BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031424
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana
Length = 139
Score = 177 bits (450), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 80/138 (57%), Positives = 105/138 (76%)
Query: 22 LFQATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASL 81
+ A +GM V D+CK F+E+K K+ HR+IV+KI+EK K V V+KVG + YE+ AA L
Sbjct: 1 MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACL 60
Query: 82 PDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYE 141
P D+CRYA++DFDFVT +NC+KSKIFFIAW P +++R+KM+YA+SKD +R LDGI E
Sbjct: 61 PADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVE 120
Query: 142 VQATDPTEMGFDVIMDRA 159
+QATDPTEM DV RA
Sbjct: 121 LQATDPTEMDLDVFRSRA 138
>pdb|1AHQ|A Chain A, Recombinant Actophorin
Length = 137
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 90/134 (67%), Gaps = 1/134 (0%)
Query: 27 TGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDC 86
+G+ V+D+C F E+K HRY+ FK++ + V V+ VGG YED + LP+ DC
Sbjct: 1 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDC 60
Query: 87 RYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATD 146
RYA+FD++F VD +++KI FI WAP ++ I++KM+Y ++KD +++ L GI EVQATD
Sbjct: 61 RYAIFDYEF-QVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATD 119
Query: 147 PTEMGFDVIMDRAK 160
E+ D + +RAK
Sbjct: 120 AAEISEDAVSERAK 133
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga
Length = 137
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Query: 28 GMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCR 87
G+ V+D+C F E+K HRY+ FK++ + V V+ VGG YED + LP+ DCR
Sbjct: 2 GIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCR 61
Query: 88 YAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATDP 147
YA+FD++F VD +++KI FI WAP ++ I++KM+Y ++KD +++ L GI EVQATD
Sbjct: 62 YAIFDYEF-QVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDA 120
Query: 148 TEMGFDVIMDRAK 160
E+ D + +RAK
Sbjct: 121 AEISEDAVSERAK 133
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin
Length = 137
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 87/132 (65%), Gaps = 2/132 (1%)
Query: 27 TGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDC 86
+G+ V+ EC +F E+K K RY+VFK+++ + V+K + ++ LP+ DC
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEK-KSTDKDFDTFLGDLPEKDC 62
Query: 87 RYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQATD 146
RYA++DF+F + R +KI FI+W+P + I++KM+Y++SKD LRR GI ++QATD
Sbjct: 63 RYAIYDFEFNLGEGVR-NKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATD 121
Query: 147 PTEMGFDVIMDR 158
+E+ ++ ++++
Sbjct: 122 FSEVAYETVLEK 133
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form
pdb|1CFY|B Chain B, Yeast Cofilin, Monoclinic Crystal Form
pdb|1QPV|A Chain A, Yeast Cofilin
pdb|1COF|A Chain A, Yeast Cofilin, Orthorhombic Crystal Form
Length = 143
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 86/133 (64%), Gaps = 2/133 (1%)
Query: 27 TGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDC 86
+G+ VADE +F ++K K +++I+F +++ + V K Y+ LP++DC
Sbjct: 4 SGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVV-KETSTDPSYDAFLEKLPENDC 62
Query: 87 RYAVFDFDF-VTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQAT 145
YA++DF++ + + ++SKI F W+P + +R+KM+YA+SKD LRR L+G+ +VQ T
Sbjct: 63 LYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGT 122
Query: 146 DPTEMGFDVIMDR 158
D +E+ +D +++R
Sbjct: 123 DFSEVSYDSVLER 135
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure
pdb|1AK7|A Chain A, Destrin, Nmr, 20 Structures
Length = 174
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 19/153 (12%)
Query: 24 QATTGMWVADECKNSFMEMK---------WKKVHRYIVFKIDEKSKLVTVDK-----VGG 69
+ +G+ VADE F +MK KK + ++F + K + V++ VG
Sbjct: 9 NSASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGD 68
Query: 70 AG----EGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYA 125
G + ++ LP+ DCRYA++D F T ++ RK ++ F WAP + +++KM+YA
Sbjct: 69 VGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYA 127
Query: 126 TSKDGLRRVLDGIHYEVQATDPTEMGFDVIMDR 158
+SKD +++ GI +E QA P ++ I ++
Sbjct: 128 SSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 160
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin
pdb|1Q8X|A Chain A, Nmr Structure Of Human Cofilin
pdb|3J0S|M Chain M, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|O Chain O, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|N Chain N, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|Q Chain Q, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|P Chain P, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|S Chain S, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|R Chain R, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|U Chain U, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|T Chain T, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|W Chain W, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|V Chain V, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|X Chain X, Remodeling Of Actin Filaments By Adf Cofilin Proteins
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 19/137 (13%)
Query: 27 TGMWVADECKNSFMEMKW---------KKVHRYIVFKIDEKSKLVTVDK-----VGGAGE 72
+G+ V+D F +MK KK + ++F + E K + +++ VG G+
Sbjct: 3 SGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQ 62
Query: 73 GYEDLAAS----LPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSK 128
+D A+ LPD DCRYA++D + T ++ +K + FI WAP ++ +++KM+YA+SK
Sbjct: 63 TVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSK 121
Query: 129 DGLRRVLDGIHYEVQAT 145
D +++ L GI +E+QA
Sbjct: 122 DAIKKKLTGIKHELQAN 138
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
pdb|2XFA|B Chain B, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
Length = 148
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 7/130 (5%)
Query: 22 LFQATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVD------KVGGAGEGYE 75
L +G+ V+DEC F +K K +++YI++KI+ K+V VD ++
Sbjct: 3 LGSMVSGVNVSDECIYEFNRLKVKHLNKYIIYKIENLEKIV-VDVLEHDMELTSLDNIIM 61
Query: 76 DLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVL 135
+ +L + +CRY + D T + + +I+FI W+P S+ + KMLYA SK+ L R +
Sbjct: 62 RIKNNLKNTECRYIIADMPIPTPEGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKI 121
Query: 136 DGIHYEVQAT 145
+GI ++ T
Sbjct: 122 NGIFKSLEIT 131
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI
Length = 144
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 25 ATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDD 84
A +G+ VADEC + +++ KK I+ +D+KS + V +G G ++ ++ +
Sbjct: 10 AMSGVSVADECVTALNDLRHKKSRYVIMHIVDQKS--IAVKTIGERGANFDQFIEAIDKN 67
Query: 85 DCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQA 144
YA FDF++ T D R K+ I+W P + R KMLY++S+D L + G +QA
Sbjct: 68 VPCYAAFDFEYTTNDGPR-DKLILISWNPDSGAPRTKMLYSSSRDALVPLTQGFQ-GIQA 125
Query: 145 TDPTEMGFDVIMDRAK 160
D + + F+ I + K
Sbjct: 126 NDASGLDFEEISRKVK 141
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin
Length = 166
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 81/151 (53%), Gaps = 24/151 (15%)
Query: 27 TGMWVADECKNSFMEMK---------WKKVHRYIVFKIDEKSKLVTVDK-----VGGAGE 72
+G+ V DE F +MK KK + ++F + + K + V++ VG G+
Sbjct: 3 SGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIGD 62
Query: 73 GYEDLAAS----LPDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSK 128
ED + LP +DCRYA++D + T ++ +K + FI WAP ++ +++KM+YA+SK
Sbjct: 63 TVEDPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSK 121
Query: 129 DGLRRVLDGIHYEVQATDPTEMGFDVIMDRA 159
D +++ GI +E Q G D I DR+
Sbjct: 122 DAIKKKFTGIKHEWQVN-----GLDDIKDRS 147
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma
Gondii (Tgadf)
Length = 139
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 15/126 (11%)
Query: 26 TTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDD 85
+GM V + C F E+K +K ++IVFKI+ +V D G A E +LP +D
Sbjct: 23 ASGMGVDENCVARFNELKIRKTVKWIVFKIENTKIVVEKDGKGNADE----FRGALPAND 78
Query: 86 CRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQAT 145
CR+ V+D +KI F+ W P + ++ +M YA+SKD L + LDG A
Sbjct: 79 CRFGVYDCG---------NKIQFVLWCPDNAPVKPRMTYASSKDALLKKLDG--ATAVAL 127
Query: 146 DPTEMG 151
+ EMG
Sbjct: 128 EAHEMG 133
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA
DONOVANI
Length = 144
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 25 ATTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDD 84
A +G+ + + + + +++ KK RY++ I K + V +VG Y DL +
Sbjct: 2 AISGVTLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTE 60
Query: 85 DCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIHYEVQA 144
Y FDF++ ++ K+ I W P +R R KM+Y+ S+D L V +G + +QA
Sbjct: 61 KPCYVAFDFEYNDA-GSKREKLILIQWIPDTARPREKMMYSASRDALSSVSEG-YLPIQA 118
Query: 145 TDPTEMGFD 153
D E G D
Sbjct: 119 ND--ESGLD 125
>pdb|3Q2B|A Chain A, Crystal Structure Of An Actin Depolymerizing Factor
Length = 124
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 27 TGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDD- 85
+G+ V D C F MK +K +I+F I + +++ K GA +L S+ ++
Sbjct: 5 SGIRVNDNCVTEFNNMKIRKTCGWIIFVI-QNCEIIIHSK--GASTTLTELVQSIDKNNE 61
Query: 86 --CRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIH 139
C Y VFD SKI F +A +S R +M YA+SK + + ++G++
Sbjct: 62 IQCAYVVFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVN 108
>pdb|2XF1|A Chain A, Crystal Structure Of Plasmodium Falciparum Actin
Depolymerization Factor 1
Length = 124
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 27 TGMWVADECKNSFMEMKWKKV-HRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDD 85
+G+ V D C F MK +K +I+F I +++ K GA +L S+ ++
Sbjct: 5 SGIRVNDNCVTEFNNMKIRKTCXGWIIFVIQNXCEIIIHSK--GASTTLTELVQSIDKNN 62
Query: 86 ---CRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIH 139
C Y VFD SKI F +A +S R +M YA+SK + + ++G++
Sbjct: 63 EIQCAYVVFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVN 110
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
pdb|1M4J|B Chain B, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
Length = 142
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 27 TGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYED-----LAASL 81
TG+ +++ K F + K Y + KI +++ + V + +E + L
Sbjct: 5 TGIQASEDVKEIFARARNGK---YRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLL 61
Query: 82 PDDDCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIH 139
D Y +F D N + + FIAW+P S +R KMLYA ++ L++ G H
Sbjct: 62 EDKQPCYVLFRLD---SQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGH 116
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg)
From Mus Musculus At 1.50 A Resolution
Length = 154
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 31 VADECKNSFMEMKWKKV--HRYIVFKIDEKSKLVTV-DKVGGAGEGYEDLAASLPDDDCR 87
V E K + + +++K + I+ K+D+ ++V + D++ E+L LP+ R
Sbjct: 22 VDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNISP--EELKLELPERQPR 79
Query: 88 YAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIH-YEVQATD 146
+ V+ + +V D + FI +P + +M+YA SK+ L + + +E++ TD
Sbjct: 80 FVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTD 139
>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
pdb|3L50|B Chain B, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
Length = 136
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 51 IVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVDNCRKSKIFFIA 110
I+ K+D+ ++V +++ E+L LP+ R+ V+ + +V D + FI
Sbjct: 28 IIMKVDKDRQMVVLEE-EFQNISPEELKMELPERQPRFVVYSYKYVHDDGRVSYPLCFIF 86
Query: 111 WAPTASRIRAKMLYATSKDGLRRVLDGIH-YEVQATD 146
+P + +M+YA SK+ L + + +E++ TD
Sbjct: 87 SSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTD 123
>pdb|1WFS|A Chain A, Solution Structure Of Glia Maturation Factor-Gamma From
Mus Musculus
Length = 151
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 31 VADECKNSFMEMKWKKV--HRYIVFKIDEKSKLVTV-DKVGGAGEGYEDLAASLPDDDCR 87
V E K + + +++K + I+ K+D+ ++V + D++ E+L LP+ R
Sbjct: 16 VDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNISP--EELKLELPERQPR 73
Query: 88 YAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIH-YEVQATD 146
+ V+ + +V D + FI +P + +M+YA SK+ L + + +E++ TD
Sbjct: 74 FVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTD 133
>pdb|2VAC|A Chain A, Structure Of N-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 134
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 26 TTGMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKL-VTVDKVGGAGEGYEDLAASLPDD 84
+ G+ +E K F + + V V DE+ L + + VG + Y+ A LP
Sbjct: 1 SMGIHATEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYD--RAVLPLL 58
Query: 85 DCRYAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGIH 139
D + + + N + + F+AW+P S +R KMLYA ++ +++ G H
Sbjct: 59 DAQQPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGH 113
>pdb|2W0I|A Chain A, Structure Of C-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 135
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 28 GMWVADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCR 87
M + E + + ++K K V+ YI K+D + + T++ V L + +P D R
Sbjct: 1 SMPLQPEAQRALQQLKQKMVN-YIQMKLDLERE--TIELVHTEPTDVAQLPSRVPRDAAR 57
Query: 88 YAVFDFDFVTVDNCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLDGI 138
Y F + + +S +F + I+ +MLY++ K R+LD +
Sbjct: 58 YHFFLYKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKS---RLLDSV 105
>pdb|2HD7|A Chain A, Solution Structure Of C-Teminal Domain Of Twinfilin-1
Length = 142
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 40 MEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVD 99
+E KK Y+ +ID K++ + + DL +P D RY F +
Sbjct: 16 LEKLSKKQLNYVQLEIDIKNETIIL--ANTENTELRDLPKRIPKDSARYHFFLYKHSHEG 73
Query: 100 NCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLD 136
+ +S +F + IR +MLY++ K L +++
Sbjct: 74 DYLESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVE 110
>pdb|3DAW|B Chain B, Structure Of The Actin-Depolymerizing Factor Homology
Domain In Complex With Actin
Length = 164
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 40 MEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVD 99
+E KK Y+ +ID K++ + + DL +P D RY F +
Sbjct: 32 LEKLSKKQLNYVQLEIDIKNETIIL--ANTENTELRDLPKRIPKDSARYHFFLYKHSHEG 89
Query: 100 NCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLD 136
+ +S +F + IR +MLY++ K L +++
Sbjct: 90 DYLESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVE 126
>pdb|2D8B|A Chain A, Solution Structure Of The Second Tandem Cofilin-Domain Of
Mouse Twinfilin
Length = 166
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 40 MEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVD 99
+E KK Y+ +ID K++ + + DL +P D RY F +
Sbjct: 37 LEKLSKKQLNYVQLEIDIKNETIIL--ANTENTELRDLPKRIPKDSARYHFFLYKHSHEG 94
Query: 100 NCRKSKIFFIAWAPTASRIRAKMLYATSKDGLRRVLD 136
+ +S +F + IR +MLY++ K L +++
Sbjct: 95 DYLESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVE 131
>pdb|1MAI|A Chain A, Structure Of The Pleckstrin Homology Domain From
Phospholipase C Delta In Complex With Inositol
Trisphosphate
Length = 131
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 20/99 (20%)
Query: 13 FMILFSGCFLFQATTGMW-------VADECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVD 65
L G L + + W + ++CK + E + KV R +S+L +++
Sbjct: 10 LQALLKGSQLLKVKSSSWRRERFYKLQEDCKTIWQESR--KVMR------SPESQLFSIE 61
Query: 66 -----KVGGAGEGYEDLAASLPDDDCRYAVFDFDFVTVD 99
++G EG E A +P+D C VF T+D
Sbjct: 62 DIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLD 100
>pdb|3LWT|X Chain X, Crystal Structure Of The Yeast Sac1: Implications For Its
Phosphoinositide Phosphatase Function
Length = 505
Score = 28.1 bits (61), Expect = 2.4, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 33 DECKNSFMEMKWKKVHRYIVFKIDEKSKLVTVDKVGGAGEGYEDLAASLPDDDCRYAVFD 92
D K F + K Y+V +++K + V EGYE + +L D Y FD
Sbjct: 284 DATKKHFDQQKELYGDNYLVNLVNQKGHELPVK------EGYESVVHALNDPKIHYVYFD 337
Query: 93 FDFVTVDNCRK 103
F CRK
Sbjct: 338 FH----HECRK 344
>pdb|2HZ6|A Chain A, The Crystal Structure Of Human Ire1-Alpha Luminal Domain
Length = 369
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 74 YEDLAASLPDDDCRYAVFDFD------FVTVDNCRKSKIFFIAWAPTASRIRAKMLYATS 127
Y D AASLP+DD Y + F VTVD+ ++ + AS + A Y
Sbjct: 158 YFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY---ASPVVA--FYVWQ 212
Query: 128 KDGLRRVL 135
++GLR+V+
Sbjct: 213 REGLRKVM 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.141 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,721,991
Number of Sequences: 62578
Number of extensions: 178632
Number of successful extensions: 657
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 26
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)