcCCEEEEEEc
Confidence 3568888888888899999998776543 344433 3333333333445677788888999999887444
No 239
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=26.63 E-value=1.8e+02 Score=18.53 Aligned_cols=21 Identities=24% Similarity=0.113 Sum_probs=15.2
Q ss_pred eeeEEEEEEcCCCCEeEEeee
Q 031422 101 AHYNSIAIIDADGSDLGLYRK 121 (160)
Q Consensus 101 ~~~Ns~~~i~~~G~i~~~y~K 121 (160)
...-+.++++++|.++..+.-
T Consensus 108 ~~~p~~~lid~~g~i~~~~~~ 128 (140)
T cd02971 108 LAARATFIIDPDGKIRYVEVE 128 (140)
T ss_pred ceeEEEEEECCCCcEEEEEec
Confidence 345578999999998755543
No 240
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=26.55 E-value=1.4e+02 Score=22.31 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=46.9
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccc-cCCeeeEEEEEEc
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANNAHYNSIAIID 110 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~-~~~~~~Ns~~~i~ 110 (160)
.|..|--+++++++-=|-..+- +|.......+.|++++++.|+.+++..... ...+|....+-+
T Consensus 157 aIARaL~Q~pkiILADEPvasL--------------Dp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl- 221 (258)
T COG3638 157 AIARALVQQPKIILADEPVASL--------------DPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGL- 221 (258)
T ss_pred HHHHHHhcCCCEEecCCccccc--------------ChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEe-
Confidence 3444555789999998854321 111224677889999999999999876543 234566666667
Q ss_pred CCCCEe
Q 031422 111 ADGSDL 116 (160)
Q Consensus 111 ~~G~i~ 116 (160)
.+|+++
T Consensus 222 ~~G~iv 227 (258)
T COG3638 222 KAGRIV 227 (258)
T ss_pred cCCcEE
Confidence 567764
No 241
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.44 E-value=1.3e+02 Score=21.66 Aligned_cols=21 Identities=0% Similarity=-0.062 Sum_probs=15.8
Q ss_pred HHHHHHHHHcCcEEEeccccc
Q 031422 77 LKMQELAKELGVVMPVSFFEE 97 (160)
Q Consensus 77 ~~l~~~a~~~~i~i~~g~~~~ 97 (160)
..+.+.++++++.++-|....
T Consensus 99 ~~v~~~~~~~~i~~iPG~~T~ 119 (213)
T PRK06552 99 RETAKICNLYQIPYLPGCMTV 119 (213)
T ss_pred HHHHHHHHHcCCCEECCcCCH
Confidence 457777888999988886643
No 242
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=26.31 E-value=1.7e+02 Score=19.70 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=33.8
Q ss_pred HHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcCCC
Q 031422 35 AAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADG 113 (160)
Q Consensus 35 ~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~~G 113 (160)
.|--.+++++++=|-+.. ... .. .....+.++++.++ +..+++ ......-....+..+++ .+|
T Consensus 95 ral~~~p~illlDEP~~~-LD~---------~~----~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~~~~l-~~g 158 (163)
T cd03216 95 RALARNARLLILDEPTAA-LTP---------AE----VERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVL-RDG 158 (163)
T ss_pred HHHhcCCCEEEEECCCcC-CCH---------HH----HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEE-ECC
Confidence 344468999999995442 110 00 12455566666544 554444 43222223345566666 357
Q ss_pred CEe
Q 031422 114 SDL 116 (160)
Q Consensus 114 ~i~ 116 (160)
++.
T Consensus 159 ~i~ 161 (163)
T cd03216 159 RVV 161 (163)
T ss_pred EEE
Confidence 654
No 243
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=26.25 E-value=1.6e+02 Score=21.64 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=30.1
Q ss_pred EEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCcEEEecccccc
Q 031422 10 VVSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEG 52 (160)
Q Consensus 10 ~va~~Q~~~~-~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~ 52 (160)
+|-.+.++.. ..-...++.+.+.++++.+.+.=+++.||..++
T Consensus 100 ~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 100 RIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred eeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 3444455442 222356788888999998899999999997664
No 244
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=26.09 E-value=93 Score=18.81 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHcCcEEEecc
Q 031422 74 PTILKMQELAKELGVVMPVSF 94 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~ 94 (160)
++++-+.+.++++++.++.|.
T Consensus 75 ~~~~Gi~~~~~~~g~~ivGG~ 95 (96)
T PF00586_consen 75 EIVKGIAEACREFGIPIVGGD 95 (96)
T ss_dssp HHHHHHHHHHHHHT-EEEEEE
T ss_pred HHHHHHHHHHHHhCCcEeCcC
Confidence 667788999999999999884
No 245
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=25.96 E-value=1.6e+02 Score=21.87 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEeccc
Q 031422 26 LATAERLVRAAHGKGANIILIQEL 49 (160)
Q Consensus 26 ~~~~~~~i~~a~~~~~dlvv~PE~ 49 (160)
.+.+.+.++...+.++|+|++.=-
T Consensus 66 ~~~l~~~v~~i~~~~pDlVli~GD 89 (271)
T PRK11340 66 LSLISDAIALGIEQKPDLILLGGD 89 (271)
T ss_pred HHHHHHHHHHHHhcCCCEEEEccC
Confidence 445666677777789999987543
No 246
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=25.94 E-value=2.3e+02 Score=19.73 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=25.5
Q ss_pred HHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecc
Q 031422 33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (160)
Q Consensus 33 i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~ 94 (160)
++++.+.|+|.|+++=.+. ......+.+.++++|+.+.++.
T Consensus 69 ~~~~~~~Gad~i~vh~~~~---------------------~~~~~~~i~~~~~~g~~~~~~~ 109 (206)
T TIGR03128 69 AEQAFAAGADIVTVLGVAD---------------------DATIKGAVKAAKKHGKEVQVDL 109 (206)
T ss_pred HHHHHHcCCCEEEEeccCC---------------------HHHHHHHHHHHHHcCCEEEEEe
Confidence 5556667777777663210 1234567777888888887653
No 247
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=25.91 E-value=1.5e+02 Score=25.34 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 031422 29 AERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (160)
Q Consensus 29 ~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~ 91 (160)
+.+.++ +.++|--+++|||...+... . . .++..-...+|.+.++.|+
T Consensus 87 ~~~~~~-~l~~g~~~~iFPEGtr~~~~--~-------~------~~~k~G~~~~a~~~~~piv 133 (718)
T PRK08043 87 IKHLVR-LVEQGRPVVIFPEGRITVTG--S-------L------MKIYDGAGFVAAKSGATVI 133 (718)
T ss_pred HHHHHH-HHhCCCEEEEeCCCccCCCC--C-------c------cCcchHHHHHHHHCCCCEE
Confidence 333333 44578899999998654211 0 0 1333445566777777764
No 248
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=25.74 E-value=1.5e+02 Score=17.56 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEE
Q 031422 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGL 118 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~ 118 (160)
.-++.+.+.+++.++.++.+......+ ..++.+.+|+|.++..
T Consensus 65 ~dv~~~~~~l~~~G~~~~~~~~~~~~g--~~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 65 EDVDALYERLKELGAEIVTEPRDDPWG--QRSFYFIDPDGNRIEF 107 (108)
T ss_dssp SHHHHHHHHHHHTTSEEEEEEEEETTS--EEEEEEE-TTS-EEEE
T ss_pred cCHHHHHHHHHHCCCeEeeCCEEcCCC--eEEEEEECCCCCEEEe
Confidence 445666677777888887643332222 2478899999987654
No 249
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.37 E-value=2.5e+02 Score=20.91 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=33.1
Q ss_pred CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEe
Q 031422 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 39 ~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~ 116 (160)
.+++++++=|-+.. .. ... .....+.|.+++++.+..+++-......-...+..+++ .+|++.
T Consensus 160 ~~P~llllDEPt~g-LD---------~~~----~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l-~~G~i~ 222 (282)
T PRK13640 160 VEPKIIILDESTSM-LD---------PAG----KEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVL-DDGKLL 222 (282)
T ss_pred cCCCEEEEECCccc-CC---------HHH----HHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE-ECCEEE
Confidence 46888888885441 11 111 12556677777766565555532222111245566666 467665
No 250
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.30 E-value=95 Score=24.11 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCCcEEEeccc
Q 031422 27 ATAERLVRAAHGKGANIILIQEL 49 (160)
Q Consensus 27 ~~~~~~i~~a~~~~~dlvv~PE~ 49 (160)
....+.++.|-++++|+|+..|+
T Consensus 185 ~sF~~aLraALReDPDVIlvGEm 207 (353)
T COG2805 185 LSFANALRAALREDPDVILVGEM 207 (353)
T ss_pred HHHHHHHHHHhhcCCCEEEEecc
Confidence 45667888888899999999997
No 251
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=25.21 E-value=1.2e+02 Score=17.94 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=21.2
Q ss_pred cEEEEEeCCC--CCCHHHHHHHHHHHHHHHHhCC
Q 031422 9 VVVSALQFAC--TDDVSTNLATAERLVRAAHGKG 40 (160)
Q Consensus 9 ~~va~~Q~~~--~~~~~~n~~~~~~~i~~a~~~~ 40 (160)
+||++.+.+- .-+.+...+.+.+.+..|...+
T Consensus 3 IkIGi~~~~REl~ies~~s~dev~~~v~~Al~~~ 36 (74)
T PF11305_consen 3 IKIGIQNVARELVIESDQSADEVEAAVTDALADG 36 (74)
T ss_pred EEEeeecCCceEEEecCCCHHHHHHHHHHHHhCC
Confidence 7888887765 2334455667777777776655
No 252
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.87 E-value=2.5e+02 Score=19.61 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHcCcEEEeccccc-cCCeeeEEEEEEcCCCCEe
Q 031422 74 PTILKMQELAKELGVVMPVSFFEE-ANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~-~~~~~~Ns~~~i~~~G~i~ 116 (160)
.+.+.|++++++.+..+++..... .-..+.+..+++. +|++.
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~-~G~i~ 208 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLD-NGRIA 208 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEE-CCEEe
Confidence 455667777666566655532222 2223456666773 57653
No 253
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=24.76 E-value=1.8e+02 Score=21.20 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCcEEEeccccc
Q 031422 30 ERLVRAAHGKGANIILIQELFE 51 (160)
Q Consensus 30 ~~~i~~a~~~~~dlvv~PE~~~ 51 (160)
.+.+++|.+.++|+|+.=+-.+
T Consensus 43 ~~vi~~A~~~~~dlIItHHP~~ 64 (241)
T PF01784_consen 43 PEVIEEAIEKGADLIITHHPLF 64 (241)
T ss_dssp HHHHHHHHHTT-SEEEESS-SS
T ss_pred HHHHHHHHHcCCCEEEEcCchh
Confidence 4677888889999999999644
No 254
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=24.66 E-value=1.3e+02 Score=23.33 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=34.8
Q ss_pred CCcccEEEEEeCCC--CCCHHHHHHHHHHHHHHHHhCCCcEEEecccc
Q 031422 5 KRREVVVSALQFAC--TDDVSTNLATAERLVRAAHGKGANIILIQELF 50 (160)
Q Consensus 5 ~~~~~~va~~Q~~~--~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~ 50 (160)
+....|+-.+|-.. .+.+.-.+++|.+.++..++.++.+|||=.-+
T Consensus 162 i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNC 209 (416)
T COG4100 162 ISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNC 209 (416)
T ss_pred cCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 44567888888776 34566667888888888888899999997643
No 255
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=24.58 E-value=65 Score=22.32 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=13.2
Q ss_pred HHHHHHHhCCCcEEEeccccc
Q 031422 31 RLVRAAHGKGANIILIQELFE 51 (160)
Q Consensus 31 ~~i~~a~~~~~dlvv~PE~~~ 51 (160)
++.+...+.++|+|+|.|...
T Consensus 20 ~i~~~i~~~~~Dii~LQEv~~ 40 (249)
T PF03372_consen 20 EIAQWIAELDPDIIALQEVRN 40 (249)
T ss_dssp HHHHHHHHHT-SEEEEEEEES
T ss_pred HHHHHHHhcCCCEEEEecchh
Confidence 334444445699999999754
No 256
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=24.51 E-value=2.5e+02 Score=19.78 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcCCCCEe
Q 031422 74 PTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~~G~i~ 116 (160)
.+.+.|++++++.+..+++ +.....-..+.+..+++ .+|++.
T Consensus 183 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l-~~G~i~ 225 (228)
T cd03257 183 QILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVM-YAGKIV 225 (228)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE-eCCEEE
Confidence 4556677777664555544 43222212345666677 357653
No 257
>PRK09932 glycerate kinase II; Provisional
Probab=24.46 E-value=2.3e+02 Score=22.57 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=29.3
Q ss_pred CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe--ccccc
Q 031422 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV--SFFEE 97 (160)
Q Consensus 39 ~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~--g~~~~ 97 (160)
+++|+|+.-|..+ .. .+ ..+.....+.++++++++++++ |....
T Consensus 283 ~~ADlVITGEG~~---D~-----------Qt-~~GK~p~~Va~~A~~~~~Pvi~i~G~~~~ 328 (381)
T PRK09932 283 QGAALVITGEGRI---DS-----------QT-AGGKAPLGVASVAKQFNVPVIGIAGVLGD 328 (381)
T ss_pred ccCCEEEECCCcc---cc-----------cc-cCCccHHHHHHHHHHcCCCEEEEecccCC
Confidence 4799999999654 10 11 1245567788899999877654 76543
No 258
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=24.41 E-value=1.3e+02 Score=20.98 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEec
Q 031422 22 VSTNLATAERLVRAAHGKGANIILIQ 47 (160)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~P 47 (160)
.+...+.+.++++.+.+.++|+||+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~d~i~~~ 48 (223)
T cd00840 23 REDQFEAFEEIVELAIEEKVDFVLIA 48 (223)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEC
Confidence 34556777778888888899987763
No 259
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=24.34 E-value=1.8e+02 Score=17.76 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeE
Q 031422 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLG 117 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~ 117 (160)
.-++.+.+.+++.++.+... +...+...|. +++.||+|..+.
T Consensus 82 ~~v~~~~~~l~~~g~~~~~~-~~~~~~g~~~-~~~~DPdG~~iE 123 (125)
T cd07241 82 EAVDELTERLRADGYLIIGE-PRTTGDGYYE-SVILDPEGNRIE 123 (125)
T ss_pred HHHHHHHHHHHHCCCEEEeC-ceecCCCeEE-EEEECCCCCEEE
Confidence 45677777778888877642 2222333454 457799998764
No 260
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=24.30 E-value=48 Score=27.40 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=28.2
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecc
Q 031422 14 LQFACTDDVSTNLATAERLVRAAHGKGANIILIQE 48 (160)
Q Consensus 14 ~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE 48 (160)
.|++...|.+..-..+.+-++.+.+.|+|+|..|+
T Consensus 58 ~QF~~~eD~~~YPr~~~~D~~~l~~~gvd~vf~P~ 92 (512)
T PRK13477 58 LQFGPNEDLERYPRTLEADRELCESAGVDAIFAPS 92 (512)
T ss_pred ccCCCchhhhhCCCCHHHHHHHHHhcCCCEEECCC
Confidence 57777677777777778888888888999999995
No 261
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=24.26 E-value=3.3e+02 Score=20.84 Aligned_cols=48 Identities=21% Similarity=0.174 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHc
Q 031422 30 ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL 86 (160)
Q Consensus 30 ~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 86 (160)
.++++...+.|+|++...+.+- ++.. .+.+.++.. ++..++.+..++.
T Consensus 183 ~~~~~~~~eaGad~i~i~d~~~-~~ls---p~~f~ef~~-----p~~k~i~~~i~~~ 230 (338)
T TIGR01464 183 IEYLVEQVKAGAQAVQIFDSWA-GALS---PEDFEEFVL-----PYLKKIIEEVKAR 230 (338)
T ss_pred HHHHHHHHHcCCCEEEEECCcc-ccCC---HHHHHHHHH-----HHHHHHHHHHHHh
Confidence 3444445567999988777532 2211 223445544 4445555555444
No 262
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function.
Probab=24.21 E-value=86 Score=20.02 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=15.1
Q ss_pred HHHHHHHhCCCcEEEeccc
Q 031422 31 RLVRAAHGKGANIILIQEL 49 (160)
Q Consensus 31 ~~i~~a~~~~~dlvv~PE~ 49 (160)
+..+.|-+.|..++||||.
T Consensus 10 e~~KlA~K~gk~livlpdl 28 (106)
T PF09895_consen 10 EAFKLALKLGKSLIVLPDL 28 (106)
T ss_pred HHHHHHHHcCCcEEEeCCH
Confidence 4556677789999999994
No 263
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=24.09 E-value=1.2e+02 Score=23.36 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHcCcEEEeccccccCCeeeEE
Q 031422 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNS 105 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns 105 (160)
+.++.+++-+++.++.|++|..+ ++-.||.
T Consensus 111 ei~eglr~~a~kfgvpivGGhth--pd~~y~v 140 (324)
T COG2144 111 EILEGLRKGARKFGVPIVGGHTH--PDTPYCV 140 (324)
T ss_pred HHHHHHHHHHHhcCCceecCccC--CCCCCce
Confidence 56778899999999999999544 3444553
No 264
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=23.90 E-value=3.7e+02 Score=21.30 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcE-EEeccccccccccc-cchhhHhhhcccCCCChHHHHHHHHHHHc--CcEEEe
Q 031422 23 STNLATAERLVRAAHGKGANI-ILIQELFEGYYFCQ-AQREDFFQRAKPYKDHPTILKMQELAKEL--GVVMPV 92 (160)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dl-vv~PE~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~a~~~--~i~i~~ 92 (160)
+..++.+++.++.|++-|++. ++||=..-..+... +....+... .+.+..+.+.+++. ++.+.+
T Consensus 111 ~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~------~e~L~~lae~A~~~G~GV~laL 178 (382)
T TIGR02631 111 RYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRM------REALNLLAAYAEDQGYGLRFAL 178 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHH------HHHHHHHHHHHHhhCCCcEEEE
Confidence 456778888999999999985 55553211111111 001111111 24556667777775 577766
No 265
>PRK14072 6-phosphofructokinase; Provisional
Probab=23.84 E-value=1.7e+02 Score=23.49 Aligned_cols=12 Identities=17% Similarity=0.265 Sum_probs=10.2
Q ss_pred CCCcEEEecccc
Q 031422 39 KGANIILIQELF 50 (160)
Q Consensus 39 ~~~dlvv~PE~~ 50 (160)
.++|+++.||.-
T Consensus 208 ~gad~iliPE~~ 219 (416)
T PRK14072 208 DAPHLIYLPERP 219 (416)
T ss_pred CCccEEEccCCC
Confidence 579999999963
No 266
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=23.79 E-value=47 Score=24.50 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=15.8
Q ss_pred HHHHHHhCCCcEEEecccccc
Q 031422 32 LVRAAHGKGANIILIQELFEG 52 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~ 52 (160)
+..-..+.++|+|++.|+=+.
T Consensus 19 ~~~~l~~~~~DIiclQEtK~~ 39 (250)
T PRK13911 19 FMDFFNSVDADVFCIQESKMQ 39 (250)
T ss_pred HHHHHHhcCCCEEEEEeeccc
Confidence 444555779999999998654
No 267
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.72 E-value=2.6e+02 Score=19.84 Aligned_cols=42 Identities=14% Similarity=0.336 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHcCcEEEecccccc-CCeeeEEEEEEcCCCCEe
Q 031422 74 PTILKMQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~-~~~~~Ns~~~i~~~G~i~ 116 (160)
.+.+.+.+++++.+..+++.....+ -.++.+..+++ .+|++.
T Consensus 178 ~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~~G~i~ 220 (233)
T cd03258 178 SILALLRDINRELGLTIVLITHEMEVVKRICDRVAVM-EKGEVV 220 (233)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 4556677766665655555333222 13455666777 467764
No 268
>PRK09894 diguanylate cyclase; Provisional
Probab=23.56 E-value=3e+02 Score=20.15 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=27.2
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 031422 9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIIL 45 (160)
Q Consensus 9 ~~va~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv 45 (160)
+.+|++..+...+.+.-+++....+..|++.|..-++
T Consensus 249 ~siGv~~~~~~~~~~~ll~~A~~Al~~ak~~g~~~~~ 285 (296)
T PRK09894 249 ATFGVSRAFPEETLDVVIGRADRAMYEGKQTGRNRVM 285 (296)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 4567777665557888888889999999887765444
No 269
>PRK10785 maltodextrin glucosidase; Provisional
Probab=23.51 E-value=3.4e+02 Score=22.91 Aligned_cols=64 Identities=11% Similarity=0.247 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhCCCcEEEecccc----ccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 25 NLATAERLVRAAHGKGANIILIQELF----EGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 25 n~~~~~~~i~~a~~~~~dlvv~PE~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
.++-+.+.+...++-|++.|-+.=.+ ..||... ++........+.+-++.|.+.|.+.||.|++
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~----Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVil 244 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTE----DYRHVDPQLGGDAALLRLRHATQQRGMRLVL 244 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcc----cccccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 45666666777778899998654332 2334432 3444444444456788899999999999988
No 270
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=23.45 E-value=3.1e+02 Score=20.28 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 031422 26 LATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (160)
Q Consensus 26 ~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g 93 (160)
...+.+.++.|.++++|+|=+.-.... .. . .....+....+.+.+.++.++..
T Consensus 92 ~~~i~~ai~~a~~~g~~VIN~S~G~~~----~~--------~---~~~~~l~~a~~~a~~~gvlvv~A 144 (267)
T cd07476 92 QLDLARAINLALEQGAHIINISGGRLT----QT--------G---EADPILANAVAMCQQNNVLIVAA 144 (267)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCCcCC----CC--------C---CCCHHHHHHHHHHHHCCCEEEEe
Confidence 356677888888899999987643211 00 0 01345555566677889998874
No 271
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=23.37 E-value=87 Score=20.25 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=11.6
Q ss_pred HHHHHHhCCCcEEEecc
Q 031422 32 LVRAAHGKGANIILIQE 48 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE 48 (160)
+++.|.+.++||||..=
T Consensus 95 I~~~a~~~~~DLIV~Gs 111 (144)
T PRK15118 95 LVDAIKKYDMDLVVCGH 111 (144)
T ss_pred HHHHHHHhCCCEEEEeC
Confidence 34446667889988865
No 272
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=23.30 E-value=3.7e+02 Score=21.12 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhCCCcE-EEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 031422 24 TNLATAERLVRAAHGKGANI-ILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (160)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dl-vv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~ 91 (160)
.++.-..+.++.|.++|+-+ ++||..+-+ |. +..+...- ...+...+..++++.++..+
T Consensus 249 ~q~~F~e~~L~~ake~~I~~vl~~P~V~~~-~~------~~~~~~~~--~~~w~~~i~~l~~~~~~~~~ 308 (345)
T PF07611_consen 249 TQFFFLEKFLKLAKENGIPVVLWWPKVSPP-YE------KLYKELKV--YESWWPIIKKLAKEYGIPFL 308 (345)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEEEeccCHH-HH------HHHHhhch--hhHHHHHHHHHHhcCCceEe
Confidence 44566677888888888766 678886553 21 22222221 24677788888888887753
No 273
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.23 E-value=2.8e+02 Score=19.73 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHcCcEEEeccccc-cCCeeeEEEEEEcCCCCEe
Q 031422 74 PTILKMQELAKELGVVMPVSFFEE-ANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~-~~~~~~Ns~~~i~~~G~i~ 116 (160)
...+.|++++++.+..+++..... .-..+.+..+++. +|+++
T Consensus 182 ~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~-~G~i~ 224 (241)
T cd03256 182 QVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLK-DGRIV 224 (241)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEEE
Confidence 455667777766565555533322 2233556677774 67764
No 274
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=23.20 E-value=3e+02 Score=20.36 Aligned_cols=42 Identities=17% Similarity=0.307 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEe
Q 031422 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~ 116 (160)
.+.+.|++++++.+..+++-....+.-...+..++++ +|+++
T Consensus 182 ~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~-~G~i~ 223 (280)
T PRK13633 182 EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMD-SGKVV 223 (280)
T ss_pred HHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEE-CCEEE
Confidence 4556677776665666555322221111255666663 57654
No 275
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=23.19 E-value=1.8e+02 Score=22.70 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccc
Q 031422 27 ATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (160)
Q Consensus 27 ~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~ 96 (160)
+++.+-++..++.|.++|-+.|.+=. ..+-.+-.-+-..++.+.+.++++|+.++++.+.
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~----------~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~ 69 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWS----------WLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPT 69 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHH----------HH-SBTTB---HHHHHHHHHHHCTT-EEEEEECT
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechh----------hccCCCCeeecHHHHHHHHHHHhccCeEEEEecc
Confidence 34555566666669999988775211 0111111113466788888899999999887653
No 276
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=23.15 E-value=3.1e+02 Score=22.34 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=10.0
Q ss_pred CCcEEEeccccc
Q 031422 40 GANIILIQELFE 51 (160)
Q Consensus 40 ~~dlvv~PE~~~ 51 (160)
++|+++.||..+
T Consensus 272 ~ad~ilIPE~~f 283 (443)
T PRK06830 272 DVNFVLIPEVPF 283 (443)
T ss_pred CCCEEEecCCCC
Confidence 699999999644
No 277
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=23.15 E-value=81 Score=22.92 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=14.7
Q ss_pred HHHHHHhCCCcEEEeccccc
Q 031422 32 LVRAAHGKGANIILIQELFE 51 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~ 51 (160)
.++.....++|+|++.|.-.
T Consensus 18 ~~~~l~~~~~DIi~LQE~~~ 37 (254)
T TIGR00195 18 GLAWLKENQPDVLCLQETKV 37 (254)
T ss_pred HHHHHHhcCCCEEEEEeccc
Confidence 34445566899999999744
No 278
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=23.11 E-value=82 Score=22.80 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=27.9
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccc
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE 96 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~ 96 (160)
..++|.+.|++++|-|=. . ..+.+.+.++++.++-|...
T Consensus 77 q~~~a~~aGa~fiVsP~~-----~---------------------~ev~~~a~~~~ip~~PG~~T 115 (211)
T COG0800 77 QARQAIAAGAQFIVSPGL-----N---------------------PEVAKAANRYGIPYIPGVAT 115 (211)
T ss_pred HHHHHHHcCCCEEECCCC-----C---------------------HHHHHHHHhCCCcccCCCCC
Confidence 556677789999988752 1 34677778888888877554
No 279
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=23.04 E-value=2.9e+02 Score=19.73 Aligned_cols=63 Identities=11% Similarity=0.185 Sum_probs=32.0
Q ss_pred CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEe
Q 031422 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 39 ~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~ 116 (160)
.+++++++=|-+.. .. ... ...+.+.|.+++++.+..+++.....+.-...+..+++ .+|+++
T Consensus 149 ~~p~llllDEP~~~-LD---------~~~----~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l-~~G~i~ 211 (236)
T TIGR03864 149 HRPALLLLDEPTVG-LD---------PAS----RAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVL-HRGRVL 211 (236)
T ss_pred cCCCEEEEcCCccC-CC---------HHH----HHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEE-eCCeEE
Confidence 46788888775431 11 000 12455667777655555554433322211225666777 468764
No 280
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=22.97 E-value=1.8e+02 Score=23.55 Aligned_cols=53 Identities=15% Similarity=0.072 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 26 LATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 26 ~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
++.+++++++..+.=|=+||=|=....|.. . +...+++.|+++++++++.+|+
T Consensus 187 ~~al~~~~~~~g~~IAaVIvEPv~gn~g~i------------~--p~~~Fl~~Lr~lt~e~G~lLI~ 239 (432)
T COG0001 187 LEALEEAFEEYGDDIAAVIVEPVAGNMGVV------------P--PEPGFLEGLRELTEEHGALLIF 239 (432)
T ss_pred HHHHHHHHHHcCCcEEEEEeccccCCCCCC------------C--CCHHHHHHHHHHHHHcCcEEEE
Confidence 455555555443333455666665555542 1 2368999999999999999875
No 281
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=22.95 E-value=64 Score=24.39 Aligned_cols=84 Identities=17% Similarity=0.268 Sum_probs=50.7
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEec---ccccccccccc-------------------c------hhhHh
Q 031422 13 ALQFACTDDVSTNLATAERLVRAAHGKGANIILIQ---ELFEGYYFCQA-------------------Q------REDFF 64 (160)
Q Consensus 13 ~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~P---E~~~~g~~~~~-------------------~------~~~~~ 64 (160)
-.|+.+..|.+..-..+.+-+..+.+.|+|++..| |++..|..... + ..+++
T Consensus 59 P~QFg~~EDl~~YPR~l~~D~~~le~~gvd~vF~P~~~emYP~g~~~~~~~~v~~ls~~LeGa~RPGHF~GV~TVV~KLF 138 (285)
T COG0414 59 PLQFGPNEDLDRYPRTLERDLELLEKEGVDIVFAPTVEEMYPHGIERVTVVPVPGLSDELEGASRPGHFRGVATVVTKLF 138 (285)
T ss_pred hhhcCCchhhhhCCCCHHHHHHHHHhcCCcEEeCCChhhcCCCCCcceeeecCCCccccccCCCCCCccceeeeHHHhhh
Confidence 34555556676666677777777878899999999 44444432000 0 22444
Q ss_pred hhcccCC------CChHHHHHHHHHHHcCcEEEe-cccc
Q 031422 65 QRAKPYK------DHPTILKMQELAKELGVVMPV-SFFE 96 (160)
Q Consensus 65 ~~~~~~~------~~~~~~~l~~~a~~~~i~i~~-g~~~ 96 (160)
+...|.. +..-+..++++.++.++.+=+ |.+.
T Consensus 139 niv~Pd~AyFGeKD~QQl~vIr~mV~DL~~~VeIv~vpt 177 (285)
T COG0414 139 NIVQPDRAYFGEKDYQQLAVIRRMVADLNLPVEIVGVPT 177 (285)
T ss_pred cccCCCeeeeccchHHHHHHHHHHHHHcCCCeEEEecce
Confidence 4444311 133455678888999888743 7663
No 282
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=22.90 E-value=3.7e+02 Score=20.94 Aligned_cols=65 Identities=14% Similarity=0.153 Sum_probs=34.7
Q ss_pred HhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcCCCCE
Q 031422 37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSD 115 (160)
Q Consensus 37 ~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~~G~i 115 (160)
--.+++++++=|-+.. .. ... .....+.|+++.++.++.+++ +.-..+-..+.+..++++ +|++
T Consensus 151 L~~~P~llLLDEP~s~-LD---------~~~----r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~-~G~i 215 (353)
T PRK10851 151 LAVEPQILLLDEPFGA-LD---------AQV----RKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMS-QGNI 215 (353)
T ss_pred HhcCCCEEEEeCCCcc-CC---------HHH----HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 3357888888885431 11 000 125567777877776766555 332222233445556663 5665
Q ss_pred e
Q 031422 116 L 116 (160)
Q Consensus 116 ~ 116 (160)
.
T Consensus 216 ~ 216 (353)
T PRK10851 216 E 216 (353)
T ss_pred E
Confidence 4
No 283
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=22.88 E-value=2.7e+02 Score=19.66 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=32.1
Q ss_pred HhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcCCCC
Q 031422 37 HGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGS 114 (160)
Q Consensus 37 ~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~~G~ 114 (160)
--.+++++++=|-+.. .. ... .....+.|.++.++.+..+++ +..... -.+.+..+++. +|+
T Consensus 156 l~~~p~illlDEP~~~-LD---------~~~----~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~-~g~ 218 (220)
T TIGR02982 156 LVHRPKLVLADEPTAA-LD---------SKS----GRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHME-DGK 218 (220)
T ss_pred HhcCCCEEEEeCCCCc-CC---------HHH----HHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEE-CCE
Confidence 3346888888885442 11 000 124556677776655555544 433222 23556667773 454
No 284
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=22.81 E-value=1.2e+02 Score=22.22 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEecc
Q 031422 26 LATAERLVRAAHGKGANIILIQE 48 (160)
Q Consensus 26 ~~~~~~~i~~a~~~~~dlvv~PE 48 (160)
.+++.+..++.+++|+|+||+==
T Consensus 164 ~~~l~~Aa~~L~~~gadlIvLDC 186 (221)
T PF07302_consen 164 EEELAAAARELAEQGADLIVLDC 186 (221)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEC
Confidence 46777788888889999999865
No 285
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=22.79 E-value=2.8e+02 Score=21.44 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCcEEEe
Q 031422 76 ILKMQELAKELGVVMPV 92 (160)
Q Consensus 76 ~~~l~~~a~~~~i~i~~ 92 (160)
++.+.++++++++++++
T Consensus 189 l~~i~~la~~~~~~li~ 205 (393)
T TIGR01822 189 LDEICDLADKYDALVMV 205 (393)
T ss_pred HHHHHHHHHHcCCEEEE
Confidence 57789999999999876
No 286
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=22.77 E-value=2.8e+02 Score=19.58 Aligned_cols=41 Identities=10% Similarity=0.046 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcCCCCEe
Q 031422 74 PTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~~G~i~ 116 (160)
.+.+.|++++++.+..+++ ......-. ..+..+++ .+|++.
T Consensus 184 ~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l-~~g~i~ 225 (228)
T PRK10584 184 KIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRL-VNGQLQ 225 (228)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEE-ECCEEE
Confidence 4556667776665655544 32221112 24555666 357653
No 287
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=22.76 E-value=2.9e+02 Score=20.69 Aligned_cols=59 Identities=8% Similarity=0.018 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe-ccccccCCeeeE
Q 031422 26 LATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFFEEANNAHYN 104 (160)
Q Consensus 26 ~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~N 104 (160)
.+++.+..+...+.|+|.|+++-. + . +..+.++++..+++++ |.=...+++...
T Consensus 160 a~~~i~ra~a~~eAGA~~i~lE~v--~---------------------~--~~~~~i~~~l~iP~igiGaG~~~dgqvlv 214 (264)
T PRK00311 160 AEKLLEDAKALEEAGAFALVLECV--P---------------------A--ELAKEITEALSIPTIGIGAGPDCDGQVLV 214 (264)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCC--C---------------------H--HHHHHHHHhCCCCEEEeccCCCCCceeee
Confidence 456666666666789999988763 1 1 3456677777888765 655555565544
Q ss_pred EEEEE
Q 031422 105 SIAII 109 (160)
Q Consensus 105 s~~~i 109 (160)
..=++
T Consensus 215 ~~D~l 219 (264)
T PRK00311 215 WHDML 219 (264)
T ss_pred HHhhc
Confidence 43333
No 288
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=22.69 E-value=1.2e+02 Score=18.86 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhCCCcEEEeccc
Q 031422 27 ATAERLVRAAHGKGANIILIQEL 49 (160)
Q Consensus 27 ~~~~~~i~~a~~~~~dlvv~PE~ 49 (160)
.++.++.+.+...++|+|||=.-
T Consensus 44 GK~eei~~~~~~~~~d~vvfd~~ 66 (95)
T PF13167_consen 44 GKVEEIKELIEELDADLVVFDNE 66 (95)
T ss_pred hHHHHHHHHHhhcCCCEEEECCC
Confidence 34444444455679999999874
No 289
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.66 E-value=2.4e+02 Score=18.57 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCCcEEEeccc
Q 031422 30 ERLVRAAHGKGANIILIQEL 49 (160)
Q Consensus 30 ~~~i~~a~~~~~dlvv~PE~ 49 (160)
.+.++.|.+.++|+|++.=+
T Consensus 43 e~~v~aa~e~~adii~iSsl 62 (132)
T TIGR00640 43 EEIARQAVEADVHVVGVSSL 62 (132)
T ss_pred HHHHHHHHHcCCCEEEEcCc
Confidence 46777788889999998543
No 290
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=22.61 E-value=2.8e+02 Score=19.42 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcCCCC
Q 031422 74 PTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGS 114 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~~G~ 114 (160)
.+.+.|.+++++.+..+++ +.....-. +.+..+++. +|+
T Consensus 178 ~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~-~G~ 217 (218)
T cd03255 178 EVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELR-DGK 217 (218)
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEee-CCc
Confidence 4556677776644555544 43322222 556666663 453
No 291
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=22.55 E-value=3.6e+02 Score=20.62 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=15.8
Q ss_pred HHHHHHHHHhCCCcEEEeccccc
Q 031422 29 AERLVRAAHGKGANIILIQELFE 51 (160)
Q Consensus 29 ~~~~i~~a~~~~~dlvv~PE~~~ 51 (160)
+.++++...+.|+|+|.+-+.+.
T Consensus 182 ~~~~~~~~~~~Gad~I~i~dp~a 204 (340)
T TIGR01463 182 VIAYAKAMVEAGADVIAIADPFA 204 (340)
T ss_pred HHHHHHHHHHcCCCEEEecCCcc
Confidence 34444445677999999988654
No 292
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=22.37 E-value=2.7e+02 Score=20.94 Aligned_cols=53 Identities=21% Similarity=0.155 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 031422 24 TNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 92 (160)
.+++...+..+.|.+.|+|-|+..= +.|... ......+.+++++...++++++
T Consensus 83 ~~t~~ai~~a~~a~~~Gad~v~v~~---P~y~~~-------------~~~~l~~~f~~va~a~~lPv~i 135 (293)
T PRK04147 83 VNTAEAQELAKYATELGYDAISAVT---PFYYPF-------------SFEEICDYYREIIDSADNPMIV 135 (293)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC---CcCCCC-------------CHHHHHHHHHHHHHhCCCCEEE
Confidence 3466777788888888998765432 112110 0125556666666666666554
No 293
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=22.34 E-value=2.2e+02 Score=18.01 Aligned_cols=79 Identities=14% Similarity=0.192 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecccc-c--
Q 031422 21 DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-E-- 97 (160)
Q Consensus 21 ~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~-~-- 97 (160)
.+...+..+.++.++.++.+..+|...- ..+.. ....+.+++.++++++..-+-.-. .
T Consensus 37 ~C~~~~p~l~~l~~~~~~~~~~vi~i~~---~~~~~----------------~~~~~~~~~~~~~~~~~~p~~~D~~~~~ 97 (126)
T cd03012 37 NCLHTLPYLTDLEQKYKDDGLVVIGVHS---PEFAF----------------ERDLANVKSAVLRYGITYPVANDNDYAT 97 (126)
T ss_pred cHHHHHHHHHHHHHHcCcCCeEEEEecc---Ccccc----------------ccCHHHHHHHHHHcCCCCCEEECCchHH
Confidence 4566677777777766655666654421 00000 122345666666665543211100 0
Q ss_pred ---cCCeeeEEEEEEcCCCCEeEE
Q 031422 98 ---ANNAHYNSIAIIDADGSDLGL 118 (160)
Q Consensus 98 ---~~~~~~Ns~~~i~~~G~i~~~ 118 (160)
.+-.-+-+.++|+++|+++..
T Consensus 98 ~~~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 98 WRAYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred HHHhCCCcCCeEEEECCCCcEEEE
Confidence 111234567999999987643
No 294
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=22.26 E-value=2.5e+02 Score=21.76 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHcCcEEEe
Q 031422 74 PTILKMQELAKELGVVMPV 92 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~ 92 (160)
+.++.+.++++++++++++
T Consensus 176 ~~l~~i~~la~~~g~~liv 194 (398)
T cd00613 176 DLIKEIADIAHSAGALVYV 194 (398)
T ss_pred chHHHHHHHHHhcCCEEEE
Confidence 4568899999999999987
No 295
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=22.19 E-value=3.9e+02 Score=21.88 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=38.4
Q ss_pred HHHHHHhCCCcEEEeccc-cccccccccchh-hHh-hhcccCCCChHHHHHHHHHHHcCcEEE
Q 031422 32 LVRAAHGKGANIILIQEL-FEGYYFCQAQRE-DFF-QRAKPYKDHPTILKMQELAKELGVVMP 91 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~-~~~g~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~a~~~~i~i~ 91 (160)
.+.+|.+.|++++++=|- +-+.|-.-+.+. .+. ...+|+ .++++.++.+-+++++..+
T Consensus 332 nI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPI--TPfidrvr~l~~~~GvStI 392 (448)
T PF09818_consen 332 NIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPI--TPFIDRVRSLYEKLGVSTI 392 (448)
T ss_pred HHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCc--chHHHHHHHHHHHcCceEE
Confidence 445666889999999997 334443323222 222 345655 4899999999999987654
No 296
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=22.18 E-value=1.6e+02 Score=21.93 Aligned_cols=22 Identities=5% Similarity=-0.008 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCcEEEecccc
Q 031422 75 TILKMQELAKELGVVMPVSFFE 96 (160)
Q Consensus 75 ~~~~l~~~a~~~~i~i~~g~~~ 96 (160)
.++...+.+++.++.|++|...
T Consensus 194 ~~~~a~~~~~~aDlllviGTSl 215 (260)
T cd01409 194 RVVTAAARLAEADALLVLGSSL 215 (260)
T ss_pred HHHHHHHHHhcCCEEEEeCcCc
Confidence 4455566667788999998653
No 297
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=22.12 E-value=54 Score=25.94 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=26.2
Q ss_pred CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe--ccccccCCeee
Q 031422 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV--SFFEEANNAHY 103 (160)
Q Consensus 39 ~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~--g~~~~~~~~~~ 103 (160)
.++|+|+.-|..+ . ..+. .+.....+.++|+++++++++ |........++
T Consensus 283 ~~aDlVITGEG~~---D-----------~Qtl-~GK~p~~Va~~A~~~~vPviav~G~~~~~~~~l~ 334 (377)
T PF02595_consen 283 EDADLVITGEGRL---D-----------AQTL-AGKVPGGVARLAKKHGVPVIAVAGSVDLDAEELY 334 (377)
T ss_dssp CC-SEEEE--CEC---S-----------TTTT-TTCHHHHHHCCHCCTT--EEEEECEC-TT---SS
T ss_pred cCCCEEEECcccc---c-----------cccC-CCcHHHHHHHHHHHcCCcEEEEeCCCCCChHHHh
Confidence 4799999999654 1 1111 256667788899999888754 76554333333
No 298
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=22.04 E-value=2.1e+02 Score=17.67 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEee
Q 031422 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~ 120 (160)
.-++.+.+..++.++.+..+ +.......-.++++.+|+|..+..|.
T Consensus 73 ~dv~~~~~~l~~~G~~~~~~-~~~~~~~~~~~~~~~DPdG~~iE~~~ 118 (122)
T cd07265 73 ADLEKLEARLQAYGVAVERI-PAGELPGVGRRVRFQLPSGHTMELYA 118 (122)
T ss_pred HHHHHHHHHHHHCCCcEEEc-ccCCCCCCceEEEEECCCCCEEEEEE
Confidence 35666777777888876532 22211122236788899999876553
No 299
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=21.99 E-value=3.7e+02 Score=20.60 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCCcE-EEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 031422 27 ATAERLVRAAHGKGANI-ILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (160)
Q Consensus 27 ~~~~~~i~~a~~~~~dl-vv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g 93 (160)
+.+.+.++++.+.|+.. |++.+ ||. + ....+.+.+.++++++-+++.
T Consensus 80 ~~v~~al~e~~~~Gvk~~vIisa----Gf~------------e----~g~~~~~~~~ar~~girviGP 127 (300)
T PLN00125 80 PFAAAAILEAMEAELDLVVCITE----GIP------------Q----HDMVRVKAALNRQSKTRLIGP 127 (300)
T ss_pred HHHHHHHHHHHHcCCCEEEEECC----CCC------------c----ccHHHHHHHHHhhcCCEEECC
Confidence 56778888888888884 56666 332 1 013455667789999999874
No 300
>PLN02489 homocysteine S-methyltransferase
Probab=21.96 E-value=3.8e+02 Score=20.76 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecc
Q 031422 22 VSTNLATAERLVRAAHGKGANIILIQE 48 (160)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE 48 (160)
.+.-.+.....++...+.++|+|+|-=
T Consensus 162 ~~e~~~~~~~qi~~l~~~gvD~i~~ET 188 (335)
T PLN02489 162 LEKLKDFHRRRLQVLAEAGPDLIAFET 188 (335)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 344555556666666678999999854
No 301
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.92 E-value=2.9e+02 Score=20.52 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=33.6
Q ss_pred CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEe
Q 031422 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 39 ~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~ 116 (160)
.+++++++=|-+.. .. ... ...+.+.+.+++++.+..+++-......-...+..+++ .+|++.
T Consensus 157 ~~p~lLlLDEPt~~-LD---------~~~----~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l-~~G~i~ 219 (279)
T PRK13650 157 MRPKIIILDEATSM-LD---------PEG----RLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVM-KNGQVE 219 (279)
T ss_pred cCCCEEEEECCccc-CC---------HHH----HHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE-ECCEEE
Confidence 46788888885431 11 011 12556677777776566655533222111245666777 467764
No 302
>cd00563 Dtyr_deacylase D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but not in archea; beta barrel-like fold structure; forms homodimers in which two surface cavities serve as the active site for tRNA binding
Probab=21.85 E-value=1.1e+02 Score=20.73 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=35.9
Q ss_pred HHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 031422 36 AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (160)
Q Consensus 36 a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g 93 (160)
..+.+.++++-|-+.+.|-....-+.++...+.+....++.+.+.+..++....+-.|
T Consensus 66 v~d~~gevL~VsQFTL~~~~~KG~rP~F~~a~~~e~A~~ly~~fv~~l~~~~~~V~~G 123 (145)
T cd00563 66 VKDVNGEILVVSQFTLYADTKKGRRPSFSAAAPPDKAEPLYESFVELLREKGIKVETG 123 (145)
T ss_pred hhhcCCCEEEEEccccccccCCCCCCCccccCCHHHHHHHHHHHHHHHHHcCCcceeC
Confidence 3445789999999999775534445556655555433456666666676654444334
No 303
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=21.72 E-value=2.7e+02 Score=19.47 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=30.1
Q ss_pred CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcCCCCEe
Q 031422 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 39 ~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~~G~i~ 116 (160)
.+++++++=|-+.. .. ... ...+.+.|.++.++ +..+++ +.....-..+.+..+++ .+|++.
T Consensus 153 ~~p~illlDEPt~~-LD---------~~~----~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l-~~G~i~ 215 (218)
T cd03266 153 HDPPVLLLDEPTTG-LD---------VMA----TRALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVL-HRGRVV 215 (218)
T ss_pred cCCCEEEEcCCCcC-CC---------HHH----HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhcCEEEEE-ECCEEe
Confidence 47888888885431 11 000 12455566666543 444444 43322212344555666 457653
No 304
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=21.69 E-value=1.8e+02 Score=21.30 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEec
Q 031422 21 DVSTNLATAERLVRAAHGKGANIILIQ 47 (160)
Q Consensus 21 ~~~~n~~~~~~~i~~a~~~~~dlvv~P 47 (160)
|+-.....+.+++..+++.++|++|.-
T Consensus 11 DlHg~~~~~~k~~~~~~~~~~D~lvia 37 (226)
T COG2129 11 DLHGSEDSLKKLLNAAADIRADLLVIA 37 (226)
T ss_pred ccccchHHHHHHHHHHhhccCCEEEEe
Confidence 566667788888888888899997753
No 305
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=21.54 E-value=1.3e+02 Score=22.64 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEe
Q 031422 24 TNLATAERLVRAAHGKGANIILI 46 (160)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dlvv~ 46 (160)
.-.+.+.+.+++++++++|+||.
T Consensus 175 d~~e~~~~~v~~lr~~~~D~IIv 197 (288)
T cd07412 175 DEVEAINAVAPELKAGGVDAIVV 197 (288)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEE
Confidence 34567777777787789999774
No 306
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=21.50 E-value=74 Score=23.56 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEecc
Q 031422 21 DVSTNLATAERLVRAAHGKGANIILIQE 48 (160)
Q Consensus 21 ~~~~n~~~~~~~i~~a~~~~~dlvv~PE 48 (160)
+...-.+.+.++...+.+.++|+|||==
T Consensus 13 ~~~g~~e~l~~l~~~~~e~~~D~~v~~G 40 (255)
T PF14582_consen 13 NFRGDFELLERLVEVIPEKGPDAVVFVG 40 (255)
T ss_dssp --TT-HHHHHHHHHHHHHHT-SEEEEES
T ss_pred CcchHHHHHHHHHhhccccCCCEEEEec
Confidence 4555667777778878788999988743
No 307
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.47 E-value=3e+02 Score=19.35 Aligned_cols=42 Identities=19% Similarity=0.361 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcCCCCEe
Q 031422 74 PTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~~G~i~ 116 (160)
...+.|.+++++.+..+++ +.....-..+.+..+++ .+|++.
T Consensus 169 ~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l-~~G~i~ 211 (220)
T cd03265 169 HVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAII-DHGRII 211 (220)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE-eCCEEE
Confidence 4556667776665655544 43222223345666777 468764
No 308
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=21.43 E-value=4.9e+02 Score=21.79 Aligned_cols=67 Identities=12% Similarity=0.182 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEecccccc-----ccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEecc
Q 031422 24 TNLATAERLVRAAHGKGANIILIQELFEG-----YYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF 94 (160)
Q Consensus 24 ~n~~~~~~~i~~a~~~~~dlvv~PE~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~ 94 (160)
..++.+.+.+...++.|++.|.++=.+.+ ||.. .++...........-+..|.+.+.+.||.|++=.
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~----~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDV----ANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCc----ccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45566666677777889999976544432 3432 2334444433344667788888899999998743
No 309
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=21.20 E-value=2e+02 Score=21.90 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEecccc
Q 031422 20 DDVSTNLATAERLVRAAHGKGANIILIQELF 50 (160)
Q Consensus 20 ~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~ 50 (160)
...+..++++.+...+|.+.|+.+||+---.
T Consensus 135 ~~L~~aL~~l~~ea~~Av~~G~~ilILsDr~ 165 (287)
T PF04898_consen 135 EGLEEALDRLCEEAEAAVREGANILILSDRN 165 (287)
T ss_dssp TCHHHHHHHHHHHHHHHHHCT-SEEEEESTC
T ss_pred hHHHHHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 4688889999999999999999999996643
No 310
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=21.18 E-value=1.2e+02 Score=23.62 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCCcEEEeccccccc
Q 031422 27 ATAERLVRAAHGKGANIILIQELFEGY 53 (160)
Q Consensus 27 ~~~~~~i~~a~~~~~dlvv~PE~~~~g 53 (160)
+++.++++.+.+.|+++++||...-+|
T Consensus 308 ~~~~~l~~~v~~~gg~V~i~Ss~~e~G 334 (351)
T TIGR00111 308 EEIEKLLDSVESMGGKVVILSTEHELG 334 (351)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCccH
Confidence 568889999999999999999987765
No 311
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=21.12 E-value=49 Score=27.19 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=30.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeccc
Q 031422 12 SALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL 49 (160)
Q Consensus 12 a~~Q~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~ 49 (160)
-++|+.++.|+++.+.++-+..++-++..+=|++.|+-
T Consensus 401 ~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 401 WVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred EEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhH
Confidence 47899999999999999999888555556777787863
No 312
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.05 E-value=3.4e+02 Score=20.16 Aligned_cols=62 Identities=13% Similarity=0.221 Sum_probs=32.7
Q ss_pred CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcCCCCEe
Q 031422 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 39 ~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~~G~i~ 116 (160)
.+++++++=|-+.. .. ... ...+.+.|++++++.+..+++ +.....-. ..+..+++ .+|.+.
T Consensus 157 ~~p~lllLDEPt~g-LD---------~~~----~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l-~~G~i~ 219 (279)
T PRK13635 157 LQPDIIILDEATSM-LD---------PRG----RREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVM-NKGEIL 219 (279)
T ss_pred cCCCEEEEeCCccc-CC---------HHH----HHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEE-ECCEEE
Confidence 46888888885431 11 000 125566677777766665555 32222112 25566666 357654
No 313
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=21.03 E-value=1.8e+02 Score=21.90 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=12.0
Q ss_pred HhCCCcEEEeccccc
Q 031422 37 HGKGANIILIQELFE 51 (160)
Q Consensus 37 ~~~~~dlvv~PE~~~ 51 (160)
...++|+|+|.|.+-
T Consensus 33 ~~~~~DVV~LQEv~~ 47 (283)
T TIGR03395 33 YIKNQDVVILNEAFD 47 (283)
T ss_pred cccCCCEEEEecccc
Confidence 345899999999854
No 314
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=20.99 E-value=4.5e+02 Score=21.17 Aligned_cols=78 Identities=14% Similarity=-0.022 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccccCCee
Q 031422 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAH 102 (160)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~ 102 (160)
..-.++..++.....+...++.|++|.-+.-. .+.+.. . .+....+...+.........+....
T Consensus 105 ~s~~~~~~Elv~~ll~~~~~i~V~v~~~~~~~---------~~f~~~----~---~~e~~~~~~~i~y~~~e~~~d~~~~ 168 (409)
T KOG2178|consen 105 ESVLEKFVELVEWLLQTFPNITVYVEDKVAKD---------KQFSAG----N---LDESFGVKERILYWTTEGCDDLPNR 168 (409)
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEechhhhhh---------hhhccc----c---hhhcccchhceEeeccccccccccc
Confidence 34556777777777777889999999755311 111110 1 1113333334444443333455678
Q ss_pred eEEEEEEcCCCCEe
Q 031422 103 YNSIAIIDADGSDL 116 (160)
Q Consensus 103 ~Ns~~~i~~~G~i~ 116 (160)
+.-++.++.+|.++
T Consensus 169 ~D~iItLGGDGTvL 182 (409)
T KOG2178|consen 169 FDLIITLGGDGTVL 182 (409)
T ss_pred eeEEEEecCCccEE
Confidence 88899998889876
No 315
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=20.99 E-value=2.1e+02 Score=21.12 Aligned_cols=33 Identities=6% Similarity=-0.004 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHHH-hCCCcEEEecccccc
Q 031422 20 DDVSTNLATAERLVRAAH-GKGANIILIQELFEG 52 (160)
Q Consensus 20 ~~~~~n~~~~~~~i~~a~-~~~~dlvv~PE~~~~ 52 (160)
.+.++-.+.+.+.++... +.|+|++|.|=-+.+
T Consensus 40 ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA~ 73 (251)
T TIGR00067 40 KSPEFILEYVLELLTFLKERHNIKLLVVACNTAS 73 (251)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchHH
Confidence 457778888888888888 889999999865444
No 316
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=20.93 E-value=3.3e+02 Score=19.67 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEecccccccccccc-chhhHhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 031422 23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQA-QREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS 93 (160)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g 93 (160)
+.+++.+++.++.|.+.|++.|+.......+..... ....+.. ....+..+.++|++.++.+..-
T Consensus 80 ~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~------~~~~l~~l~~~a~~~~i~l~~e 145 (274)
T COG1082 80 EEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARER------WAEALEELAEIAEELGIGLALE 145 (274)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHH------HHHHHHHHHHHHHHhCCceEEe
Confidence 456788888888899999998887776554332110 0000100 1256677788888887776554
No 317
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=20.91 E-value=2.3e+02 Score=22.60 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=17.3
Q ss_pred ChHHHHHHHHHHHcCcEEEe
Q 031422 73 HPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 73 ~~~~~~l~~~a~~~~i~i~~ 92 (160)
..+++.|+++++++++.+++
T Consensus 217 ~~~l~~l~~l~~~~~~llI~ 236 (426)
T PRK00062 217 PGFLEGLRELCDEHGALLIF 236 (426)
T ss_pred HHHHHHHHHHHHHcCCEEEE
Confidence 47889999999999998864
No 318
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=20.90 E-value=2e+02 Score=19.95 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcCCCCE
Q 031422 74 PTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSD 115 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~~G~i 115 (160)
.+.+.|++++++ +..+++ +.....-..+.+..+++. +|++
T Consensus 164 ~l~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~-~G~i 204 (205)
T cd03226 164 RVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLA-NGAI 204 (205)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEE-CCEE
Confidence 444556665543 544444 432222123445556663 4653
No 319
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=20.87 E-value=1.2e+02 Score=18.06 Aligned_cols=18 Identities=22% Similarity=0.157 Sum_probs=13.2
Q ss_pred eeEEEEEEcCCCCEeEEe
Q 031422 102 HYNSIAIIDADGSDLGLY 119 (160)
Q Consensus 102 ~~Ns~~~i~~~G~i~~~y 119 (160)
-+-+.++++++|+++..|
T Consensus 97 ~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 97 GLPTTFLIDRDGRIRARH 114 (116)
T ss_pred ccceEEEECCCCcEEEEe
Confidence 345678999999887554
No 320
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=20.84 E-value=3.4e+02 Score=19.78 Aligned_cols=24 Identities=4% Similarity=0.160 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEe
Q 031422 23 STNLATAERLVRAAHGKGANIILI 46 (160)
Q Consensus 23 ~~n~~~~~~~i~~a~~~~~dlvv~ 46 (160)
+..++.+++.++.|+.-|++.|++
T Consensus 80 ~~~~~~l~~~i~~A~~lGa~~vv~ 103 (273)
T smart00518 80 EKSIERLIDEIKRCEELGIKALVF 103 (273)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEE
Confidence 455778889999999999998886
No 321
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=20.84 E-value=3.6e+02 Score=20.05 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEecccc
Q 031422 20 DDVSTNLATAERLVRAAHGKGANIILIQELF 50 (160)
Q Consensus 20 ~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~ 50 (160)
.+.+++++.+.+.++.|++.|..+.+-+|.+
T Consensus 112 ~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 112 TTLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 3467788899999999999999888878855
No 322
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=20.72 E-value=1.4e+02 Score=24.63 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=44.9
Q ss_pred CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEE
Q 031422 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGL 118 (160)
Q Consensus 39 ~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~ 118 (160)
.++++++|=|-.-.-.+ .+ -.++++.+++++++-...|.++.-..+--.+-..+-++ ..|+++++
T Consensus 157 r~a~iLILDEPTaVLTP-----------~E---~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVL-R~Gkvvgt 221 (501)
T COG3845 157 RGARLLILDEPTAVLTP-----------QE---ADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVL-RRGKVVGT 221 (501)
T ss_pred cCCCEEEEcCCcccCCH-----------HH---HHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEE-eCCeEEee
Confidence 58999999995321111 11 13677788888877777777674443334566667777 67988888
Q ss_pred eee
Q 031422 119 YRK 121 (160)
Q Consensus 119 y~K 121 (160)
++.
T Consensus 222 ~~~ 224 (501)
T COG3845 222 VDP 224 (501)
T ss_pred ecC
Confidence 884
No 323
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=20.66 E-value=3.2e+02 Score=19.85 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHcCcEEEeccccc-cCCeeeEEEEEEcCCCCEe
Q 031422 74 PTILKMQELAKELGVVMPVSFFEE-ANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~-~~~~~~Ns~~~i~~~G~i~ 116 (160)
...+.+++++++.+..+++-.... .-..+.+..+++ .+|++.
T Consensus 189 ~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l-~~g~i~ 231 (258)
T PRK11701 189 RLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVM-KQGRVV 231 (258)
T ss_pred HHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE-ECCEEE
Confidence 445556666666566655533322 223455667777 467764
No 324
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=20.64 E-value=2.4e+02 Score=22.24 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=17.3
Q ss_pred ChHHHHHHHHHHHcCcEEEe
Q 031422 73 HPTILKMQELAKELGVVMPV 92 (160)
Q Consensus 73 ~~~~~~l~~~a~~~~i~i~~ 92 (160)
..+++.|+++++++++.++.
T Consensus 215 ~~~l~~l~~l~~~~~~llI~ 234 (423)
T TIGR00713 215 PEFLAGLRALTEEYGSLLIF 234 (423)
T ss_pred HHHHHHHHHHHHHhCCEEEE
Confidence 37889999999999998865
No 325
>PLN02412 probable glutathione peroxidase
Probab=20.60 E-value=1.1e+02 Score=20.81 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEecc
Q 031422 22 VSTNLATAERLVRAAHGKGANIILIQE 48 (160)
Q Consensus 22 ~~~n~~~~~~~i~~a~~~~~dlvv~PE 48 (160)
.......+.++.++-.+.|..+|-++-
T Consensus 44 c~~e~~~l~~l~~~~~~~g~~vvgv~~ 70 (167)
T PLN02412 44 TDSNYKELNVLYEKYKEQGFEILAFPC 70 (167)
T ss_pred hHHHHHHHHHHHHHHhhCCcEEEEecc
Confidence 444566777777777777888887764
No 326
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=20.55 E-value=2.6e+02 Score=18.23 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEee
Q 031422 76 ILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120 (160)
Q Consensus 76 ~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y~ 120 (160)
++.+.+.+.+.++.++.. +...++.....+++.+|+|.++..+.
T Consensus 97 ld~~~~~l~~~G~~~~~~-~~~~~~~~~~~~~~~DPdG~~iel~~ 140 (150)
T TIGR00068 97 VYKACERVRALGGNVVRE-PGPVKGGTTVIAFVEDPDGYKIELIQ 140 (150)
T ss_pred HHHHHHHHHHcCCccccC-CcccCCCceEEEEEECCCCCEEEEEE
Confidence 566677777888876532 22222233346678999998876554
No 327
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=20.50 E-value=2.9e+02 Score=19.53 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEe
Q 031422 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~ 116 (160)
...+.|++++++ .+.|+++.-...-..+.+..+++ .+|+++
T Consensus 179 ~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l-~~G~i~ 219 (227)
T cd03260 179 KIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFL-LNGRLV 219 (227)
T ss_pred HHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEE-eCCEEE
Confidence 445566666554 34444443222213455667777 467664
No 328
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=20.50 E-value=2.3e+02 Score=21.89 Aligned_cols=11 Identities=55% Similarity=0.951 Sum_probs=9.5
Q ss_pred CCCcEEEeccc
Q 031422 39 KGANIILIQEL 49 (160)
Q Consensus 39 ~~~dlvv~PE~ 49 (160)
.++|++++||.
T Consensus 185 ~~a~~iliPE~ 195 (324)
T TIGR02483 185 GGADVILIPEI 195 (324)
T ss_pred cCCCEEEecCC
Confidence 47999999995
No 329
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=20.43 E-value=2.7e+02 Score=19.79 Aligned_cols=41 Identities=10% Similarity=0.171 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcCCCCEe
Q 031422 74 PTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~~G~i~ 116 (160)
...+.|+++++ .+..+++ +.....-..+.+..+++ .+|++.
T Consensus 181 ~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l-~~G~i~ 222 (236)
T cd03219 181 ELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVL-DQGRVI 222 (236)
T ss_pred HHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEE-eCCEEE
Confidence 45556666655 4554444 43222222455666777 467664
No 330
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=20.41 E-value=2e+02 Score=20.01 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcCCCCE
Q 031422 74 PTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSD 115 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~~G~i 115 (160)
.....+..+|++.+.-+++ |...+-.-...+..++++| |.+
T Consensus 96 ~~~~~l~~la~~~~~Dvli~GHTH~p~~~~~~~i~~vNP-GS~ 137 (172)
T COG0622 96 TDLSLLEYLAKELGADVLIFGHTHKPVAEKVGGILLVNP-GSV 137 (172)
T ss_pred cCHHHHHHHHHhcCCCEEEECCCCcccEEEECCEEEEcC-CCc
Confidence 3566788888888877666 8666543344455777766 654
No 331
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=20.39 E-value=2.2e+02 Score=17.32 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHcCcEEEeccccccCCeeeEEEEEEcCCCCEeEEe
Q 031422 74 PTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLY 119 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~~~~~~~~Ns~~~i~~~G~i~~~y 119 (160)
.-++.+.+..++.++.+..+. ..... .+.++.+|+|..+..+
T Consensus 66 ~d~~~~~~~l~~~Gi~~~~~~-~~~~~---~~~~~~DP~Gn~iel~ 107 (112)
T cd08344 66 DDFAAFARHLEAAGVALAAAP-PGADP---DGVWFRDPDGNLLQVK 107 (112)
T ss_pred hhHHHHHHHHHHcCCceecCC-CcCCC---CEEEEECCCCCEEEEe
Confidence 445666777777888876542 22211 2477889999887554
No 332
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=20.31 E-value=3.5e+02 Score=20.32 Aligned_cols=60 Identities=7% Similarity=-0.005 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe-ccccccCCeee
Q 031422 25 NLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFFEEANNAHY 103 (160)
Q Consensus 25 n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~ 103 (160)
-.+++.+..+...+.|++.|++|-.- .+..++++++..+++++ |.=...+++..
T Consensus 158 ~a~~~i~~A~a~e~AGA~~ivlE~vp-------------------------~~~a~~It~~l~iP~iGIGaG~~~dGQvl 212 (263)
T TIGR00222 158 AAKKLLEDALALEEAGAQLLVLECVP-------------------------VELAAKITEALAIPVIGIGAGNVCDGQIL 212 (263)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCc-------------------------HHHHHHHHHhCCCCEEeeccCCCCCceee
Confidence 34556665666667899999988631 14456777788888765 65555556554
Q ss_pred EEEEEE
Q 031422 104 NSIAII 109 (160)
Q Consensus 104 Ns~~~i 109 (160)
...=++
T Consensus 213 V~~D~l 218 (263)
T TIGR00222 213 VMHDAL 218 (263)
T ss_pred eHHhhc
Confidence 443333
No 333
>PTZ00256 glutathione peroxidase; Provisional
Probab=20.29 E-value=1.2e+02 Score=20.99 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEec
Q 031422 20 DDVSTNLATAERLVRAAHGKGANIILIQ 47 (160)
Q Consensus 20 ~~~~~n~~~~~~~i~~a~~~~~dlvv~P 47 (160)
..+...+..+.++.++-.+.++.+|-++
T Consensus 54 p~C~~e~p~l~~l~~~~~~~gv~vv~vs 81 (183)
T PTZ00256 54 GLTSDHYTQLVELYKQYKSQGLEILAFP 81 (183)
T ss_pred CchHHHHHHHHHHHHHHhhCCcEEEEEe
Confidence 3466667777777776666778887776
No 334
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=20.27 E-value=3.6e+02 Score=22.73 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=26.7
Q ss_pred HHHHHHhCCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 031422 32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91 (160)
Q Consensus 32 ~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~ 91 (160)
.+..|.-.++||+++=|-+..- +-..+.||.+....+.+.++
T Consensus 208 aLARAlf~~pDlLLLDEPTNhL------------------Dv~av~WLe~yL~t~~~T~l 249 (582)
T KOG0062|consen 208 ALARALFAKPDLLLLDEPTNHL------------------DVVAVAWLENYLQTWKITSL 249 (582)
T ss_pred HHHHHHhcCCCEEeecCCcccc------------------hhHHHHHHHHHHhhCCceEE
Confidence 4444555688888888854420 23566788888888874443
No 335
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=20.23 E-value=3.8e+02 Score=20.02 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=35.8
Q ss_pred ccEEEEEeCCC-CC------CHHHHHHHHHHHHHHHHhCCCcEEEeccccccccc
Q 031422 8 EVVVSALQFAC-TD------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYF 55 (160)
Q Consensus 8 ~~~va~~Q~~~-~~------~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~ 55 (160)
+.-|+++++++ ++ +.++-+++..+-++...+.|+|=|++-=+.-.+|.
T Consensus 3 KpiIGmvHL~pLPGsp~~~~~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~ 57 (254)
T PF03437_consen 3 KPIIGMVHLPPLPGSPRYDGSMEEIIERAVREAEALEEGGVDGIIVENMGDVPYP 57 (254)
T ss_pred CCEEEEEcCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCcc
Confidence 45689999987 33 46677777777777778899999998776555553
No 336
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=20.21 E-value=2.5e+02 Score=19.98 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=31.1
Q ss_pred CCCcEEEeccccccccccccchhhHhhhcccCCCChHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcCCCCEe
Q 031422 39 KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 39 ~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~~G~i~ 116 (160)
.+++++++=|-+.. .. ... .....+.|.+++++ +..+++ +.....-..+.+..+++ .+|+++
T Consensus 159 ~~p~llllDEP~~g-LD---------~~~----~~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l-~~G~i~ 221 (224)
T cd03220 159 LEPDILLIDEVLAV-GD---------AAF----QEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVL-EKGKIR 221 (224)
T ss_pred cCCCEEEEeCCccc-CC---------HHH----HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEE-ECCEEE
Confidence 46888888885442 11 000 12455667776655 444444 43222212344556666 357653
No 337
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.19 E-value=1.6e+02 Score=16.53 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=17.8
Q ss_pred HHHHHHH-HHHhCCCcEEEeccccc
Q 031422 28 TAERLVR-AAHGKGANIILIQELFE 51 (160)
Q Consensus 28 ~~~~~i~-~a~~~~~dlvv~PE~~~ 51 (160)
++.+.|+ +|...|..++..+|...
T Consensus 3 ~~~~~L~yka~~~G~~v~~v~~~~T 27 (69)
T PF07282_consen 3 QFRQRLEYKAEEYGIQVVEVDEAYT 27 (69)
T ss_pred HHHHHHHHHHHHhCCEEEEECCCCC
Confidence 4555555 56668999999999864
No 338
>PRK10908 cell division protein FtsE; Provisional
Probab=20.15 E-value=2.6e+02 Score=19.75 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHcCcEEEe-ccccccCCeeeEEEEEEcCCCCEe
Q 031422 74 PTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSDL 116 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~-g~~~~~~~~~~Ns~~~i~~~G~i~ 116 (160)
.+.+.|.++.++ +..+++ +.....-..+.+..+++. +|+++
T Consensus 175 ~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~-~G~i~ 216 (222)
T PRK10908 175 GILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLTLS-DGHLH 216 (222)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEE-CCEEc
Confidence 445556666544 444444 432221123344556663 56654
No 339
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=20.14 E-value=1.9e+02 Score=21.77 Aligned_cols=23 Identities=4% Similarity=0.057 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHcCcEEEecccc
Q 031422 74 PTILKMQELAKELGVVMPVSFFE 96 (160)
Q Consensus 74 ~~~~~l~~~a~~~~i~i~~g~~~ 96 (160)
..++...+.+++.++.+++|...
T Consensus 188 ~~~~~a~~~~~~aDlllviGTSl 210 (271)
T PTZ00409 188 SLLKQAEKEIDKCDLLLVVGTSS 210 (271)
T ss_pred HHHHHHHHHHHcCCEEEEECCCC
Confidence 34455566677788998888554
No 340
>cd01717 Sm_B The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit B heterodimerizes with subunit D3 and three such heterodimers form a hexameric ring structure with alternating B and D3 subunits. The D3 - B heterodimer also assembles into a heptameric ring containing D1, D2, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=20.04 E-value=99 Score=18.26 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=10.0
Q ss_pred EEeCCee--EEEEeccC
Q 031422 146 FQTKFAK--IGVGKGFY 160 (160)
Q Consensus 146 ~~~~~~r--ig~~ICy~ 160 (160)
+.+.++| .|.+.|||
T Consensus 15 V~l~dgR~~~G~L~~~D 31 (79)
T cd01717 15 VTLQDGRQFVGQFLAFD 31 (79)
T ss_pred EEECCCcEEEEEEEEEc
Confidence 4455554 78888887
Done!