Query 031423
Match_columns 160
No_of_seqs 132 out of 454
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 22:24:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ipb_A PHON protein, class A n 99.1 2.4E-10 8E-15 92.6 8.4 92 47-158 97-198 (230)
2 1d2t_A Acid phosphatase; all a 99.0 4E-10 1.4E-14 91.4 7.3 92 47-158 109-210 (231)
3 1qi9_A Protein (vanadium bromo 98.5 3.7E-07 1.3E-11 83.9 10.2 96 46-158 374-507 (556)
4 1up8_A Vanadium-dependent brom 97.7 8.6E-05 3E-09 68.9 7.6 69 72-157 480-573 (598)
5 3bb0_A Vanadium chloroperoxida 97.4 0.00029 1E-08 65.4 7.6 45 50-94 350-419 (609)
6 2lx0_A Membrane fusion protein 32.4 20 0.00068 20.7 1.4 11 137-147 3-13 (32)
7 3uqs_A RNA-dependent RNA polym 19.5 29 0.00098 31.1 0.6 15 70-84 293-307 (515)
8 2k1k_A Ephrin type-A receptor 18.1 84 0.0029 18.6 2.3 15 140-154 10-24 (38)
9 3bso_A RNA dependent RNA polym 17.9 28 0.00097 30.8 0.2 14 71-84 294-307 (510)
10 2ju0_B Phosphatidylinositol 4- 17.4 1.3E+02 0.0043 19.3 3.2 38 111-150 11-49 (52)
No 1
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=99.10 E-value=2.4e-10 Score=92.56 Aligned_cols=92 Identities=17% Similarity=0.123 Sum_probs=66.6
Q ss_pred HHHhHHHHHHHhhhccccch----hh-----hhccCCCCchHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhh
Q 031423 47 ALAQFLKIFTTWYKEKRWDS----KK-----MLDSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLACILLNQIVC 117 (160)
Q Consensus 47 ~vAQ~iK~~i~~~~~~~~d~----~~-----l~~sGGMPSSHSA~V~aLat~igl~~G~~s~~Faia~v~A~Ivln~l~~ 117 (160)
++.+++|..+++-|+...+. .. .-...+|||+|++..+++++.+.+...-. ....+.++..+..+
T Consensus 97 ~~~~~lK~~~~r~RP~~~~~~~~~~~~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~~~---~~~~~~~a~~v~~S--- 170 (230)
T 2ipb_A 97 YATASAKKYYMRTRPFVLFNHSTCRPEDENTLRKDGSYPSGHDAYSTLLALVLSQARPER---AQELARRGWEFGQS--- 170 (230)
T ss_dssp TTTHHHHHHHCCCCHHHHTTCCCSCGGGHHHHHTSCCSSCHHHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhCCCCcCccCCCCeeccCcccCCCCCCCcChHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---
Confidence 67799999998877743221 11 12356999999999999999888775421 12234455555555
Q ss_pred cCCCCCCCCCCCCccccCC-CChHHHHHHHHHHHHHHHhhcc
Q 031423 118 EFPPDHPLSSVRPLRELLG-HTPLQVVAGGILGCVVAFLMRN 158 (160)
Q Consensus 118 ~~~~~~~~~~~~~LkE~lG-Htp~EVl~GallGivia~i~~~ 158 (160)
|.++| |+|.||++|.++|+.++..+++
T Consensus 171 --------------Rv~~G~H~~sDVlaG~~lG~~~~~~~~~ 198 (230)
T 2ipb_A 171 --------------RVICGAHWQSDVDAGRYVGAVEFARLQT 198 (230)
T ss_dssp --------------HHHHTSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred --------------HHhcCcccHHHHHHHHHHHHHHHHHHHc
Confidence 78899 9999999999999999887654
No 2
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=99.03 E-value=4e-10 Score=91.41 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=66.4
Q ss_pred HHHhHHHHHHHhhhccccc----hhhh-----hccCCCCchHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhh
Q 031423 47 ALAQFLKIFTTWYKEKRWD----SKKM-----LDSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLACILLNQIVC 117 (160)
Q Consensus 47 ~vAQ~iK~~i~~~~~~~~d----~~~l-----~~sGGMPSSHSA~V~aLat~igl~~G~~s~~Faia~v~A~Ivln~l~~ 117 (160)
.+.+.+|..+++.|+...+ +... -...+|||+|++..+++++.++...+-. ....+.++..+..+
T Consensus 109 ~~~~~lK~~~~r~RP~~~~~~~~~~p~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~~~---~~~~~~~a~~v~~S--- 182 (231)
T 1d2t_A 109 LATRSAKDHYMRIRPFAFYGVSTCNTTEQDKLSKNGSYPSGHTSIGWATALVLAEINPQR---QNEILKRGYELGQS--- 182 (231)
T ss_dssp TTTHHHHHHHCCCCHHHHHTCCCSCC--CCCCCSSCCSSCHHHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhCCCCcCccCCCCceecCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---
Confidence 5678999999887773221 2111 1345999999999999999988875421 22234445555555
Q ss_pred cCCCCCCCCCCCCccccCC-CChHHHHHHHHHHHHHHHhhcc
Q 031423 118 EFPPDHPLSSVRPLRELLG-HTPLQVVAGGILGCVVAFLMRN 158 (160)
Q Consensus 118 ~~~~~~~~~~~~~LkE~lG-Htp~EVl~GallGivia~i~~~ 158 (160)
|.++| |+|.||++|.++|..++..+.+
T Consensus 183 --------------RvylGvH~psDVlaG~~lG~~~~~~~~~ 210 (231)
T 1d2t_A 183 --------------RVICGYHWQSDVDAARVVGSAVVATLHT 210 (231)
T ss_dssp --------------HHHHTSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred --------------HHhcCCcCHHHHHHHHHHHHHHHHHHHc
Confidence 78899 9999999999999999887654
No 3
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=98.53 E-value=3.7e-07 Score=83.90 Aligned_cols=96 Identities=21% Similarity=0.276 Sum_probs=65.5
Q ss_pred HHHHhHHHHHHHhhhcc--ccchhhhhc---------cCCCCchHHHHHHHHHHHHHHHhCCC-------ch--------
Q 031423 46 FALAQFLKIFTTWYKEK--RWDSKKMLD---------SGGMPSSHSATVSALAVAIGLQEGSG-------SP-------- 99 (160)
Q Consensus 46 w~vAQ~iK~~i~~~~~~--~~d~~~l~~---------sGGMPSSHSA~V~aLat~igl~~G~~-------s~-------- 99 (160)
|.-.|++|.++++-|+- ..+|..++. ..++||+||+..+++++.+....|-+ .+
T Consensus 374 ~~~~~lLK~l~~RpRP~~~~~~~~~Ll~~~~~~~tp~~~SFPSGHAt~A~A~A~vL~~l~g~~~~~~~~~~r~~~~~~G~ 453 (556)
T 1qi9_A 374 LENAELLKRVAAINAAQNPNNEVTYLLPQAIQEGSPTHPSYPSGHATQNGAFATVLKALIGLDRGGDCYPDPVYPDDDGL 453 (556)
T ss_dssp HTCHHHHHHHHHHHHHHSGGGCCCCCCCBSSTTCSCSSCCSSCHHHHHHHHHHHHHHHHHCHHHHTSBCSSCEEECTTSS
T ss_pred hhhhhHHHhhhccCCCCCCccccceeeecccccCCCCCCCCChHHHHHHHHHHHHHHHHHhccccccccccccccccccc
Confidence 33347899999988873 344544432 34999999999999999998775310 10
Q ss_pred --------HHHH---HHHHHHHHHHHHhhcCCCCCCCCCCCCccccCC-CChHHHHHHHHHHHHHHHhhcc
Q 031423 100 --------SFAI---AVVLACILLNQIVCEFPPDHPLSSVRPLRELLG-HTPLQVVAGGILGCVVAFLMRN 158 (160)
Q Consensus 100 --------~Fai---a~v~A~Ivln~l~~~~~~~~~~~~~~~LkE~lG-Htp~EVl~GallGivia~i~~~ 158 (160)
...+ ...+|..+..+ |.|+| |+|.+|++|.++|..++..+.+
T Consensus 454 ~r~~~~~~~l~~~~~l~~lA~lIg~S-----------------RVYlGVHYPSDVlaG~lLG~~va~~vl~ 507 (556)
T 1qi9_A 454 KLIDFRGSCLTFEGEINKLAVNVAFG-----------------RQMLGIHYRFDGIQGLLLGETITVRTLH 507 (556)
T ss_dssp SEEECCSSCCBHHHHHHHHHHHHHHH-----------------HHHTTSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeehhhHHHHHHHHHHHH-----------------HHeeCccCHHHHHHHHHHHHHHHHHHHH
Confidence 0111 11133333333 88999 9999999999999999976643
No 4
>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase, vanadate; 2.20A {Corallina pilulifera} SCOP: a.111.1.2 PDB: 1qhb_A
Probab=97.66 E-value=8.6e-05 Score=68.85 Aligned_cols=69 Identities=20% Similarity=0.067 Sum_probs=50.0
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhCCCc----h--------------------HHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 031423 72 SGGMPSSHSATVSALAVAIGLQEGSGS----P--------------------SFAIAVVLACILLNQIVCEFPPDHPLSS 127 (160)
Q Consensus 72 sGGMPSSHSA~V~aLat~igl~~G~~s----~--------------------~Faia~v~A~Ivln~l~~~~~~~~~~~~ 127 (160)
...+||+||+..+|.++.+....+-+. + +......+|..+..+
T Consensus 480 ~pSYPSGHAt~S~A~A~vL~~lf~~~~~~~~~~~~~~~G~~R~~p~~g~~ltv~~sl~~lA~eig~S------------- 546 (598)
T 1up8_A 480 HPSYGSGHAVVAGACVTILKAFFDSGIEIDQVFEVDKDEDKLVKSSFKGTLTVAGELNKLADNIAIG------------- 546 (598)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHHBTTTCBCSCCEEECSSSSSEEECCCCSCCBHHHHHHHHHHHHHHH-------------
T ss_pred CCCCChHHHHHHHHHHHHHHHHhccccccccccccccCcccccccccccchhHHHHHHHHHHHHHHH-------------
Confidence 459999999999999999998865432 0 011112223333333
Q ss_pred CCCccccCC-CChHHHHHHHHHHHHHHHhhc
Q 031423 128 VRPLRELLG-HTPLQVVAGGILGCVVAFLMR 157 (160)
Q Consensus 128 ~~~LkE~lG-Htp~EVl~GallGivia~i~~ 157 (160)
|.|+| |+|.+|++|..+|..++..+.
T Consensus 547 ----RVYlGVHypSDVlAG~~LG~aVa~~vl 573 (598)
T 1up8_A 547 ----RNMAGVHYFSDQFESLLLGEQVAIGIL 573 (598)
T ss_dssp ----HHHHTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----hheeeeecHHHHHHHHHHHHHHHHHHH
Confidence 88999 999999999999999987653
No 5
>3bb0_A Vanadium chloroperoxidase; protein phosphate-intermediate complex, phospatase activity, chloride, metal-binding, oxidoreductase, secreted; 1.50A {Curvularia inaequalis} PDB: 1vns_A 1vnc_A 1vni_A 1idq_A 1vne_A 1vnf_A 1idu_A 1vng_A 1vnh_A
Probab=97.41 E-value=0.00029 Score=65.36 Aligned_cols=45 Identities=11% Similarity=-0.130 Sum_probs=33.9
Q ss_pred hHHHHHHHhhhc------------cccchhhhhc-------------cCCCCchHHHHHHHHHHHHHHHh
Q 031423 50 QFLKIFTTWYKE------------KRWDSKKMLD-------------SGGMPSSHSATVSALAVAIGLQE 94 (160)
Q Consensus 50 Q~iK~~i~~~~~------------~~~d~~~l~~-------------sGGMPSSHSA~V~aLat~igl~~ 94 (160)
-..|...+++|+ ...+|..+.. ...+||+||+...|.++.+....
T Consensus 350 w~~K~~y~R~RP~taI~~~~~~~~~dp~w~~l~~~~~~~~~~~~tP~~pSYPSGHAt~s~A~A~vL~~~f 419 (609)
T 3bb0_A 350 WKEKWEFEFWRPLSGVRDDGRPDHGDPFWLTLGAPATNTNDIPFKPPFPAYPSGHATFGGAVFQMVRRYY 419 (609)
T ss_dssp HHHHHHHCBCCHHHHHHTCCCTTTCCTTCCBCCBCCTTSSSCCBCCSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhcCCCcCchhhcccccccCCccchhhcccccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 447998888887 1234544431 35899999999999999999987
No 6
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=32.41 E-value=20 Score=20.70 Aligned_cols=11 Identities=45% Similarity=0.640 Sum_probs=9.6
Q ss_pred CChHHHHHHHH
Q 031423 137 HTPLQVVAGGI 147 (160)
Q Consensus 137 Htp~EVl~Gal 147 (160)
||.-||++|.+
T Consensus 3 htiweviaglv 13 (32)
T 2lx0_A 3 HTIWEVIAGLV 13 (32)
T ss_dssp SSSHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 99999999953
No 7
>3uqs_A RNA-dependent RNA polymerase; transferase; 2.00A {Murine norovirus} PDB: 3ur0_A* 3upf_A* 3sfg_A* 3nah_A 3nai_A 3qid_A* 3sfu_A*
Probab=19.50 E-value=29 Score=31.12 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=12.1
Q ss_pred hccCCCCchHHHHHH
Q 031423 70 LDSGGMPSSHSATVS 84 (160)
Q Consensus 70 ~~sGGMPSSHSA~V~ 84 (160)
...|||||+|..|+.
T Consensus 293 ~v~gG~PSG~p~Tsi 307 (515)
T 3uqs_A 293 VVEEGLPSGCPCTTQ 307 (515)
T ss_dssp EECSSCCCCSTHHHH
T ss_pred EEcCCccCCCcceee
Confidence 358999999987764
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=18.08 E-value=84 Score=18.62 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHH
Q 031423 140 LQVVAGGILGCVVAF 154 (160)
Q Consensus 140 ~EVl~GallGivia~ 154 (160)
.-.++|+++|.+++.
T Consensus 10 ~GaIAGiVvG~v~gv 24 (38)
T 2k1k_A 10 GGEIVAVIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCceeeeehHHHHHH
Confidence 445677777777653
No 9
>3bso_A RNA dependent RNA polymerase; RNA-dependent RNA polymerase, viral replication, antiviral E inhibitor, helicase, hydrolase; HET: CTP; 1.74A {Norwalk virus} PDB: 3bsn_A* 3h5x_A* 3h5y_A* 1sh0_A 1sh2_A 1sh3_A 2b43_A
Probab=17.89 E-value=28 Score=30.79 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=11.7
Q ss_pred ccCCCCchHHHHHH
Q 031423 71 DSGGMPSSHSATVS 84 (160)
Q Consensus 71 ~sGGMPSSHSA~V~ 84 (160)
..|||||+|..|+.
T Consensus 294 ~~~G~PSG~p~Tsi 307 (510)
T 3bso_A 294 INEGLPSGVPCTSQ 307 (510)
T ss_dssp ECSSCCTTSTTHHH
T ss_pred EeCcccCCCCeeec
Confidence 58999999988764
No 10
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=17.38 E-value=1.3e+02 Score=19.29 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=22.7
Q ss_pred HHHHHhhcCCCCC-CCCCCCCccccCCCChHHHHHHHHHHH
Q 031423 111 LLNQIVCEFPPDH-PLSSVRPLRELLGHTPLQVVAGGILGC 150 (160)
Q Consensus 111 vln~l~~~~~~~~-~~~~~~~LkE~lGHtp~EVl~GallGi 150 (160)
++|++-.-+...+ +....++.||- =.|.=|++|++++-
T Consensus 11 ~~NklQ~ilFn~~~~~~~~~k~~EN--v~PalVL~s~v~sS 49 (52)
T 2ju0_B 11 VLNNLQTNLFNTSSGSDKNVKIHEN--VAPALVLSSMIMSA 49 (52)
T ss_dssp HHHHHTCCSSCSSCCCCTTCCSSCS--HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCccccchHHhhcc--ccHHHHHHHHHHHH
Confidence 4566544443322 22233466776 47999999999874
Done!